diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md deleted file mode 100644 index c167138a..00000000 --- a/CONTRIBUTING.md +++ /dev/null @@ -1,28 +0,0 @@ -# Contributing to multi-language-al-folio - -Thank you for considering contributing to al-folio or its multilingual version! Please check if your contribution is related to the template itself or to the multilingual aspect of it. If it is the former, please consider doing it in the original [al-folio](https://github.com/alshedivat/al-folio/) repository. If it is the latter, follow the instructions below. - -## Pull Requests - -We welcome your pull requests (PRs). -For minor fixes (e.g., documentation improvements), feel free to submit a PR directly. -If you would like to implement a new feature or a bug, please make sure you (or someone else) has opened an appropriate issue first; in your PR, please mention the issue it addresses. - -Note that since [#2048](https://github.com/alshedivat/al-folio/pull/2048) al-folio uses the [prettier formatter](https://prettier.io/) for its code, meaning all new submitted code must conform to its standard. If you don't have `prettier` installed for your setup and the `prettier` code check fails when submitting a PR, you can check the referred failed action in our repo. In that action there will be an artifact with an HTML diff showing the needed changes. - -## Issues - -We use GitHub issues to track bugs and feature requests. -Before submitting an issue, please make sure: - -1. You have read [the FAQ section](FAQ.md) of the README and your question is NOT addressed there. -2. You have done your best to ensure that your issue is NOT a duplicate of one of [the previous issues](https://github.com/george-gca/multi-language-al-folio/issues). -3. Your issue is either a bug (unexpected/undesirable behavior) or a feature request. - If it is just a question, please ask it in the [Discussions](https://github.com/george-gca/multi-language-al-folio/discussions) forum. - -When submitting an issue, please make sure to use the appropriate template. - -## License - -By contributing to multi-language-al-folio, you agree that your contributions will be licensed -under the LICENSE file in the root directory of the source tree. diff --git a/CUSTOMIZE.md b/CUSTOMIZE.md deleted file mode 100644 index 879d52ff..00000000 --- a/CUSTOMIZE.md +++ /dev/null @@ -1,168 +0,0 @@ -# Customize - -Here we will give you some tips on how to customize the website. One important thing to note is that **ALL** the changes you make should be done on the **main** branch of your repository. The `gh-pages` branch is automatically overwritten every time you make a change to the main branch. - -Note that throughout the [README.md](README.md) and [CUSTOMIZE.md](CUSTOMIZE.md) files, the default language is English (LANG = en-us). You must have an equivalent file or path for each language you have defined in [\_config.yml](_config.yml). For example, if you have defined `languages: ["en-us", "pt-br"]`, you must have 2 versions of the file `_data/LANG/cv.yml`: [\_data/en-us/cv.yml](_data/en-us/cv.yml) and [\_data/pt-br/cv.yml](_data/pt-br/cv.yml). - -## Project structure - -The project is structured as follows, focusing on the main components that you will need to modify: - -```txt -. -├── 📂 assets/: contains the assets that are displayed in the website -│   └── 📂 json/ -│    └── 📄 resume_LANG.json: CV in JSON format (https://jsonresume.org/) -├── 📂 _bibliography/ -│   └── 📄 papers.bib: bibliography in BibTeX format -├── 📄 _config.yml: the configuration file of the template -├── 📂 _data/: contains some of the data used in the template -│ ├── 📂 LANG/: data for the LANG version. Must have one for each language defined in _config.yml -│   │ ├── 📄 cv.yml: CV in YAML format, used when assets/json/resume_LANG.json is not found -| | └── 📄 strings.yml: localized variables (placeholders). Must have one for each language defined in _config.yml -│   └── 📄 repositories.yml: users and repositories info in YAML format -├── 📂 _includes/: contains code parts that are included in the main HTML file -│   └── 📄 news.liquid: defines the news section layout in the about page -├── 📂 _layouts/: contains the layouts to choose from in the frontmatter of the Markdown files -├── 📂 _news/: the news that will appear in the news section in the about page -│ └── 📂 LANG/: must have one for each language defined in _config.yml -├── 📂 _pages/: contains the pages of the website -│ └── 📂 LANG/: must have one for each language defined in _config.yml -| └── 📄 404.md: 404 page (page not found) -├── 📂 _posts/: contains the blog posts -│ └── 📂 LANG/: must have one for each language defined in _config.yml -├── 📂 _projects/: contains the projects -│ └── 📂 LANG/: must have one for each language defined in _config.yml -└── 📂 _sass/: contains the SASS files that define the style of the website - ├── 📄 _base.scss: base style of the website - ├── 📄 _cv.scss: style of the CV page - ├── 📄 _distill.scss: style of the Distill articles - ├── 📄 _layout.scss: style of the overall layout - ├── 📄 _themes.scss: themes colors and a few icons - └── 📄 _variables.scss: variables used in the SASS files -``` - -## Configuration - -The configuration file [\_config.yml](_config.yml) contains the main configuration of the website. Most of the settings is self-explanatory and we also tried to add as much comments as possible. If you have any questions, please check if it was not already answered in the [FAQ](FAQ.md). - -> Note that the `url` and `baseurl` settings are used to generate the links of the website, as explained in the [install instructions](INSTALL.md). - -All changes made to this file are only visible after you rebuild the website. That means that you need to run `bundle exec jekyll serve` again if you are running the website locally or push your changes to GitHub if you are using GitHub Pages. All other changes are visible immediately, you only need to refresh the page. - -## Displaying countries flags - -To display countries flags instead of the language initials in the header, you can set `country_flag: true` in the [\_config.yml](_config.yml) file. You should also add the countries' svg flags in the [assets/img/flags/](assets/img/flags/) directory. You can find the flags in the [flag-icons repository](https://github.com/lipis/flag-icons/tree/main/flags). When selecting the flags, the code uses the last part (after the `-`) of the site languages. So when looking for the flag of the language `pt-br`, the code will look for the file `br.svg` in the [assets/img/flags/](assets/img/flags/) directory. - -![Use country flag instead of language name](readme_preview/country_flag.png) - -## Modifying the CV information - -There are currently 2 different ways of generating the CV page content. The first one is by using a json file located in [assets/json/resume_LANG.json](assets/json/resume_en-us.json). It is a [known standard](https://jsonresume.org/) for creating a CV programmatically. The second one, currently used as a fallback when the json file is not found, is by using a yml file located in [\_data/LANG/cv.yml](_data/en-us/cv.yml). This was the original way of creating the CV page content and since it is more human readable than a json file we decided to keep it as an option. - -What this means is, if there is no resume data defined in [\_config.yml](_config.yml) and loaded via a json file, it will load the contents of [\_data/LANG/cv.yml](_data/en-us/cv.yml). If you want to use the [\_data/LANG/cv.yml](_data/en-us/cv.yml) file as the source of your CV, you must delete the [assets/json/resume_LANG.json](assets/json/resume_en-us.json) file. - -## Modifying the user and repository information - -The user and repository information is defined in [\_data/repositories.yml](_data/repositories.yml). You can add as many users and repositories as you want. Both informations are used in the `repositories` section. - -## Creating new pages - -You can create new pages by adding new Markdown files in the [\_pages](_pages/) directory. The easiest way to do this is to copy an existing page and modify it. You can choose the layout of the page by changing the [layout](https://jekyllrb.com/docs/layouts/) attribute in the [frontmatter](https://jekyllrb.com/docs/front-matter/) of the Markdown file, and also the path to access it by changing the [permalink](https://jekyllrb.com/docs/permalinks/) attribute. You can also add new layouts in the [\_layouts](_layouts/) directory if you feel the need for it. To have the page be displayed for different languages, simply create one markdown file with the same name in each language. It is possible to [use different permalinks per language](https://github.com/untra/polyglot?tab=readme-ov-file#using-different-permalinks-per-language) if you want to. - -## Creating new blog posts - -To create a new blog post, you can add a new Markdown file in the [\_posts/LANG/](_posts/en-us/) directory. The [name of the file must follow](https://jekyllrb.com/docs/posts/#creating-posts) the format `YYYY-MM-DD-title.md`. The easiest way to do this is to copy an existing blog post and modify it. Note that some blog posts have optional fields in the [frontmatter](https://jekyllrb.com/docs/front-matter/) that are used to enable specific behaviors or functions. - -If you want to create blog posts that are not ready to be published, but you want to track it with git, you can create a [\_drafts](https://jekyllrb.com/docs/posts/#drafts) directory and store them there. - -## Creating new projects - -You can create new projects by adding new Markdown files in the [\_projects/LANG/](_projects/en-us/) directory. The easiest way to do this is to copy an existing project and modify it. - -## Adding some news - -You can add news in the about page by adding new Markdown files in the [\_news/LANG/](_news/en-us/) directory. There are currently two types of news: inline news and news with a link. News with a link take you to a new page while inline news are displayed directly in the about page. The easiest way to create yours is to copy an existing news and modify it. - -## Adding Collections - -This Jekyll theme implements `collections` to let you break up your work into categories. The theme comes with two default collections: `news` and `projects`. Items from the `news` collection are automatically displayed on the home page. Items from the `projects` collection are displayed on a responsive grid on projects page. - -You can easily create your own collections, apps, short stories, courses, or whatever your creative work is. To do this, edit the collections in the [\_config.yml](_config.yml) file, create a corresponding folder, and create a landing page for your collection, similar to [\_pages/LANG/projects.md](_pages/en-us/projects.md). - -## Adding a new publication - -To add publications create a new entry in the [\_bibliography/papers.bib](_bibliography/papers.bib) file. You can find the BibTeX entry of a publication in Google Scholar by clicking on the quotation marks below the publication title, then clicking on "BibTeX", or also in the conference page itself. By default, the publications will be sorted by year and the most recent will be displayed first. You can change this behavior and more in the `Jekyll Scholar` section in [\_config.yml](_config.yml) file. - -You can add extra information to a publication, like a PDF file in the `assets/pdfs/` directory and add the path to the PDF file in the BibTeX entry with the `pdf` field. Some of the supported fields are: `abstract`, `altmetric`, `annotation`, `arxiv`, `bibtex_show`, `blog`, `code`, `dimensions`, `doi`, `eprint`, `html`, `isbn`, `pdf`, `pmid`, `poster`, `slides`, `supp`, `video`, and `website`. - -### Author annotation - -In publications, the author entry for yourself is identified by string array `scholar:last_name` and string array `scholar:first_name` in [\_config.yml](_config.yml). For example, if you have the following entry in your [\_config.yml](_config.yml): - -```yaml -scholar: - last_name: [Einstein] - first_name: [Albert, A.] -``` - -If the entry matches one form of the last names and the first names, it will be underlined. Keep meta-information about your co-authors in [\_data/coauthors.yml](_data/coauthors.yml) and Jekyll will insert links to their webpages automatically. The co-author data format is as follows, - -```yaml -"adams": - - firstname: ["Edwin", "E.", "E. P.", "Edwin Plimpton"] - url: https://en.wikipedia.org/wiki/Edwin_Plimpton_Adams - -"podolsky": - - firstname: ["Boris", "B.", "B. Y.", "Boris Yakovlevich"] - url: https://en.wikipedia.org/wiki/Boris_Podolsky - -"rosen": - - firstname: ["Nathan", "N."] - url: https://en.wikipedia.org/wiki/Nathan_Rosen - -"bach": - - firstname: ["Johann Sebastian", "J. S."] - url: https://en.wikipedia.org/wiki/Johann_Sebastian_Bach - - - firstname: ["Carl Philipp Emanuel", "C. P. E."] - url: https://en.wikipedia.org/wiki/Carl_Philipp_Emanuel_Bach -``` - -If the entry matches one of the combinations of the last names and the first names, it will be highlighted and linked to the url provided (see [related discussion](https://github.com/alshedivat/al-folio/discussions/2213)). - -### Buttons (through custom bibtex keywords) - -There are several custom bibtex keywords that you can use to affect how the entries are displayed on the webpage: - -- `abbr`: Adds an abbreviation to the left of the entry. You can add links to these by creating a venue.yaml-file in the \_data folder and adding entries that match. -- `abstract`: Adds an "Abs" button that expands a hidden text field when clicked to show the abstract text -- `altmetric`: Adds an [Altmetric](https://www.altmetric.com/) badge (Note: if DOI is provided just use `true`, otherwise only add the altmetric identifier here - the link is generated automatically) -- `annotation`: Adds a popover info message to the end of the author list that can potentially be used to clarify superscripts. HTML is allowed. -- `arxiv`: Adds a link to the Arxiv website (Note: only add the arxiv identifier here - the link is generated automatically) -- `bibtex_show`: Adds a "Bib" button that expands a hidden text field with the full bibliography entry -- `blog`: Adds a "Blog" button redirecting to the specified link -- `code`: Adds a "Code" button redirecting to the specified link -- `dimensions`: Adds a [Dimensions](https://www.dimensions.ai/) badge (Note: if DOI or PMID is provided just use `true`, otherwise only add the Dimensions' identifier here - the link is generated automatically) -- `html`: Inserts an "HTML" button redirecting to the user-specified link -- `pdf`: Adds a "PDF" button redirecting to a specified file (if a full link is not specified, the file will be assumed to be placed in the /assets/pdf/ directory) -- `poster`: Adds a "Poster" button redirecting to a specified file (if a full link is not specified, the file will be assumed to be placed in the /assets/pdf/ directory) -- `slides`: Adds a "Slides" button redirecting to a specified file (if a full link is not specified, the file will be assumed to be placed in the /assets/pdf/ directory) -- `supp`: Adds a "Supp" button to a specified file (if a full link is not specified, the file will be assumed to be placed in the /assets/pdf/ directory) -- `website`: Adds a "Website" button redirecting to the specified link - -You can implement your own buttons by editing the [\_layouts/bib.liquid](_layouts/bib.liquid) file. - -## Changing theme color - -A variety of beautiful theme colors have been selected for you to choose from. The default is purple, but you can quickly change it by editing the `--global-theme-color` variable in the [\_sass/\_themes.scss](_sass/_themes.scss) file. Other color variables are listed there as well. The stock theme color options available can be found at [\_sass/\_variables.scss](_sass/_variables.scss). You can also add your own colors to this file assigning each a name for ease of use across the template. - -## Adding social media information - -You can add your social media links by adding the specified information at the `Social integration` section in the [\_config.yml](_config.yml) file. This information will appear at the bottom of the `About` page. - -## Adding a newsletter - -You can add a newsletter subscription form by adding the specified information at the `newsletter` section in the [\_config.yml](_config.yml) file. To set up a newsletter, you can use a service like [Loops.so](https://loops.so/), which is the current supported solution. Once you have set up your newsletter, you can add the form [endpoint](https://loops.so/docs/forms/custom-form) to the `endpoint` field in the `newsletter` section of the [\_config.yml](_config.yml) file. - -Depending on your specified footer behavior, the sign up form either will appear at the bottom of the `About` page and at the bottom of blogposts if `related_posts` are enabled, or in the footer at the bottom of each page. diff --git a/FAQ.md b/FAQ.md deleted file mode 100644 index df7dac61..00000000 --- a/FAQ.md +++ /dev/null @@ -1,103 +0,0 @@ -# Frequently Asked Questions - -Here are some frequently asked questions. If you have a different question, please check if it was not already answered in the Q&A section of the [GitHub Discussions](https://github.com/alshedivat/al-folio/discussions/categories/q-a) of the original al-folio. If not, feel free to ask a new question there. - -If your question is related to localization, please check if it was not already answered in the Q&A section of the [GitHub Discussions](https://github.com/george-gca/multi-language-al-folio/discussions/categories/q-a). If not, feel free to ask a new question there. - -- [After I create a new repository from this template and setup the repo, I get a deployment error. Isn't the website supposed to correctly deploy automatically?](#after-i-create-a-new-repository-from-this-template-and-setup-the-repo-i-get-a-deployment-error-isnt-the-website-supposed-to-correctly-deploy-automatically) -- [I am using a custom domain (e.g., `foo.com`). My custom domain becomes blank in the repository settings after each deployment. How do I fix that?](#i-am-using-a-custom-domain-eg-foocom-my-custom-domain-becomes-blank-in-the-repository-settings-after-each-deployment-how-do-i-fix-that) -- [My webpage works locally. But after deploying, it fails to build and throws `Unknown tag 'toc'`. How do I fix that?](#my-webpage-works-locally-but-after-deploying-it-fails-to-build-and-throws-unknown-tag-toc-how-do-i-fix-that) -- [My webpage works locally. But after deploying, it is not displayed correctly (CSS and JS are not loaded properly). How do I fix that?](#my-webpage-works-locally-but-after-deploying-it-is-not-displayed-correctly-css-and-js-are-not-loaded-properly-how-do-i-fix-that) -- [Atom feed doesn't work. Why?](#atom-feed-doesnt-work-why) -- [My site doesn't work when I enable `related_blog_posts`. Why?](#my-site-doesnt-work-when-i-enable-related_blog_posts-why) -- [When trying to deploy, it's asking for github login credentials, which github disabled password authentication and it exits with an error. How to fix?](#when-trying-to-deploy-its-asking-for-github-login-credentials-which-github-disabled-password-authentication-and-it-exits-with-an-error-how-to-fix) -- [When I manually run the Lighthouse Badger workflow, it fails with `Error: Input required and not supplied: token`. How do I fix that?](#when-i-manually-run-the-lighthouse-badger-workflow-it-fails-with-error-input-required-and-not-supplied-token-how-do-i-fix-that) -- [My code runs fine locally, but when I create a commit and submit it, it fails with `prettier code formatter workflow run failed for master branch`. How do I fix that?](#my-code-runs-fine-locally-but-when-i-create-a-commit-and-submit-it-it-fails-with-prettier-code-formatter-workflow-run-failed-for-master-branch-how-do-i-fix-that) -- [After I update my site with some new content, even a small change, the GitHub action throws an error or displays a warning. What happened?](#after-i-update-my-site-with-some-new-content-even-a-small-change-the-github-action-throws-an-error-or-displays-a-warning-what-happened) -- [I am trying to deploy my site, but it fails with `Could not find gem 'jekyll-diagrams' in locally installed gems`. How do I fix that?](#i-am-trying-to-deploy-my-site-but-it-fails-with-could-not-find-gem-jekyll-diagrams-in-locally-installed-gems-how-do-i-fix-that) -- [How can I update Font Awesome version on the template](#how-can-i-update-font-awesome-version-on-the-template) -- [What do all these GitHub actions/workflows mean?](#what-do-all-these-github-actionsworkflows-mean) - ---- - -#### After I create a new repository from this template and setup the repo, I get a deployment error. Isn't the website supposed to correctly deploy automatically? - -Yes, if you are using release `v0.3.5` or later, the website will automatically and correctly re-deploy right after your first commit. Please make some changes (e.g., change your website info in `_config.yml`), commit, and push. Make sure to follow [deployment instructions](https://github.com/alshedivat/al-folio#deployment). (Relevant issue: [209](https://github.com/alshedivat/al-folio/issues/209#issuecomment-798849211).) - -#### I am using a custom domain (e.g., `foo.com`). My custom domain becomes blank in the repository settings after each deployment. How do I fix that? - -You need to add `CNAME` file to the `master` or `source` branch of your repository. The file should contain your custom domain name. (Relevant issue: [130](https://github.com/alshedivat/al-folio/issues/130).) - -#### My webpage works locally. But after deploying, it fails to build and throws `Unknown tag 'toc'`. How do I fix that? - -Make sure you followed through the [deployment instructions](#deployment) in the previous section. You should have set the deployment branch to `gh-pages`. (Related issue: [1438](https://github.com/alshedivat/al-folio/issues/1438).) - -#### My webpage works locally. But after deploying, it is not displayed correctly (CSS and JS are not loaded properly). How do I fix that? - -If the website does not load the theme, the layout looks weird, and all links are broken, make sure to correctly specify the `url` and `baseurl` paths in `_config.yml`. Set `url` to `https://.github.io` or to `https://` if you are using a custom domain. If you are deploying a personal or organization website, leave `baseurl` blank. If you are deploying a project page, set `baseurl: //`. If all previous steps were done correctly, all is missing is [for your browser to fetch again the site stylesheet](https://github.com/alshedivat/al-folio/issues/1398#issuecomment-1609518404). - -#### Atom feed doesn't work. Why? - -Make sure to correctly specify the `url` and `baseurl` paths in `_config.yml`. RSS Feed plugin works with these correctly set up fields: `title`, `url`, `description` and `author`. Make sure to fill them in an appropriate way and try again. - -#### My site doesn't work when I enable `related_blog_posts`. Why? - -This is probably due to the [classifier reborn](https://github.com/jekyll/classifier-reborn) plugin, which is used to calculate related posts. If the error states `Liquid Exception: Zero vectors can not be normalized...` or `sqrt': Numerical argument is out of domain - "sqrt"`, it means that it could not calculate related posts for a specific post. This is usually caused by [empty or minimal blog posts](https://github.com/jekyll/classifier-reborn/issues/64) without meaningful words (i.e. only [stop words](https://en.wikipedia.org/wiki/Stop_words)) or even [specific characters](https://github.com/jekyll/classifier-reborn/issues/194) you used in your posts. Also, the calculus for similar posts are made for every `post`, which means every page that uses `layout: post`, including the announcements. To change this behavior, simply add `related_posts: false` to the front matter of the page you don't want to display related posts on. Another solution is to disable the lsi (latent semantic indexing) entirely by setting the `lsi` flag to `false` in `_config.yml`. Related issue: [#1828](https://github.com/alshedivat/al-folio/issues/1828). - -#### When trying to deploy, it's asking for github login credentials, which github disabled password authentication and it exits with an error. How to fix? - -Open .git/config file using your preferred editor. Change the `https` portion of the `url` variable to `ssh`. Try deploying again. - -#### When I manually run the [Lighthouse Badger](https://github.com/alshedivat/al-folio/actions/workflows/lighthouse-badger.yml) workflow, it fails with `Error: Input required and not supplied: token`. How do I fix that? - -You need to [create a personal access token](https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/managing-your-personal-access-tokens#creating-a-fine-grained-personal-access-token) and [add it as a secret](https://docs.github.com/en/actions/security-guides/using-secrets-in-github-actions#creating-encrypted-secrets-for-a-repository) named `LIGHTHOUSE_BADGER_TOKEN` to your repository. For more information, check [lighthouse-badger documentation](https://github.com/MyActionWay/lighthouse-badger-workflows#lighthouse-badger-easyyml) on how to do this. - -#### My code runs fine locally, but when I create a commit and submit it, it fails with `prettier code formatter workflow run failed for master branch`. How do I fix that? - -We implemented support for [Prettier code formatting](https://prettier.io/) in [#2048](https://github.com/alshedivat/al-folio/pull/2048). It basically ensures that your code is well formatted. If you want to ensure your code is compliant with `Prettier` you can install it in your computer [integrated with an editor](https://prettier.io/docs/en/editors), [install it and run manually](https://prettier.io/docs/en/install), or you can disable it for your repo. For this, just delete the file [.github/workflows/prettier.yml](https://github.com/alshedivat/al-folio/blob/master/.github/workflows/prettier.yml). - -#### After I update my site with some new content, even a small change, the GitHub action throws an error or displays a warning. What happened? - -Probably your GitHub workflow is throwing an error like this: - -```bash -/opt/hostedtoolcache/Ruby/3.0.2/x64/lib/ruby/gems/3.0.0/gems/bundler-2.5.5/lib/bundler/runtime.rb:304:in `check_for_activated_spec!': You have already activated uri 0.10.1, but your Gemfile requires uri 0.13.0. Since uri is a default gem, you can either remove your dependency on it or try updating to a newer version of bundler that supports uri as a default gem. (Gem::LoadError) -``` - -or maybe displaying a warning like one of these: - -``` -Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/. -Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/. -The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/ -The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/ -``` - -If that's the case, you are using deprecated libraries/commands. This happens because you are using a very old version of al-folio. To fix this it is recommended [upgrading your code to the latest version](INSTALL.md#upgrading-from-a-previous-version) of the template. You will probably need to do some manual merging. If you find it easier, you could create a copy of your repository, do a fresh installation from the template and reapply all your changes. For this I would recommend a tool like [meld](https://meldmerge.org/) or [winmerge](https://winmerge.org/) to check the differences between directories/files. - -Note that libraries tend to be deprecated and support for them dropped as they are no longer maintained, and keep using them involves security breaches. Also, some of these deprecations are enforced, for example, by GitHub itself, so there's so much we can do. We have also added tons of new functionality, as well as tidying things up and improving the overall speed and structure, so you could also benefit from these improvements. - -#### I am trying to deploy my site, but it fails with `Could not find gem 'jekyll-diagrams' in locally installed gems`. How do I fix that? - -`jekyll-diagrams` support was dropped in [#1992](https://github.com/alshedivat/al-folio/pull/1992) in favor of using `mermaid.js` directly. Simply [update your code](INSTALL.md#upgrading-from-a-previous-version) to get the latest changes. - -#### How can I update Font Awesome version on the template - -To update the Font Awesome version, you need to download the latest release "for the web" from the [Font Awesome website](https://fontawesome.com/download). After downloading, extract the zip file and copy the `scss/` directory content to `_sass/font-awesome/` and the `webfonts/` content to `assets/webfonts/`. - -#### What do all these GitHub actions/workflows mean? - -GitHub actions are a way to automate tasks in the repository. They are defined in `.github/workflows/` directory. Each file in this directory is a workflow. Workflows are made up of one or more jobs, and each job runs on a virtual machine hosted by GitHub. You can see the status of the workflows in the `Actions` tab of your repository. For more information, check the [GitHub Actions documentation](https://docs.github.com/en/actions). - -Currently we have the following workflows: - -- `axe.yml`: does some accessibility testing in your site. It uses the [axe cli](https://github.com/dequelabs/axe-core-npm/tree/develop/packages/cli) tool with a chrome driver to render the webpage and allow the analysis. Must be run manually, since fixing some of the issues is not straightforward -- `broken-links-site.yml`: checks for broken links in your built website with the [lychee-action](https://github.com/lycheeverse/lychee-action) -- `broken-links.yml`: checks for broken links in your repository with the [lychee-action](https://github.com/lycheeverse/lychee-action) -- `deploy-docker-tag.yml`: adds some metadata to the docker image and pushes it to Docker Hub -- `deploy-image.yml`: deploys a new docker image with the latest changes to Docker Hub -- `deploy.yml`: deploys the website to GitHub Pages -- `docker-slim.yml`: deploys a smaller version of the docker image to Docker Hub with the [docker-slim-action](https://github.com/kitabisa/docker-slim-action) -- `lighthouse-badger.yml`: runs a [lighthouse](https://github.com/GoogleChrome/lighthouse) test for your site with the [lighthouse-badger-action](https://github.com/MyActionWay/lighthouse-badger-action), saving the results in the repository for easy inspecting, as can be seen [here](https://github.com/alshedivat/al-folio?tab=readme-ov-file#lighthouse-pagespeed-insights). For more information on how to enable this workflow, check our [FAQ question about it](https://github.com/alshedivat/al-folio/blob/master/FAQ.md#when-i-manually-run-the-lighthouse-badger-workflow-it-fails-with-error-input-required-and-not-supplied-token-how-do-i-fix-that) -- `prettier-comment-on-pr.yml`: not working. For now, this action is disabled. It was supposed to run prettier on the PRs and comment on them with the changes needed. For more information, check [issue 2115](https://github.com/alshedivat/al-folio/issues/2115) -- `prettier.yml`: runs [prettier](https://prettier.io/) on the code to ensure it is well formatted. For more information, check our [FAQ question about it](https://github.com/alshedivat/al-folio/blob/master/FAQ.md#my-code-runs-fine-locally-but-when-i-create-a-commit-and-submit-it-it-fails-with-prettier-code-formatter-workflow-run-failed-for-master-branch-how-do-i-fix-that) diff --git a/Gemfile.lock b/Gemfile.lock index c452597d..e21209d3 100644 --- a/Gemfile.lock +++ b/Gemfile.lock @@ -11,8 +11,8 @@ GEM minitest (>= 5.1) mutex_m tzinfo (~> 2.0) - addressable (2.8.6) - public_suffix (>= 2.0.2, < 6.0) + addressable (2.8.7) + public_suffix (>= 2.0.2, < 7.0) base64 (0.2.0) bibtex-ruby (6.1.0) latex-decode (~> 0.0) @@ -27,7 +27,7 @@ GEM fast-stemmer (~> 1.0) matrix (~> 0.4) colorator (1.1.0) - concurrent-ruby (1.2.3) + concurrent-ruby (1.3.3) connection_pool (2.4.1) crass (1.0.6) csl (1.6.0) @@ -50,12 +50,11 @@ GEM feedjira (3.2.3) loofah (>= 2.3.1, < 3) sax-machine (>= 1.0, < 2) - ffi (1.16.3) + ffi (1.17.0-x86_64-linux-gnu) forwardable-extended (2.6.0) gemoji (4.1.0) - google-protobuf (4.26.1-aarch64-linux) - rake (>= 13) - google-protobuf (4.26.1-x86_64-linux) + google-protobuf (4.27.1-x86_64-linux) + bigdecimal rake (>= 13) html-pipeline (2.14.3) activesupport (>= 2) @@ -137,7 +136,6 @@ GEM kramdown-parser-gfm (1.1.0) kramdown (~> 2.0) latex-decode (0.4.0) - libv8-node (21.7.2.0-aarch64-linux) libv8-node (21.7.2.0-x86_64-linux) liquid (4.0.4) listen (3.9.0) @@ -157,28 +155,22 @@ GEM mutex_m (0.2.0) namae (1.2.0) racc (~> 1.7) - nokogiri (1.16.5-aarch64-linux) - racc (~> 1.4) nokogiri (1.16.5-x86_64-linux) racc (~> 1.4) pathutil (0.16.2) forwardable-extended (~> 2.6) - public_suffix (5.0.5) + public_suffix (6.0.0) racc (1.7.3) rake (13.2.1) rb-fsevent (0.11.2) - rb-inotify (0.10.1) + rb-inotify (0.11.1) ffi (~> 1.0) rexml (3.2.8) - strscan (>= 3.0.9) - rouge (4.2.1) + rouge (4.3.0) safe_yaml (1.0.5) - sass-embedded (1.77.0-aarch64-linux-gnu) - google-protobuf (>= 3.25, < 5.0) - sass-embedded (1.77.0-x86_64-linux-gnu) + sass-embedded (1.77.5-x86_64-linux-gnu) google-protobuf (>= 3.25, < 5.0) sax-machine (1.3.2) - strscan (3.1.0) terminal-table (3.0.2) unicode-display_width (>= 1.1.1, < 3) tzinfo (2.0.6) @@ -190,7 +182,6 @@ GEM webrick (1.8.1) PLATFORMS - aarch64-linux x86_64-linux-gnu DEPENDENCIES @@ -221,4 +212,4 @@ DEPENDENCIES webrick BUNDLED WITH - 2.5.7 + 2.5.14 diff --git a/INSTALL.md b/INSTALL.md deleted file mode 100644 index 602cf788..00000000 --- a/INSTALL.md +++ /dev/null @@ -1,232 +0,0 @@ -# Table of Contents - -- [Table of Contents](#table-of-contents) -- [Installing and Deploying](#installing-and-deploying) - - [Recommended Approach](#recommended-approach) - - [Local setup on Windows](#local-setup-on-windows) - - [Local setup using Docker (Recommended)](#local-setup-using-docker-recommended) - - [Build your own docker image](#build-your-own-docker-image) - - [Local Setup with Development Containers](#local-setup-with-development-containers) - - [Local Setup (Legacy, no longer supported)](#local-setup-legacy-no-longer-supported) - - [Deployment](#deployment) - - [For personal and organization webpages](#for-personal-and-organization-webpages) - - [For project pages](#for-project-pages) - - [Enabling automatic deployment](#enabling-automatic-deployment) - - [Manual deployment to GitHub Pages](#manual-deployment-to-github-pages) - - [Deployment to another hosting server (non GitHub Pages)](#deployment-to-another-hosting-server-non-github-pages) - - [Deployment to a separate repository (advanced users only)](#deployment-to-a-separate-repository-advanced-users-only) - - [Upgrading from a previous version](#upgrading-from-a-previous-version) - -# Installing and Deploying - -## Recommended Approach - -The recommended approach for using **al-folio** is to first create your own site using the template with as few changes as possible, and only when it is up and running customize it however you like. This way it is easier to pinpoint what causes a potential issue in case of a bug. The minimum steps required to create your own site are: - -1. Create a new repository using this template. For this, click on [Use this template -> Create a new repository](https://github.com/new?template_name=multi-language-al-folio&template_owner=george-gca) above the file list. If you plan to upload your site to `.github.io`, note that the name of your repository :warning: **MUST BE** :warning: `.github.io` or `.github.io`, as stated in the [GitHub pages docs](https://docs.github.com/en/pages/getting-started-with-github-pages/about-github-pages#types-of-github-pages-sites). -2. In this new repository, go to `Settings -> Actions -> General -> Workflow permissions` and give `Read and write permissions` to GitHub Actions. -3. Open file `_config.yml`, set `url` to `https://.github.io` and leave `baseurl` **empty** (do NOT delete it). -4. Wait until the GitHub actions finish (check your repository **Actions** tab). Now, in addition to the master branch, your repository has a newly built gh-pages branch. -5. Finally, in the repository page go to `Settings -> Pages -> Build and deployment`, make sure that `Source` is set to `Deploy from a branch` and set the branch to `gh-pages` (NOT to master). -6. Wait until the GitHub actions finish (check your repository **Actions** tab), then simply navigate to `https://.github.io` in your browser. At this point you should see a copy of the theme's [demo website](https://george-gca.github.io/multi-language-al-folio/). - -After everything is set up, you can download the repository to your machine and start customizing it. To do so, run the following commands: - -```bash -$ git clone git@github.com:/.git -``` - -Starting version [v0.3.5](https://github.com/alshedivat/al-folio/releases/tag/v0.3.5), **al-folio** will automatically re-deploy your webpage each time you push new changes to your repository! :sparkles: - -## Local setup on Windows - -If you are using Windows, it is **highly recommended** to use [Windows Subsystem for Linux (WSL)](https://learn.microsoft.com/en-us/windows/wsl/install), which is a compatibility layer for running Linux on top of Windows. You can follow [these instructions](https://ubuntu.com/tutorials/install-ubuntu-on-wsl2-on-windows-11-with-gui-support) to install WSL and Ubuntu on your machine. You only need to go up to the step 4 of the tutorial (you don't have to enable the optional `systemd` nor the graphical applications), and then you can follow the instructions below to install docker. You can install docker natively on Windows as well, but it has been having some issues as can be seen in [#1540](https://github.com/alshedivat/al-folio/issues/1540), [#2007](https://github.com/alshedivat/al-folio/issues/2007). - -## Local setup using Docker (Recommended) - -Using Docker to install Jekyll and Ruby dependencies is the easiest way. - -You need to take the following steps to get `al-folio` up and running on your local machine: - -- First, install [docker](https://docs.docker.com/get-docker/) and [docker-compose](https://docs.docker.com/compose/install/). -- Finally, run the following command that will pull the latest pre-built image from DockerHub and will run your website. - -```bash -$ docker compose pull -$ docker compose up -``` - -Note that when you run it for the first time, it will download a docker image of size 400MB or so. To see the template running, open your browser and go to `http://localhost:8080`. You should see a copy of the theme's demo website. - -Now, feel free to customize the theme however you like (don't forget to change the name!). Also, your changes should be automatically rendered in real-time (or maybe after a few seconds). - -> Beta: You can also use the slimmed docker image with a size below 100MBs and exact same functionality. Just use `docker compose -f docker-compose-slim.yml up` - -### Build your own docker image - -> Note: this approach is only necessary if you would like to build an older or very custom version of multi-language-al-folio. - -Build and run a new docker image using: - -```bash -$ docker compose up --build -``` - -> If you want to update jekyll, install new ruby packages, etc., all you have to do is build the image again using `--force-recreate` argument at the end of the previous command! It will download Ruby and Jekyll and install all Ruby packages again from scratch. - -If you want to use a specific docker version, you can do so by changing `latest` tag to `your_version` in `docker-compose.yaml`. For example, you might have created your website on `v0.10.0` and you want to stick with that. - -## Local Setup with Development Containers - -`al-folio` supports [Development Containers](https://containers.dev/supporting). -For example, when you open the repository with Visual Studio Code (VSCode), it prompts you to install the necessary extension and automatically install everything necessary. - -## Local Setup (Legacy, no longer supported) - -For a hands-on walkthrough of running multi-language-al-folio locally without using Docker, check out [this cool blog post](https://george-gca.github.io/blog/2022/running-local-al-folio/) by one of the community members! - -Assuming you have [Ruby](https://www.ruby-lang.org/en/downloads/) and [Bundler](https://bundler.io/) installed on your system (_hint: for ease of managing ruby gems, consider using [rbenv](https://github.com/rbenv/rbenv)_), and also [Python](https://www.python.org/) and [pip](https://pypi.org/project/pip/) (_hint: for ease of managing python packages, consider using a virtual environment, like [venv](https://docs.python.org/pt-br/3/library/venv.html) or [conda](https://docs.conda.io/en/latest/)_). - -```bash -$ bundle install -# assuming pip is your Python package manager -$ pip install jupyter -$ bundle exec jekyll serve -``` - -To see the template running, open your browser and go to `http://localhost:4000`. You should see a copy of the theme's [demo website](https://george-gca.github.io/multi-language-al-folio/). Now, feel free to customize the theme however you like. After you are done, remember to **commit** your final changes. - -## Deployment - -Deploying your website to [GitHub Pages](https://pages.github.com/) is the most popular option. -Starting version [v0.3.5](https://github.com/alshedivat/al-folio/releases/tag/v0.3.5), **al-folio** will automatically re-deploy your webpage each time you push new changes to your repository **main branch**! :sparkles: - -### For personal and organization webpages - -1. The name of your repository **MUST BE** `.github.io` or `.github.io`. -2. In `_config.yml`, set `url` to `https://.github.io` and leave `baseurl` empty. -3. Set up automatic deployment of your webpage (see instructions below). -4. Make changes to your main branch, commit, and push! -5. After deployment, the webpage will become available at `.github.io`. - -### For project pages - -1. In `_config.yml`, set `url` to `https://.github.io` and `baseurl` to `//`. -2. Set up automatic deployment of your webpage (see instructions below). -3. Make changes to your main branch, commit, and push! -4. After deployment, the webpage will become available at `.github.io//`. - -### Enabling automatic deployment - -1. Click on **Actions** tab and **Enable GitHub Actions**; do not worry about creating any workflows as everything has already been set for you. -2. Go to `Settings -> Actions -> General -> Workflow permissions`, and give `Read and write permissions` to GitHub Actions -3. Make any other changes to your webpage, commit, and push to your main branch. This will automatically trigger the **Deploy** action. -4. Wait for a few minutes and let the action complete. You can see the progress in the **Actions** tab. If completed successfully, in addition to the `main` branch, your repository should now have a newly built `gh-pages` branch. **Do NOT touch this branch!** -5. Finally, in the **Settings** of your repository, in the Pages section, set the branch to `gh-pages` (**NOT** to `main`). For more details, see [Configuring a publishing source for your GitHub Pages site](https://docs.github.com/en/pages/getting-started-with-github-pages/configuring-a-publishing-source-for-your-github-pages-site#choosing-a-publishing-source). - -If you keep your site on another branch, open `.github/workflows/deploy.yml` **on the branch you keep your website on** and change `on->push->branches` and `on->pull\_request->branches` to the branch you keep your website on. This will trigger the action on pulls/pushes on that branch. The action will then deploy the website on the branch it was triggered from. - -### Manual deployment to GitHub Pages - -If you need to manually re-deploy your website to GitHub pages, go to Actions, click "Deploy" in the left sidebar, then "Run workflow." - -### Deployment to another hosting server (non GitHub Pages) - -If you decide to not use GitHub Pages and host your page elsewhere, simply run: - -```bash -$ bundle exec jekyll build -``` - -which will (re-)generate the static webpage in the `_site/` folder. -Then simply copy the contents of the `_site/` directory to your hosting server. - -If you also want to remove unused css classes from your file, run: - -```bash -$ purgecss -c purgecss.config.js -``` - -which will replace the css files in the `_site/assets/css/` folder with the purged css files. - -**Note:** Make sure to correctly set the `url` and `baseurl` fields in `_config.yml` before building the webpage. If you are deploying your webpage to `your-domain.com/your-project/`, you must set `url: your-domain.com` and `baseurl: /your-project/`. If you are deploying directly to `your-domain.com`, leave `baseurl` blank, **do not delete it**. - -### Deployment to a separate repository (advanced users only) - -**Note:** Do not try using this method unless you know what you are doing (make sure you are familiar with [publishing sources](https://help.github.com/en/github/working-with-github-pages/about-github-pages#publishing-sources-for-github-pages-sites)). This approach allows to have the website's source code in one repository and the deployment version in a different repository. - -Let's assume that your website's publishing source is a `publishing-source` subdirectory of a git-versioned repository cloned under `$HOME/repo/`. -For a user site this could well be something like `$HOME/.github.io`. - -Firstly, from the deployment repo dir, checkout the git branch hosting your publishing source. - -Then from the website sources dir (commonly your multi-language-al-folio fork's clone): - -```bash -$ bundle exec jekyll build --destination $HOME/repo/publishing-source -``` - -This will instruct jekyll to deploy the website under `$HOME/repo/publishing-source`. - -**Note:** Jekyll will clean `$HOME/repo/publishing-source` before building! - -The quote below is taken directly from the [jekyll configuration docs](https://jekyllrb.com/docs/configuration/options/): - -> Destination folders are cleaned on site builds -> -> The contents of `` are automatically cleaned, by default, when the site is built. Files or folders that are not created by your site will be removed. Some files could be retained by specifying them within the `` configuration directive. -> -> Do not use an important location for ``; instead, use it as a staging area and copy files from there to your web server. - -If `$HOME/repo/publishing-source` contains files that you want jekyll to leave untouched, specify them under `keep_files` in `_config.yml`. -In its default configuration, multi-language-al-folio will copy the top-level `README.md` to the publishing source. If you want to change this behavior, add `README.md` under `exclude` in `_config.yml`. - -**Note:** Do _not_ run `jekyll clean` on your publishing source repo as this will result in the entire directory getting deleted, irrespective of the content of `keep_files` in `_config.yml`. - -## Upgrading from a previous version - -If you installed **al-folio** as described above, you can configure a [GitHub action](https://github.com/AndreasAugustin/actions-template-sync) to automatically sync your repository with the latest version of the theme. - -Go to Settings -> Actions -> General -> Workflow permissions, give Read and write permissions to GitHub Actions, check "Allow GitHub Actions to create and approve pull requests", and save your changes. - -Then go to Actions -> New workflow -> set up a workflow yourself, setup the following workflow and commit your changes: - -```yaml -name: Sync from template -on: - # cronjob trigger - schedule: - - cron: "0 0 1 * *" - # manual trigger - workflow_dispatch: -jobs: - repo-sync: - runs-on: ubuntu-latest - steps: - # To use this repository's private action, you must check out the repository - - name: Checkout - uses: actions/checkout@v4 - - name: actions-template-sync - uses: AndreasAugustin/actions-template-sync@v1 - with: - github_token: ${{ secrets.GITHUB_TOKEN }} - source_repo_path: george-gca/multi-language-al-folio - upstream_branch: master -``` - -You will receive a pull request within your repository if there are some changes available in the template. - -Another option is to manually update your code by following the steps below: - -```bash -# Assuming the current directory is -$ git remote add upstream https://github.com/george-gca/multi-language-al-folio.git -$ git fetch upstream -$ git rebase v0.11.0 -``` - -If you have extensively customized a previous version, it might be trickier to upgrade. -You can still follow the steps above, but `git rebase` may result in merge conflicts that must be resolved. -See [git rebase manual](https://help.github.com/en/github/using-git/about-git-rebase) and how to [resolve conflicts](https://help.github.com/en/github/using-git/resolving-merge-conflicts-after-a-git-rebase) for more information. -If rebasing is too complicated, we recommend re-installing the new version of the theme from scratch and port over your content and changes from the previous version manually. You can use tools like [meld](https://meldmerge.org/) -or [winmerge](https://winmerge.org/) to help in this process. diff --git a/_bibliography/papers.bib b/_bibliography/papers.bib index bf532eb5..bc878f8c 100644 --- a/_bibliography/papers.bib +++ b/_bibliography/papers.bib @@ -1,114 +1,1462 @@ --- --- -@string{aps = {American Physical Society,}} - -@book{einstein1920relativity, - title={Relativity: the Special and General Theory}, - author={Einstein, Albert}, - year={1920}, - publisher={Methuen & Co Ltd}, - html={relativity.html} -} - -@book{einstein1956investigations, - bibtex_show={true}, - title={Investigations on the Theory of the Brownian Movement}, - author={Einstein, Albert}, - year={1956}, - publisher={Courier Corporation}, - preview={brownian-motion.gif} -} - -@article{einstein1950meaning, - abbr={AJP}, - bibtex_show={true}, - title={The meaning of relativity}, - author={Einstein, Albert and Taub, AH}, - journal={American Journal of Physics}, - volume={18}, - number={6}, - pages={403--404}, - year={1950}, - publisher={American Association of Physics Teachers} -} - -@article{PhysRev.47.777, - abbr={PhysRev}, - title={Can Quantum-Mechanical Description of Physical Reality Be Considered Complete?}, - author={Einstein*†, A. and Podolsky*, B. and Rosen*, N.}, - abstract={In a complete theory there is an element corresponding to each element of reality. A sufficient condition for the reality of a physical quantity is the possibility of predicting it with certainty, without disturbing the system. In quantum mechanics in the case of two physical quantities described by non-commuting operators, the knowledge of one precludes the knowledge of the other. Then either (1) the description of reality given by the wave function in quantum mechanics is not complete or (2) these two quantities cannot have simultaneous reality. Consideration of the problem of making predictions concerning a system on the basis of measurements made on another system that had previously interacted with it leads to the result that if (1) is false then (2) is also false. One is thus led to conclude that the description of reality as given by a wave function is not complete.}, - journal={Phys. Rev.}, - location={New Jersey}, - volume={47}, - issue={10}, - pages={777--780}, - numpages={0}, - year={1935}, - month={May}, - publisher=aps, - doi={10.1103/PhysRev.47.777}, - url={http://link.aps.org/doi/10.1103/PhysRev.47.777}, - html={https://journals.aps.org/pr/abstract/10.1103/PhysRev.47.777}, - pdf={example_pdf.pdf}, - altmetric={248277}, - dimensions={true}, - google_scholar_id={qyhmnyLat1gC}, - video={https://www.youtube-nocookie.com/embed/aqz-KE-bpKQ}, - additional_info={. *More Information* can be [found here](https://github.com/alshedivat/al-folio/)}, - annotation={* Example use of superscripts
† Albert Einstein}, - selected={true} -} - -@article{einstein1905molekularkinetischen, - title={{\"U}ber die von der molekularkinetischen Theorie der W{\"a}rme geforderte Bewegung von in ruhenden Fl{\"u}ssigkeiten suspendierten Teilchen}, - author={Einstein, A.}, - journal={Annalen der physik}, - volume={322}, - number={8}, - pages={549--560}, - year={1905}, - publisher={Wiley Online Library} -} - -@article{einstein1905movement, - abbr={Ann. Phys.}, - title={Un the movement of small particles suspended in statiunary liquids required by the molecular-kinetic theory 0f heat}, - author={Einstein, A.}, - journal={Ann. Phys.}, - volume={17}, - pages={549--560}, - year={1905} -} - -@article{einstein1905electrodynamics, - title={On the electrodynamics of moving bodies}, - author={Einstein, A.}, - year={1905} -} - -@Article{einstein1905photoelectriceffect, - bibtex_show={true}, - abbr={Ann. Phys.}, - title="{{\"U}ber einen die Erzeugung und Verwandlung des Lichtes betreffenden heuristischen Gesichtspunkt}", - author={Albert Einstein}, - abstract={This is the abstract text.}, - journal={Ann. Phys.}, - volume={322}, - number={6}, - pages={132--148}, - year={1905}, - doi={10.1002/andp.19053220607}, - award={Albert Einstein receveid the **Nobel Prize in Physics** 1921 *for his services to Theoretical Physics, and especially for his discovery of the law of the photoelectric effect*}, - award_name={Nobel Prize} -} - -@book{przibram1967letters, - bibtex_show={true}, - title={Letters on wave mechanics}, - author={Einstein, Albert and Schrödinger, Erwin and Planck, Max and Lorentz, Hendrik Antoon and Przibram, Karl}, - year={1967}, - publisher={Vision}, - preview={wave-mechanics.gif}, - abbr={Vision} +@article{pena_gonzalez_practical_2021, + title = {Practical metagenomics: {The} {Study} of human gut microbiome in health and disease: {Applications} in {Acute} {Diarrheal} {Diseases} ({ADD})}, + volume = {10}, + copyright = {http://creativecommons.org/licenses/by/4.0/}, + shorttitle = {{\textless}p{\textgreater}{Practical} metagenomics}, + url = {https://f1000research.com/documents/10-861}, + doi = {10.7490/f1000research.1118763.1}, + abstract = {This CABANA e-Learning tutorial will guide you through the analysis of shotgun metagenomic datasets derived from clinical samples (stool) in a practical way using command line and graphical user interfaces (GUIs). You might want to use this workflow as a guide through the different analyses. Keep in mind that since this tutorial is mainly designed for educational purposes, we performed an initial data subsampling step. However, for regular studies we encourage the use of complete datasets.}, + language = {en}, + number = {861}, + urldate = {2024-01-22}, + journal = {F1000Research}, + author = {Peña González, Angela and Reyes Muñoz, Alejandro and Madrigal Leiva, Alejandro}, + month = aug, + year = {2021}, + note = {Number: 861 +Publisher: F1000 Research Limited}, + pages = {861}, + file = {Full Text PDF:/home/acs98/Zotero/storage/VTV8GEBU/Gonzalez et al. - 2021 - Practical metagenomics The Study of human gut .pdf:application/pdf}, } + +@article{pena_gonzalez_essentials_2020, + title = {Essentials in {Metagenomics} ({Part} {II})}, + volume = {9}, + copyright = {http://creativecommons.org/licenses/by/4.0/}, + url = {https://f1000research.com/documents/9-1195}, + doi = {10.7490/f1000research.1118334.1}, + abstract = {With the development of high-throughput next generation sequencing technologies and the technical advances to generate high-quality sequencing data, the bottleneck in implementing metagenomics for economic and social purposes in Latin America has shifted from obtaining DNA sequences to post-sequencing data analysis. Latin American countries still face challenges to develop and implement strategies for local data processing and data mining due to the limited bioinformatics capacity. Although many large computing grids already exist, outsourcing analyses and computing is not always the best solution since data transfer requires significant bandwidth due to the file sizes, and more importantly, it limits the training of local researchers to perform cutting-edge bioinformatics. Therefore, developing learning material in data processing and analysis in metagenomics is critical to the formation of new highly-skilled bioinformaticians. +The present document is a tutorial in essential aspects of metagenomics data processing (post- sequencing) which was structured based on an extensive literature review, with the goal of presenting the current bioinformatics tools and workflows for extracting relevant, biological information out of a large sequencing data set. This is the second of a two-part series of documents designed to provide the essential background (experimental and computational) for users to approach the field of metagenomics. Users will find an overview of the different bioinformatic analyses that are commonly performed in metagenomic studies, including quality control, decontamination, coverage estimation, assembly, recovery of MAGs (metagenome- assembled genomes), taxonomic and functional classification of reads and contigs, and strain- level comparative analysis, among many other relevant topics. Users will also find rich discussions on the advantages and limitations that the different tools and methods offer and will be provided with external links and websites where additional information can be found.}, + language = {en}, + number = {1195}, + urldate = {2024-01-22}, + journal = {F1000Research}, + author = {Peña González, Angela and Reyes Muñoz, Alejandro}, + month = oct, + year = {2020}, + note = {Number: 1195 +Publisher: F1000 Research Limited}, + pages = {1195}, + file = {Full Text PDF:/home/acs98/Zotero/storage/V7BI82YC/Gonzalez and Muñoz - 2020 - Essentials in Metagenomics (Part II) .pdf:application/pdf}, +} + +@article{pena_gonzalez_analysis_2022, + title = {Analysis and exploration of microbial traits in a wet coffee fermentation experiment using {MGnify}}, + volume = {11}, + copyright = {http://creativecommons.org/licenses/by/4.0/}, + url = {https://f1000research.com/documents/11-401}, + doi = {10.7490/f1000research.1118938.1}, + abstract = {This CABANA e-Learning tutorial will guide you through the use of the EMBL-EBI web server MGnify to process and analyze multiple shotgun metagenomic datasets derived from a wet coffee fermentation process at different time points.}, + language = {en}, + number = {401}, + urldate = {2024-01-22}, + journal = {F1000Research}, + author = {Peña González, Angela and Reyes Muñoz, Alejandro}, + month = apr, + year = {2022}, + note = {Number: 401 +Publisher: F1000 Research Limited}, + pages = {401}, + file = {Full Text PDF:/home/acs98/Zotero/storage/M5BVNRYK/Peña-González and Muñoz - 2022 - Analysis and exploration of microbial traits in.pdf:application/pdf}, +} + +@article{pena_gonzalez_essentials_2020-1, + title = {Essentials in metagenomics ({Part} {I})}, + volume = {9}, + copyright = {http://creativecommons.org/licenses/by/4.0/}, + url = {https://f1000research.com/documents/9-1194}, + doi = {10.7490/f1000research.1118333.1}, + abstract = {Microbial communities play central roles in many aspects of life on earth including global geochemical cycles, natural and engineered biosystems, and health and disease of humans, animals, and plants. Metagenomics has revolutionized the study of microbes by paving the way for cultivation-independent assessments of microbial communities present in these complex ecosystems. In this sense, metagenomics can have (and is in fact having) a profound impact in several economic and social aspects of developing and developed countries, including the global surveillance of infectious diseases, disease diagnosis and treatments, food production and the protection of biodiversity. Therefore, the availability of learning material in metagenomics is critical to facilitate public health and economic development in the Americas. The present document is a guide to essential aspects of metagenomics, designed based on an extensive literature review, with the goal of presenting current principles and concepts in experimental design, sequencing technologies, data processing and statistical analysis applied to metagenomic studies in different areas. Equally important, we provide practical guidance for users with basic or no experience in the field. Users will find a concise but comprehensive introduction to the field, with important discussions and considerations to keep in mind when designing an experiment. The discussions include aspects related to sample processing, DNA extraction methods, and the technical challenges and sources of variation that must be controlled within the experimental design. Users will also find valuable information in the technical aspects behind second (Illumina/Solexa) and third generation (PacBio and Oxford Nanopore) sequencing technologies and library preparation as well as discussions on how these technologies are changing the current practices in the field of metagenomics.}, + language = {en}, + number = {1194}, + urldate = {2024-01-22}, + journal = {F1000Research}, + author = {Peña González, Angela and Reyes Muñoz, Alejandro}, + month = oct, + year = {2020}, + note = {Number: 1194 +Publisher: F1000 Research Limited}, + pages = {1194}, + file = {Full Text PDF:/home/acs98/Zotero/storage/AGSX9B55/Gonzalez and Muñoz - 2020 - Essentials in metagenomics (Part I) .pdf:application/pdf}, +} + +@article{matiz-ceron_taxonomical_2022, + title = {Taxonomical {Evaluation} of {Plant} {Chloroplastic} {Markers} by {Bayesian} {Classifier}}, + volume = {12}, + issn = {1664-462X}, + url = {https://www.frontiersin.org/articles/10.3389/fpls.2021.782663}, + doi = {10.3389/fpls.2021.782663}, + abstract = {DNA barcodes are standardized sequences that range between 400 and 800 bp, vary at different taxonomic levels, and make it possible to assign sequences to species that have been previously taxonomically characterized. Several DNA barcodes have been postulated for plants, nonetheless, their classification potential has not been evaluated for metabarcoding, and as a result, it would appear as none of them excels above the others in this area. One tool that has been widely used and served as a baseline when evaluating new approaches is Naïve Bayesian Classifiers (NBC). The present study aims at evaluating the classification power of several plant chloroplast genetic markers that have been proposed as barcodes (trnL, rpoB, rbcL, matK, psbA-trnH, and psbK) using an NBC. We performed the classification at different taxonomic levels, and identified problematic genera when resolution was desired. We propose matK and trnL as potential candidate markers with resolution up to genus level. Some problematic genera within certain families could lead to the misclassification no matter which marker is used (i.e., Aegilops, Gueldenstaedtia, Helianthus, Oryza, Shorea, Thysananthus, and Triticum). Finally, we suggest recommendations for the taxonomic identification of plants in samples with potential mixtures.}, + urldate = {2024-01-22}, + journal = {Frontiers in Plant Science}, + author = {Matiz-Ceron, Luisa and Reyes, Alejandro and Anzola, Juan}, + year = {2022}, + file = {Full Text PDF:/home/acs98/Zotero/storage/TR3K6VDV/Matiz-Ceron et al. - 2022 - Taxonomical Evaluation of Plant Chloroplastic Mark.pdf:application/pdf}, +} + +@article{pacheco-montealegre_fine_2020, + title = {Fine {Resolution} {Analysis} of {Microbial} {Communities} {Provides} {Insights} {Into} the {Variability} of {Cocoa} {Bean} {Fermentation}}, + volume = {11}, + issn = {1664-302X}, + url = {https://www.frontiersin.org/articles/10.3389/fmicb.2020.00650}, + doi = {10.3389/fmicb.2020.00650}, + abstract = {Cocoa bean fermentation is an important microbial process, where most metabolites that affect chocolate quality and aroma are generated. Production of reproducible high-quality beans is a major challenge because most fermentations occur in open containers with a lack of variable control. Here we present a study that aims to identify the effect of farm protocols, climate, and bean mass exposure, in the dynamics and composition of microbial communities. Using high-throughput sequencing of molecular markers for bacteria and yeasts, complemented with culture-based methods, we evaluated the microbial diversity and dynamics associated to spontaneous cocoa fermentation in two distinct agro-ecological zones in Colombia. The bacterial communities were classified at two levels of evolutionary relationship, at a coarse resolution (OTU-level) and at a finer resolution (oligotype-level). A total of six bacterial OTUs were present in both farms, following a microbial succession that starts with the Enterobacteraceae family (one OTU), transitioning to the Lactobacillaceae family (three OTUs), and finishing with Acetobacteraceae family (two OTUs). When undesirable practices were done, OTUs were observed at unexpected moments during the fermentation. At a finer taxonomic resolution, 48 oligotypes were identified, with 46 present in both farms. These oligotypes have different patterns of prevalence. In the case of Lactobacillaceae a high evenness was observed among oligotypes. In contrast, for Enterobacteraceae and Acetobacteraceae a high dominance of one or two oligotypes was observed, these oligotypes were the same for both farms, despite geographic location and season of sampling. When the overall fermentations were compared using correlations matrices of oligotypes abundance, they show a clear clustering by farm, suggesting that farm protocols generate a unique fingerprint in the dynamics and interactions of the microbial communities. The comparison between the upper and middle layers of the bean mass showed that environmental exposure affects the paces at which ecological successions occur, and therefore, is an important source of cocoa quality heterogeneity. In conclusion, the results presented here showed that the dynamics of microbial fermentation can be used to identify the sources of variability and evidence the need for better fermentation technologies that favor the production of reproducible high-quality cocoa beans.}, + urldate = {2024-01-22}, + journal = {Frontiers in Microbiology}, + author = {Pacheco-Montealegre, Mauricio Edilberto and Dávila-Mora, Lizeth Lorena and Botero-Rute, Lina Marcela and Reyes, Alejandro and Caro-Quintero, Alejandro}, + year = {2020}, + file = {Full Text PDF:/home/acs98/Zotero/storage/3X4ZGIG7/Pacheco-Montealegre et al. - 2020 - Fine Resolution Analysis of Microbial Communities .pdf:application/pdf}, +} + +@article{hernandez_disentangling_2021, + title = {Disentangling the {Complexity} of the {Rumen} {Microbial} {Diversity} {Through} {Fractionation} {Using} a {Sucrose} {Density} {Gradient}}, + volume = {12}, + issn = {1664-302X}, + url = {https://www.frontiersin.org/articles/10.3389/fmicb.2021.664754}, + doi = {10.3389/fmicb.2021.664754}, + abstract = {The ruminal microbial community is an important element in health, nutrition, livestock productivity, and climate impact. Despite the historic and current efforts to characterize this microbial diversity, many of its members remain unidentified, making it challenging to associate microbial groups with functions. Here we present a low-cost methodology for rumen sample treatment that separates the microbial community based on cell size, allowing for the identification of subtle compositional changes. In brief, the sample is centrifuged through a series of sucrose density gradients, and cells migrate to their corresponding density fraction. From each fraction, DNA is extracted and 16S rRNA gene amplicons are sequenced. We tested our methodology on four animals under two different conditions, fasting, and post-feeding. Each fraction was examined by confocal microscopy showing that the same sucrose fraction consistently separated similar cell-sized microorganisms independent of the animal or treatment. Microbial composition analysis using metabarcoding showed that our methodology detected low abundance bacterial families and population changes between fasting and post-feeding treatments that could not be observed by bulk DNA analysis. In conclusion, the sucrose-based method is a powerful low-cost approximation to untwine, enrich, and potentially isolate uncharacterized members of the ruminal microbiome.}, + urldate = {2024-01-22}, + journal = {Frontiers in Microbiology}, + author = {Hernández, Ruth and Jimenez, Hugo and Vargas-Garcia, Cesar and Caro-Quintero, Alejandro and Reyes, Alejandro}, + year = {2021}, + file = {Full Text PDF:/home/acs98/Zotero/storage/VIU995QZ/Hernández et al. - 2021 - Disentangling the Complexity of the Rumen Microbia.pdf:application/pdf}, +} + +@article{hernandez_functional_2022, + title = {Functional and {Phylogenetic} {Characterization} of {Bacteria} in {Bovine} {Rumen} {Using} {Fractionation} of {Ruminal} {Fluid}}, + volume = {13}, + issn = {1664-302X}, + url = {https://www.frontiersin.org/articles/10.3389/fmicb.2022.813002}, + doi = {10.3389/fmicb.2022.813002}, + abstract = {Cattle productivity depends on our ability to fully understand and manipulate the fermentation process of plant material that occurs in the bovine rumen, which ultimately leads to the improvement of animal health and increased productivity with a reduction in environmental impact. An essential step in this direction is the phylogenetic and functional characterization of the microbial species composing the ruminal microbiota. To address this challenge, we separated a ruminal fluid sample by size and density using a sucrose density gradient. We used the full sample and the smallest fraction (5\%), allowing the enrichment of bacteria, to assemble metagenome-assembled genomes (MAGs). We obtained a total of 16 bacterial genomes, 15 of these enriched in the smallest fraction of the gradient. According to the recently proposed Genome Taxonomy Database (GTDB) taxonomy, these MAGs belong to Bacteroidota, Firmicutes\_A, Firmicutes, Proteobacteria, and Spirochaetota phyla. Fifteen MAGs were novel at the species level and four at the genus level. The functional characterization of these MAGs suggests differences from what is currently known from the genomic potential of well-characterized members from this complex environment. Species of the phyla Bacteroidota and Spirochaetota show the potential for hydrolysis of complex polysaccharides in the plant cell wall and toward the production of B-complex vitamins and protein degradation in the rumen. Conversely, the MAGs belonging to Firmicutes and Alphaproteobacteria showed a reduction in several metabolic pathways; however, they have genes for lactate fermentation and the presence of hydrolases and esterases related to chitin degradation. Our results demonstrate that the separation of the rumen microbial community by size and density reduced the complexity of the ruminal fluid sample and enriched some poorly characterized ruminal bacteria allowing exploration of their genomic potential and their functional role in the rumen ecosystem.}, + urldate = {2024-01-22}, + journal = {Frontiers in Microbiology}, + author = {Hernández, Ruth and Chaib De Mares, Maryam and Jimenez, Hugo and Reyes, Alejandro and Caro-Quintero, Alejandro}, + year = {2022}, + file = {Full Text PDF:/home/acs98/Zotero/storage/CLHVRA2P/Hernández et al. - 2022 - Functional and Phylogenetic Characterization of Ba.pdf:application/pdf}, +} + +@article{dutilh_editorial_2017, + title = {Editorial: {Virus} {Discovery} by {Metagenomics}: {The} ({Im})possibilities}, + volume = {8}, + issn = {1664-302X}, + shorttitle = {Editorial}, + url = {https://www.frontiersin.org/articles/10.3389/fmicb.2017.01710}, + doi = {10.3389/fmicb.2017.01710}, + urldate = {2024-01-22}, + journal = {Frontiers in Microbiology}, + author = {Dutilh, Bas E. and Reyes, Alejandro and Hall, Richard J. and Whiteson, Katrine L.}, + year = {2017}, + file = {Full Text PDF:/home/acs98/Zotero/storage/STWIMWJQ/Dutilh et al. - 2017 - Editorial Virus Discovery by Metagenomics The (I.pdf:application/pdf}, +} + +@article{borbon-garcia_captivity_2017, + title = {Captivity {Shapes} the {Gut} {Microbiota} of {Andean} {Bears}: {Insights} into {Health} {Surveillance}}, + volume = {8}, + issn = {1664-302X}, + shorttitle = {Captivity {Shapes} the {Gut} {Microbiota} of {Andean} {Bears}}, + url = {https://www.frontiersin.org/articles/10.3389/fmicb.2017.01316}, + doi = {10.3389/fmicb.2017.01316}, + abstract = {The Andean bear is an endemic species of the tropical Andes who has an almost exclusively plant-based diet. Since herbivorous mammals do not carry enzymes for fiber degradation, the establishment of symbiosis with cellulolytic microorganisms in their gastrointestinal (GI) tract is necessary to help them fulfill their nutritional needs. Furthermore, as described for other mammals, a stable, diverse, and balanced gut microbial composition is an indicator of a healthy status of the host; under disturbances this balance can be lost, leading to potential diseases of the host. The goal of this study was to describe the gut microbiota of wild and captive Andean bears and determine how habitat status influences the composition and diversity of the gut symbiotic community. Fecal samples from wild (n = 28) and captive (n = 8) Andean bears were collected in “Reserva Pantano de Martos” and “Fundación Bioandina”, Colombia. Composition and diversity analyses were performed using amplicons from the V4 region of the 16S rDNA gene sequenced using the Ion PGM platform. PICRUSt algorithm was applied to predict the gene content of the gut microbiome of wild and captive Andean bears. A total of 5,411 and 838 OTUs were identified for wild and captive bears, respectively. Captive bears contained a lower number of bacterial phyla (n = 7) compared to wild individuals (n = 9). Proteobacteria (59.03\%) and Firmicutes (14.03\%) were the phyla that contributed the most to differences between wild and captive bears (overall dissimilarity = 87.72\%). At family level, Enterobacteriaceae drove the main differences between the two groups (13.7\%). PICRUSt metagenomics predictions suggested a similar pattern of relative abundance of gene families associated with the metabolism of carbohydrates across samples in wild individuals, despite the taxonomic differences of their gut microbiota. Captivity alters the availability and diversity of food resources, which likely reduces microbiota richness and diversity compared to wild individuals. Further considerations should be taken into account for nutritional schemes improving ex-situ conservation and its potential as a surveillance tool of endangered populations of wild Andean bears.}, + urldate = {2024-01-22}, + journal = {Frontiers in Microbiology}, + author = {Borbón-García, Andrea and Reyes, Alejandro and Vives-Flórez, Martha and Caballero, Susana}, + year = {2017}, + file = {Full Text PDF:/home/acs98/Zotero/storage/HYQFKGUY/Borbón-García et al. - 2017 - Captivity Shapes the Gut Microbiota of Andean Bear.pdf:application/pdf}, +} + +@article{alves_genseed-hmm_2016, + title = {{GenSeed}-{HMM}: {A} {Tool} for {Progressive} {Assembly} {Using} {Profile} {HMMs} as {Seeds} and its {Application} in {Alpavirinae} {Viral} {Discovery} from {Metagenomic} {Data}}, + volume = {7}, + issn = {1664-302X}, + shorttitle = {{GenSeed}-{HMM}}, + url = {https://www.frontiersin.org/articles/10.3389/fmicb.2016.00269}, + doi = {10.3389/fmicb.2016.00269}, + abstract = {This work reports the development of GenSeed-HMM, a program that implements seed-driven progressive assembly, an approach to reconstruct specific sequences from unassembled data, starting from short nucleotide or protein seed sequences or profile Hidden Markov Models (HMM). The program can use any one of a number of sequence assemblers. Assembly is performed in multiple steps and relatively few reads are used in each cycle, consequently the program demands low computational resources. As a proof-of-concept and to demonstrate the power of HMM-driven progressive assemblies, GenSeed-HMM was applied to metagenomic datasets in the search for diverse ssDNA bacteriophages from the recently described Alpavirinae subfamily. Profile HMMs were built using Alpavirinae-specific regions from multiple sequence alignments (MSA) using either the viral protein 1 (VP1; major capsid protein) or VP4 (genome replication initiation protein). These profile HMMs were used by GenSeed-HMM (running Newbler assembler) as seeds to reconstruct viral genomes from sequencing datasets of human fecal samples. All contigs obtained were annotated and taxonomically classified using similarity searches and phylogenetic analyses. The most specific profile HMM seed enabled the reconstruction of 45 partial or complete Alpavirinae genomic sequences. A comparison with conventional (global) assembly of the same original dataset, using Newbler in a standalone execution, revealed that GenSeed-HMM outperformed global genomic assembly in several metrics employed. This approach is capable of detecting organisms that have not been used in the construction of the profile HMM, which opens up the possibility of diagnosing novel viruses, without previous specific information, constituting a de novo diagnosis. Additional applications include, but are not limited to, the specific assembly of extrachromosomal elements such as plastid and mitochondrial genomes from metagenomic data. Profile HMM seeds can also be used to reconstruct specific protein coding genes for gene diversity studies, and to determine all possible gene variants present in a metagenomic sample. Such surveys could be useful to detect the emergence of drug-resistance variants in sensitive environments such as hospitals and animal production facilities, where antibiotics are regularly used. Finally, GenSeed-HMM can be used as an adjunct for gap closure on assembly finishing projects, by using multiple contig ends as anchored seeds.}, + urldate = {2024-01-22}, + journal = {Frontiers in Microbiology}, + author = {Alves, João M. P. and de Oliveira, André L. and Sandberg, Tatiana O. M. and Moreno-Gallego, Jaime L. and de Toledo, Marcelo A. F. and de Moura, Elisabeth M. M. and Oliveira, Liliane S. and Durham, Alan M. and Mehnert, Dolores U. and Zanotto, Paolo M. de A. and Reyes, Alejandro and Gruber, Arthur}, + year = {2016}, + file = {Full Text PDF:/home/acs98/Zotero/storage/7WAGWX3M/Alves et al. - 2016 - GenSeed-HMM A Tool for Progressive Assembly Using.pdf:application/pdf}, +} + +@article{gonzalez-zapata_holobiont_2018, + title = {Holobiont {Diversity} in a {Reef}-{Building} {Coral} over {Its} {Entire} {Depth} {Range} in the {Mesophotic} {Zone}}, + volume = {5}, + issn = {2296-7745}, + url = {https://www.frontiersin.org/articles/10.3389/fmars.2018.00029}, + doi = {10.3389/fmars.2018.00029}, + abstract = {Mesophotic reef-building coral communities ({\textasciitilde}30–120 m depth) remain largely unexplored, despite representing roughly three-quarters of the overall depth range at which tropical coral reef ecosystems occur. Although many coral species are restricted to shallow depths, several species occur across large depth ranges, including lower mesophotic depths. Yet, it remains unclear how such species can persist under extreme low-light conditions and how the different symbiotic partners associated with these corals contribute to facilitate such broad depth ranges. We assessed holobiont genetic diversity of the Caribbean coral Agaricia undata over depth in three localities of Colombia: San Andres Island (between 37 and 85 m), Cartagena (between 17 and 45 m) and “Parque Nacional Natural Corales de Profundidad” (between 77 and 87 m). We used a population genomics approach (NextRAD) for the coral host, and amplicon sequencing for the associated Symbiodinium (non-coding region of the plastid psbA minicircle) and prokaryotic (V4 region of the 16S rRNA gene) symbiont community. For the coral host, genetic structuring was only observed across geographic regions, but not between depths. Bayesian clustering and discriminant analysis of principal components revealed genetic structuring between the three regions, but not between shallow ({\textless}30 m), upper (≥30 and ≤60 m) and lower mesophotic ({\textgreater}60 m) depths. This pattern was confirmed when evaluating pairwise differentiation (FST) between populations, with much higher values between regions (0.0467–0.1034) compared to between depths [within location; −0.0075–(−0.0007)]. Symbiotic partners, including seven types of zooxanthellae and 325 prokaryotic OTUs, did not exhibit partitioning across depths. All samples hosted Symbiodinium clade C3 and the type C3psbA\_e was present in all depths. Alpha microbial diversity was not significantly different between zones (upper vs. lower), which community composition between coral colonies was similar in the two zones (ANOSIM, R = −0.079, P {\textgreater} 0.05). The coral microbiome was dominated by Uncultured Betaproteobacteria in the order EC94 (16\%), Unknown-Bacteria (15\%), family Cenarchaeaceae (12 \%), Burkholderiaceae (10\%), and Hahellaceae (10\%). The constant coral-holobiont composition along the studied depth range suggests that identity of the symbionts is not responsible for the coral's broad depth range and adaptation to low light environments.}, + urldate = {2024-01-22}, + journal = {Frontiers in Marine Science}, + author = {Gonzalez-Zapata, Fanny L. and Bongaerts, Pim and Ramírez-Portilla, Catalina and Adu-Oppong, Boahemaa and Walljasper, Gretchen and Reyes, Alejandro and Sanchez, Juan A.}, + year = {2018}, + file = {Full Text PDF:/home/acs98/Zotero/storage/XLWFZCJ7/Gonzalez-Zapata et al. - 2018 - Holobiont Diversity in a Reef-Building Coral over .pdf:application/pdf}, +} + +@article{rodriguez-castano_advances_2017, + title = {Advances in {Gut} {Microbiome} {Research}, {Opening} {New} {Strategies} to {Cope} with a {Western} {Lifestyle}}, + volume = {7}, + issn = {1664-8021}, + url = {https://www.frontiersin.org/articles/10.3389/fgene.2016.00224}, + doi = {10.3389/fgene.2016.00224}, + abstract = {The “westernization” of global eating and lifestyle habits is associated with the growing rate of chronic diseases, mainly cardiovascular diseases, cancer, type 2 diabetes mellitus, and respiratory diseases. The primary prevention approach is to make nutritional and behavioral changes, however, there is another important determinant of our health that only recently has been considered and is the presence of beneficial microorganisms and their products in our gastrointestinal tract. Microorganisms living in our body can alter the fate of food, drugs, hormones, and xenobiotics, and recent studies point to the use of microorganisms that can counteract the harmful effects of certain compounds introduced or produced endogenously in our body. This review considers the effects of the western lifestyle on adiposity, glucose metabolism, oxidative markers and inflammation profile, emphasizes on the studies that have investigated bacterial strains and products of their metabolism that are beneficial under this lifestyle, and examines the screening strategies that recent studies are using to select the most promising probiotic isolates. In addition, we consider the relevance of studying the microbiota of metabolically healthy people under a western lifestyle for the understanding of the key components that delay the development of chronic diseases.}, + urldate = {2024-01-22}, + journal = {Frontiers in Genetics}, + author = {Rodriguez-Castaño, Gina P. and Caro-Quintero, Alejandro and Reyes, Alejandro and Lizcano, Fernando}, + year = {2017}, + file = {Full Text PDF:/home/acs98/Zotero/storage/IFC4PZRL/Rodriguez-Castaño et al. - 2017 - Advances in Gut Microbiome Research, Opening New S.pdf:application/pdf}, +} + +@article{botero_genome-scale_2020, + title = {Genome-{Scale} {Metabolic} {Model} of {Xanthomonas} phaseoli pv. manihotis: {An} {Approach} to {Elucidate} {Pathogenicity} at the {Metabolic} {Level}}, + volume = {11}, + issn = {1664-8021}, + shorttitle = {Genome-{Scale} {Metabolic} {Model} of {Xanthomonas} phaseoli pv. manihotis}, + url = {https://www.frontiersin.org/articles/10.3389/fgene.2020.00837}, + doi = {10.3389/fgene.2020.00837}, + abstract = {Xanthomonas phaseoli pv. manihotis (Xpm) is the causal agent of cassava bacterial blight, the most important bacterial disease in this crop. There is a paucity of knowledge about the metabolism of Xanthomonas and its relevance in the pathogenic process, with the exception of the elucidation of the xanthan biosynthesis route. Here we report the reconstruction of the genome-scale model of Xpm metabolism and the insights it provides into plant–pathogen interactions. The model, iXpm1556, displayed 1,556 reactions, 1,527 compounds, and 890 genes. Metabolic maps of central amino acid and carbohydrate metabolism, as well as xanthan biosynthesis of Xpm, were reconstructed using Escher (https://escher.github.io/) to guide the curation process and for further analyses. The model was constrained using the RNA-seq data of a mutant of Xpm for quorum sensing (QS), and these data were used to construct context-specific models (CSMs) of the metabolism of the two strains (wild type and QS mutant). The CSMs and flux balance analysis were used to get insights into pathogenicity, xanthan biosynthesis, and QS mechanisms. Between the CSMs, 653 reactions were shared; unique reactions belong to purine, pyrimidine, and amino acid metabolism. Alternative objective functions were used to demonstrate a trade-off between xanthan biosynthesis and growth and the re-allocation of resources in the process of biosynthesis. Important features altered by QS included carbohydrate metabolism, NAD(P)+ balance, and fatty acid elongation. In this work, we modeled the xanthan biosynthesis and the QS process and their impact on the metabolism of the bacterium. This model will be useful for researchers studying host–pathogen interactions and will provide insights into the mechanisms of infection used by this and other Xanthomonas species.}, + urldate = {2024-01-22}, + journal = {Frontiers in Genetics}, + author = {Botero, David and Monk, Jonathan and Rodríguez Cubillos, María Juliana and Rodríguez Cubillos, Andrés and Restrepo, Mariana and Bernal-Galeano, Vivian and Reyes, Alejandro and González Barrios, Andrés and Palsson, Bernhard Ø. and Restrepo, Silvia and Bernal, Adriana}, + year = {2020}, + file = {Full Text PDF:/home/acs98/Zotero/storage/NJYKMLZN/Botero et al. - 2020 - Genome-Scale Metabolic Model of Xanthomonas phaseo.pdf:application/pdf}, +} + +@article{ras_challenges_2021, + title = {Challenges and {Considerations} for {Delivering} {Bioinformatics} {Training} in {LMICs}: {Perspectives} {From} {Pan}-{African} and {Latin} {American} {Bioinformatics} {Networks}}, + volume = {6}, + issn = {2504-284X}, + shorttitle = {Challenges and {Considerations} for {Delivering} {Bioinformatics} {Training} in {LMICs}}, + url = {https://www.frontiersin.org/articles/10.3389/feduc.2021.710971}, + doi = {10.3389/feduc.2021.710971}, + urldate = {2024-01-22}, + journal = {Frontiers in Education}, + author = {Ras, Verena and Carvajal-López, Patricia and Gopalasingam, Piraveen and Matimba, Alice and Chauke, Paballo Abel and Mulder, Nicola and Guerfali, Fatma and Del Angel, Victoria Dominguez and Reyes, Alejandro and Oliveira, Guilherme and De Las Rivas, Javier and Cristancho, Marco}, + year = {2021}, + file = {Full Text PDF:/home/acs98/Zotero/storage/XMWXQTDG/Ras et al. - 2021 - Challenges and Considerations for Delivering Bioin.pdf:application/pdf}, +} + +@article{vasquez_non-extensive_2021, + title = {Non-{Extensive} {Fragmentation} of {Natural} {Products} and {Pharmacophore}-{Based} {Virtual} {Screening} as a {Practical} {Approach} to {Identify} {Novel} {Promising} {Chemical} {Scaffolds}}, + volume = {9}, + issn = {2296-2646}, + url = {https://www.frontiersin.org/articles/10.3389/fchem.2021.700802}, + doi = {10.3389/fchem.2021.700802}, + abstract = {Fragment-based drug design (FBDD) and pharmacophore modeling have proven to be efficient tools to discover novel drugs. However, these approaches may become limited if the collection of fragments is highly repetitive, poorly diverse, or excessively simple. In this article, combining pharmacophore modeling and a non-classical type of fragmentation (herein called non-extensive) to screen a natural product (NP) library may provide fragments predicted as potent, diverse, and developable. Initially, we applied retrosynthetic combinatorial analysis procedure (RECAP) rules in two versions, extensive and non-extensive, in order to deconstruct a virtual library of NPs formed by the databases Traditional Chinese Medicine (TCM), AfroDb (African Medicinal Plants database), NuBBE (Nuclei of Bioassays, Biosynthesis, and Ecophysiology of Natural Products), and UEFS (Universidade Estadual de Feira de Santana). We then developed a virtual screening (VS) using two groups of natural-product-derived fragments (extensive and non-extensive NPDFs) and two overlapping pharmacophore models for each of 20 different proteins of therapeutic interest. Molecular weight, lipophilicity, and molecular complexity were estimated and compared for both types of NPDFs (and their original NPs) before and after the VS proceedings. As a result, we found that non-extensive NPDFs exhibited a much higher number of chemical entities compared to extensive NPDFs (45,355 vs. 11,525 compounds), accounting for the larger part of the hits recovered and being far less repetitive than extensive NPDFs. The structural diversity of both types of NPDFs and the NPs was shown to diminish slightly after VS procedures. Finally, and most interestingly, the pharmacophore fit score of the non-extensive NPDFs proved to be not only higher, on average, than extensive NPDFs (56\% of cases) but also higher than their original NPs (69\% of cases) when all of them were also recognized as hits after the VS. The findings obtained in this study indicated that the proposed cascade approach was useful to enhance the probability of identifying innovative chemical scaffolds, which deserve further development to become drug-sized candidate compounds. We consider that the knowledge about the deconstruction degree required to produce NPDFs of interest represents a good starting point for eventual synthesis, characterization, and biological activity studies.}, + urldate = {2024-01-22}, + journal = {Frontiers in Chemistry}, + author = {Vásquez, Andrés Felipe and Reyes Muñoz, Alejandro and Duitama, Jorge and González Barrios, Andrés}, + year = {2021}, + file = {Full Text PDF:/home/acs98/Zotero/storage/UXPEG9TA/Vásquez et al. - 2021 - Non-Extensive Fragmentation of Natural Products an.pdf:application/pdf}, +} + +@incollection{portillo_chapter_2007, + title = {Chapter 4: {Genomics} and {Proteomics}}, + language = {en}, + booktitle = {Tuberculosis {Textbook}}, + author = {Portillo, Patricia Del and Reyes, Alejandro and Salazar, Leiria and García, María Jesús}, + year = {2007}, + file = {Portillo et al. - Chapter 4 Genomics and Proteomics.pdf:/home/acs98/Zotero/storage/MHZPXG77/Portillo et al. - Chapter 4 Genomics and Proteomics.pdf:application/pdf}, +} + +@article{reyes_temperature_2007, + title = {Temperature modifies gene expression in subcuticular epithelial cells of white spot syndrome virus-infected {Litopenaeus} vannamei}, + volume = {31}, + issn = {0145-305X}, + url = {https://www.sciencedirect.com/science/article/pii/S0145305X06000784}, + doi = {10.1016/j.dci.2006.05.003}, + abstract = {Subtractive suppressive hybridization was used to identify differentially expressed genes in subcuticular tissues from white spot syndrome virus(WSSV)-infected shrimp kept at different temperatures. Subtractive libraries I and II contained genes expressed at 26 and 33°C, respectively. Three hundred and seventy-nine insert positive clones were selected to confirm differential expression by dot-blot hybridization. Twenty-two clones from library I and eight from library II were sequenced. All sequences from Library I corresponded to white spot syndrome virus genes. From library II, five clones were homologous with previously reported expressed sequence tags of Litopenaeus vannamei, two had similarity with β-actin and one transcript represented an unknown gene. Over-expression of VP15 in shrimp at 26°C was further confirmed by real-time polymerase chain reaction (PCR), whereas β-actin expression was similar in animals kept at both temperatures. Together, our results show that hyperthermia reduces the expression of WSSV genes on shrimp subcuticular epithelial cells.}, + number = {1}, + urldate = {2024-01-22}, + journal = {Developmental \& Comparative Immunology}, + author = {Reyes, Alejandro and Salazar, Marcela and Granja, Clarissa}, + month = jan, + year = {2007}, + keywords = {Gene expression, -actin, Hyperthermia, SSH, Subcuticular epithelium, Viral proteins, White spot syndrome virus}, + pages = {23--29}, + file = {ScienceDirect Snapshot:/home/acs98/Zotero/storage/KSVTYFP2/S0145305X06000784.html:text/html}, +} + +@article{olano_mutations_2007, + title = {Mutations in {DNA} repair genes are associated with the {Haarlem} lineage of {Mycobacterium} tuberculosis independently of their antibiotic resistance}, + volume = {87}, + issn = {1472-9792}, + url = {https://www.sciencedirect.com/science/article/pii/S1472979207000637}, + doi = {10.1016/j.tube.2007.05.011}, + abstract = {The analysis of the DNA repair genes ogt and ung was carried out in 117 Mycobacterium tuberculosis clinical isolates from Argentina and Colombia in order to explore correlation between mutations in these genes and multi-drug resistance. With the exception of two Beijing family isolates, the rest of the strains harbored either two wild-type or two mutant alleles with identical single nucleotide polymorphisms (SNPs) in each gene (ogt44 and ung501). These ogt44 and ung501 mutations were not associated with multi-drug resistance and occurred simultaneously in circulating Haarlem genotype M. tuberculosis strains. We therefore propose the use of these markers as tools in phylogenetic and epidemiologic studies.}, + number = {6}, + urldate = {2024-01-22}, + journal = {Tuberculosis}, + author = {Olano, Juanita and López, Beatriz and Reyes, Alejandro and del Pilar Lemos, María and Correa, Nidia and Del Portillo, Patricia and Barrera, Lucia and Robledo, Jaime and Ritacco, Viviana and Mercedes Zambrano, María}, + month = nov, + year = {2007}, + keywords = {DNA repair enzymes, Multi-drug resistant tuberculosis, Single nucleotide polymorphism}, + pages = {502--508}, + file = {ScienceDirect Snapshot:/home/acs98/Zotero/storage/LC3WBVIN/S1472979207000637.html:text/html}, +} + +@article{garcia_differential_2009, + title = {Differential gene expression in {White} {Spot} {Syndrome} {Virus} ({WSSV})-infected naïve and previously challenged {Pacific} white shrimp {Penaeus} ({Litopenaeus}) vannamei}, + volume = {289}, + issn = {0044-8486}, + url = {https://www.sciencedirect.com/science/article/pii/S004484860900060X}, + doi = {10.1016/j.aquaculture.2009.01.020}, + abstract = {White Spot Syndrome Virus (WSSV) is the most devastating viral disease affecting cultivated shrimp around the world. The CENIACUA breeding programme included host resistance as strategy to control WSSV. Since 1999, all families were subjected to WSSV challenge tests and up to 5\% of the animals survived. We suspect that a unique genetic profile could be responsible for survival. By Subtractive Suppression Hybridization improved with Mirror Orientation Selection we compared gene expression in haemocytes of WSSV-infected shrimp; seven were previously challenged (pre-challenged) and 10 naïve. Out of 1167 clones, 993 (85\%) were obtained from the WSSV-infected pre-challenged library, while 174 (15\%) were from the WSSV-infected naïve library. Differential expression was confirmed by hybridization using PCR DIG-labelled probes from unsubtracted cDNA. The 216 (18.5\%) clones differentially expressed in the WSSV-infected pre-challenged library and 23 (2\%) in the WSSV-infected naïve animals were sequenced. Relative expression of relevant gene products from both libraries was confirmed by reverse transcription real time PCR. Genes related to shrimp immune response, such as the antimicrobial peptide penaeidin, crustin, C-type lectin, protease inhibitor and chitin binding domain-containing protein were found in the library of pre-challenged shrimp. On the other hand, genes from the naïve library coded for viral structural and functional proteins. To our knowledge, this is the first report demonstrating that penaeidin-3 isoforms and crustin are over expressed in haemocytes of WSSV-infected pre-challenged P. vannamei.}, + number = {3}, + urldate = {2024-01-22}, + journal = {Aquaculture}, + author = {García, Juan C. and Reyes, Alejandro and Salazar, Marcela and Granja, Clarissa B.}, + month = apr, + year = {2009}, + keywords = {(), Differential gene expression, Haemocytes, Real time PCR, Suppression Subtractive Hybridization, White Spot Syndrome Virus}, + pages = {253--258}, + file = {ScienceDirect Snapshot:/home/acs98/Zotero/storage/SR4KKZQD/S004484860900060X.html:text/html}, +} + +@article{reyes_viruses_2010, + title = {Viruses in the faecal microbiota of monozygotic twins and their mothers}, + volume = {466}, + copyright = {2010 Springer Nature Limited}, + issn = {1476-4687}, + url = {https://www.nature.com/articles/nature09199}, + doi = {10.1038/nature09199}, + abstract = {Viral diversity and life cycles are poorly understood in the human gut and other body habitats. Phages and their encoded functions may provide informative signatures of a human microbiota and of microbial community responses to various disturbances, and may indicate whether community health or dysfunction is manifest after apparent recovery from a disease or therapeutic intervention. Here we report sequencing of the viromes (metagenomes) of virus-like particles isolated from faecal samples collected from healthy adult female monozygotic twins and their mothers at three time points over a one-year period. We compared these data sets with data sets of sequenced bacterial 16S ribosomal RNA genes and total-faecal-community DNA. Co-twins and their mothers share a significantly greater degree of similarity in their faecal bacterial communities than do unrelated individuals. In contrast, viromes are unique to individuals regardless of their degree of genetic relatedness. Despite remarkable interpersonal variations in viromes and their encoded functions, intrapersonal diversity is very low, with {\textgreater}95\% of virotypes retained over the period surveyed, and with viromes dominated by a few temperate phages that exhibit remarkable genetic stability. These results indicate that a predatory viral–microbial dynamic, manifest in a number of other characterized environmental ecosystems, is notably absent in the very distal intestine.}, + language = {en}, + number = {7304}, + urldate = {2024-01-22}, + journal = {Nature}, + author = {Reyes, Alejandro and Haynes, Matthew and Hanson, Nicole and Angly, Florent E. and Heath, Andrew C. and Rohwer, Forest and Gordon, Jeffrey I.}, + month = jul, + year = {2010}, + note = {Number: 7304 +Publisher: Nature Publishing Group}, + keywords = {Microbiota, Genomics, Virology}, + pages = {334--338}, + file = {Full Text PDF:/home/acs98/Zotero/storage/KMVPUV9I/Reyes et al. - 2010 - Viruses in the faecal microbiota of monozygotic tw.pdf:application/pdf}, +} + +@article{goodman_extensive_2011, + title = {Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice}, + volume = {108}, + url = {https://www.pnas.org/doi/abs/10.1073/pnas.1102938108}, + doi = {10.1073/pnas.1102938108}, + abstract = {The proportion of the human gut bacterial community that is recalcitrant to culture remains poorly defined. In this report, we combine high-throughput anaerobic culturing techniques with gnotobiotic animal husbandry and metagenomics to show that the human fecal microbiota consists largely of taxa and predicted functions that are represented in its readily cultured members. When transplanted into gnotobiotic mice, complete and cultured communities exhibit similar colonization dynamics, biogeographical distribution, and responses to dietary perturbations. Moreover, gnotobiotic mice can be used to shape these personalized culture collections to enrich for taxa suited to specific diets. We also demonstrate that thousands of isolates from a single donor can be clonally archived and taxonomically mapped in multiwell format to create personalized microbiota collections. Retrieving components of a microbiota that have coexisted in single donors who have physiologic or disease phenotypes of interest and reuniting them in various combinations in gnotobiotic mice should facilitate preclinical studies designed to determine the degree to which tractable bacterial taxa are able to transmit donor traits or influence host biology.}, + number = {15}, + urldate = {2024-01-22}, + journal = {Proceedings of the National Academy of Sciences}, + author = {Goodman, Andrew L. and Kallstrom, George and Faith, Jeremiah J. and Reyes, Alejandro and Moore, Aimee and Dantas, Gautam and Gordon, Jeffrey I.}, + month = apr, + year = {2011}, + note = {Publisher: Proceedings of the National Academy of Sciences}, + pages = {6252--6257}, + file = {Full Text PDF:/home/acs98/Zotero/storage/YFGALRTD/Goodman et al. - 2011 - Extensive personal human gut microbiota culture co.pdf:application/pdf}, +} + +@incollection{cardona_genomic_2012, + title = {Genomic {Variability} of {Mycobacterium} tuberculosis}, + isbn = {978-953-307-946-2}, + url = {http://www.intechopen.com/books/understanding-tuberculosis-deciphering-the-secret-life-of-the-bacilli/genomic-variability-of-mycobacterium-tuberculosis}, + language = {en}, + urldate = {2024-01-22}, + booktitle = {Understanding {Tuberculosis} - {Deciphering} the {Secret} {Life} of the {Bacilli}}, + publisher = {InTech}, + author = {Mercedes, Mara and Hernndez-Neuta, Ginna and Hernndez-Neuta, Ivn and Sandoval, Andrea and Cubillos-Ruiz, Andrs and Reyes, Alejandro and Del, Patricia}, + editor = {Cardona, Pere-Joan}, + month = feb, + year = {2012}, + doi = {10.5772/31276}, + file = {Mercedes et al. - 2012 - Genomic Variability of Mycobacterium tuberculosis.pdf:/home/acs98/Zotero/storage/IA5YP653/Mercedes et al. - 2012 - Genomic Variability of Mycobacterium tuberculosis.pdf:application/pdf}, +} + +@article{kim_noncomplementation_2012, + title = {A {Noncomplementation} {Screen} for {Quantitative} {Trait} {Alleles} in {Saccharomyces} cerevisiae}, + volume = {2}, + issn = {2160-1836}, + url = {https://doi.org/10.1534/g3.112.002550}, + doi = {10.1534/g3.112.002550}, + abstract = {Both linkage and linkage disequilibrium mapping provide well-defined approaches to mapping quantitative trait alleles. However, alleles of small effect are particularly difficult to refine to individual genes and causative mutations. Quantitative noncomplementation provides a means of directly testing individual genes for quantitative trait alleles in a fixed genetic background. Here, we implement a genome-wide noncomplementation screen for quantitative trait alleles that affect colony color or size by using the yeast deletion collection. As proof of principle, we find a previously known allele of CYS4 that affects colony color and a novel allele of CTT1 that affects resistance to hydrogen peroxide. To screen nearly 4700 genes in nine diverse yeast strains, we developed a high-throughput robotic plating assay to quantify colony color and size. Although we found hundreds of candidate alleles, reciprocal hemizygosity analysis of a select subset revealed that many of the candidates were false positives, in part the result of background-dependent haploinsufficiency or second-site mutations within the yeast deletion collection. Our results highlight the difficulty of identifying small-effect alleles but support the use of noncomplementation as a rapid means of identifying quantitative trait alleles of large effect.}, + number = {7}, + urldate = {2024-01-22}, + journal = {G3 Genes{\textbar}Genomes{\textbar}Genetics}, + author = {Kim, Hyun Seok and Huh, Juyoung and Riles, Linda and Reyes, Alejandro and Fay, Justin C}, + month = jul, + year = {2012}, + pages = {753--760}, + file = {Full Text PDF:/home/acs98/Zotero/storage/FYNALXRT/Kim et al. - 2012 - A Noncomplementation Screen for Quantitative Trait.pdf:application/pdf}, +} + +@article{forsberg_shared_2012, + title = {The {Shared} {Antibiotic} {Resistome} of {Soil} {Bacteria} and {Human} {Pathogens}}, + volume = {337}, + url = {https://www.science.org/doi/full/10.1126/science.1220761}, + doi = {10.1126/science.1220761}, + abstract = {Soil microbiota represent one of the ancient evolutionary origins of antibiotic resistance and have been proposed as a reservoir of resistance genes available for exchange with clinical pathogens. Using a high-throughput functional metagenomic approach in conjunction with a pipeline for the de novo assembly of short-read sequence data from functional selections (termed PARFuMS), we provide evidence for recent exchange of antibiotic resistance genes between environmental bacteria and clinical pathogens. We describe multidrug-resistant soil bacteria containing resistance cassettes against five classes of antibiotics (β-lactams, aminoglycosides, amphenicols, sulfonamides, and tetracyclines) that have perfect nucleotide identity to genes from diverse human pathogens. This identity encompasses noncoding regions as well as multiple mobilization sequences, offering not only evidence of lateral exchange but also a mechanism by which antibiotic resistance disseminates.}, + number = {6098}, + urldate = {2024-01-22}, + journal = {Science}, + author = {Forsberg, Kevin J. and Reyes, Alejandro and Wang, Bin and Selleck, Elizabeth M. and Sommer, Morten O. A. and Dantas, Gautam}, + month = aug, + year = {2012}, + note = {Publisher: American Association for the Advancement of Science}, + pages = {1107--1111}, + file = {Full Text PDF:/home/acs98/Zotero/storage/V3SIEGSG/Forsberg et al. - 2012 - The Shared Antibiotic Resistome of Soil Bacteria a.pdf:application/pdf}, +} + +@article{reyes_going_2012, + title = {Going viral: next-generation sequencing applied to phage populations in the human gut}, + volume = {10}, + copyright = {2012 Springer Nature Limited}, + issn = {1740-1534}, + shorttitle = {Going viral}, + url = {https://www.nature.com/articles/nrmicro2853}, + doi = {10.1038/nrmicro2853}, + abstract = {Methods for purifying virus-like particles (VLPs) from microbial communities, procedures for amplifying the small quantities of DNA that are recovered from VLPs, advances in next-generation sequencing, and a number of new computational approaches have laid the foundations for a 'new age of phage', in which rapid progress is being made in characterizing the viral diversity and virus–bacterial host dynamics in the microbial communities residing in a broad range of habitats, including those associated with our human bodies.Phage genomes have limited sequence conservation, making comparative genomics difficult. There is no conserved phylogenetic marker. Despite these obstacles, new techniques have been developed to classify phages.The phage community in the human gut is complex but appears to be much more stable than those in other habitats, such as the ocean. Patterns of temporal and functional variation are being defined using metagenomics. Gnotobiotic animal models hold promise for further characterization of the role of phages in shaping the properties of the human gut microbiota, including its responses to various perturbations.New insights about the microbial ecology in humans have been gleaned from comparative metagenomics studies and have rekindled an interest in phage therapy. Therapeutic goals may include enhancing the ability of probiotic consortia to establish themselves, and the addition of novel functions to the gut microbiome. Representative preclinical models are needed for proof-of-principle, proof-of-efficacy, dosing and safety tests.}, + language = {en}, + number = {9}, + urldate = {2024-01-22}, + journal = {Nature Reviews Microbiology}, + author = {Reyes, Alejandro and Semenkovich, Nicholas P. and Whiteson, Katrine and Rohwer, Forest and Gordon, Jeffrey I.}, + month = sep, + year = {2012}, + note = {Number: 9 +Publisher: Nature Publishing Group}, + keywords = {Microbiota, Metagenomics, Phage biology, Next-generation sequencing}, + pages = {607--617}, + file = {Accepted Version:/home/acs98/Zotero/storage/5YAEM3HC/Reyes et al. - 2012 - Going viral next-generation sequencing applied to.pdf:application/pdf}, +} + +@article{siebrasse_identification_2012, + title = {Identification of {MW} {Polyomavirus}, a {Novel} {Polyomavirus} in {Human} {Stool}}, + volume = {86}, + url = {https://journals.asm.org/doi/full/10.1128/jvi.01210-12}, + doi = {10.1128/jvi.01210-12}, + abstract = {We have discovered a novel polyomavirus present in multiple human stool samples. The virus was initially identified by shotgun pyrosequencing of DNA purified from virus-like particles isolated from a stool sample collected from a healthy child from Malawi. We subsequently sequenced the virus' 4,927-bp genome, which has been provisionally named MW polyomavirus (MWPyV). The virus has genomic features characteristic of the family Polyomaviridae but is highly divergent from other members of this family. It is predicted to encode the large T antigen and small T antigen early proteins and the VP1, VP2, and VP3 structural proteins. A real-time PCR assay was designed and used to screen 514 stool samples from children with diarrhea in St. Louis, MO; 12 specimens were positive for MWPyV. Comparison of the whole-genome sequences of the index Malawi case and one St. Louis case demonstrated that the two strains of MWPyV varied by 5.3\% at the nucleotide level. The number of polyomaviruses found in the human body continues to grow, raising the question of how many more species have yet to be identified and what roles they play in humans with and without manifest disease.}, + number = {19}, + urldate = {2024-01-22}, + journal = {Journal of Virology}, + author = {Siebrasse, Erica A. and Reyes, Alejandro and Lim, Efrem S. and Zhao, Guoyan and Mkakosya, Rajhab S. and Manary, Mark J. and Gordon, Jeffrey I. and Wang, David}, + month = oct, + year = {2012}, + note = {Publisher: American Society for Microbiology}, + pages = {10321--10326}, + file = {Full Text PDF:/home/acs98/Zotero/storage/NIXF6EZ8/Siebrasse et al. - 2012 - Identification of MW Polyomavirus, a Novel Polyoma.pdf:application/pdf}, +} + +@article{reyes_is-seq_2012, + title = {{IS}-seq: a novel high throughput survey of in vivo {IS6110} transposition in multiple {Mycobacterium} tuberculosis genomes}, + volume = {13}, + issn = {1471-2164}, + shorttitle = {{IS}-seq}, + url = {https://doi.org/10.1186/1471-2164-13-249}, + doi = {10.1186/1471-2164-13-249}, + abstract = {The insertion element IS6110 is one of the main sources of genomic variability in Mycobacterium tuberculosis, the etiological agent of human tuberculosis. Although IS 6110 has been used extensively as an epidemiological marker, the identification of the precise chromosomal insertion sites has been limited by technical challenges. Here, we present IS-seq, a novel method that combines high-throughput sequencing using Illumina technology with efficient combinatorial sample multiplexing to simultaneously probe 519 clinical isolates, identifying almost all the flanking regions of the element in a single experiment.}, + number = {1}, + urldate = {2024-01-22}, + journal = {BMC Genomics}, + author = {Reyes, Alejandro and Sandoval, Andrea and Cubillos-Ruiz, Andrés and Varley, Katherine E. and Hernández-Neuta, Ivan and Samper, Sofía and Martín, Carlos and García, María Jesús and Ritacco, Viviana and López, Lucelly and Robledo, Jaime and Zambrano, María Mercedes and Mitra, Robi D. and Del Portillo, Patricia}, + month = jun, + year = {2012}, + keywords = {Tuberculosis, Conditional Mutual Information, Insertion Site, IS6110 Element, Restriction Fragment Length Polymorphism}, + pages = {249}, + file = {Full Text PDF:/home/acs98/Zotero/storage/DWQYGM75/Reyes et al. - 2012 - IS-seq a novel high throughput survey of in vivo .pdf:application/pdf;Snapshot:/home/acs98/Zotero/storage/3NM54ZSU/1471-2164-13-249.html:text/html}, +} + +@article{lim_discovery_2013, + title = {Discovery of {STL} polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique {T} antigen by alternative splicing}, + volume = {436}, + issn = {0042-6822}, + url = {https://www.sciencedirect.com/science/article/pii/S0042682212005971}, + doi = {10.1016/j.virol.2012.12.005}, + abstract = {The family Polyomaviridae is comprised of circular double-stranded DNA viruses, several of which are associated with diseases, including cancer, in immunocompromised patients. Here we describe a novel polyomavirus recovered from the fecal microbiota of a child in Malawi, provisionally named STL polyomavirus (STLPyV). We detected STLPyV in clinical stool specimens from USA and The Gambia at up to 1\% frequency. Complete genome comparisons of two STLPyV strains demonstrated 5.2\% nucleotide divergence. Alternative splicing of the STLPyV early region yielded a unique form of T antigen, which we named 229T, in addition to the expected large and small T antigens. STLPyV has a mosaic genome and shares an ancestral recombinant origin with MWPyV. The discovery of STLPyV highlights a novel alternative splicing strategy and advances our understanding of the complex evolutionary history of polyomaviruses.}, + number = {2}, + urldate = {2024-01-22}, + journal = {Virology}, + author = {Lim, Efrem S. and Reyes, Alejandro and Antonio, Martin and Saha, Debasish and Ikumapayi, Usman N. and Adeyemi, Mitchell and Stine, O. Colin and Skelton, Rebecca and Brennan, Daniel C. and Mkakosya, Rajhab S. and Manary, Mark J. and Gordon, Jeffrey I. and Wang, David}, + month = feb, + year = {2013}, + keywords = {Recombination, Alternative splicing, Polyomavirus, Tumor antigen, Virus discovery}, + pages = {295--303}, + file = {Accepted Version:/home/acs98/Zotero/storage/WDSLSNW6/Lim et al. - 2013 - Discovery of STL polyomavirus, a polyomavirus of a.pdf:application/pdf}, +} + +@article{reyes_gnotobiotic_2013, + title = {Gnotobiotic mouse model of phage–bacterial host dynamics in the human gut}, + volume = {110}, + url = {https://www.pnas.org/doi/abs/10.1073/pnas.1319470110}, + doi = {10.1073/pnas.1319470110}, + abstract = {Bacterial viruses (phages) are the most abundant biological group on Earth and are more genetically diverse than their bacterial prey/hosts. To characterize their role as agents shaping gut microbial community structure, adult germ-free mice were colonized with a consortium of 15 sequenced human bacterial symbionts, 13 of which harbored one or more predicted prophages. One member, Bacteroides cellulosilyticus WH2, was represented by a library of isogenic transposon mutants that covered 90\% of its genes. Once assembled, the community was subjected to a staged phage attack with a pool of live or heat-killed virus-like particles (VLPs) purified from the fecal microbiota of five healthy humans. Shotgun sequencing of DNA from the input pooled VLP preparation plus shotgun sequencing of gut microbiota samples and purified fecal VLPs from the gnotobiotic mice revealed a reproducible nonsimultaneous pattern of attack extending over a 25-d period that involved five phages, none described previously. This system allowed us to (i) correlate increases in specific phages present in the pooled VLPs with reductions in the representation of particular bacterial taxa, (ii) provide evidence that phage resistance occurred because of ecological or epigenetic factors, (iii) track the origin of each of the five phages among the five human donors plus the extent of their genome variation between and within recipient mice, and (iv) establish the dramatic in vivo fitness advantage that a locus within a B. cellulosilyticus prophage confers upon its host. Together, these results provide a defined community-wide view of phage–bacterial host dynamics in the gut.}, + number = {50}, + urldate = {2024-01-22}, + journal = {Proceedings of the National Academy of Sciences}, + author = {Reyes, Alejandro and Wu, Meng and McNulty, Nathan P. and Rohwer, Forest L. and Gordon, Jeffrey I.}, + month = dec, + year = {2013}, + note = {Publisher: Proceedings of the National Academy of Sciences}, + pages = {20236--20241}, + file = {Full Text PDF:/home/acs98/Zotero/storage/8GBZP35C/Reyes et al. - 2013 - Gnotobiotic mouse model of phage–bacterial host dy.pdf:application/pdf}, +} + +@article{seedorf_bacteria_2014, + title = {Bacteria from {Diverse} {Habitats} {Colonize} and {Compete} in the {Mouse} {Gut}}, + volume = {159}, + issn = {0092-8674, 1097-4172}, + url = {https://www.cell.com/cell/abstract/S0092-8674(14)01156-8}, + doi = {10.1016/j.cell.2014.09.008}, + abstract = {To study how microbes establish themselves in a mammalian gut environment, we colonized germ-free mice with microbial communities from human, zebrafish, and termite guts, human skin and tongue, soil, and estuarine microbial mats. Bacteria from these foreign environments colonized and persisted in the mouse gut; their capacity to metabolize dietary and host carbohydrates and bile acids correlated with colonization success. Cohousing mice harboring these xenomicrobiota or a mouse cecal microbiota, along with germ-free “bystanders,” revealed the success of particular bacterial taxa in invading guts with established communities and empty gut habitats. Unanticipated patterns of ecological succession were observed; for example, a soil-derived bacterium dominated even in the presence of bacteria from other gut communities (zebrafish and termite), and human-derived bacteria colonized germ-free bystander mice before mouse-derived organisms. This approach can be generalized to address a variety of mechanistic questions about succession, including succession in the context of microbiota-directed therapeutics.}, + language = {English}, + number = {2}, + urldate = {2024-01-22}, + journal = {Cell}, + author = {Seedorf, Henning and Griffin, Nicholas W. and Ridaura, Vanessa K. and Reyes, Alejandro and Cheng, Jiye and Rey, Federico E. and Smith, Michelle I. and Simon, Gabriel M. and Scheffrahn, Rudolf H. and Woebken, Dagmar and Spormann, Alfred M. and Van Treuren, William and Ursell, Luke K. and Pirrung, Megan and Robbins-Pianka, Adam and Cantarel, Brandi L. and Lombard, Vincent and Henrissat, Bernard and Knight, Rob and Gordon, Jeffrey I.}, + month = oct, + year = {2014}, + pmid = {25284151}, + note = {Publisher: Elsevier}, + pages = {253--266}, + file = {Full Text PDF:/home/acs98/Zotero/storage/QULNUUHT/Seedorf et al. - 2014 - Bacteria from Diverse Habitats Colonize and Compet.pdf:application/pdf}, +} + +@article{dorsett_hcodes_2014, + title = {{HCoDES} {Reveals} {Chromosomal} {DNA} {End} {Structures} with {Single}-{Nucleotide} {Resolution}}, + volume = {56}, + issn = {1097-2765}, + url = {https://www.cell.com/molecular-cell/abstract/S1097-2765(14)00834-X}, + doi = {10.1016/j.molcel.2014.10.024}, + abstract = {The structure of broken DNA ends is a critical determinant of the pathway used for DNA double-strand break (DSB) repair. Here, we develop an approach involving the hairpin capture of DNA end structures (HCoDES), which elucidates chromosomal DNA end structures at single-nucleotide resolution. HCoDES defines structures of physiologic DSBs generated by the RAG endonuclease, as well as those generated by nucleases widely used for genome editing. Analysis of G1 phase cells deficient in H2AX or 53BP1 reveals DNA ends that are frequently resected to form long single-stranded overhangs that can be repaired by mutagenic pathways. In addition to 3′ overhangs, many of these DNA ends unexpectedly form long 5′ single-stranded overhangs. The divergence in DNA end structures resolved by HCoDES suggests that H2AX and 53BP1 may have distinct activities in end protection. Thus, the high-resolution end structures obtained by HCoDES identify features of DNA end processing during DSB repair.}, + language = {English}, + number = {6}, + urldate = {2024-01-22}, + journal = {Molecular Cell}, + author = {Dorsett, Yair and Zhou, Yanjiao and Tubbs, Anthony T. and Chen, Bo-Ruei and Purman, Caitlin and Lee, Baeck-Seung and George, Rosmy and Bredemeyer, Andrea L. and Zhao, Jiang-yang and Sodergen, Erica and Weinstock, George M. and Han, Nathan D. and Reyes, Alejandro and Oltz, Eugene M. and Dorsett, Dale and Misulovin, Ziva and Payton, Jacqueline E. and Sleckman, Barry P.}, + month = dec, + year = {2014}, + pmid = {25435138}, + note = {Publisher: Elsevier}, + pages = {808--818}, + file = {Full Text PDF:/home/acs98/Zotero/storage/A68G2Z6L/Dorsett et al. - 2014 - HCoDES Reveals Chromosomal DNA End Structures with.pdf:application/pdf}, +} + +@article{reyes_gut_2015, + title = {Gut {DNA} viromes of {Malawian} twins discordant for severe acute malnutrition}, + volume = {112}, + url = {https://www.pnas.org/doi/abs/10.1073/pnas.1514285112}, + doi = {10.1073/pnas.1514285112}, + abstract = {The bacterial component of the human gut microbiota undergoes a definable program of postnatal development. Evidence is accumulating that this program is disrupted in children with severe acute malnutrition (SAM) and that their persistent gut microbiota immaturity, which is not durably repaired with current ready-to-use therapeutic food (RUTF) interventions, is causally related to disease pathogenesis. To further characterize gut microbial community development in healthy versus malnourished infants/children, we performed a time-series metagenomic study of DNA isolated from virus-like particles (VLPs) recovered from fecal samples collected during the first 30 mo of postnatal life from eight pairs of mono- and dizygotic Malawian twins concordant for healthy growth and 12 twin pairs discordant for SAM. Both members of discordant pairs were sampled just before, during, and after treatment with a peanut-based RUTF. Using Random Forests and a dataset of 17,676 viral contigs assembled from shotgun sequencing reads of VLP DNAs, we identified viruses that distinguish different stages in the assembly of the gut microbiota in the concordant healthy twin pairs. This developmental program is impaired in both members of SAM discordant pairs and not repaired with RUTF. Phage plus members of the Anelloviridae and Circoviridae families of eukaryotic viruses discriminate discordant from concordant healthy pairs. These results disclose that apparently healthy cotwins in discordant pairs have viromes associated with, although not necessarily mediators, of SAM; as such, they provide a human model for delineating normal versus perturbed postnatal acquisition and retention of the gut microbiota’s viral component in populations at risk for malnutrition.}, + number = {38}, + urldate = {2024-01-22}, + journal = {Proceedings of the National Academy of Sciences}, + author = {Reyes, Alejandro and Blanton, Laura V. and Cao, Song and Zhao, Guoyan and Manary, Mark and Trehan, Indi and Smith, Michelle I. and Wang, David and Virgin, Herbert W. and Rohwer, Forest and Gordon, Jeffrey I.}, + month = sep, + year = {2015}, + note = {Publisher: Proceedings of the National Academy of Sciences}, + pages = {11941--11946}, + file = {Full Text PDF:/home/acs98/Zotero/storage/69IKTRND/Reyes et al. - 2015 - Gut DNA viromes of Malawian twins discordant for s.pdf:application/pdf}, +} + +@article{reyes_use_2017, + title = {Use of profile hidden {Markov} models in viral discovery: current insights}, + volume = {7}, + issn = {null}, + shorttitle = {Use of profile hidden {Markov} models in viral discovery}, + url = {https://www.tandfonline.com/doi/abs/10.2147/AGG.S136574}, + doi = {10.2147/AGG.S136574}, + abstract = {Sequence similarity searches are the bioinformatic cornerstone of molecular sequence analysis for all domains of life. However, large amounts of divergence between organisms, such as those seen among viruses, can significantly hamper analyses. Profile hidden Markov models (profile HMMs) are among the most successful approaches for dealing with this problem, which represent an invaluable tool for viral identification efforts. Profile HMMs are statistical models that convert information from a multiple sequence alignment into a set of probability values that reflect position-specific variation levels in all members of evolutionarily related sequences. Since profile HMMs represent a wide spectrum of variation, these models show higher sensitivity than conventional similarity methods such as BLAST for the detection of remote homologs. In recent years, there has been an effort to compile viral sequences from different viral taxonomic groups into integrated databases, such as Prokaryotic Virus Orthlogous Groups (pVOGs) and database of profile HMMs (vFam) database, which provide functional annotation, multiple sequence alignments, and profile HMMs. Since these databases rely on viral sequences collected from GenBank and RefSeq, they suffer in variable extent from uneven taxonomic sampling, with low sequence representation of many viral groups, which affects the efficacy of the models. One of the interesting applications of viral profile HMMs is the detection and sequence reconstruction of specific viral genomes from metagenomic data. In fact, several DNA assembly programs that use profile HMMs as seeds have been developed to identify and build gene-sized assemblies or viral genome sequences of unrestrained length, using conventional and progressive assembly approaches, respectively. In this review, we address these aspects and cover some up-to-date information on viral genomics that should be considered in the choice of molecular markers for viral discovery. Finally, we propose a roadmap for rational development of viral profile HMMs and discuss the main challenges associated with this task.}, + urldate = {2024-01-22}, + journal = {Advances in Genomics and Genetics}, + author = {Reyes, Alejandro and Marcelo P Alves, João and Durham, Alan Mitchell and Gruber, Arthur}, + month = jul, + year = {2017}, + note = {Publisher: Dove Medical Press +\_eprint: https://www.tandfonline.com/doi/pdf/10.2147/AGG.S136574}, + keywords = {profile hidden Markov models, de novo diagnosis, DNA assembly, metagenomic analysis, molecular markers, viral discovery}, + pages = {29--45}, + file = {Full Text PDF:/home/acs98/Zotero/storage/QT5D8C73/Reyes et al. - 2017 - Use of profile hidden Markov models in viral disco.pdf:application/pdf}, +} + +@article{buitrago_florez_changing_2017, + title = {Changing a {Generation}’s {Way} of {Thinking}: {Teaching} {Computational} {Thinking} {Through} {Programming}}, + volume = {87}, + issn = {0034-6543}, + shorttitle = {Changing a {Generation}’s {Way} of {Thinking}}, + url = {https://doi.org/10.3102/0034654317710096}, + doi = {10.3102/0034654317710096}, + abstract = {Computational thinking (CT) uses concepts that are essential to computing and information science to solve problems, design and evaluate complex systems, and understand human reasoning and behavior. This way of thinking has important implications in computer sciences as well as in almost every other field. Therefore, we contend that CT should be taught in elementary schools and included in every university’s educational curriculum. Several studies that measure the impact of teaching programming, analytical thinking, and CT have been conducted. In this review, we analyze and discuss findings from these studies and highlight the importance of learning programming with a focus on the development of CT skills at a young age. We also describe the tools that are available to improve the teaching of CT and provide a state-of-the-art overview of how programming is being taught at schools and universities in Colombia and around the world.}, + language = {en}, + number = {4}, + urldate = {2024-01-22}, + journal = {Review of Educational Research}, + author = {Buitrago Flórez, Francisco and Casallas, Rubby and Hernández, Marcela and Reyes, Alejandro and Restrepo, Silvia and Danies, Giovanna}, + month = aug, + year = {2017}, + note = {Publisher: American Educational Research Association}, + pages = {834--860}, +} + +@incollection{castro-mejia_extraction_2018, + address = {New York, NY}, + series = {Methods in {Molecular} {Biology}}, + title = {Extraction and {Purification} of {Viruses} from {Fecal} {Samples} for {Metagenome} and {Morphology} {Analyses}}, + isbn = {978-1-4939-8682-8}, + url = {https://doi.org/10.1007/978-1-4939-8682-8_5}, + abstract = {The human enteric virome consists of endogenous retro elements and viruses that infect the host and members of the gut microbiome (GM). Mounting evidence suggests that the gut virome plays a central role in maintaining homeostasis and via the GM influences immunology of the host. To thoroughly characterize the gut virome, it is often very useful to first separate and concentrate extracellular viral-like particles (eVLPs) enabling an integrative characterization of them. Here, we describe a detailed protocol for extraction and concentration of the viral fraction from fecal samples based on a polyethylene glycol precipitation (PEG) approach. These procedures maximize the yields of eVLPs (and their DNA) with high purity well suited for down-stream analysis such as quantification and morphological assessment, determination of phage-host pairs as well as virome sequencing.}, + language = {en}, + urldate = {2024-01-22}, + booktitle = {The {Human} {Virome}: {Methods} and {Protocols}}, + publisher = {Springer}, + author = {Castro-Mejía, Josué L. and Deng, Ling and Vogensen, Finn K. and Reyes, Alejandro and Nielsen, Dennis S.}, + editor = {Moya, Andrés and Pérez Brocal, Vicente}, + year = {2018}, + doi = {10.1007/978-1-4939-8682-8_5}, + keywords = {Extraction procedures, Gut-virome, Metagenome of extracellular viral-like particles (eVLPs), Morphology, Polyethylene-glycol (PEG) precipitation}, + pages = {49--57}, +} + +@article{restrepo_draft_2018, + title = {Draft {Genome} {Sequence} of a {White} {Spot} {Syndrome} {Virus} {Isolate} {Obtained} in {Ecuador}}, + volume = {6}, + url = {https://journals.asm.org/doi/full/10.1128/genomea.00605-18}, + doi = {10.1128/genomea.00605-18}, + abstract = {White spot syndrome virus (WSSV) is the most devastating viral disease affecting cultivated shrimp around the world. Currently, there is no reported genetic information on WSSV affecting Penaeus vannamei in Ecuador. Therefore, we determined the genome of a WSSV isolate from shrimp and compared it with the genomes of isolates from other geographical locations.}, + number = {26}, + urldate = {2024-01-22}, + journal = {Genome Announcements}, + author = {Restrepo, Leda and Reyes, Alejandro and Bajaña, Leandro and Betancourt, Irma and Bayot, Bonny}, + month = jun, + year = {2018}, + note = {Publisher: American Society for Microbiology}, + pages = {10.1128/genomea.00605--18}, + file = {Full Text PDF:/home/acs98/Zotero/storage/4QL66VIS/Restrepo et al. - 2018 - Draft Genome Sequence of a White Spot Syndrome Vir.pdf:application/pdf}, +} + +@article{restrepo_pirvp_2018, + title = {{PirVP} genes causing {AHPND} identified in a new {Vibrio} species ({Vibrio} punensis) within the commensal {Orientalis} clade}, + volume = {8}, + copyright = {2018 The Author(s)}, + issn = {2045-2322}, + url = {https://www.nature.com/articles/s41598-018-30903-x}, + doi = {10.1038/s41598-018-30903-x}, + abstract = {Acute hepatopancreatic necrosis disease (AHPND) has extended rapidly, causing alarming shrimp mortalities. Initially, the only known causative agent was Vibrio parahaemolyticus carrying a plasmid coding for the mortal toxins PirVP. Recently, it has been found that the plasmid and hence the disease, could be transferred among members of the Harveyi clade. The current study performs a genomic characterization of an isolate capable of developing AHPND in shrimp. Mortality studies and molecular and histopathological analyses showed the infection capacity of the strain. Multilocus sequence analysis placed the bacteria as a member of the Orientalis clade, well known for containing commensal and even probiotic bacteria used in the shrimp industry. Further whole genome comparative analyses, including Vibrio species from the Orientalis clade, and phylogenomic metrics (TETRA, ANI and DDH) showed that the isolate belongs to a previously unidentified species, now named Vibrio punensis sp. nov. strain BA55. Our findings show that the gene transfer capacity of Vibrio species goes beyond the clade classification, demonstrating a new pathogenic capacity to a previously known commensal clade. The presence of these genes in a different Vibrio clade may contribute to the knowledge of the Vibrio pathogenesis and has major implications for the spread of emerging diseases.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Scientific Reports}, + author = {Restrepo, Leda and Bayot, Bonny and Arciniegas, Sebastián and Bajaña, Leandro and Betancourt, Irma and Panchana, Fanny and Reyes Muñoz, Alejandro}, + month = aug, + year = {2018}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Pathogens, Comparative genomics, Molecular evolution}, + pages = {13080}, + file = {Full Text PDF:/home/acs98/Zotero/storage/59V4QK44/Restrepo et al. - 2018 - PirVP genes causing AHPND identified in a new Vibr.pdf:application/pdf}, +} + +@article{quintanilla_local_2018, + title = {Local confinement of disease-related microbiome facilitates recovery of gorgonian sea fans from necrotic-patch disease}, + volume = {8}, + copyright = {2018 The Author(s)}, + issn = {2045-2322}, + url = {https://www.nature.com/articles/s41598-018-33007-8}, + doi = {10.1038/s41598-018-33007-8}, + abstract = {Microbiome disruptions triggering disease outbreaks are increasingly threatening corals worldwide. In the Tropical Eastern Pacific, a necrotic-patch disease affecting gorgonian corals (sea fans, Pacifigorgia spp.) has been observed in recent years. However, the composition of the microbiome and its disease-related disruptions remain unknown in these gorgonian corals. Therefore, we analysed 16S rRNA gene amplicons from tissues of healthy colonies (n = 19) and from symptomatic-asymptomatic tissues of diseased colonies (n = 19) of Pacifigorgia cairnsi (Gorgoniidae: Octocorallia) in order to test for disease-related changes in the bacterial microbiome. We found that potential endosymbionts (mostly Endozoicomonas spp.) dominate the core microbiome in healthy colonies. Moreover, healthy tissues differed in community composition and functional profile from those of the symptomatic tissues but did not show differences to asymptomatic tissues of the diseased colonies. A more diverse set of bacteria was observed in symptomatic tissues, together with the decline in abundance of the potential endosymbionts from the healthy core microbiome. Furthermore, according to a comparative taxonomy-based functional profiling, these symptomatic tissues were characterized by the increase in heterotrophic, ammonia oxidizer and dehalogenating bacteria and by the depletion of nitrite and sulphate reducers. Overall, our results suggest that the bacterial microbiome associated with the disease behaves opportunistically and is likely in a state of microbial dysbiosis. We also conclude that the confinement of the disease-related consortium to symptomatic tissues may facilitate colony recovery.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Scientific Reports}, + author = {Quintanilla, Elena and Ramírez-Portilla, Catalina and Adu-Oppong, Boahemaa and Walljasper, Gretchen and Glaeser, Stefanie P. and Wilke, Thomas and Muñoz, Alejandro Reyes and Sánchez, Juan A.}, + month = oct, + year = {2018}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Microbiome, Symbiosis}, + pages = {14636}, + file = {Full Text PDF:/home/acs98/Zotero/storage/I54BIB2D/Quintanilla et al. - 2018 - Local confinement of disease-related microbiome fa.pdf:application/pdf}, +} + +@article{roux_minimum_2019, + title = {Minimum {Information} about an {Uncultivated} {Virus} {Genome} ({MIUViG})}, + volume = {37}, + copyright = {2018 The Author(s)}, + issn = {1546-1696}, + url = {https://www.nature.com/articles/nbt.4306}, + doi = {10.1038/nbt.4306}, + abstract = {We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Nature Biotechnology}, + author = {Roux, Simon and Adriaenssens, Evelien M. and Dutilh, Bas E. and Koonin, Eugene V. and Kropinski, Andrew M. and Krupovic, Mart and Kuhn, Jens H. and Lavigne, Rob and Brister, J. Rodney and Varsani, Arvind and Amid, Clara and Aziz, Ramy K. and Bordenstein, Seth R. and Bork, Peer and Breitbart, Mya and Cochrane, Guy R. and Daly, Rebecca A. and Desnues, Christelle and Duhaime, Melissa B. and Emerson, Joanne B. and Enault, François and Fuhrman, Jed A. and Hingamp, Pascal and Hugenholtz, Philip and Hurwitz, Bonnie L. and Ivanova, Natalia N. and Labonté, Jessica M. and Lee, Kyung-Bum and Malmstrom, Rex R. and Martinez-Garcia, Manuel and Mizrachi, Ilene Karsch and Ogata, Hiroyuki and Páez-Espino, David and Petit, Marie-Agnès and Putonti, Catherine and Rattei, Thomas and Reyes, Alejandro and Rodriguez-Valera, Francisco and Rosario, Karyna and Schriml, Lynn and Schulz, Frederik and Steward, Grieg F. and Sullivan, Matthew B. and Sunagawa, Shinichi and Suttle, Curtis A. and Temperton, Ben and Tringe, Susannah G. and Thurber, Rebecca Vega and Webster, Nicole S. and Whiteson, Katrine L. and Wilhelm, Steven W. and Wommack, K. Eric and Woyke, Tanja and Wrighton, Kelly C. and Yilmaz, Pelin and Yoshida, Takashi and Young, Mark J. and Yutin, Natalya and Allen, Lisa Zeigler and Kyrpides, Nikos C. and Eloe-Fadrosh, Emiley A.}, + month = jan, + year = {2019}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Environmental microbiology, Genetic databases, Metagenomics, Phage biology, Virology}, + pages = {29--37}, + file = {Full Text PDF:/home/acs98/Zotero/storage/4UJVAUKX/Roux et al. - 2019 - Minimum Information about an Uncultivated Virus Ge.pdf:application/pdf}, +} + +@article{amann_toward_2019, + title = {Toward unrestricted use of public genomic data}, + volume = {363}, + url = {https://www.science.org/doi/full/10.1126/science.aaw1280}, + doi = {10.1126/science.aaw1280}, + abstract = {Despite some notable progress in data sharing policies and practices, restrictions are still often placed on the open and unconditional use of various genomic data after they have received official approval for release to the public domain or to public databases. These restrictions, which often conflict with the terms and conditions of the funding bodies who supported the release of those data for the benefit of the scientific community and society, are perpetuated by the lack of clear guiding rules for data usage. Existing guidelines for data released to the public domain recognize but fail to resolve tensions between the importance of free and unconditional use of these data and the “right” of the data producers to the first publication. This self-contradiction has resulted in a loophole that allows different interpretations and a continuous debate between data producers and data users on the use of public data. We argue that the publicly available data should be treated as open data, a shared resource with unrestricted use for analysis, interpretation, and publication.}, + number = {6425}, + urldate = {2024-01-22}, + journal = {Science}, + author = {Amann, Rudolf I. and Baichoo, Shakuntala and Blencowe, Benjamin J. and Bork, Peer and Borodovsky, Mark and Brooksbank, Cath and Chain, Patrick S. G. and Colwell, Rita R. and Daffonchio, Daniele G. and Danchin, Antoine and de Lorenzo, Victor and Dorrestein, Pieter C. and Finn, Robert D. and Fraser, Claire M. and Gilbert, Jack A. and Hallam, Steven J. and Hugenholtz, Philip and Ioannidis, John P. A. and Jansson, Janet K. and Kim, Jihyun F. and Klenk, Hans-Peter and Klotz, Martin G. and Knight, Rob and Konstantinidis, Konstantinos T. and Kyrpides, Nikos C. and Mason, Christopher E. and McHardy, Alice C. and Meyer, Folker and Ouzounis, Christos A. and Patrinos, Aristides A. N. and Podar, Mircea and Pollard, Katherine S. and Ravel, Jacques and Muñoz, Alejandro Reyes and Roberts, Richard J. and Rosselló-Móra, Ramon and Sansone, Susanna-Assunta and Schloss, Patrick D. and Schriml, Lynn M. and Setubal, João C. and Sorek, Rotem and Stevens, Rick L. and Tiedje, James M. and Turjanski, Adrian and Tyson, Gene W. and Ussery, David W. and Weinstock, George M. and White, Owen and Whitman, William B. and Xenarios, Ioannis}, + month = jan, + year = {2019}, + note = {Publisher: American Association for the Advancement of Science}, + pages = {350--352}, + file = {Full Text PDF:/home/acs98/Zotero/storage/EY8U3C6G/Amann et al. - 2019 - Toward unrestricted use of public genomic data.pdf:application/pdf}, +} + +@article{moreno-gallego_virome_2019, + title = {Virome {Diversity} {Correlates} with {Intestinal} {Microbiome} {Diversity} in {Adult} {Monozygotic} {Twins}}, + volume = {25}, + issn = {1931-3128}, + url = {https://www.cell.com/cell-host-microbe/abstract/S1931-3128(19)30059-9}, + doi = {10.1016/j.chom.2019.01.019}, + abstract = {The virome is one of the most variable components of the human gut microbiome. Within twin pairs, viromes have been shown to be similar for infants, but not for adults, indicating that as twins age and their environments and microbiomes diverge, so do their viromes. The degree to which the microbiome drives the vast virome diversity is unclear. Here, we examine the relationship between microbiome and virome diversity in 21 adult monozygotic twin pairs selected for high or low microbiome concordance. Viromes derived from virus-like particles are unique to each individual, are dominated by Caudovirales and Microviridae, and exhibit a small core that includes crAssphage. Microbiome-discordant twins display more dissimilar viromes compared to microbiome-concordant twins, and the richer the microbiomes, the richer the viromes. These patterns are driven by bacteriophages, not eukaryotic viruses. Collectively, these observations support a strong role of the microbiome in patterning for the virome.}, + language = {English}, + number = {2}, + urldate = {2024-01-22}, + journal = {Cell Host \& Microbe}, + author = {Moreno-Gallego, J. Leonardo and Chou, Shao-Pei and Rienzi, Sara C. Di and Goodrich, Julia K. and Spector, Timothy D. and Bell, Jordana T. and Youngblut, Nicholas D. and Hewson, Ian and Reyes, Alejandro and Ley, Ruth E.}, + month = feb, + year = {2019}, + pmid = {30763537}, + note = {Publisher: Elsevier}, + keywords = {concordant and discordant monozygotic twins, human gut microbiome, human gut virome}, + pages = {261--272.e5}, + file = {Full Text PDF:/home/acs98/Zotero/storage/QBEXAPRH/Moreno-Gallego et al. - 2019 - Virome Diversity Correlates with Intestinal Microb.pdf:application/pdf}, +} + +@article{andrade-martinez_defining_2019, + title = {Defining a {Core} {Genome} for the {Herpesvirales} and {Exploring} their {Evolutionary} {Relationship} with the {Caudovirales}}, + volume = {9}, + copyright = {2019 The Author(s)}, + issn = {2045-2322}, + url = {https://www.nature.com/articles/s41598-019-47742-z}, + doi = {10.1038/s41598-019-47742-z}, + abstract = {The order Herpesvirales encompasses a wide variety of important and broadly distributed human pathogens. During the last decades, similarities in the viral cycle and the structure of some of their proteins with those of the order Caudovirales, the tailed bacterial viruses, have brought speculation regarding the existence of an evolutionary relationship between these clades. To evaluate such hypothesis, we used over 600 Herpesvirales and 2000 Caudovirales complete genomes to search for the presence or absence of clusters of orthologous protein domains and constructed a dendrogram based on their compositional similarities. The results obtained strongly suggest an evolutionary relationship between the two orders. Furthermore, they allowed to propose a core genome for the Herpesvirales, composed of 4 proteins, including the ATPase subunit of the DNA-packaging terminase, the only protein with previously verified conservation. Accordingly, a phylogenetic tree constructed with sequences derived from the clusters associated to these proteins grouped the Herpesvirales strains accordingly to the established families and subfamilies. Overall, this work provides results supporting the hypothesis that the two orders are evolutionarily related and contributes to the understanding of the history of the Herpesvirales.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Scientific Reports}, + author = {Andrade-Martínez, Juan S. and Moreno-Gallego, J. Leonardo and Reyes, Alejandro}, + month = aug, + year = {2019}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Phylogenetics, Classification and taxonomy, Viral evolution, Herpes virus, Phylogeny}, + pages = {11342}, + file = {Full Text PDF:/home/acs98/Zotero/storage/ADP2JC9U/Andrade-Martínez et al. - 2019 - Defining a Core Genome for the Herpesvirales and E.pdf:application/pdf}, +} + +@article{posada-perlaza_bogota_2019, + title = {Bogotá {River} anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes}, + volume = {9}, + copyright = {2019 The Author(s)}, + issn = {2045-2322}, + url = {https://www.nature.com/articles/s41598-019-48200-6}, + doi = {10.1038/s41598-019-48200-6}, + abstract = {The increase in antibiotic resistant bacteria has raised global concern regarding the future effectiveness of antibiotics. Human activities that influence microbial communities and environmental resistomes can generate additional risks to human health. In this work, we characterized aquatic microbial communities and their resistomes in samples collected at three sites along the Bogotá River and from wastewaters at three city hospitals, and investigated community profiles and antibiotic resistance genes (ARGs) as a function of anthropogenic contamination. The presence of antibiotics and other commonly used drugs increased in locations highly impacted by human activities, while the diverse microbial communities varied among sites and sampling times, separating upstream river samples from more contaminated hospital and river samples. Clinically relevant antibiotic resistant pathogens and ARGs were more abundant in contaminated water samples. Tracking of resistant determinants to upstream river waters and city sources suggested that human activities foster the spread of ARGs, some of which were co-localized with mobile genetic elements in assembled metagenomic contigs. Human contamination of this water ecosystem changed both community structure and environmental resistomes that can pose a risk to human health.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Scientific Reports}, + author = {Posada-Perlaza, Carlos Eduardo and Ramírez-Rojas, Adán and Porras, Paola and Adu-Oppong, Boahemaa and Botero-Coy, Ana-María and Hernández, Félix and Anzola, Juan M. and Díaz, Lorena and Dantas, Gautam and Reyes, Alejandro and Zambrano, María Mercedes}, + month = aug, + year = {2019}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Metagenomics, Antimicrobial resistance}, + pages = {11764}, + file = {Full Text PDF:/home/acs98/Zotero/storage/6MFSYR72/Posada-Perlaza et al. - 2019 - Bogotá River anthropogenic contamination alters mi.pdf:application/pdf}, +} + +@article{edwards_global_2019, + title = {Global phylogeography and ancient evolution of the widespread human gut virus {crAssphage}}, + volume = {4}, + copyright = {2019 The Author(s), under exclusive licence to Springer Nature Limited}, + issn = {2058-5276}, + url = {https://www.nature.com/articles/s41564-019-0494-6}, + doi = {10.1038/s41564-019-0494-6}, + abstract = {Microbiomes are vast communities of microorganisms and viruses that populate all natural ecosystems. Viruses have been considered to be the most variable component of microbiomes, as supported by virome surveys and examples of high genomic mosaicism. However, recent evidence suggests that the human gut virome is remarkably stable compared with that of other environments. Here, we investigate the origin, evolution and epidemiology of crAssphage, a widespread human gut virus. Through a global collaboration, we obtained DNA sequences of crAssphage from more than one-third of the world’s countries and showed that the phylogeography of crAssphage is locally clustered within countries, cities and individuals. We also found fully colinear crAssphage-like genomes in both Old-World and New-World primates, suggesting that the association of crAssphage with primates may be millions of years old. Finally, by exploiting a large cohort of more than 1,000 individuals, we tested whether crAssphage is associated with bacterial taxonomic groups of the gut microbiome, diverse human health parameters and a wide range of dietary factors. We identified strong correlations with different clades of bacteria that are related to Bacteroidetes and weak associations with several diet categories, but no significant association with health or disease. We conclude that crAssphage is a benign cosmopolitan virus that may have coevolved with the human lineage and is an integral part of the normal human gut virome.}, + language = {en}, + number = {10}, + urldate = {2024-01-22}, + journal = {Nature Microbiology}, + author = {Edwards, Robert A. and Vega, Alejandro A. and Norman, Holly M. and Ohaeri, Maria and Levi, Kyle and Dinsdale, Elizabeth A. and Cinek, Ondrej and Aziz, Ramy K. and McNair, Katelyn and Barr, Jeremy J. and Bibby, Kyle and Brouns, Stan J. J. and Cazares, Adrian and de Jonge, Patrick A. and Desnues, Christelle and Díaz Muñoz, Samuel L. and Fineran, Peter C. and Kurilshikov, Alexander and Lavigne, Rob and Mazankova, Karla and McCarthy, David T. and Nobrega, Franklin L. and Reyes Muñoz, Alejandro and Tapia, German and Trefault, Nicole and Tyakht, Alexander V. and Vinuesa, Pablo and Wagemans, Jeroen and Zhernakova, Alexandra and Aarestrup, Frank M. and Ahmadov, Gunduz and Alassaf, Abeer and Anton, Josefa and Asangba, Abigail and Billings, Emma K. and Cantu, Vito Adrian and Carlton, Jane M. and Cazares, Daniel and Cho, Gyu-Sung and Condeff, Tess and Cortés, Pilar and Cranfield, Mike and Cuevas, Daniel A. and De la Iglesia, Rodrigo and Decewicz, Przemyslaw and Doane, Michael P. and Dominy, Nathaniel J. and Dziewit, Lukasz and Elwasila, Bashir Mukhtar and Eren, A. Murat and Franz, Charles and Fu, Jingyuan and Garcia-Aljaro, Cristina and Ghedin, Elodie and Gulino, Kristen M. and Haggerty, John M. and Head, Steven R. and Hendriksen, Rene S. and Hill, Colin and Hyöty, Heikki and Ilina, Elena N. and Irwin, Mitchell T. and Jeffries, Thomas C. and Jofre, Juan and Junge, Randall E. and Kelley, Scott T. and Khan Mirzaei, Mohammadali and Kowalewski, Martin and Kumaresan, Deepak and Leigh, Steven R. and Lipson, David and Lisitsyna, Eugenia S. and Llagostera, Montserrat and Maritz, Julia M. and Marr, Linsey C. and McCann, Angela and Molshanski-Mor, Shahar and Monteiro, Silvia and Moreira-Grez, Benjamin and Morris, Megan and Mugisha, Lawrence and Muniesa, Maite and Neve, Horst and Nguyen, Nam-phuong and Nigro, Olivia D. and Nilsson, Anders S. and O’Connell, Taylor and Odeh, Rasha and Oliver, Andrew and Piuri, Mariana and Prussin II, Aaron J. and Qimron, Udi and Quan, Zhe-Xue and Rainetova, Petra and Ramírez-Rojas, Adán and Raya, Raul and Reasor, Kim and Rice, Gillian A. O. and Rossi, Alessandro and Santos, Ricardo and Shimashita, John and Stachler, Elyse N. and Stene, Lars C. and Strain, Ronan and Stumpf, Rebecca and Torres, Pedro J. and Twaddle, Alan and Ugochi Ibekwe, MaryAnn and Villagra, Nicolás and Wandro, Stephen and White, Bryan and Whiteley, Andy and Whiteson, Katrine L. and Wijmenga, Cisca and Zambrano, Maria M. and Zschach, Henrike and Dutilh, Bas E.}, + month = oct, + year = {2019}, + note = {Number: 10 +Publisher: Nature Publishing Group}, + keywords = {Microbiome, Environmental microbiology, Bacteriophages}, + pages = {1727--1736}, + file = {Accepted Version:/home/acs98/Zotero/storage/CIR3DGV7/Edwards et al. - 2019 - Global phylogeography and ancient evolution of the.pdf:application/pdf}, +} + +@article{diaz-riano_computational_2019, + title = {Computational search for {UV} radiation resistance strategies in {Deinococcus} swuensis isolated from {Paramo} ecosystems}, + volume = {14}, + issn = {1932-6203}, + url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0221540}, + doi = {10.1371/journal.pone.0221540}, + abstract = {Ultraviolet radiation (UVR) is widely known as deleterious for many organisms since it can cause damage to biomolecules either directly or indirectly via the formation of reactive oxygen species. The goal of this study was to analyze the capacity of high-mountain Espeletia hartwegiana plant phyllosphere microorganisms to survive UVR and to identify genes related to resistance strategies. A strain of Deinococcus swuensis showed a high survival rate of up to 60\% after UVR treatment at 800J/m2 and was used for differential expression analysis using RNA-seq after exposing cells to 400J/m2 of UVR (with {\textgreater}95\% survival rate). Differentially expressed genes were identified using the R-Bioconductor package NOISeq and compared with other reported resistance strategies reported for this genus. Genes identified as being overexpressed included transcriptional regulators and genes involved in protection against damage by UVR. Non-coding (nc)RNAs were also differentially expressed, some of which have not been previously implicated. This study characterized the immediate radiation response of D. swuensis and indicates the involvement of ncRNAs in the adaptation to extreme environmental conditions.}, + language = {en}, + number = {12}, + urldate = {2024-01-22}, + journal = {PLOS ONE}, + author = {Díaz-Riaño, Jorge and Posada, Leonardo and Acosta, Iván Camilo and Ruíz-Pérez, Carlos and García-Castillo, Catalina and Reyes, Alejandro and Zambrano, María Mercedes}, + month = dec, + year = {2019}, + note = {Publisher: Public Library of Science}, + keywords = {Gene expression, RNA sequencing, Genomics, Ribosomal RNA, Cellular stress responses, Non-coding RNA, Ultraviolet C, Ultraviolet radiation}, + pages = {e0221540}, + file = {Full Text PDF:/home/acs98/Zotero/storage/2W5XEV4R/Díaz-Riaño et al. - 2019 - Computational search for UV radiation resistance s.pdf:application/pdf}, +} + +@article{keane_international_2020, + title = {International consensus definition of low anterior resection syndrome}, + volume = {22}, + copyright = {© 2020 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Society of Colon and Rectal Surgeons, by John Wiley \& Sons Limited on behalf of the Association of Coloproctology of Great Britain and Ireland and by John Wiley \& Sons Australia on behalf of the Royal Australasian College of Surgeons. This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in anyway or used commercially without permission from the journal.}, + issn = {1463-1318}, + url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/codi.14957}, + doi = {10.1111/codi.14957}, + abstract = {Aim Low anterior resection syndrome (LARS) is pragmatically defined as disordered bowel function after rectal resection leading to a detriment in quality of life. This broad characterization does not allow for precise estimates of prevalence. The LARS score was designed as a simple tool for clinical evaluation of LARS. Although the LARS score has good clinical utility, it may not capture all important aspects that patients may experience. The aim of this collaboration was to develop an international consensus definition of LARS that encompasses all aspects of the condition and is informed by all stakeholders. Method This international patient–provider initiative used an online Delphi survey, regional patient consultation meetings, and an international consensus meeting. Three expert groups participated: patients, surgeons and other health professionals from five regions (Australasia, Denmark, Spain, Great Britain and Ireland, and North America) and in three languages (English, Spanish, and Danish). The primary outcome measured was the priorities for the definition of LARS. Results Three hundred twenty-five participants (156 patients) registered. The response rates for successive rounds of the Delphi survey were 86\%, 96\% and 99\%. Eighteen priorities emerged from the Delphi survey. Patient consultation and consensus meetings refined these priorities to eight symptoms and eight consequences that capture essential aspects of the syndrome. Sampling bias may have been present, in particular, in the patient panel because social media was used extensively in recruitment. There was also dominance of the surgical panel at the final consensus meeting despite attempts to mitigate this. Conclusion This is the first definition of LARS developed with direct input from a large international patient panel. The involvement of patients in all phases has ensured that the definition presented encompasses the vital aspects of the patient experience of LARS. The novel separation of symptoms and consequences may enable greater sensitivity to detect changes in LARS over time and with intervention.}, + language = {en}, + number = {3}, + urldate = {2024-01-22}, + journal = {Colorectal Disease}, + author = {Keane, C. and Fearnhead, N. S. and Bordeianou, L. and Christensen, P. and Espin Basany, E. and Laurberg, S. and Mellgren, A. and Messick, C. and Orangio, G. R. and Verjee, A. and Wing, K. and Bissett, I. and Group, the LARS International Collaborative}, + year = {2020}, + note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/codi.14957}, + keywords = {Consensus definition, low anterior resection syndrome, patient-reported, rectal resection}, + pages = {331--341}, + file = {Full Text PDF:/home/acs98/Zotero/storage/K2IENMF2/Keane et al. - 2020 - International consensus definition of low anterior.pdf:application/pdf}, +} + +@article{reyes_paving_2020, + title = {Paving the {Way} to {Unveil} the {Diversity} and {Evolution} of {Phage} {Genomes}}, + volume = {12}, + copyright = {http://creativecommons.org/licenses/by/3.0/}, + issn = {1999-4915}, + url = {https://www.mdpi.com/1999-4915/12/9/905}, + doi = {10.3390/v12090905}, + abstract = {Phage biology has been developing for the last hundred years, and the potential of phages as tools and treatments has been known since their early discovery. However, the lack of knowledge of the molecular mechanisms coded in phage genomes hindered the development of the field. With current molecular methods, the last decade has been a resurgence of the field. The Special Issue on “Diversity and Evolution of Phage Genomes” is a great example with its 17 manuscripts published. It covers some of the latest methods to sample and characterize environmental and host associated viromes, considering experimental biases and computational developments. Furthermore, the use of molecular tools coupled with traditional methods has allowed to isolate and characterize viruses from different hosts and environments with such diversity that even a new viral class is being proposed. The viruses described cover all different phage families and lifestyles. However, is not only about diversity; the molecular evolution is studied in a set of manuscripts looking at phage-host interactions and their capacity to uncover the frequency and type of mutations behind the bacterial resistance mechanisms and viral pathogenesis, and such methods are opening new ways into identifying potential receptors and characterizing the bacterial host range.}, + language = {en}, + number = {9}, + urldate = {2024-01-22}, + journal = {Viruses}, + author = {Reyes, Alejandro and Vives, Martha J.}, + month = sep, + year = {2020}, + note = {Number: 9 +Publisher: Multidisciplinary Digital Publishing Institute}, + keywords = {molecular methods, next generation sequencing, viral diversity, viral evolution, viromes}, + pages = {905}, + file = {Full Text PDF:/home/acs98/Zotero/storage/AL2H5EXP/Reyes and Vives - 2020 - Paving the Way to Unveil the Diversity and Evoluti.pdf:application/pdf}, +} + +@article{garcia-vega_diet_2020, + title = {Diet {Quality}, {Food} {Groups} and {Nutrients} {Associated} with the {Gut} {Microbiota} in a {Nonwestern} {Population}}, + volume = {12}, + copyright = {http://creativecommons.org/licenses/by/3.0/}, + issn = {2072-6643}, + url = {https://www.mdpi.com/2072-6643/12/10/2938}, + doi = {10.3390/nu12102938}, + abstract = {Diet plays an important role in shaping gut microbiota. However, much remains to be learned regarding this association. We analyzed dietary intake and gut microbiota in a community-dwelling cohort of 441 Colombians. Diet quality, intake of food groups and nutrient consumption were paired with microbial diversity and composition using linear regressions, Procrustes analyses and a random-forest machine-learning algorithm. Analyses were adjusted for potential confounders, including the five cities from where the participants originated, sex (male, female), age group (18–40 and 41–62 years), BMI (lean, overweight, obese) and socioeconomic status. Microbial diversity was higher in individuals with increased intake of nutrients obtained from plant-food sources, whereas the intake of food groups and nutrients correlated with microbiota structure. Random-forest regressions identified microbial communities associated with different diet components. Two remarkable results confirmed previous expectations regarding the link between diet and microbiota: communities composed of short-chain fatty acid (SCFA) producers were more prevalent in the microbiota of individuals consuming diets rich in fiber and plant-food sources, such as fruits, vegetables and beans. In contrast, an inflammatory microbiota composed of bile-tolerant and putrefactive microorganisms along with opportunistic pathogens thrived in individuals consuming diets enriched in animal-food sources and of low quality, i.e., enriched in ultraprocessed foods and depleted in dietary fiber. This study expands our understanding of the relationship between dietary intake and gut microbiota. We provide evidence that diet is strongly associated with the gut microbial community and highlight generalizable connections between them.}, + language = {en}, + number = {10}, + urldate = {2024-01-22}, + journal = {Nutrients}, + author = {García-Vega, Ángela S. and Corrales-Agudelo, Vanessa and Reyes, Alejandro and Escobar, Juan S.}, + month = oct, + year = {2020}, + note = {Number: 10 +Publisher: Multidisciplinary Digital Publishing Institute}, + keywords = {16S rRNA, gut microbiome, 24-h dietary recall, Colombians, community dwellers, food consumption, short-chain fatty acids}, + pages = {2938}, + file = {Full Text PDF:/home/acs98/Zotero/storage/Y3BNA5J6/García-Vega et al. - 2020 - Diet Quality, Food Groups and Nutrients Associated.pdf:application/pdf}, +} + +@incollection{adriaenssens_abolish_2021, + title = {Abolish the order {Caudovirales} and the families {Myoviridae}, {Siphoviridae} and {Podoviridae} ({Caudoviricetes})}, + abstract = {Here we propose to abolish the order Caudovirales keeping all underlying taxonomic ranks in the class Caudoviricetes. We also propose to abolish the morphology-based phage families Myoviridae, Siphoviridae and Podoviridae which have been repeatedly shown not to be monophyletic.}, + booktitle = {International {Committee} on {Taxonomy} of {Viruses}}, + publisher = {International Committee on Taxonomy of Viruses}, + author = {Adriaenssens, Evelien and Kropinski, AM and Turner, Dan and Krupovic, Mart and Millard, A and Dutilh, BE and Oksanen, HM and Lood, C and Reyes, A and Moraru, C and Aziz, RK and Tong, Y and Barylski, J and Łobocka, M and Sarkar, BL and Gillis, A and van Zyl, LJ and Lehman, SM and Sullivan, M and Wittman, J and Kushkina, AI and Knezevic, P and Brister, JR and Edwards, RA and Kurtböke, DI and Poranen, MM and Lavigne, R and Shkoporov, AN and Uchiyama, J and Moreno-Switt, AI and Enault, F}, + year = {2021}, + keywords = {Caudovirales, Caudoviricetes, monophyletic, Myoviridae, Podoviridae, Siphoviridae, Taxonomic}, +} + +@article{cardenas_bacterial_2021, + title = {Bacterial meta-analysis of chicken cecal microbiota}, + volume = {9}, + issn = {2167-8359}, + url = {https://peerj.com/articles/10571}, + doi = {10.7717/peerj.10571}, + abstract = {Poultry production is an industry that generates 90,000 metric tons of chicken meat worldwide. Thus, optimizing chicken growth and sustainable production is of great importance. A central factor determining not only production parameters, but also stability of the immune system and chicken health, is the diversity and variability of the microbiota present throughout the gastrointestinal tract. To date, several studies have investigated the relationship between bacterial communities and the gut microbiome, with limited data to compare. This study aims to create a bacterial meta-analysis based on studies using amplicon sequencing with Illumina sequencing technologies in order to build a baseline for comparison in future analyses of the cecal bacterial composition in chicken. A systematic literature review was performed (SYRF ID: e84f0468-e418-4eec-9da4-b517f1b4809d. Full project URL: https://app.syrf.org.uk/projects/e84f0468-e418-4eec-9da4-b517f1b4809d/detail). From all the available and analyzed manuscripts only nine contained full raw-sequence data available and the corresponding metadata. A total of 324 samples, comprising three different regions within the 16S rRNA gene, were analyzed. Due to the heterogeneity of the data, each region was analyzed independently and an effort for a joint analysis was performed as well. Taxonomic profiling revealed 11 phyla, with Firmicutes as the most prevalent phylum, followed by Bacteroidetes and Proteobacteria. At genus level, 109 genera were found. Shannon metric for alpha diversity showed that factors like type of chickens (Commercial or experimental) and 16S rRNA gene subregion have negligible effect on diversity. Despite the large number of parameters that were taken into account, the identification of common bacteria showed five genera to be common for all sets in at least 50\% of the samples. These genera are highly associated to cellulose degradation and short chain fatty acids synthesis. In general, it was possible to identify some commonalities in the bacterial cecal microbial community despite the extensive variability and factors differing from one study to another.}, + language = {en}, + urldate = {2024-01-22}, + journal = {PeerJ}, + author = {Cardenas, Luis Alberto Chica and Clavijo, Viviana and Vives, Martha and Reyes, Alejandro}, + month = jan, + year = {2021}, + note = {Publisher: PeerJ Inc.}, + pages = {e10571}, + file = {Full Text PDF:/home/acs98/Zotero/storage/MXCS4ZK2/Cardenas et al. - 2021 - Bacterial meta-analysis of chicken cecal microbiot.pdf:application/pdf}, +} + +@article{hufsky_computational_2021, + title = {Computational strategies to combat {COVID}-19: useful tools to accelerate {SARS}-{CoV}-2 and coronavirus research}, + volume = {22}, + issn = {1477-4054}, + shorttitle = {Computational strategies to combat {COVID}-19}, + url = {https://doi.org/10.1093/bib/bbaa232}, + doi = {10.1093/bib/bbaa232}, + abstract = {SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of coronaviruses has been studied for many years. However, bioinformatics tools designed explicitly for SARS-CoV-2 have only recently been developed as a rapid reaction to the need for fast detection, understanding and treatment of COVID-19. To control the ongoing COVID-19 pandemic, it is of utmost importance to get insight into the evolution and pathogenesis of the virus. In this review, we cover bioinformatics workflows and tools for the routine detection of SARS-CoV-2 infection, the reliable analysis of sequencing data, the tracking of the COVID-19 pandemic and evaluation of containment measures, the study of coronavirus evolution, the discovery of potential drug targets and development of therapeutic strategies. For each tool, we briefly describe its use case and how it advances research specifically for SARS-CoV-2. All tools are free to use and available online, either through web applications or public code repositories. Contact:evbc@unj-jena.de}, + number = {2}, + urldate = {2024-01-22}, + journal = {Briefings in Bioinformatics}, + author = {Hufsky, Franziska and Lamkiewicz, Kevin and Almeida, Alexandre and Aouacheria, Abdel and Arighi, Cecilia and Bateman, Alex and Baumbach, Jan and Beerenwinkel, Niko and Brandt, Christian and Cacciabue, Marco and Chuguransky, Sara and Drechsel, Oliver and Finn, Robert D and Fritz, Adrian and Fuchs, Stephan and Hattab, Georges and Hauschild, Anne-Christin and Heider, Dominik and Hoffmann, Marie and Hölzer, Martin and Hoops, Stefan and Kaderali, Lars and Kalvari, Ioanna and von Kleist, Max and Kmiecinski, Renó and Kühnert, Denise and Lasso, Gorka and Libin, Pieter and List, Markus and Löchel, Hannah F and Martin, Maria J and Martin, Roman and Matschinske, Julian and McHardy, Alice C and Mendes, Pedro and Mistry, Jaina and Navratil, Vincent and Nawrocki, Eric P and O’Toole, Áine Niamh and Ontiveros-Palacios, Nancy and Petrov, Anton I and Rangel-Pineros, Guillermo and Redaschi, Nicole and Reimering, Susanne and Reinert, Knut and Reyes, Alejandro and Richardson, Lorna and Robertson, David L and Sadegh, Sepideh and Singer, Joshua B and Theys, Kristof and Upton, Chris and Welzel, Marius and Williams, Lowri and Marz, Manja}, + month = mar, + year = {2021}, + pages = {642--663}, + file = {Full Text PDF:/home/acs98/Zotero/storage/LFJZZYKV/Hufsky et al. - 2021 - Computational strategies to combat COVID-19 usefu.pdf:application/pdf}, +} + +@article{gradaschi_genome_2021, + title = {Genome {Sequence} and {Characterization} of {Lactobacillus} casei {Phage}, {vB}\_LcaM\_Lbab1 {Isolated} from {Raw} {Milk}}, + volume = {2}, + issn = {2641-6530}, + url = {https://www.liebertpub.com/doi/abs/10.1089/phage.2020.0029}, + doi = {10.1089/phage.2020.0029}, + abstract = {Introduction: Only a few Lactobacillus casei phages have so far been characterized. As several L. casei strains are part of probiotic formulations, bacteriophage outbreaks targeting these strains can lead to critical losses within the dairy industry. + +Materials and Methods: A new L. casei phage was isolated from raw milk obtained from a milking yard from the province of Buenos Aires. The phage genome was sequenced, annotated, and analyzed. Morphology was determined by electron microscopy and the host range was established. + +Results:Lactobacillus phage vB\_LcaM\_Lbab1 is a member of the Herelleviridae family and features a host range including L. casei/Lactobacillus paracasei and Lactobacillus kefiri strains. We further analyzed the baseplate proteins in silico and found putative carbohydrate binding modules that are responsible for host recognition in other Lactobacillus phages. + +Conclusions: A new Lactobacillus phage was isolated and characterized. The focus was made on its host recognition mechanism, pointing toward the development of future strategies to avoid deleterious infections in the dairy industry.}, + number = {1}, + urldate = {2024-01-22}, + journal = {PHAGE}, + author = {Gradaschi, Victoria and Payaslian, Florencia and Dieterle, Maria Eugenia and Rondón Salazar, Liliana and Urdániz, Estefanía and Di Paola, Matias and Peña Cárcamo, José and Zon, Fabio and Allievi, Mariana and Sosa, Ezequiel and Fernandez Do Porto, Darío and Dunne, Matthew and Goeller, Pauline and Klumpp, Jochen and Raya, Raúl Ricardo and Reyes, Alejandro and Piuri, Mariana}, + month = mar, + year = {2021}, + note = {Publisher: Mary Ann Liebert, Inc., publishers}, + keywords = {probiotics, Lactobacillus casei, Lactobacillus phage}, + pages = {57--63}, + file = {Full Text:/home/acs98/Zotero/storage/6F82GJC5/Gradaschi et al. - 2021 - Genome Sequence and Characterization of Lactobacil.pdf:application/pdf}, +} + +@article{payaslian_tightening_2021, + title = {Tightening {Bonds} in {Latin} {America} {Through} {Phage} {Discovery}}, + volume = {2}, + issn = {2641-6530}, + url = {https://www.liebertpub.com/doi/full/10.1089/phage.2020.0028}, + doi = {10.1089/phage.2020.0028}, + abstract = {Between 2015 and 2019, we hosted an International Phage Course at Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Argentina. The 2-week full-time course was hands-on and included lectures from renowned phage biologists. Participating students were able to meet and discuss with recognized experts from around the world in a familiar setting, facilitating the establishment of scientific collaborations and the expansion of their networks. Eighty-four students from 14 Latin American countries have participated in the course, which included isolation, characterization, genome sequencing, and annotation of novel phages. We have successfully created a coursework that enabled the acquisition of new knowledge and expertise in bacteriophage biology and strengthened ties among Latin American colleagues.}, + number = {1}, + urldate = {2024-01-22}, + journal = {PHAGE}, + author = {Payaslian, Florencia and Gradaschi, Victoria and Rondón Salazar, Liliana and Dieterle, Maria Eugenia and Urdániz, Estefanía and Di Paola, Matias and Zon, Fabio and Allievi, Mariana and Sanchez Rivas, Carmen and Raya, Raúl Ricardo and Reyes, Alejandro and Piuri, Mariana}, + month = mar, + year = {2021}, + note = {Publisher: Mary Ann Liebert, Inc., publishers}, + keywords = {Lactobacillus phage, bacteriophage education, Latin America, Mycobacterium phage}, + pages = {7--10}, + file = {Full Text PDF:/home/acs98/Zotero/storage/ULIRLYT8/Payaslian et al. - 2021 - Tightening Bonds in Latin America Through Phage Di.pdf:application/pdf}, +} + +@article{payaslian_isolation_2021, + title = {Isolation and {Characterization} of {vB}\_MsmS\_Celfi: {A} {New} {Mycobacterium} tuberculosis {Bacteriophage}}, + volume = {2}, + issn = {2641-6530}, + shorttitle = {Isolation and {Characterization} of {vB}\_MsmS\_Celfi}, + url = {https://www.liebertpub.com/doi/abs/10.1089/phage.2020.0030}, + doi = {10.1089/phage.2020.0030}, + abstract = {Introduction: Because of the clinical relevance of Mycobacteria, and from a therapeutic perspective, there is an increasing interest to study phages that infect bacteria belonging to this genus. + +Materials and Methods: A phage was isolated from a soil sample, using Mycobacterium smegmatis as host. Its characterization included sequencing, annotation, and analysis of the genome, host range determination, and electron microscopy imaging. + +Results:Mycobacterium phage vB\_MsmS\_Celfi is a temperate phage able to infect Mycobacterium tuberculosis with high efficiency. From electron microscopy images, Celfi belongs to the Siphoviridae family. Genome analysis classified phage Celfi into cluster L, subcluster L2 of Actinobacteriophage clusters. Mycobacterium phage Celfi exhibits a Lysin B distant to those present in other members of the subcluster and other mycobacteriophages. + +Conclusions: The discovery of new phages that infect M. tuberculosis could contribute to the development of novel tools for detection systems and future treatment of the disease.}, + number = {1}, + urldate = {2024-01-22}, + journal = {PHAGE}, + author = {Payaslian, Florencia and Gradaschi, Victoria and Rondón Salazar, Liliana and Dieterle, Maria Eugenia and Urdániz, Estefanía and Di Paola, Matias and Peña Cárcamo, José and Zon, Fabio and Sosa, Ezequiel and Fernandez Do Porto, Darío and Dunne, Matthew and Goeller, Pauline and Klumpp, Jochen and Raya, Raúl Ricardo and Reyes, Alejandro and Piuri, Mariana}, + month = mar, + year = {2021}, + note = {Publisher: Mary Ann Liebert, Inc., publishers}, + keywords = {Mycobacterium phage, LysB, M. tuberculosis}, + pages = {43--49}, + file = {Full Text:/home/acs98/Zotero/storage/SP4BXRJ3/Payaslian et al. - 2021 - Isolation and Characterization of vB_MsmS_Celfi A.pdf:application/pdf}, +} + +@article{quiroga-gonzalez_monitoring_2021, + title = {Monitoring the variation in the gut microbiota of captive woolly monkeys related to changes in diet during a reintroduction process}, + volume = {11}, + copyright = {2021 The Author(s)}, + issn = {2045-2322}, + url = {https://www.nature.com/articles/s41598-021-85990-0}, + doi = {10.1038/s41598-021-85990-0}, + abstract = {Microbiome is known to play an important role in the health of organisms and different factors such as diet have been associated with modifications in microbial communities. Differences in the microbiota composition of wild and captive animals has been evaluated; however, variation during a reintroduction process in primates has never been reported. Our aim was to identify changes in the bacterial composition of three individuals of reintroduced woolly monkeys (Lagothrix lagothricha) and the variables associated with such changes. Fecal samples were collected and the V4 region of the 16S rRNA gene was sequenced to determine gut microbial composition and functionality. Individual samples from released individuals showed a higher microbial diversity after being released compared to before liberation, associated with changes in their diet. Beta diversity and functionality analysis showed separation of samples from released and captive conditions and the major factor of variation was the moment of liberation. This study shows that intestinal microbiota varies depending on site conditions and is mainly associated with diet diversity. The intake of food from wild origin by released primates may promote a positive effect on gut microbiota, improving health, and potentially increasing success in reintroduction processes.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Scientific Reports}, + author = {Quiroga-González, Camilo and Cardenas, Luis Alberto Chica and Ramírez, Mónica and Reyes, Alejandro and González, Camila and Stevenson, Pablo R.}, + month = mar, + year = {2021}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Metagenomics, Ecology, Microbiology, Conservation biology}, + pages = {6522}, + file = {Full Text PDF:/home/acs98/Zotero/storage/LCIZAAWY/Quiroga-González et al. - 2021 - Monitoring the variation in the gut microbiota of .pdf:application/pdf}, +} + +@article{lopez-leal_novel_2021, + title = {A novel vieuvirus from multidrug-resistant {Acinetobacter} baumannii}, + volume = {166}, + issn = {1432-8798}, + url = {https://doi.org/10.1007/s00705-021-05010-4}, + doi = {10.1007/s00705-021-05010-4}, + abstract = {Bacteriophages are considered the most abundant biological entities on earth, and they are able to modulate the populations of their bacterial hosts. Although the potential of bacteriophages has been accepted as an alternative strategy to combat multidrug-resistant pathogenic bacteria, there still exists a considerable knowledge gap regarding their genetic diversity, which hinders their use as antimicrobial agents. In this study, we undertook a genomic and phylogenetic characterization of the phage Ab11510-phi, which was isolated from a multidrug-resistant Acinetobacter baumannii strain (Ab11510). We found that Ab11510-phi has a narrow host range and belongs to a small group of transposable phages of the genus Vieuvirus that have only been reported to infect Acinetobacter bacteria. Finally, we showed that Ab11510-phi (as well as other vieuvirus phages) has a high level of mosaicism. On a broader level, we demonstrate that comparative genomics and phylogenetic analysis are necessary tools for the proper characterization of phage diversity.}, + language = {en}, + number = {5}, + urldate = {2024-01-22}, + journal = {Archives of Virology}, + author = {López-Leal, Gamaliel and Reyes-Muñoz, Alejandro and Santamaria, Rosa Isela and Cevallos, Miguel A. and Pérez-Monter, Carlos and Castillo-Ramírez, Santiago}, + month = may, + year = {2021}, + pages = {1401--1408}, +} + +@article{vasquez_discovery_2021, + title = {Discovery of new potential {CDK2}/{VEGFR2} type {II} inhibitors by fragmentation and virtual screening of natural products}, + volume = {39}, + issn = {0739-1102}, + url = {https://doi.org/10.1080/07391102.2020.1763839}, + doi = {10.1080/07391102.2020.1763839}, + abstract = {Cyclin-Dependent Kinase 2 (CDK2) and Vascular Endothelial Growth Factor Receptor (VEGFR2) have largely been considered as attractive targets for developing anticancer agents. However, there is no dual inhibitor commercially available in the market that interacts simultaneously with the allosteric back pocket of these enzymes. We applied a combined computational strategy that started with the generation of two overlapping pharmacophore models of both kinases at ‘inactive’ conformation. Next, several virtual libraries of natural products, including the databases TCM (Traditional Chinese Medicine), UEFS (Universidade Estadual de Feira de Santana), NuBBE (Nuclei of Bioassays, Biosynthesis, and Ecophysiology of Natural Products) and AfroDb (African Medicinal Plants Database) were deconstructed using a non-extensive version of the approach RECAP (retrosynthetic combinatorial analysis procedure). These natural-product-derived fragments (NPDFs) were screened and merged into drug-sized compounds, which were filtered by Lipinski’s Rule-of-five (Ro5) and docking. As a result, two pharmacophore models, namely Hypo1 and Hypo2, were developed with an accuracy of 0.94 and 0.84, respectively. Deconstruction of natural products produced a set of 16655 unique non-extensive NPDFs that were screened against both pharmacophore models. Finally, after merging, Ro5-filtering and docking, we obtained a set of 20 hit compounds predicted to be diverse, developable, synthesizable and potent. The computational strategy proved successful to find virtual candidates of kinase inhibitors and therefore contributes to the identification of innovative multi-target compounds with potential anticancer activity. Communicated by Ramaswamy H. Sarma}, + number = {9}, + urldate = {2024-01-22}, + journal = {Journal of Biomolecular Structure and Dynamics}, + author = {Vásquez, Andrés Felipe and Reyes Muñoz, Alejandro and Duitama, Jorge and González Barrios, Andrés}, + month = jun, + year = {2021}, + pmid = {32362218}, + note = {Publisher: Taylor \& Francis +\_eprint: https://doi.org/10.1080/07391102.2020.1763839}, + keywords = {molecular docking, multi-target ligands, pharmacophore modeling, RECAP, virtual screening}, + pages = {3285--3299}, + file = {Submitted Version:/home/acs98/Zotero/storage/EGVLLJVT/Vásquez et al. - 2021 - Discovery of new potential CDK2VEGFR2 type II inh.pdf:application/pdf}, +} + +@article{moreno-gallego_informative_2021, + title = {Informative {Regions} {In} {Viral} {Genomes}}, + volume = {13}, + copyright = {http://creativecommons.org/licenses/by/3.0/}, + issn = {1999-4915}, + url = {https://www.mdpi.com/1999-4915/13/6/1164}, + doi = {10.3390/v13061164}, + abstract = {Viruses, far from being just parasites affecting hosts’ fitness, are major players in any microbial ecosystem. In spite of their broad abundance, viruses, in particular bacteriophages, remain largely unknown since only about 20\% of sequences obtained from viral community DNA surveys could be annotated by comparison with public databases. In order to shed some light into this genetic dark matter we expanded the search of orthologous groups as potential markers to viral taxonomy from bacteriophages and included eukaryotic viruses, establishing a set of 31,150 ViPhOGs (Eukaryotic Viruses and Phages Orthologous Groups). To do this, we examine the non-redundant viral diversity stored in public databases, predict proteins in genomes lacking such information, and used all annotated and predicted proteins to identify potential protein domains. The clustering of domains and unannotated regions into orthologous groups was done using cogSoft. Finally, we employed a random forest implementation to classify genomes into their taxonomy and found that the presence or absence of ViPhOGs is significantly associated with their taxonomy. Furthermore, we established a set of 1457 ViPhOGs that given their importance for the classification could be considered as markers or signatures for the different taxonomic groups defined by the ICTV at the order, family, and genus levels.}, + language = {en}, + number = {6}, + urldate = {2024-01-22}, + journal = {Viruses}, + author = {Moreno-Gallego, Jaime Leonardo and Reyes, Alejandro}, + month = jun, + year = {2021}, + note = {Number: 6 +Publisher: Multidisciplinary Digital Publishing Institute}, + keywords = {eukaryotic viruses, orthologous gropus, phages, random forest, ViPhOGs}, + pages = {1164}, + file = {Full Text PDF:/home/acs98/Zotero/storage/PP73HYWR/Moreno-Gallego and Reyes - 2021 - Informative Regions In Viral Genomes.pdf:application/pdf}, +} + +@article{krupovic_bacterial_2021, + title = {Bacterial {Viruses} {Subcommittee} and {Archaeal} {Viruses} {Subcommittee} of the {ICTV}: update of taxonomy changes in 2021}, + volume = {166}, + issn = {1432-8798}, + shorttitle = {Bacterial {Viruses} {Subcommittee} and {Archaeal} {Viruses} {Subcommittee} of the {ICTV}}, + url = {https://doi.org/10.1007/s00705-021-05205-9}, + doi = {10.1007/s00705-021-05205-9}, + abstract = {In this article, we – the Bacterial Viruses Subcommittee and the Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) – summarise the results of our activities for the period March 2020 – March 2021. We report the division of the former Bacterial and Archaeal Viruses Subcommittee in two separate Subcommittees, welcome new members, a new Subcommittee Chair and Vice Chair, and give an overview of the new taxa that were proposed in 2020, approved by the Executive Committee and ratified by vote in 2021. In particular, a new realm, three orders, 15 families, 31 subfamilies, 734 genera and 1845 species were newly created or redefined (moved/promoted).}, + language = {en}, + number = {11}, + urldate = {2024-01-22}, + journal = {Archives of Virology}, + author = {Krupovic, Mart and Turner, Dann and Morozova, Vera and Dyall-Smith, Mike and Oksanen, Hanna M. and Edwards, Rob and Dutilh, Bas E. and Lehman, Susan M. and Reyes, Alejandro and Baquero, Diana P. and Sullivan, Matthew B. and Uchiyama, Jumpei and Nakavuma, Jesca and Barylski, Jakub and Young, Mark J. and Du, Shishen and Alfenas-Zerbini, Poliane and Kushkina, Alla and Kropinski, Andrew M. and Kurtböke, Ipek and Brister, J. Rodney and Lood, Cédric and Sarkar, B. L. and Yigang, Tong and Liu, Ying and Huang, Li and Wittmann, Johannes and Chanishvili, Nina and van Zyl, Leonardo J. and Rumnieks, Janis and Mochizuki, Tomohiro and Jalasvuori, Matti and Aziz, Ramy K. and Łobocka, Małgorzata and Stedman, Kenneth M. and Shkoporov, Andrey N. and Gillis, Annika and Peng, Xu and Enault, François and Knezevic, Petar and Lavigne, Rob and Rhee, Sung-Keun and Cvirkaite-Krupovic, Virginija and Moraru, Cristina and Moreno Switt, Andrea I. and Poranen, Minna M. and Millard, Andrew and Prangishvili, David and Adriaenssens, Evelien M.}, + month = nov, + year = {2021}, + pages = {3239--3244}, + file = {Full Text PDF:/home/acs98/Zotero/storage/8C43ERNK/Krupovic et al. - 2021 - Bacterial Viruses Subcommittee and Archaeal Viruse.pdf:application/pdf}, +} + +@article{ayala-usma_whole_2021, + title = {A whole genome duplication drives the genome evolution of {Phytophthora} betacei, a closely related species to {Phytophthora} infestans}, + volume = {22}, + issn = {1471-2164}, + url = {https://doi.org/10.1186/s12864-021-08079-y}, + doi = {10.1186/s12864-021-08079-y}, + abstract = {Pathogens of the genus Phytophthora are the etiological agents of many devastating diseases in several high-value crops and forestry species such as potato, tomato, cocoa, and oak, among many others. Phytophthora betacei is a recently described species that causes late blight almost exclusively in tree tomatoes, and it is closely related to Phytophthora infestans that causes the disease in potato crops and other Solanaceae. This study reports the assembly and annotation of the genomes of P. betacei P8084, the first of its species, and P. infestans RC1-10, a Colombian strain from the EC-1 lineage, using long-read SMRT sequencing technology.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {BMC Genomics}, + author = {Ayala-Usma, David A. and Cárdenas, Martha and Guyot, Romain and Mares, Maryam Chaib De and Bernal, Adriana and Muñoz, Alejandro Reyes and Restrepo, Silvia}, + month = nov, + year = {2021}, + pages = {795}, + file = {Full Text PDF:/home/acs98/Zotero/storage/NNGUW8R3/Ayala-Usma et al. - 2021 - A whole genome duplication drives the genome evolu.pdf:application/pdf}, +} + +@article{restrepo_microbial_2021, + title = {Microbial community characterization of shrimp survivors to {AHPND} challenge test treated with an effective shrimp probiotic ({Vibrio} diabolicus)}, + volume = {9}, + issn = {2049-2618}, + url = {https://doi.org/10.1186/s40168-021-01043-8}, + doi = {10.1186/s40168-021-01043-8}, + abstract = {Acute hepatopancreatic necrosis disease (AHPND) is an important shrimp bacterial disease caused by some Vibrio species. The severity of the impact of this disease on aquaculture worldwide has made it necessary to develop alternatives to prophylactic antibiotics use, such as the application of probiotics. To assess the potential to use probiotics in order to limit the detrimental effects of AHNPD, we evaluated the effect of the ILI strain, a Vibrio sp. bacterium and efficient shrimp probiotic, using metabarcoding (16S rRNA gene) on the gastrointestinal microbiota of shrimp after being challenged with AHPND-causing V. parahaemolyticus.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Microbiome}, + author = {Restrepo, Leda and Domínguez-Borbor, Cristóbal and Bajaña, Leandro and Betancourt, Irma and Rodríguez, Jenny and Bayot, Bonny and Reyes, Alejandro}, + month = apr, + year = {2021}, + keywords = {Microbiome, Probiotics, Metagenomics, Comparative genomics, Acute hepatopancreatic necrosis disease (AHPND), Horizontal gene transfer (HGT), Vibrio diabolicus}, + pages = {88}, + file = {Full Text PDF:/home/acs98/Zotero/storage/BJKKG6FP/Restrepo et al. - 2021 - Microbial community characterization of shrimp sur.pdf:application/pdf}, +} + +@article{dutilh_perspective_2021, + title = {Perspective on taxonomic classification of uncultivated viruses}, + volume = {51}, + issn = {1879-6257}, + url = {https://www.sciencedirect.com/science/article/pii/S1879625721001334}, + doi = {10.1016/j.coviro.2021.10.011}, + abstract = {Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries.}, + urldate = {2024-01-22}, + journal = {Current Opinion in Virology}, + author = {Dutilh, Bas E and Varsani, Arvind and Tong, Yigang and Simmonds, Peter and Sabanadzovic, Sead and Rubino, Luisa and Roux, Simon and Muñoz, Alejandro Reyes and Lood, Cédric and Lefkowitz, Elliot J and Kuhn, Jens H and Krupovic, Mart and Edwards, Robert A and Brister, J Rodney and Adriaenssens, Evelien M and Sullivan, Matthew B}, + month = dec, + year = {2021}, + pages = {207--215}, + file = {Full Text:/home/acs98/Zotero/storage/HEZCZI23/Dutilh et al. - 2021 - Perspective on taxonomic classification of unculti.pdf:application/pdf;ScienceDirect Snapshot:/home/acs98/Zotero/storage/LTMVZWZS/S1879625721001334.html:text/html}, +} + +@article{rangel-pineros_trees_2021, + title = {From {Trees} to {Clouds}: {PhageClouds} for {Fast} {Comparison} of ∼640,000 {Phage} {Genomic} {Sequences} and {Host}-{Centric} {Visualization} {Using} {Genomic} {Network} {Graphs}}, + volume = {2}, + issn = {2641-6530}, + shorttitle = {From {Trees} to {Clouds}}, + url = {https://www.liebertpub.com/doi/full/10.1089/phage.2021.0008}, + doi = {10.1089/phage.2021.0008}, + abstract = {Background: Fast and computationally efficient strategies are required to explore genomic relationships within an increasingly large and diverse phage sequence space. Here, we present PhageClouds, a novel approach using a graph database of phage genomic sequences and their intergenomic distances to explore the phage genomic sequence space. + +Methods: A total of 640,000 phage genomic sequences were retrieved from a variety of databases and public virome assemblies. Intergenomic distances were calculated with dashing, an alignment-free method suitable for handling massive data sets. These data were used to build a Neo4j® graph database. + +Results: PhageClouds supported the search of related phages among all complete phage genomes from GenBank for a single query phage in just 10 s. Moreover, PhageClouds expanded the number of closely related phage sequences detected for both finished and draft phage genomes, in comparison with searches exclusively targeting phage entries from GenBank. + +Conclusions: PhageClouds is a novel resource that will facilitate the analysis of phage genomic sequences and the characterization of assembled phage genomes.}, + number = {4}, + urldate = {2024-01-22}, + journal = {PHAGE}, + author = {Rangel-Pineros, Guillermo and Millard, Andrew and Michniewski, Slawomir and Scanlan, David and Sirén, Kimmo and Reyes, Alejandro and Petersen, Bent and Clokie, Martha R.J. and Sicheritz-Pontén, Thomas}, + month = dec, + year = {2021}, + note = {Publisher: Mary Ann Liebert, Inc., publishers}, + keywords = {comparative genomics, genomic graph database, phage genomics}, + pages = {194--203}, + file = {Full Text PDF:/home/acs98/Zotero/storage/F24LANZ5/Rangel-Pineros et al. - 2021 - From Trees to Clouds PhageClouds for Fast Compari.pdf:application/pdf}, +} + +@article{varunjikar_comparing_2022, + title = {Comparing novel shotgun {DNA} sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples}, + volume = {131}, + issn = {0956-7135}, + url = {https://www.sciencedirect.com/science/article/pii/S0956713521005557}, + doi = {10.1016/j.foodcont.2021.108417}, + abstract = {Replacement of high-value fish species with cheaper varieties or mislabelling of food unfit for human consumption is a global problem violating both consumers’ rights and safety. For distinguishing fish species in pure samples, DNA approaches are available; however, authentication and quantification of fish species in mixtures remains a challenge. In the present study, a novel high-throughput shotgun DNA sequencing approach applying masked reference libraries was developed and used for authentication and abundance calculations of fish species in mixed samples. Results demonstrate that the analytical protocol presented here can discriminate and predict relative abundances of different fish species in mixed samples with high accuracy. In addition to DNA analyses, shotgun proteomics tools based on direct spectra comparisons were employed on the same mixture. Similar to the DNA approach, the identification of individual fish species and the estimation of their respective relative abundances in a mixed sample also were feasible. Furthermore, the data obtained indicated that DNA sequencing using masked libraries predicted species-composition of the fish mixture with higher specificity, while at a taxonomic family level, relative abundances of the different species in the fish mixture were predicted with slightly higher accuracy using proteomics tools. Taken together, the results demonstrate that both DNA and protein-based approaches presented here can be used to efficiently tackle current challenges in feed and food authentication analyses.}, + urldate = {2024-01-22}, + journal = {Food Control}, + author = {Varunjikar, Madhushri S. and Moreno-Ibarguen, Carlos and Andrade-Martinez, Juan S. and Tung, Hui-Shan and Belghit, Ikram and Palmblad, Magnus and Olsvik, Pål A. and Reyes, Alejandro and Rasinger, Josef D. and Lie, Kai K.}, + month = jan, + year = {2022}, + keywords = {Seafood, Authentication, DNA-Sequencing, Fish, Food fraud, Mislabelling, Spectral library}, + pages = {108417}, + file = {Full Text:/home/acs98/Zotero/storage/GFTCYERD/Varunjikar et al. - 2022 - Comparing novel shotgun DNA sequencing and state-o.pdf:application/pdf;ScienceDirect Snapshot:/home/acs98/Zotero/storage/U7TEP6HM/S0956713521005557.html:text/html}, +} + +@incollection{adriaenssens_taxonomy_2022, + title = {Taxonomy proposal 2021: {Abolish} the order {Caudovirales} and the families {Myoviridae}, {Siphoviridae} and {Podoviridae} ({Caudoviricetes})}, + shorttitle = {Taxonomy proposal 2021}, + booktitle = {{ICTV} {Online}: {International} {Committee} on {Taxonomy} of {Viruses} ({ICTV})}, + publisher = {International Committee on Taxonomy of Viruses (ICTV)}, + author = {Adriaenssens, Evelien and Kropinski, Andrew M. and D, Turner and Krupovic, Mart and Millard, Andrew and Dutilh, Bas E. and Oksanen, Hanna M and Lood, Cedric and Reyes, Alejandro and Moraru, Cristina and Aziz, Ramy K and Yigang, Tong and Barylski, Jakub and Lobocka, Malgorzata and Sarkar, B L and Gillis, Annika and van Zyl, Leonardo J. and Lehman, Susan M and Sullivan, Matthew B. and Wittmann, Johannes and Kushkina, Alla I and Knezevic, Petar and Brister, J. Rodney and Edwards, Rob A and Kurtboke, Ipek and Poranen, Minna and Lavigne, Rob and Shkoporov, Andrey N and Uchiyama, Jumpei and Moreno Switt, Andrea I. and Enault, François}, + year = {2022}, + keywords = {11832 Microbiology and virology}, +} + +@article{clavijo_gut_2022, + title = {The gut microbiota of chickens in a commercial farm treated with a {Salmonella} phage cocktail}, + volume = {12}, + copyright = {2022 The Author(s)}, + issn = {2045-2322}, + url = {https://www.nature.com/articles/s41598-021-04679-6}, + doi = {10.1038/s41598-021-04679-6}, + abstract = {The microbiota in broiler chicken intestines affects the animals’ health, metabolism, and immunity both positively and negatively. Accordingly, it has a significant impact on animal productivity. Phages, host-specific parasites of bacterial cells, are a promising antimicrobial alternative that selectively target pathogens without disturbing the microbiota. The purpose of this study is to further characterize the commensal microbial community at production scale in broiler chickens treated with a Salmonella phage treatment. We evaluated the cecal microbiota of broilers reared in a commercial farming system where a phage cocktail against Salmonella, SalmoFree was supplied to animals. To do so, two field trials were conducted, incorporating three doses of phages in the broilers’ drinking water. Our results showed that the core microbiome (taxa that were present in more than 50\% of samples) contained species that are key to microbiota adaptation in the last stage of the production cycle. Among these, there are some important degraders of complex polysaccharides and producers of short chain fatty acids (SCFA) such as Eisenbergiella and Lachnoclostridium. The phage cocktail did not affect the normal development of the microbiota’s structure. The addition of the phage cocktail resulted in a significant reduction in Campylobacter and an increase in Butyricimonas, Helicobacter and Rikenellaceae, which are common inhabitants in chicken gut with known negative and positive effects on their health and metabolism. Altogether, we consider that these results contribute valuable information to the implementation of large-scale phage therapy technologies.}, + language = {en}, + number = {1}, + urldate = {2024-01-22}, + journal = {Scientific Reports}, + author = {Clavijo, Viviana and Morales, Tatiana and Vives-Flores, Martha Josefina and Reyes Muñoz, Alejandro}, + month = jan, + year = {2022}, + note = {Number: 1 +Publisher: Nature Publishing Group}, + keywords = {Microbiome, Metagenomics, Bacteriophages}, + pages = {991}, + file = {Full Text PDF:/home/acs98/Zotero/storage/7UTKW2VW/Clavijo et al. - 2022 - The gut microbiota of chickens in a commercial far.pdf:application/pdf}, +} + +@article{moore_ten_2021, + title = {Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries}, + volume = {17}, + issn = {1553-7358}, + url = {https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009218}, + doi = {10.1371/journal.pcbi.1009218}, + language = {en}, + number = {8}, + urldate = {2024-01-22}, + journal = {PLOS Computational Biology}, + author = {Moore, Benjamin and Carvajal-López, Patricia and Chauke, Paballo Abel and Cristancho, Marco and Angel, Victoria Dominguez Del and Fernandez-Valverde, Selene L. and Ghouila, Amel and Gopalasingam, Piraveen and Guerfali, Fatma Zahra and Matimba, Alice and Morgan, Sarah L. and Oliveira, Guilherme and Ras, Verena and Reyes, Alejandro and Rivas, Javier De Las and Mulder, Nicola}, + month = aug, + year = {2021}, + note = {Publisher: Public Library of Science}, + keywords = {Human learning, Computer software, Workshops, Bioinformatics, Culture, Instructors, Sustainability science, Low and middle income countries}, + pages = {e1009218}, + file = {Full Text PDF:/home/acs98/Zotero/storage/2T26JLKZ/Moore et al. - 2021 - Ten simple rules for organizing a bioinformatics t.pdf:application/pdf}, +} + +@article{andrade-martinez_computational_2022, + title = {Computational {Tools} for the {Analysis} of {Uncultivated} {Phage} {Genomes}}, + volume = {86}, + url = {https://journals.asm.org/doi/full/10.1128/mmbr.00004-21}, + doi = {10.1128/mmbr.00004-21}, + abstract = {SUMMARY +Over a century of bacteriophage research has uncovered a plethora of fundamental aspects of their biology, ecology, and evolution. Furthermore, the introduction of community-level studies through metagenomics has revealed unprecedented insights on the impact that phages have on a range of ecological and physiological processes. It was not until the introduction of viral metagenomics that we began to grasp the astonishing breadth of genetic diversity encompassed by phage genomes. Novel phage genomes have been reported from a diverse range of biomes at an increasing rate, which has prompted the development of computational tools that support the multilevel characterization of these novel phages based solely on their genome sequences. The impact of these technologies has been so large that, together with MAGs (Metagenomic Assembled Genomes), we now have UViGs (Uncultivated Viral Genomes), which are now officially recognized by the International Committee for the Taxonomy of Viruses (ICTV), and new taxonomic groups can now be created based exclusively on genomic sequence information. Even though the available tools have immensely contributed to our knowledge of phage diversity and ecology, the ongoing surge in software programs makes it challenging to keep up with them and the purpose each one is designed for. Therefore, in this review, we describe a comprehensive set of currently available computational tools designed for the characterization of phage genome sequences, focusing on five specific analyses: (i) assembly and identification of phage and prophage sequences, (ii) phage genome annotation, (iii) phage taxonomic classification, (iv) phage-host interaction analysis, and (v) phage microdiversity.}, + number = {2}, + urldate = {2024-01-22}, + journal = {Microbiology and Molecular Biology Reviews}, + author = {Andrade-Martínez, Juan Sebastián and Camelo Valera, Laura Carolina and Chica Cárdenas, Luis Alberto and Forero-Junco, Laura and López-Leal, Gamaliel and Moreno-Gallego, J. Leonardo and Rangel-Pineros, Guillermo and Reyes, Alejandro}, + month = mar, + year = {2022}, + note = {Publisher: American Society for Microbiology}, + pages = {e00004--21}, + file = {Full Text PDF:/home/acs98/Zotero/storage/2NYN4H9U/Andrade-Martínez et al. - 2022 - Computational Tools for the Analysis of Uncultivat.pdf:application/pdf}, +} + +@article{lopez-leal_mining_2022, + title = {Mining of {Thousands} of {Prokaryotic} {Genomes} {Reveals} {High} {Abundance} of {Prophages} with a {Strictly} {Narrow} {Host} {Range}}, + volume = {7}, + url = {https://journals.asm.org/doi/full/10.1128/msystems.00326-22}, + doi = {10.1128/msystems.00326-22}, + abstract = {Phages and prophages are one of the principal modulators of microbial populations. However, much of their diversity is still poorly understood. Here, we extracted 33,624 prophages from 13,713 complete prokaryotic genomes to explore the prophage diversity and their relationships with their host. Our results reveal that prophages were present in 75\% of the genomes studied. In addition, Enterobacterales were significantly enriched in prophages. We also found that pathogens are a significant reservoir of prophages. Finally, we determined that the prophage relatedness and the range of genomic hosts were delimited by the evolutionary relationships of their hosts. On a broader level, we got insights into the prophage population, identified in thousands of publicly available prokaryotic genomes, by comparing the prophage distribution and relatedness between them and their hosts. +IMPORTANCE Phages and prophages play an essential role in controlling their host populations either by modulating the host abundance or providing them with genes that benefit the host. The constant growth in next-generation sequencing technology has caused the development of powerful computational tools to identify phages and prophages with high precision. Making it possible to explore the prophage populations integrated into host genomes on a large scale. However, it is still a new and under-explored area, and efforts are still required to identify prophage populations to understand their dynamics with their hosts.}, + number = {4}, + urldate = {2024-01-22}, + journal = {mSystems}, + author = {López-Leal, Gamaliel and Camelo-Valera, Laura Carolina and Hurtado-Ramírez, Juan Manuel and Verleyen, Jérôme and Castillo-Ramírez, Santiago and Reyes-Muñoz, Alejandro}, + month = jul, + year = {2022}, + note = {Publisher: American Society for Microbiology}, + pages = {e00326--22}, + file = {Full Text PDF:/home/acs98/Zotero/storage/4LAWNAAI/López-Leal et al. - 2022 - Mining of Thousands of Prokaryotic Genomes Reveals.pdf:application/pdf}, +} + +@article{turner_abolishment_2023, + title = {Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the {ICTV} bacterial viruses subcommittee}, + volume = {168}, + issn = {1432-8798}, + shorttitle = {Abolishment of morphology-based taxa and change to binomial species names}, + url = {https://doi.org/10.1007/s00705-022-05694-2}, + doi = {10.1007/s00705-022-05694-2}, + abstract = {This article summarises the activities of the Bacterial Viruses Subcommittee of the International Committee on Taxonomy of Viruses for the period of March 2021−March 2022. We provide an overview of the new taxa proposed in 2021, approved by the Executive Committee, and ratified by vote in 2022. Significant changes to the taxonomy of bacterial viruses were introduced: the paraphyletic morphological families Podoviridae, Siphoviridae, and Myoviridae as well as the order Caudovirales were abolished, and a binomial system of nomenclature for species was established. In addition, one order, 22 families, 30 subfamilies, 321 genera, and 862 species were newly created, promoted, or moved.}, + language = {en}, + number = {2}, + urldate = {2024-01-22}, + journal = {Archives of Virology}, + author = {Turner, Dann and Shkoporov, Andrey N. and Lood, Cédric and Millard, Andrew D. and Dutilh, Bas E. and Alfenas-Zerbini, Poliane and van Zyl, Leonardo J. and Aziz, Ramy K. and Oksanen, Hanna M. and Poranen, Minna M. and Kropinski, Andrew M. and Barylski, Jakub and Brister, J. Rodney and Chanisvili, Nina and Edwards, Rob A. and Enault, François and Gillis, Annika and Knezevic, Petar and Krupovic, Mart and Kurtböke, Ipek and Kushkina, Alla and Lavigne, Rob and Lehman, Susan and Lobocka, Malgorzata and Moraru, Cristina and Moreno Switt, Andrea and Morozova, Vera and Nakavuma, Jesca and Reyes Muñoz, Alejandro and Rūmnieks, Jānis and Sarkar, BL and Sullivan, Matthew B. and Uchiyama, Jumpei and Wittmann, Johannes and Yigang, Tong and Adriaenssens, Evelien M.}, + month = jan, + year = {2023}, + pages = {74}, + file = {Full Text PDF:/home/acs98/Zotero/storage/3JEIBWW9/Turner et al. - 2023 - Abolishment of morphology-based taxa and change to.pdf:application/pdf}, +} + +@article{simmonds_four_2023, + title = {Four principles to establish a universal virus taxonomy}, + volume = {21}, + issn = {1545-7885}, + url = {https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001922}, + doi = {10.1371/journal.pbio.3001922}, + abstract = {A universal taxonomy of viruses is essential for a comprehensive view of the virus world and for communicating the complicated evolutionary relationships among viruses. However, there are major differences in the conceptualisation and approaches to virus classification and nomenclature among virologists, clinicians, agronomists, and other interested parties. Here, we provide recommendations to guide the construction of a coherent and comprehensive virus taxonomy, based on expert scientific consensus. Firstly, assignments of viruses should be congruent with the best attainable reconstruction of their evolutionary histories, i.e., taxa should be monophyletic. This fundamental principle for classification of viruses is currently included in the International Committee on Taxonomy of Viruses (ICTV) code only for the rank of species. Secondly, phenotypic and ecological properties of viruses may inform, but not override, evolutionary relatedness in the placement of ranks. Thirdly, alternative classifications that consider phenotypic attributes, such as being vector-borne (e.g., “arboviruses”), infecting a certain type of host (e.g., “mycoviruses,” “bacteriophages”) or displaying specific pathogenicity (e.g., “human immunodeficiency viruses”), may serve important clinical and regulatory purposes but often create polyphyletic categories that do not reflect evolutionary relationships. Nevertheless, such classifications ought to be maintained if they serve the needs of specific communities or play a practical clinical or regulatory role. However, they should not be considered or called taxonomies. Finally, while an evolution-based framework enables viruses discovered by metagenomics to be incorporated into the ICTV taxonomy, there are essential requirements for quality control of the sequence data used for these assignments. Combined, these four principles will enable future development and expansion of virus taxonomy as the true evolutionary diversity of viruses becomes apparent.}, + language = {en}, + number = {2}, + urldate = {2024-01-22}, + journal = {PLOS Biology}, + author = {Simmonds, Peter and Adriaenssens, Evelien M. and Zerbini, F. Murilo and Abrescia, Nicola G. A. and Aiewsakun, Pakorn and Alfenas-Zerbini, Poliane and Bao, Yiming and Barylski, Jakub and Drosten, Christian and Duffy, Siobain and Duprex, W. Paul and Dutilh, Bas E. and Elena, Santiago F. and García, Maria Laura and Junglen, Sandra and Katzourakis, Aris and Koonin, Eugene V. and Krupovic, Mart and Kuhn, Jens H. and Lambert, Amy J. and Lefkowitz, Elliot J. and Łobocka, Małgorzata and Lood, Cédric and Mahony, Jennifer and Meier-Kolthoff, Jan P. and Mushegian, Arcady R. and Oksanen, Hanna M. and Poranen, Minna M. and Reyes-Muñoz, Alejandro and Robertson, David L. and Roux, Simon and Rubino, Luisa and Sabanadzovic, Sead and Siddell, Stuart and Skern, Tim and Smith, Donald B. and Sullivan, Matthew B. and Suzuki, Nobuhiro and Turner, Dann and Doorslaer, Koenraad Van and Vandamme, Anne-Mieke and Varsani, Arvind and Vasilakis, Nikos}, + month = feb, + year = {2023}, + note = {Publisher: Public Library of Science}, + keywords = {Evolutionary genetics, Phylogenetics, Taxonomy, Viral evolution, Evolutionary systematics, RNA viruses, Viral genomics, Viral taxonomy}, + pages = {e3001922}, + file = {Full Text PDF:/home/acs98/Zotero/storage/ZZ4TKVT3/Simmonds et al. - 2023 - Four principles to establish a universal virus tax.pdf:application/pdf}, +} + +@article{oliveira_rational_2023, + title = {Rational {Design} of {Profile} {HMMs} for {Sensitive} and {Specific} {Sequence} {Detection} with {Case} {Studies} {Applied} to {Viruses}, {Bacteriophages}, and {Casposons}}, + volume = {15}, + copyright = {http://creativecommons.org/licenses/by/3.0/}, + issn = {1999-4915}, + url = {https://www.mdpi.com/1999-4915/15/2/519}, + doi = {10.3390/v15020519}, + abstract = {Profile hidden Markov models (HMMs) are a powerful way of modeling biological sequence diversity and constitute a very sensitive approach to detecting divergent sequences. Here, we report the development of protocols for the rational design of profile HMMs. These methods were implemented on TABAJARA, a program that can be used to either detect all biological sequences of a group or discriminate specific groups of sequences. By calculating position-specific information scores along a multiple sequence alignment, TABAJARA automatically identifies the most informative sequence motifs and uses them to construct profile HMMs. As a proof-of-principle, we applied TABAJARA to generate profile HMMs for the detection and classification of two viral groups presenting different evolutionary rates: bacteriophages of the Microviridae family and viruses of the Flavivirus genus. We obtained conserved models for the generic detection of any Microviridae or Flavivirus sequence, and profile HMMs that can specifically discriminate Microviridae subfamilies or Flavivirus species. In another application, we constructed Cas1 endonuclease-derived profile HMMs that can discriminate CRISPRs and casposons, two evolutionarily related transposable elements. We believe that the protocols described here, and implemented on TABAJARA, constitute a generic toolbox for generating profile HMMs for the highly sensitive and specific detection of sequence classes.}, + language = {en}, + number = {2}, + urldate = {2024-01-22}, + journal = {Viruses}, + author = {Oliveira, Liliane S. and Reyes, Alejandro and Dutilh, Bas E. and Gruber, Arthur}, + month = feb, + year = {2023}, + note = {Number: 2 +Publisher: Multidisciplinary Digital Publishing Institute}, + keywords = {mutual information theory, profile HMMs, sequence classes, sequence entropy, viral classification, viral detection}, + pages = {519}, + file = {Full Text PDF:/home/acs98/Zotero/storage/B6KPKNBC/Oliveira et al. - 2023 - Rational Design of Profile HMMs for Sensitive and .pdf:application/pdf}, +} + +@article{sutcliffe_bacteriophages_2023, + title = {Bacteriophages playing nice: {Lysogenic} bacteriophage replication stable in the human gut microbiota}, + volume = {26}, + issn = {2589-0042}, + shorttitle = {Bacteriophages playing nice}, + url = {https://www.cell.com/iscience/abstract/S2589-0042(23)00084-6}, + doi = {10.1016/j.isci.2023.106007}, + abstract = {Bacteriophages, viruses specific to bacteria, coexist with their bacterial hosts with limited diversity fluctuations in the guts of healthy individuals where they replicate mostly via lysogenic replication. This favors ‘piggy-back-the-winner’ over ‘kill-the-winner’ dynamics which are driven by lytic bacteriophage replication. Revisiting the deep-viral sequencing data of a healthy individual sampled over 2.4 years, we explore how these dynamics occur. Prophages found in assembled bacterial metagenomes were also found extra-cellularly, as induced phage particles (iPPs), likely derived from prophage activation. These iPPs were diverse and continually present in low abundance, relative to the highly abundant but less diverse lytic phage population. The continuous detection of low levels of iPPs suggests that spontaneous induction regularly occurs in this healthy individual, possibly allowing prophages to maintain their ability to replicate and avoiding degradation and loss from the gut microbiota.}, + language = {English}, + number = {2}, + urldate = {2024-01-22}, + journal = {iScience}, + author = {Sutcliffe, Steven G. and Reyes, Alejandro and Maurice, Corinne F.}, + month = feb, + year = {2023}, + pmid = {36798434}, + note = {Publisher: Elsevier}, + keywords = {Microbiology, Microbiome, Virology}, + file = {Full Text PDF:/home/acs98/Zotero/storage/KRIGZSAQ/Sutcliffe et al. - 2023 - Bacteriophages playing nice Lysogenic bacteriopha.pdf:application/pdf}, +} + +@article{castellanos_genomic_2023, + title = {Genomic and {Evolutionary} {Features} of {Nine} {AHPND} {Positive} {Vibrio} parahaemolyticus {Strains} {Isolated} from {South} {American} {Shrimp} {Farms}}, + volume = {11}, + url = {https://journals.asm.org/doi/full/10.1128/spectrum.04851-22}, + doi = {10.1128/spectrum.04851-22}, + abstract = {Vibrio parahaemolyticus is a bacterial pathogen that becomes lethal to Penaeus shrimps when acquiring the pVA1-type plasmid carrying the PirABvp genes, causing acute hepatopancreatic necrosis disease (AHPND). This disease causes significant losses across the world, with outbreaks reported in Southeast Asia, Mexico, and South America. Virulence level and mortality differences have been reported in isolates from different locations, and whether this phenomenon is caused by plasmid-related elements or genomic-related elements from the bacteria remains unclear. Here, nine genomes of South American AHPND-causing V. parahaemolyticus (VPAHPND) isolates were assembled and analyzed using a comparative genomics approach at (i) whole-genome, (ii) secretion system, and (iii) plasmid level, and then included for a phylogenomic analysis with another 86 strains. Two main results were obtained from our analyses. First, all isolates contained pVA1-type plasmids harboring the toxin coding genes, and with high similarity with the prototypical sequence of Mexican-like origin, while phylogenomic analysis showed some level of heterogeneity with discrete clusters and wide diversity compared to other available genomes. Second, although a high genomic similarity was observed, variation in virulence genes and clusters was observed, which might be relevant in the expression of the disease. Overall, our results suggest that South American pathogenic isolates are derived from various genetic lineages which appear to have acquired the plasmid through horizontal gene transfer. Furthermore, pathogenicity seems to be a multifactorial trait where the degree of virulence could be altered by the presence or variations of several virulence factors.}, + number = {4}, + urldate = {2024-01-22}, + journal = {Microbiology Spectrum}, + author = {Castellanos, Alejandro and Restrepo, Leda and Bajaña, Leandro and Betancourt, Irma and Bayot, Bonny and Reyes, Alejandro}, + month = jun, + year = {2023}, + note = {Publisher: American Society for Microbiology}, + pages = {e04851--22}, + file = {Full Text PDF:/home/acs98/Zotero/storage/K3JEDFM6/Castellanos et al. - 2023 - Genomic and Evolutionary Features of Nine AHPND Po.pdf:application/pdf}, +} + +@article{perez-quintero_comparative_2023, + title = {Comparative {Genomics} {Identifies} {Conserved} and {Variable} {TAL} {Effectors} in {African} {Strains} of the {Cotton} {Pathogen} {Xanthomonas} citri pv. malvacearum}, + volume = {113}, + issn = {0031-949X}, + url = {https://apsjournals.apsnet.org/doi/abs/10.1094/PHYTO-12-22-0477-SC}, + doi = {10.1094/PHYTO-12-22-0477-SC}, + abstract = {Strains of Xanthomonas citri pv. malvacearum cause bacterial blight of cotton, a potentially serious threat to cotton production worldwide, including in sub-Saharan countries. Development of disease symptoms, such as water soaking, has been linked to the activity of a class of type 3 effectors, called transcription activator-like (TAL) effectors, which induce susceptibility genes in the host's cells. To gain further insight into the global diversity of the pathogen, to elucidate their repertoires of TAL effector genes, and to better understand the evolution of these genes in the cotton-pathogenic xanthomonads, we sequenced the genomes of three African strains of X. citri pv. malvacearum using nanopore technology. We show that the cotton-pathogenic pathovar of X. citri is a monophyletic lineage containing at least three distinct genetic subclades, which appear to be mirrored by their repertoires of TAL effectors. We observed an atypical level of TAL effector gene pseudogenization, which might be related to resistance genes that are deployed to control the disease. Our work thus contributes to a better understanding of the conservation and importance of TAL effectors in the interaction with the host plant, which can inform strategies for improving resistance against bacterial blight in cotton.}, + number = {8}, + urldate = {2024-01-22}, + journal = {Phytopathology®}, + author = {Pérez-Quintero, Alvaro L. and Rodriguez-R, Luis M. and Cuesta-Morrondo, Sara and Hakalová, Eliška and Betancurt-Anzola, Daniela and Valera, Laura Carolina Camelo and Cardenas, Luis Alberto Chica and Matiz-Céron, Luisa and Jacobs, Jonathan M. and Roman-Reyna, Veronica and Muñoz, Alejandro Reyes and Giraldo, Adriana Jimena Bernal and Koebnik, Ralf}, + month = aug, + year = {2023}, + note = {Publisher: Scientific Societies}, + keywords = {evolution, bacterial blight, cotton, genome sequencing, phylogenomic analysis, resistance, TAL effector, Xanthomonas}, + pages = {1387--1393}, +} + +@article{rangel-pineros_virify_2023, + title = {{VIRify}: {An} integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden {Markov} models}, + volume = {19}, + issn = {1553-7358}, + shorttitle = {{VIRify}}, + url = {https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011422}, + doi = {10.1371/journal.pcbi.1011422}, + abstract = {The study of viral communities has revealed the enormous diversity and impact these biological entities have on various ecosystems. These observations have sparked widespread interest in developing computational strategies that support the comprehensive characterisation of viral communities based on sequencing data. Here we introduce VIRify, a new computational pipeline designed to provide a user-friendly and accurate functional and taxonomic characterisation of viral communities. VIRify identifies viral contigs and prophages from metagenomic assemblies and annotates them using a collection of viral profile hidden Markov models (HMMs). These include our manually-curated profile HMMs, which serve as specific taxonomic markers for a wide range of prokaryotic and eukaryotic viral taxa and are thus used to reliably classify viral contigs. We tested VIRify on assemblies from two microbial mock communities, a large metagenomics study, and a collection of publicly available viral genomic sequences from the human gut. The results showed that VIRify could identify sequences from both prokaryotic and eukaryotic viruses, and provided taxonomic classifications from the genus to the family rank with an average accuracy of 86.6\%. In addition, VIRify allowed the detection and taxonomic classification of a range of prokaryotic and eukaryotic viruses present in 243 marine metagenomic assemblies. Finally, the use of VIRify led to a large expansion in the number of taxonomically classified human gut viral sequences and the improvement of outdated and shallow taxonomic classifications. Overall, we demonstrate that VIRify is a novel and powerful resource that offers an enhanced capability to detect a broad range of viral contigs and taxonomically classify them.}, + language = {en}, + number = {8}, + urldate = {2024-01-22}, + journal = {PLOS Computational Biology}, + author = {Rangel-Pineros, Guillermo and Almeida, Alexandre and Beracochea, Martin and Sakharova, Ekaterina and Marz, Manja and Muñoz, Alejandro Reyes and Hölzer, Martin and Finn, Robert D.}, + month = aug, + year = {2023}, + note = {Publisher: Public Library of Science}, + keywords = {Metagenomics, Genome annotation, Taxonomy, Bacteriophages, Viral genomics, Viral taxonomy, Eukaryota, Hidden Markov models}, + pages = {e1011422}, + file = {Full Text PDF:/home/acs98/Zotero/storage/EZYD5FCN/Rangel-Pineros et al. - 2023 - VIRify An integrated detection, annotation and ta.pdf:application/pdf}, +} + +@article{adriaenssens_guidelines_2023, + title = {Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification}, + volume = {41}, + copyright = {2023 This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply}, + issn = {1546-1696}, + url = {https://www.nature.com/articles/s41587-023-01844-2}, + doi = {10.1038/s41587-023-01844-2}, + language = {en}, + number = {7}, + urldate = {2024-01-22}, + journal = {Nature Biotechnology}, + author = {Adriaenssens, Evelien M. and Roux, Simon and Brister, J. Rodney and Karsch-Mizrachi, Ilene and Kuhn, Jens H. and Varsani, Arvind and Yigang, Tong and Reyes, Alejandro and Lood, Cédric and Lefkowitz, Elliot J. and Sullivan, Matthew B. and Edwards, Robert A. and Simmonds, Peter and Rubino, Luisa and Sabanadzovic, Sead and Krupovic, Mart and Dutilh, Bas E.}, + month = jul, + year = {2023}, + note = {Number: 7 +Publisher: Nature Publishing Group}, + keywords = {Metagenomics, Genetic databases}, + pages = {898--902}, +} + +@article{villabona_conserved_2023, + title = {Conserved, yet disruption-prone, gut microbiomes in neotropical bumblebees}, + volume = {8}, + url = {https://journals.asm.org/doi/full/10.1128/msphere.00139-23}, + doi = {10.1128/msphere.00139-23}, + abstract = {Bumblebees are important pollinators in natural ecosystems and agriculture, but many species are declining. Temperate-zone bumblebees have host-specific and beneficial gut microbiomes, which may have a role in mediating the effects of stressors. However, there is almost no published information on the gut microbiomes of tropical bumblebees. As temperate and tropical bumblebees encounter different floral resources and environmental conditions, their microbiomes could differ. Here, we characterized the gut microbiomes of four neotropical Bombus species and, for comparison, co-occurring solitary bees (genus Thygater). We collected wild-foraging bees from multiple sites in central Colombia and used 16S rRNA gene sequencing to characterize their gut microbiomes. DNA barcoding and morphology were used to identify bumblebee species. We found that the microbiomes of neotropical bumblebees cluster with those of closely related temperate-zone species, in agreement with a model of bumblebee-symbiont codiversification. There was no evidence of geographic differences in microbiome composition between neotropical and temperate-zone bumblebees. These results suggest that the microbiome was conserved during bumblebee dispersal from North America, despite major shifts in ecology and life history. As previously observed in temperate-zone species, some neotropical bumblebees have highly disrupted microbiomes, in which conserved gut bacterial symbionts are replaced by environmental microbes. In these individuals, the gut microbial profile is more like that of solitary bees than of conspecifics. The gut parasites Nosema and Crithidia are also prevalent and associated with microbiome disruption. Our findings provide insights into the biogeography of bee microbiomes and a foundation for studying bee-microbe-stressor interactions in the neotropics.}, + number = {6}, + urldate = {2024-01-22}, + journal = {mSphere}, + author = {Villabona, Nickole and Moran, Nancy and Hammer, Tobin and Reyes, Alejandro}, + month = oct, + year = {2023}, + note = {Publisher: American Society for Microbiology}, + pages = {e00139--23}, + file = {Full Text PDF:/home/acs98/Zotero/storage/KYJMSRXJ/Villabona et al. - 2023 - Conserved, yet disruption-prone, gut microbiomes i.pdf:application/pdf}, +} \ No newline at end of file diff --git a/_config.yml b/_config.yml index c43325f0..1ed14bfc 100644 --- a/_config.yml +++ b/_config.yml @@ -2,13 +2,13 @@ # Site settings # ----------------------------------------------------------------------------- -title: blank # the website title (if blank, full name will be used instead) -first_name: You -middle_name: R. -last_name: Name -email: you@example.com +title: "BCEM" # the website title (if blank, full name will be used instead) +first_name: "BCEM" +middle_name: +last_name: "@ Uniandes" +email: # a.reyes@uniandes.edu.co keywords: jekyll, jekyll-theme, academic-website, portfolio-website # add your own keywords or leave empty -icon: ⚛️ # the emoji used as the favicon (alternatively, provide image name in /assets/img/) +icon: bcem_logo.png # the emoji used as the favicon (alternatively, provide image name in /assets/img/) url: https://BCEM-UniAndes.github.io # the base hostname & protocol for your site baseurl: # the subpath of your site, e.g. /blog/. Leave blank for root @@ -34,14 +34,14 @@ repo_trophies: # will use title and url fields # Take a look to https://github.com/jekyll/jekyll-feed for more customization -rss_icon: true +rss_icon: false # ----------------------------------------------------------------------------- # Layout # ----------------------------------------------------------------------------- navbar_fixed: true -footer_fixed: true +footer_fixed: false search_enabled: true socials_in_search: true @@ -70,7 +70,7 @@ dblp_url: # your DBLP profile url discord_id: # your discord id (18-digit unique numerical identifier) facebook_id: # your facebook id flickr_id: # your flickr id -github_username: # your GitHub user name +github_username: BCEM-UniAndes # your GitHub user name gitlab_username: # your GitLab user name ieee_id: # your ieeexplore.ieee.org/author/id instagram_id: # your instagram id @@ -87,7 +87,7 @@ pinterest_id: # your pinterest id publons_id: # your ID on Publons quora_username: # your Quora username research_gate_profile: # your profile on ResearchGate -scholar_userid: qc6CJjYAAAAJ # your Google Scholar ID +scholar_userid: # your Google Scholar ID scopus_id: # your profile on Scopus semanticscholar_id: # your Semantic Scholar ID spotify_id: # your spotify id @@ -99,7 +99,7 @@ whatsapp_number: # your WhatsApp number (full phone number in international form wikidata_id: # your wikidata id wikipedia_id: # your wikipedia id (Case sensitive) work_url: # work page URL -x_username: # your X handle +x_username: bcem_uniandes # your X handle youtube_id: # your youtube channel id (youtube.com/@) zotero_username: # your zotero username @@ -136,7 +136,7 @@ related_blog_posts: # Giscus comments (RECOMMENDED) # Follow instructions on https://giscus.app/ to setup for your repo to fill out the information below. giscus: - repo: # / + repo: BCEM-UniAndes/BCEM-UniAndes.github.io # / repo_id: R_kgDOI6hBvA # leave empty or specify your repo_id (see https://giscus.app/) category: Comments # name of the category under which discussions will be created category_id: DIC_kwDOI6hBvM4CYHn3 # leave empty or specify your category_id (see https://giscus.app/) @@ -184,6 +184,9 @@ collections: projects: output: true permalink: /:collection/:title/ + team: + output: true + permalink: /:collection/:title/ announcements: enabled: true @@ -303,8 +306,8 @@ display_categories: ["external-services"] # these categories will be displayed o # ----------------------------------------------------------------------------- scholar: - last_name: [Einstein] - first_name: [Albert, A.] + last_name: [Reyes] + first_name: [Alejandro] style: apa locale: en @@ -363,7 +366,7 @@ max_author_limit: 3 # leave blank to always show all authors more_authors_animation_delay: 10 # more authors are revealed on click using animation; smaller delay means faster animation # Enables publication thumbnails. If disabled, none of the publications will display thumbnails, even if specified in the bib entry. -enable_publication_thumbnails: true +enable_publication_thumbnails: false # ----------------------------------------------------------------------------- # Jekyll Link Attributes @@ -380,11 +383,11 @@ external_links: # Jekyll Polyglot # ----------------------------------------------------------------------------- -languages: ["en-us", "pt-br"] +languages: ["en-us", "es-co"] default_lang: "en-us" exclude_from_localization: ["assets"] lang_from_path: true -country_flag: false # set true for allowing flag symbol in language toggle +country_flag: true # set true for allowing flag symbol in language toggle parallel_localization: false # ----------------------------------------------------------------------------- @@ -632,7 +635,7 @@ jekyll_get_json: - data: resume_en-us json: assets/json/resume_en-us.json # it can also be an url - data: resume_pt-br - json: assets/json/resume_pt-br.json # it can also be an url + json: assets/json/resume_es-co.json # it can also be an url jsonresume: - basics - work diff --git a/_data/en-us/highlights.yml b/_data/en-us/highlights.yml new file mode 100644 index 00000000..95a80856 --- /dev/null +++ b/_data/en-us/highlights.yml @@ -0,0 +1,80 @@ +- ENTRYTYPE: article + image: virify.png + ID: rangel-pineros_virify_2023 + author: "G Rangel-Pineros, A Almeida, M Beracochea, E Sakharova, M Marz, AR Mu\xF1\ + oz, M H\xF6lzer, RD Finn" + doi: 10.1371/journal.pcbi.1011422 + issn: 1553-7358 + journal: PLOS Computational Biology + keywords: Metagenomics, Genome annotation, Taxonomy, Bacteriophages, Eukaryota, + Hidden Markov models, Viral genomics, Viral taxonomy + language: en + month: August + number: '8' + pages: e1011422 + shorttitle: '{VIRify}' + title: 'VIRify: An integrated detection, annotation and taxonomic classification + pipeline using virus-specific protein profile hidden Markov models' + url: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011422 + description: The study introduces VIRify, a computational pipeline for characterizing viral communities based on sequencing data. VIRify accurately identifies viral contigs and prophages, using profile hidden Markov models for taxonomic classification, demonstrating high accuracy in diverse datasets, including microbial mock communities and metagenomic studies. + urldate: '2024-01-22' + volume: '19' + year: 2023 +- ENTRYTYPE: article + image: tools_viromes.png + ID: andrade-martinez_computational_2022 + author: "JS Andrade-Mart\xEDnez, LC Camelo Valera, LA Chica C\xE1rdenas, L Forero-Junco,\ + \ G L\xF3pez-Leal, JL Moreno-Gallego, G Rangel-Pineros, A Reyes" + doi: 10.1128/mmbr.00004-21 + journal: Microbiology and Molecular Biology Reviews + month: March + number: '2' + pages: e00004--21 + title: Computational Tools for the Analysis of Uncultivated Phage Genomes + url: https://journals.asm.org/doi/full/10.1128/mmbr.00004-21 + description: This review delves into the significant advancements in bacteriophage research, highlighting the impact of metagenomics in unveiling the vast genetic diversity of phages, leading to the development of computational tools for analyzing phage genome sequences across five key analyses. + urldate: '2024-01-22' + volume: '86' + year: 2022 +- ENTRYTYPE: article + image: covid.jpg + ID: hufsky_computational_2021 + author: "F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, J\ + \ Baumbach, N Beerenwinkel, C Brandt, ... A Reyes, L Richardson, DL Robertson, S Sadegh, JB Singer, K Theys,\ + \ C Upton, M Welzel, L Williams, M Marz" + doi: 10.1093/bib/bbaa232 + issn: 1477-4054 + journal: Briefings in Bioinformatics + month: March + number: '2' + pages: 642--663 + shorttitle: Computational strategies to combat {COVID}-19 + title: 'Computational strategies to combat COVID-19: useful tools to accelerate + SARS-CoV-2 and coronavirus research' + url: https://doi.org/10.1093/bib/bbaa232 + description: This work explores the emergence of bioinformatics tools tailored for SARS-CoV-2, providing a comprehensive overview of their applications in detecting infections, analyzing sequencing data, tracking the pandemic, studying virus evolution, and developing therapeutic strategies to address the ongoing COVID-19 crisis. + urldate: '2024-01-22' + volume: '22' + year: 2021 +- ENTRYTYPE: article + image: twins.png + ID: moreno-gallego_virome_2019 + author: JL Moreno-Gallego, S Chou, SCD Rienzi, JK Goodrich, TD Spector, JT Bell, + ND Youngblut, I Hewson, A Reyes, RE Ley + doi: 10.1016/j.chom.2019.01.019 + issn: 1931-3128 + journal: Cell Host & Microbe + keywords: human gut microbiome, concordant and discordant monozygotic twins, human + gut virome + language: English + month: February + number: '2' + pages: 261--272.e5 + pmid: '30763537' + title: Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult + Monozygotic Twins + url: https://www.cell.com/cell-host-microbe/abstract/S1931-3128(19)30059-9 + description: The virome remains a relatively unexplored component of the microbiome. Moreno-Gallego and Chou et al. examined the viromes of monozygotic twins to ask how microbiome diversity relates to virome diversity, without host genetic variables. Twin pairs were sorted by high or low microbiome concordance, which revealed a correlated virome relatedness. + urldate: '2024-01-22' + volume: '25' + year: 2019 \ No newline at end of file diff --git a/_data/en-us/strings.yml b/_data/en-us/strings.yml index ea330296..d47c8fa1 100644 --- a/_data/en-us/strings.yml +++ b/_data/en-us/strings.yml @@ -64,8 +64,7 @@ cv: footer_text: > # the ">" symbol means to ignore newlines until "titles:" Powered by Jekyll with multi-language-al-folio theme. Hosted by GitHub Pages. - Photos from Unsplash. -latest_posts: latest posts +latest_posts: Latest posts months: long: january: January @@ -93,7 +92,7 @@ months: october: Oct november: Nov december: Dec -news: news +news: News newsletter: back: Back error: "Oops! Something went wrong, please try again." @@ -142,3 +141,5 @@ search: theme: Theme selected_publications: selected publications site_description: A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. +interests: Interests +started: started \ No newline at end of file diff --git a/_data/pt-br/cv.yml b/_data/es-co/cv.yml similarity index 100% rename from _data/pt-br/cv.yml rename to _data/es-co/cv.yml diff --git a/_data/es-co/highlights.yml b/_data/es-co/highlights.yml new file mode 100644 index 00000000..95a80856 --- /dev/null +++ b/_data/es-co/highlights.yml @@ -0,0 +1,80 @@ +- ENTRYTYPE: article + image: virify.png + ID: rangel-pineros_virify_2023 + author: "G Rangel-Pineros, A Almeida, M Beracochea, E Sakharova, M Marz, AR Mu\xF1\ + oz, M H\xF6lzer, RD Finn" + doi: 10.1371/journal.pcbi.1011422 + issn: 1553-7358 + journal: PLOS Computational Biology + keywords: Metagenomics, Genome annotation, Taxonomy, Bacteriophages, Eukaryota, + Hidden Markov models, Viral genomics, Viral taxonomy + language: en + month: August + number: '8' + pages: e1011422 + shorttitle: '{VIRify}' + title: 'VIRify: An integrated detection, annotation and taxonomic classification + pipeline using virus-specific protein profile hidden Markov models' + url: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011422 + description: The study introduces VIRify, a computational pipeline for characterizing viral communities based on sequencing data. VIRify accurately identifies viral contigs and prophages, using profile hidden Markov models for taxonomic classification, demonstrating high accuracy in diverse datasets, including microbial mock communities and metagenomic studies. + urldate: '2024-01-22' + volume: '19' + year: 2023 +- ENTRYTYPE: article + image: tools_viromes.png + ID: andrade-martinez_computational_2022 + author: "JS Andrade-Mart\xEDnez, LC Camelo Valera, LA Chica C\xE1rdenas, L Forero-Junco,\ + \ G L\xF3pez-Leal, JL Moreno-Gallego, G Rangel-Pineros, A Reyes" + doi: 10.1128/mmbr.00004-21 + journal: Microbiology and Molecular Biology Reviews + month: March + number: '2' + pages: e00004--21 + title: Computational Tools for the Analysis of Uncultivated Phage Genomes + url: https://journals.asm.org/doi/full/10.1128/mmbr.00004-21 + description: This review delves into the significant advancements in bacteriophage research, highlighting the impact of metagenomics in unveiling the vast genetic diversity of phages, leading to the development of computational tools for analyzing phage genome sequences across five key analyses. + urldate: '2024-01-22' + volume: '86' + year: 2022 +- ENTRYTYPE: article + image: covid.jpg + ID: hufsky_computational_2021 + author: "F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, J\ + \ Baumbach, N Beerenwinkel, C Brandt, ... A Reyes, L Richardson, DL Robertson, S Sadegh, JB Singer, K Theys,\ + \ C Upton, M Welzel, L Williams, M Marz" + doi: 10.1093/bib/bbaa232 + issn: 1477-4054 + journal: Briefings in Bioinformatics + month: March + number: '2' + pages: 642--663 + shorttitle: Computational strategies to combat {COVID}-19 + title: 'Computational strategies to combat COVID-19: useful tools to accelerate + SARS-CoV-2 and coronavirus research' + url: https://doi.org/10.1093/bib/bbaa232 + description: This work explores the emergence of bioinformatics tools tailored for SARS-CoV-2, providing a comprehensive overview of their applications in detecting infections, analyzing sequencing data, tracking the pandemic, studying virus evolution, and developing therapeutic strategies to address the ongoing COVID-19 crisis. + urldate: '2024-01-22' + volume: '22' + year: 2021 +- ENTRYTYPE: article + image: twins.png + ID: moreno-gallego_virome_2019 + author: JL Moreno-Gallego, S Chou, SCD Rienzi, JK Goodrich, TD Spector, JT Bell, + ND Youngblut, I Hewson, A Reyes, RE Ley + doi: 10.1016/j.chom.2019.01.019 + issn: 1931-3128 + journal: Cell Host & Microbe + keywords: human gut microbiome, concordant and discordant monozygotic twins, human + gut virome + language: English + month: February + number: '2' + pages: 261--272.e5 + pmid: '30763537' + title: Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult + Monozygotic Twins + url: https://www.cell.com/cell-host-microbe/abstract/S1931-3128(19)30059-9 + description: The virome remains a relatively unexplored component of the microbiome. Moreno-Gallego and Chou et al. examined the viromes of monozygotic twins to ask how microbiome diversity relates to virome diversity, without host genetic variables. Twin pairs were sorted by high or low microbiome concordance, which revealed a correlated virome relatedness. + urldate: '2024-01-22' + volume: '25' + year: 2019 \ No newline at end of file diff --git a/_data/es-co/strings.yml b/_data/es-co/strings.yml new file mode 100644 index 00000000..1933794b --- /dev/null +++ b/_data/es-co/strings.yml @@ -0,0 +1,145 @@ +archive_category: archivo de entradas de esta categoría +archive_tag: un archivo de entradas con esta etiqueta +archive_year: un archivo de entradas de este año +blog: + navigation_title: blog +categories: + fun: diversión + work: trabajo +citation: + bibtex: "o como cita en BibTeX:" + introduction: "Si le ha resultado útil, por favor, cite cómo:" +contact_note: Incluso puede añadir una pequeña nota sobre cuál de ellas es la mejor forma de ponerse en contacto con usted. +cv: + address: Dirección + area: Área + awarder: Premiado por + awards: Premios + basics: Información general + certificates: Certificados + city: Ciudad + countryCode: Código del país + courses: Cursos + date: Fecha + education: Educación + email: Email + endDate: Fecha de término + fluency: Fluidez + highlights: Destacados + image: Imagen + institution: Institución + interests: Intereses + issuer: Emisor + keywords: Palabras clave + label: Título + language: Idioma + languages: Idiomas + level: Nivel + location: Localización + name: Nombre + network: Red + organization: Organización + phone: Telefono + position: Posición + postalCode: Código postal + profiles: Perfiles + projects: Proyetos + publications: Publicaciones + publisher: Editor + reference: Referencia + references: Referencias + region: Región + releaseDate: fecha de lanzamiento + score: Pontuación + skills: Habilidades + startDate: Fecha de inicio + studyType: Tipo de estudo + summary: Resumen + table_of_contents: Tabla de Contenidos + title: Título + url: Url + username: Usuário + volunteer: Voluntario + work: Trabajo +footer_text: > # the ">" symbol means to ignore newlines until "titles:" + Desarrollado en Jekyll con el tema multi-language-al-folio. + Hospedado por GitHub Pages. +latest_posts: Últimas entradas +months: + long: + january: Enero + february: Febrero + march: Marzo + april: Abril + may: Mayo + june: Junio + july: Julio + august: Agosto + september: Septiembre + october: Octubre + november: Noviembre + december: Diciembre + short: + january: Jan + february: Feb + march: Mar + april: Abr + may: May + june: Jun + july: Jul + august: Ago + september: Sep + october: Oct + november: Nov + december: Dic +news: Noticias +newsletter: + back: Volver + error: "¡Uy! Algo salió mal, por favor inténtelo de nuevo." + subscribe: inscríbete + subscribed: "Se ha suscrito correctamente al boletín." + subscribe_to_receive: "Suscríbase para recibir notificaciones sobre futuros artículos:" + too_many_signups: "Muchos registros, por favor inténtelo de nuevo pronto" + wait: "Por favor, espere..." +no_news: No hay noticias por el momento... +pagination: + newer: Recientes + older: Antiguas + page: página +post: + created_in: Creado en + created_by: por + last_updated: última actualización en +references: Referencias +related_posts: + description: "He aquí algunos artículos relacionados que quizá le interese leer:" + title: ¿Le ha gustado leer este artículo? +search: + dark_theme: + description: Cambiar el tema del sitio a oscuro + title: Cambiar el tema a oscuro + dropdown: Otras opciones + email: Enviar un email + footer: + close: para cerrae + navigate: para navegar + parent: retroceder un nivel + select: para seleccionar + languages: Idiomas + light_theme: + description: Cambiar el tema del sitio a claro + title: Cambiar el tema a claro + navigation: Menú de navegación + news: Noticias + placeholder: Escriba para iniciar la búsqueda + posts: Entradas + projects: Proyectos + socials: Redes sociales + system_theme: + description: Cambiar el tema del sitio al predeterminado del sistema + title: Utiliza el tema por defecto del sistema + theme: Tema +selected_publications: Publicaciones Seleccionadas +site_description: Un tema sencillo para académicos. Basado en el diseño de [*folio](https://github.com/bogoli/-folio). +interests: Intereses +started: desde \ No newline at end of file diff --git a/_data/pictures_gal.yml b/_data/pictures_gal.yml new file mode 100644 index 00000000..af7484ad --- /dev/null +++ b/_data/pictures_gal.yml @@ -0,0 +1,40 @@ +- title: pic1 + image: IMG-20191004-WA0018.jpg +- title: pic1 + image: IMG-20191004-WA0029.jpg +- title: pic1 + image: IMG-20191202-WA0092.jpg +- title: pic1 + image: IMG-20201211-WA0018.jpg +- title: pic1 + image: IMG-20201211-WA0022.jpg +- title: pic1 + image: IMG-20201212-WA0002.jpg +- title: pic1 + image: IMG-20211217-WA0017.jpg +- title: pic1 + image: IMG-20220331-WA0020.jpg +- title: pic1 + image: IMG-20220617-WA0010.jpg +- title: pic1 + image: IMG-20221007-WA0030.jpg +- title: pic1 + image: IMG-20221007-WA0033.jpg +- title: pic1 + image: IMG-20221007-WA0035.jpg +- title: pic1 + image: IMG-20230321-WA0057.jpg +- title: pic1 + image: IMG-20230325-WA0008.jpg +- title: pic1 + image: IMG-20230511-WA0010.jpg +- title: pic1 + image: IMG-20230608-WA0010.jpg +- title: pic1 + image: IMG-20230608-WA0014.jpg +- title: pic1 + image: IMG-20230608-WA0016.jpg +- title: pics1 + image: IMG-20231206-WA0004.jpg +- title: pics1 + image: IMG-20231214-WA0019.jpg \ No newline at end of file diff --git a/_data/pictures_gens.yml b/_data/pictures_gens.yml new file mode 100644 index 00000000..9a8b4b54 --- /dev/null +++ b/_data/pictures_gens.yml @@ -0,0 +1,27 @@ +- title: pic1_description + image: 2014.jpg + year: 2014 +- title: pic2_description + image: 2015.jpg + year: 2015 +- title: pic3_description + image: 2016.jpg + year: 2016 +- title: pic4_description + image: 2017.jpg + year: 2017 +- title: pic5_description + image: 2018.jpg + year: 2018 +- title: pic6_description + image: 2019.jpg + year: 2019 +- title: pic7_description + image: 2022.jpg + year: 2022 +- title: pic8_description + image: 2023.jpg + year: 2023 +- title: pic9_description + image: 2024.jpg + year: 2024 \ No newline at end of file diff --git a/_data/pt-br/strings.yml b/_data/pt-br/strings.yml deleted file mode 100644 index baa8b4a6..00000000 --- a/_data/pt-br/strings.yml +++ /dev/null @@ -1,144 +0,0 @@ -archive_category: um arquivo de postagens desta categoria -archive_tag: um arquivo de postagens com este marcador -archive_year: um arquivo de postagens deste ano -blog: - navigation_title: blog -categories: - fun: diversão - work: trabalho -citation: - bibtex: "ou como uma citação em BibTeX:" - introduction: "Se você achou isso útil, por favor cite como:" -contact_note: Você pode até adicionar uma pequena observação sobre qual dessas é a melhor maneira de entrar em contato com você. -cv: - address: Endereço - area: Área - awarder: Premiado por - awards: Prêmios - basics: Informações gerais - certificates: Certificados - city: Cidade - countryCode: Código do país - courses: Cursos - date: Data - education: Educação - email: Email - endDate: Data de término - fluency: Fluência - highlights: Destaques - image: Imagem - institution: Instituição - interests: Interesses - issuer: Emissor - keywords: Palavras chave - label: Título - language: Idioma - languages: Idiomas - level: Nível - location: Localização - name: Nome - network: Rede - organization: Organização - phone: Telefone - position: Posição - postalCode: Código postal - profiles: Perfis - projects: Projetos - publications: Publicações - publisher: Editora - reference: Referência - references: Referências - region: Região - releaseDate: Data de lançamento - score: Pontuação - skills: Habilidades - startDate: Data de início - studyType: Tipo de estudo - summary: Resumo - table_of_contents: Tópicos - title: Título - url: Url - username: Usuário - volunteer: Voluntário - work: Trabalho -footer_text: > # the ">" symbol means to ignore newlines until "titles:" - Desenvolvido em Jekyll com o tema multi-language-al-folio. - Hospedado por GitHub Pages. - Fotos do Unsplash. -latest_posts: últimas postagens -months: - long: - january: Janeiro - february: Fevereiro - march: Março - april: Abril - may: Maio - june: Junho - july: Julho - august: Agosto - september: Setembro - october: Outubro - november: Novembro - december: Dezembro - short: - january: Jan - february: Fev - march: Mar - april: Abr - may: Mai - june: Jun - july: Jul - august: Ago - september: Set - october: Out - november: Nov - december: Dez -news: novidades -newsletter: - back: Voltar - error: "Oops! Algo deu errado, por favor tente novamente." - subscribe: inscrever-se - subscribed: "Você se inscreveu com sucesso na newsletter." - subscribe_to_receive: "Inscreva-se para ser notificado de futuros artigos:" - too_many_signups: "Muitas inscrições, por favor tente novamente em breve" - wait: "Por favor, aguarde..." -no_news: Nenhuma novidade no momento... -pagination: - newer: Recentes - older: Antigas - page: página -post: - created_in: Criado em - created_by: por - last_updated: última atualização em -references: Referências -related_posts: - description: "Aqui estão alguns artigos relacionados que você pode gostar de ler:" - title: Gostou de Ler este Artigo? -search: - dark_theme: - description: Muda o tema do site para escuro - title: Muda o tema para escuro - dropdown: Outras opções - email: Enviar um email - footer: - close: para fechar - navigate: para navegar - parent: voltar um nível - select: para selecionar - languages: Idiomas - light_theme: - description: Muda o tema do site para claro - title: Muda o tema para claro - navigation: Menu de navegação - news: Novidades - placeholder: Digite para iniciar a busca - posts: Postagens - projects: Projetos - socials: Redes sociais - system_theme: - description: Muda o tema do site para o padrão do sistema - title: Usa o tema padrão do sistema - theme: Tema -selected_publications: publicações selecionadas -site_description: Um tema simples para acadêmicos. Baseado no design do [*folio](https://github.com/bogoli/-folio). diff --git a/_includes/former_team_member.html b/_includes/former_team_member.html new file mode 100644 index 00000000..7cfde2db --- /dev/null +++ b/_includes/former_team_member.html @@ -0,0 +1,70 @@ + + +
+

+ {% if include.member.website != nil %} + {{ include.member.name }} {% if include.member.country != "col" %}{% endif %} + {% else %} + {{ include.member.name }} {% if include.member.country != "co" %}{% endif %} + {% endif %} + {% if include.member.scholarusername %} + - + + + {% endif %} + {% if include.member.resgateusername %} + - + + + {% endif %} + {% if include.member.mendeleyusername %} + - + + + {% endif %} + {% if include.member.orcidusername %} + - + + + {% endif %} + {% if include.member.publonsusername %} + - + + + {% endif %} + {% if include.member.linkedinusername %} + - + + + {% endif %} + {% if include.member.twitterusername %} + - + + + {% endif %} + {% if include.member.githubusername %} + - + + + {% endif %} + {% if include.member.spotifyusername %} + - + + + {% endif %} + {% if include.member.stravausername %} + - + + + {% endif %} +

+

+ {{ include.member.position }} {% if include.member.started == include.member.ended %} ({{ include.member.started }}) {% else %} ({{ include.member.started }}-{{ include.member.ended }}) {% endif %} +

+

+ {% if include.member.position_after %} + → {{ include.member.position_after }} @ {{ include.member.affiliation_after }} + {% endif %} +

+
+ diff --git a/_includes/header.liquid b/_includes/header.liquid index 25753bc8..4b0144e7 100644 --- a/_includes/header.liquid +++ b/_includes/header.liquid @@ -4,7 +4,7 @@
{% if page.permalink != '/' %} - {% if site.title == 'blank' %} + {% if site.title == nil %} {% if site.first_name %} {{- site.first_name -}} @@ -17,7 +17,18 @@ {{- site.last_name -}} {% endif %} {% else %} - {{- site.title -}} + + {% if site.first_name %} + + {{- site.first_name -}} + + {% endif %} + {% if site.middle_name %} + {{- site.middle_name -}} + {% endif %} + {% if site.last_name %} + {{- site.last_name -}} + {% endif %} {% endif %} {% elsif site.enable_navbar_social %} @@ -47,14 +58,14 @@ {% endfor %} -
  • + {% assign sorted_pages = site.pages | sort: 'nav_order' %} @@ -108,17 +119,9 @@ {% endif %} {% endif %} {% endfor %} - {% if site.search_enabled %} - -
  • - -
    • - {% endif %} {% if site.languages.size >= 2 %} - {% if site.languages.size == 2 %} + {% if site.languages.size == 3 %} {% if site.active_lang == site.languages.first %} {% assign other_language = site.languages.last %} {% else %} @@ -155,7 +158,7 @@ aria-expanded="false" > {% if site.country_flag %} - + {{- site.active_lang | split: "-" | first | upcase }} {% else %} {{- site.active_lang | upcase }} {%- endif -%} @@ -173,7 +176,7 @@ {% if l == site.default_lang %} {% if site.country_flag %} - + {{- l | split: "-" | first | upcase }} {% else %} {{ l | upcase }} {%- endif -%} @@ -181,7 +184,7 @@ {% else %} {% if site.country_flag %} - + {{- l | split: "-" | first | upcase }} {% else %} {{ l | upcase }} {%- endif -%} @@ -194,8 +197,8 @@ {% endif %} {% endif %} + {% if site.enable_darkmode %} -
    • {% endif %} + + {% if site.search_enabled %} +
  • + +
    • + {% endif %}
    + {% if site.enable_progressbar %} -
    diff --git a/_includes/team_member.html b/_includes/team_member.html new file mode 100644 index 00000000..aee4e987 --- /dev/null +++ b/_includes/team_member.html @@ -0,0 +1,55 @@ + + +{% assign lang = site.active_lang %} +
    +
    + +
    + + {% if include.member.website != nil %} +

    {{ include.member.name }} {% if include.member.country != "co" %}{% endif %}

    + {% else %} +

    {{ include.member.name }} {% if include.member.country != "co" %}{% endif %}

    + {% endif %} +

    + + {% if include.member.cv %} - {% endif %} + {% if include.member.scholarusername %} - {% endif %} + {% if include.member.resgateusername %} - {% endif %} + {% if include.member.mendeleyusername %} - {% endif %} + {% if include.member.orcidusername %} - {% endif %} + {% if include.member.publonsusername %} - {% endif %} + {% if include.member.linkedinusername %} - {% endif %} + {% if include.member.twitterusername %} - {% endif %} + {% if include.member.githubusername %} - {% endif %} + {% if include.member.spotifyusername %} - {% endif %} + {% if include.member.stravausername %} - {% endif %} +

    +

    + {{ include.member.position }}{% if include.member.affiliation != nil %}, {{ include.member.affiliation }}{% endif %} ({{ site.data[lang].strings.started }} {{ include.member.started }}) +

    +

    + {% if include.member.education4 != nil %} + • {{ include.member.education1 }} +
    • {{ include.member.education2 }} +
    • {{ include.member.education3 }} +
    • {{ include.member.education4 }} + {% elsif include.member.education3 != nil %} + • {{ include.member.education1 }} +
    • {{ include.member.education2 }} +
    • {{ include.member.education3 }} + {% elsif include.member.education2 != nil %} + • {{ include.member.education1 }} +
    • {{ include.member.education2 }} + {% elsif include.member.education1 != nil %} + • {{ include.member.education1 }} + {% endif %} +

    + {% if include.member.interests != nil %} +

    + {{ site.data[lang].strings.interests }}: {{ include.member.interests }} +

    + {% endif %} +
    + + \ No newline at end of file diff --git a/_layouts/about.liquid b/_layouts/about.liquid index ba5d7df6..84bd2c0d 100644 --- a/_layouts/about.liquid +++ b/_layouts/about.liquid @@ -4,11 +4,13 @@ layout: default

    - {% if site.title == 'blank' %} + {% if site.title == nil %} {{ site.first_name }} {{ site.middle_name }} {{ site.last_name }} {% else %} - {{ site.title }} + + {{ site.first_name }} {{ site.middle_name }} + {{ site.last_name }} {% endif %}

    {{ page.subtitle }}

    @@ -20,9 +22,9 @@ layout: default {% if page.profile.image %} {% assign profile_image_path = page.profile.image | prepend: 'assets/img/' %} {% if page.profile.image_circular %} - {% assign profile_image_class = 'img-fluid z-depth-1 rounded-circle' %} + {% assign profile_image_class = 'img-fluid rounded-circle' %} {% else %} - {% assign profile_image_class = 'img-fluid z-depth-1 rounded' %} + {% assign profile_image_class = 'img-fluid rounded' %} {% endif %} {% capture sizes %}(min-width: {{ site.max_width }}) {{ site.max_width | minus: 30 | times: 0.3}}px, (min-width: 576px) 30vw, 95vw"{% endcapture %} @@ -37,7 +39,7 @@ layout: default
    {% endif %} -
    {{ content }}
    +
    {{ content }}
    {% if page.news and site.announcements.enabled %} diff --git a/_layouts/bib.liquid b/_layouts/bib.liquid index 12e8b777..e206a921 100644 --- a/_layouts/bib.liquid +++ b/_layouts/bib.liquid @@ -47,7 +47,7 @@
    -
    {{ entry.title }}
    +
    {{ entry.title }}
    {% assign author_array_size = entry.author_array | size %} @@ -149,7 +149,7 @@ {% assign proceedings = 'inproceedings,incollection' | split: ',' %} {% assign thesis = 'thesis,mastersthesis,phdthesis' | split: ',' %} {% if entry.type == 'article' %} - {% capture entrytype %}{{ entry.journal }}{% endcapture %} + {% capture entrytype %}{{ entry.journal }}{% if entry.volume != nil %} {{entry.volume}}{% endif %}{% if entry.number != nil %} ({{entry.number}}){% endif %}{% if entry.pages != nil %}, {{entry.pages}}{% endif %}{% endcapture %} {% elsif proceedings contains entry.type %} {% capture entrytype %}In {{ entry.booktitle }} {% endcapture %} {% elsif thesis contains entry.type %} @@ -174,13 +174,14 @@ {% include hook/bib.liquid %} {% endif %} {% assign entrytype_text = entrytype | strip_html | strip %} - {% capture periodical %}{{ entrytype }}{% if entrytype_text != "" and entryyear != "" %}, {% endif %}{{ entrymonth }}{{ entryyear }}{% endcapture %} + {% capture periodical %}{{ entrytype }}{% if entrytype_text != "" and entryyear != "" %} - {% endif %}{{ entrymonth }}{{ entryyear }}{% endcapture %}
    {{ periodical | strip }}
    -
    + +
    diff --git a/_layouts/page.liquid b/_layouts/page.liquid index e2504480..34cc2d23 100644 --- a/_layouts/page.liquid +++ b/_layouts/page.liquid @@ -7,7 +7,7 @@ layout: default

    {{ page.description }}

    -
    +
    {{ content }}
    diff --git a/_news/pt-br/announcement_1.md b/_news/es-co/announcement_1.md similarity index 100% rename from _news/pt-br/announcement_1.md rename to _news/es-co/announcement_1.md diff --git a/_news/pt-br/announcement_2.md b/_news/es-co/announcement_2.md similarity index 100% rename from _news/pt-br/announcement_2.md rename to _news/es-co/announcement_2.md diff --git a/_news/pt-br/announcement_3.md b/_news/es-co/announcement_3.md similarity index 100% rename from _news/pt-br/announcement_3.md rename to _news/es-co/announcement_3.md diff --git a/_pages/en-us/about.md b/_pages/en-us/about.md index f8adf613..ebe076ca 100644 --- a/_pages/en-us/about.md +++ b/_pages/en-us/about.md @@ -1,27 +1,36 @@ --- page_id: about layout: about -title: about +title: Home permalink: / -subtitle: Affiliations. Address. Contacts. Moto. Etc. +subtitle: Biological Sciences Department, Universidad de los Andes profile: align: right - image: prof_pic.jpg + image: bcem_logo_nt.png image_circular: false # crops the image to make it circular - more_info: > -

    555 your office number

    -

    123 your address street

    -

    Your City, State 12345

    + more_info: news: true # includes a list of news items latest_posts: true # includes a list of the newest posts -selected_papers: true # includes a list of papers marked as "selected={true}" +selected_papers: false # includes a list of papers marked as "selected={true}" social: true # includes social icons at the bottom of the page --- -Write your biography here. Tell the world about yourself. Link to your favorite [subreddit](http://reddit.com). You can put a picture in, too. The code is already in, just name your picture `prof_pic.jpg` and put it in the `img/` folder. +Welcome to the homepage of the Research Group on Computational Biology and Microbial Ecology (BCEM) at Uniandes. [We]({{ site.url }}{{ site.baseurl }}/team) are a multidisciplinary group involved in the development of computational biology. We work in diverse research areas such as microbial ecology, genomics, population genetics and systems biology. -Put your address / P.O. box / other info right below your picture. You can also disable any of these elements by editing `profile` property of the YAML header of your `_pages/about.md`. Edit `_bibliography/papers.bib` and Jekyll will render your [publications page](/multi-language-al-folio/publications/) automatically. +The BCEM is a research group based on principles of excellence and scientific rigor, ensuring high-quality scientific research. Our members are characterized by their passion and scientific curiosity, as well as by their high level of commitment and discipline. As researchers we are based on mutual respect, based on a principle of empathy and solidarity with others, recognizing each other in our uniqueness, that is, in the difference, implying respect and the search for equity.
    -Link to your social media connections, too. This theme is set up to use [Font Awesome icons](https://fontawesome.com/) and [Academicons](https://jpswalsh.github.io/academicons/), like the ones below. Add your Facebook, Twitter, LinkedIn, Google Scholar, or just disable all of them. +[Here]({{ site.url }}{{ site.baseurl }}/research) is a more detailed description of our research interests. + +
    +
    + +
    +
    + +
    + + + +
    diff --git a/_pages/en-us/blog.md b/_pages/en-us/blog.md index 30017cd9..56ce0ca6 100644 --- a/_pages/en-us/blog.md +++ b/_pages/en-us/blog.md @@ -2,11 +2,11 @@ page_id: blog layout: default permalink: /blog/ -title: blog +title: Blog blog_name: al-folio in english description: a simple whitespace theme for academics -nav: true -nav_order: 1 +nav: false +nav_order: pagination: enabled: true collection: posts diff --git a/_pages/en-us/contact.md b/_pages/en-us/contact.md new file mode 100644 index 00000000..dcfa904f --- /dev/null +++ b/_pages/en-us/contact.md @@ -0,0 +1,26 @@ +--- +page_id: contact +layout: page +permalink: /contact/ +title: Contact +description: +nav: true +nav_order: 6 +--- + +Universidad de los Andes
    + Cra 1 Nº 18A - 10, Bogotá, Colombia
    + Building Hermes (Ch), Office 201
    + + a.reyes[at]uniandes.edu.co + + +(601) 339 49 99 + + +
    + +
    + +
    + +
    diff --git a/_pages/en-us/cv.md b/_pages/en-us/cv.md index 55ea7915..470e437a 100644 --- a/_pages/en-us/cv.md +++ b/_pages/en-us/cv.md @@ -3,8 +3,8 @@ page_id: cv layout: cv permalink: /cv/ title: cv -nav: true -nav_order: 5 +nav: false +nav_order: cv_pdf: example_pdf.pdf description: This is a description of the page. You can modify it in '_pages/cv.md'. You can also change or remove the top pdf download button. toc: diff --git a/_pages/en-us/dropdown.md b/_pages/en-us/dropdown.md index 08ad0f44..720b3af4 100644 --- a/_pages/en-us/dropdown.md +++ b/_pages/en-us/dropdown.md @@ -2,8 +2,8 @@ id: dropdown layout: page title: submenus -nav: true -nav_order: 8 +nav: false +nav_order: dropdown: true children: - title: publications diff --git a/_pages/en-us/gallery.md b/_pages/en-us/gallery.md new file mode 100644 index 00000000..5f2625a6 --- /dev/null +++ b/_pages/en-us/gallery.md @@ -0,0 +1,36 @@ +--- +page_id: gallery +layout: page +permalink: /gallery/ +title: Gallery +description: +nav: false +nav_order: +--- + +
    + {% assign number_printed = 0 %} + {% for pic in site.data.pictures_gal %} + + {% assign even_odd = number_printed | modulo: 2 %} + +
    +
    + {{ pic.alt_text }} + +
    +
    + + {% assign number_printed = number_printed | plus: 1 %} + + {% if even_odd == 1 or forloop.last %} +
    +
    + {% endif %} + + {% endfor %} +
    + +

     

    + + diff --git a/_pages/en-us/generations.md b/_pages/en-us/generations.md new file mode 100644 index 00000000..288ffa3c --- /dev/null +++ b/_pages/en-us/generations.md @@ -0,0 +1,42 @@ +--- +page_id: generations +layout: page +permalink: /generations/ +title: BCEM along the years +description: +nav: false +nav_order: +--- + + + +

     

    \ No newline at end of file diff --git a/_pages/en-us/news.md b/_pages/en-us/news.md index 07a9c3e9..e65250e3 100644 --- a/_pages/en-us/news.md +++ b/_pages/en-us/news.md @@ -1,7 +1,7 @@ --- page_id: news layout: page -title: news +title: News permalink: /news/ --- diff --git a/_pages/en-us/pictures.md b/_pages/en-us/pictures.md new file mode 100644 index 00000000..826a23e3 --- /dev/null +++ b/_pages/en-us/pictures.md @@ -0,0 +1,14 @@ +--- +id: pics +layout: page +title: Pics +nav: true +nav_order: 7 +dropdown: true +children: + - title: BCEM along the years + permalink: /generations/ + - title: divider + - title: Gallery + permalink: /gallery/ +--- diff --git a/_pages/en-us/profiles.md b/_pages/en-us/profiles.md index 057ec019..a6005d54 100644 --- a/_pages/en-us/profiles.md +++ b/_pages/en-us/profiles.md @@ -4,8 +4,8 @@ layout: profiles permalink: /people/ title: people description: members of the lab or group -nav: true -nav_order: 7 +nav: false +nav_order: profiles: # if you want to include more than one profile, just replicate the following block diff --git a/_pages/en-us/projects.md b/_pages/en-us/projects.md index f8f98ccb..3901405b 100644 --- a/_pages/en-us/projects.md +++ b/_pages/en-us/projects.md @@ -4,8 +4,8 @@ layout: page title: projects permalink: /projects/ description: A growing collection of your cool projects. -nav: true -nav_order: 3 +nav: false +nav_order: display_categories: [work, fun] horizontal: false --- diff --git a/_pages/en-us/publications.md b/_pages/en-us/publications.md index ee6c659f..048d6fde 100644 --- a/_pages/en-us/publications.md +++ b/_pages/en-us/publications.md @@ -2,10 +2,10 @@ page_id: publications layout: page permalink: /publications/ -title: publications -description: publications by categories in reversed chronological order. generated by jekyll-scholar. +title: Publications +description: nav: true -nav_order: 2 +nav_order: 4 --- diff --git a/_pages/en-us/repositories.md b/_pages/en-us/repositories.md index c6976ec4..b0b0f3a6 100644 --- a/_pages/en-us/repositories.md +++ b/_pages/en-us/repositories.md @@ -4,8 +4,8 @@ layout: page permalink: /repositories/ title: repositories description: Edit the `_data/repositories.yml` and change the `github_users` and `github_repos` lists to include your own GitHub profile and repositories. -nav: true -nav_order: 4 +nav: false +nav_order: --- ## GitHub Users diff --git a/_pages/en-us/research.md b/_pages/en-us/research.md new file mode 100644 index 00000000..5ea0e817 --- /dev/null +++ b/_pages/en-us/research.md @@ -0,0 +1,46 @@ +--- +page_id: research +layout: page +permalink: /research/ +title: Research +description: +nav: true +nav_order: 2 +--- + + +We work in diverse research areas such as microbial ecology, genomics, population genetics and systems biology. + +--- + +#### **Microbial Ecology** +![]({{ site.url }}{{ site.baseurl }}/assets/img/research/MicEco.png){: style="width: 350px; float: left; margin: 0px 10px"} + +Ecology and microbiology seemed to be concepts that had nothing in common for several decades, and the field of microbial ecology took a long time to emerge and consolidate. This was largely due to the lack of tools and technologies to explore this field. However, with the development of technologies, algorithms and methodologies that allow the simultaneous study of all (micro)organisms present in an environment at a specific time, in the last decade it has been possible to study microorganisms and their interactions together in what is now known as meta-omics sciences. + +Initially metagenomics allowed us to access the composition and genetic potential of environments, later transcriptomics allowed us to approach gene expression in those environments and now with proteomics and metabolomics we can begin to understand the different interactions between members of a community. However, all these techniques have developed quite rapidly and the technologies and algorithms for the analysis and interpretation of these data have evolved more in response to the particular needs of research groups than in a rational thinking to optimize the use of data and resources, taking advantage of the advances in computing capabilities that are currently available. + +[[Frontiers in Microbiology, 2022](https://www.frontiersin.org/articles/10.3389/fmicb.2022.813002/full)] +[[Microbiome, 2021](https://link.springer.com/article/10.1186/s40168-021-01043-8)] +[[Nutrients, 2020](https://www.mdpi.com/2072-6643/12/10/2938)] + +--- + +#### **Ecological virus-host relationships in the human gut** +![]({{ site.url }}{{ site.baseurl }}/assets/img/research/Nature_Cover_2010.jpg){: style="width: 300px; float: right; margin: 0px 10px"} + +The human gut microbiota is the set of all organisms living in the human gastrointestinal tract. This amazingly diverse community is composed of the 3 domains of life and their respective viruses. Since the emergence of molecular techniques for the study of microbial communities, the gut microbiota has been a major target of study and large consortia such as the HMP in the USA and MetaHIT in Europe have devoted a great deal of resources to characterize these communities. However, the major effort to study these communities has been made on their prokaryotic component ignoring for the most part the viral component. In fact, this component may be greater in number and diversity than the bacterial component itself. Viruses are present in any environment where a potential host is found and their predation dynamics, lytic or lysogenic cycles can have important consequences on the dynamics and behavior of the community in general. The study and characterization of the relationships between viruses (with bacterial or eukaryotic hosts) and their diverse implications in the community and therefore their consequences in the health of the human host, are an important objective of the group's research. + +[[iScience, 2023](https://www.cell.com/iscience/fulltext/S2589-0042(23)00084-6?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2589004223000846%3Fshowall%3Dtrue)] +[[Scientific Reports, 2022](https://www.nature.com/articles/s41598-021-04679-6)] + +--- + +#### **Characterization of virome and viral genomes** +![]({{ site.url }}{{ site.baseurl }}/assets/img/research/Virus_2.png){: style="width: 250px; float: left; margin: 0px 10px"} + +With the emergence of new DNA sequencing techniques, the study of different environmental viral communities has been boosted, which has led us to realize that we know less than 1% of the global viral diversity. It is common in the different studies carried out on viral communities that the vast majority (80% on average) of the data remain unanalyzed because they do not have significant similarity to reference viruses (being the comparison with reference databases the main tool for analysis). Although massive sequencing techniques have boosted the number of (short) sequences of viral origin deposited in databases, sequencing of complete viral genomes has been limited, causing reference databases to stagnate in size. This makes it imperative to develop bioinformatics tools that allow us to better discover and characterize this viral diversity and unravel the full potential that these genomes are encoding. An important line of research in the group is to develop such tools adapted to modern sequencing technologies and state-of-the-art computational tools currently available. + +[[Viruses, 2023](https://www.mdpi.com/1999-4915/15/2/519)] +[[mSystems, 2022](https://journals.asm.org/doi/full/10.1128/msystems.00326-22)] +[[Viruses, 2021](https://www.mdpi.com/1999-4915/13/6/1164)] diff --git a/_pages/en-us/teaching.md b/_pages/en-us/teaching.md index 1e8a7ce7..517a90bf 100644 --- a/_pages/en-us/teaching.md +++ b/_pages/en-us/teaching.md @@ -4,8 +4,8 @@ layout: page permalink: /teaching/ title: teaching description: Materials for courses you taught. Replace this text with your description. -nav: true -nav_order: 6 +nav: false +nav_order: --- For now, this page is assumed to be a static description of your courses. You can convert it to a collection similar to `_projects/` so that you can have a dedicated page for each course. diff --git a/_pages/en-us/team.md b/_pages/en-us/team.md new file mode 100644 index 00000000..a39f335c --- /dev/null +++ b/_pages/en-us/team.md @@ -0,0 +1,71 @@ +--- +page_id: team +layout: page +permalink: /team/ +title: Team +description: +nav: true +nav_order: 1 +--- + +## Group members + +{% assign sorted_team = site.team | sort: "started" %} +{% assign number_printed = 0 %} +{% for member in sorted_team %} + +{% if member.started and member.ended == nil %} + +{% assign mod = number_printed | modulo: 3 %} + +{% if mod == 0 %} +
    +{% endif %} + +{% include team_member.html member=member %} + +{% assign number_printed = number_printed | plus: 1 %} + +{% if mod == 2 %} +
    +{% endif %} + +{% endif %} + +{% endfor %} + + +{% if mod != 2 %} +
    +{% endif %} + +--- + +## Past members + +
    + {% assign sorted_team = site.team | sort: "ended" | reverse %} + {% assign total_members = sorted_team.size %} + + {% for member in sorted_team %} + {% if member.started and member.ended %} + + + + {% assign column_size = total_members | divided_by: 2 %} + {% assign column_index = forloop.index0 | modulo: column_size %} + + {% if column_index == 0 %} +
    + {% else %} +
    + {% endif %} + + {% include former_team_member.html member=member %} +
    + {% endif %} + {% endfor %} +
    + + diff --git a/_pages/es-co/404.md b/_pages/es-co/404.md new file mode 100644 index 00000000..0dc45ab0 --- /dev/null +++ b/_pages/es-co/404.md @@ -0,0 +1,10 @@ +--- +page_id: not_found +layout: page +permalink: /404.html +title: "Página no encontrada" +description: "Parece que ha habido un error. Aquí no hay nada." +redirect: true +--- + +Será redirigido a la página principal en 3 segundos. Si no se le redirige, vuelva a la [página principal]({{ site.baseurl | prepend: site.url }}). diff --git a/_pages/es-co/about.md b/_pages/es-co/about.md new file mode 100644 index 00000000..e4735484 --- /dev/null +++ b/_pages/es-co/about.md @@ -0,0 +1,36 @@ +--- +page_id: about +layout: about +title: Inicio +permalink: / +subtitle: Departmento de Ciencias Biológicas, Universidad de los Andes + +profile: + align: right + image: bcem_logo_nt.png + image_circular: false # crops the image to make it circular + more_info: + +news: true # includes a list of news items +latest_posts: true # includes a list of the newest posts +selected_papers: false # includes a list of papers marked as "selected={true}" +social: true # includes social icons at the bottom of the page +--- + +Bienvenido a la página de inicio del Grupo de Investigación en Biología Computacional y Ecología Microbiana (BCEM) de Uniandes. [Somos]({{ site.url }}{{ site.baseurl }}/team) un grupo multidisciplinar implicado en el desarrollo de la biología computacional. Trabajamos en diversas áreas de investigación como la ecología microbiana, la genómica, la genética de poblaciones y la biología de sistemas. + +El BCEM es un grupo de investigación basado en principios de excelencia y rigor científico, que garantiza una investigación científica de alta calidad. Nuestros miembros se caracterizan por su pasión y curiosidad científica, así como por su alto nivel de compromiso y disciplina. Como investigadores nos basamos en el respeto mutuo, partiendo de un principio de empatía y solidaridad con el otro, reconociéndonos en nuestra singularidad, es decir, en la diferencia, lo que implica respeto y búsqueda de equidad.
    + +[He]({{ site.url }}{{ site.baseurl }}/research) aquí una descripción más detallada de nuestros intereses de investigación. + +
    +
    + +
    +
    + +
    + + + +
    \ No newline at end of file diff --git a/_pages/pt-br/about_einstein.md b/_pages/es-co/about_einstein.md similarity index 100% rename from _pages/pt-br/about_einstein.md rename to _pages/es-co/about_einstein.md diff --git a/_pages/pt-br/blog.md b/_pages/es-co/blog.md similarity index 99% rename from _pages/pt-br/blog.md rename to _pages/es-co/blog.md index ff2ae8ca..ea8cc214 100644 --- a/_pages/pt-br/blog.md +++ b/_pages/es-co/blog.md @@ -2,11 +2,11 @@ page_id: blog layout: default permalink: /blog/ -title: blog +title: Blog blog_name: al-folio em português brasileiro description: um tema simples para acadêmicos -nav: true -nav_order: 1 +nav: false +nav_order: pagination: enabled: true collection: posts diff --git a/_pages/es-co/contact.md b/_pages/es-co/contact.md new file mode 100644 index 00000000..747d2fd7 --- /dev/null +++ b/_pages/es-co/contact.md @@ -0,0 +1,26 @@ +--- +page_id: contact +layout: page +permalink: /contact/ +title: Contacto +description: +nav: true +nav_order: 6 +--- + +Universidad de los Andes
    + Cra 1 Nº 18A - 10, Bogotá, Colombia
    + Edificio Hermes (Ch), Office 201
    + + a.reyes[at]uniandes.edu.co + + +(601) 339 49 99 + + +
    + +
    + +
    + +
    diff --git a/_pages/pt-br/cv.md b/_pages/es-co/cv.md similarity index 91% rename from _pages/pt-br/cv.md rename to _pages/es-co/cv.md index 93e7ae88..74bd652f 100644 --- a/_pages/pt-br/cv.md +++ b/_pages/es-co/cv.md @@ -3,8 +3,8 @@ page_id: cv layout: cv permalink: /cv/ title: cv -nav: true -nav_order: 5 +nav: false +nav_order: cv_pdf: example_pdf.pdf description: Esta é uma descrição da página. Você pode modificá-la em '_pages/cv.md'. Também pode alterar ou remover o botão no topo de download de pdf. toc: diff --git a/_pages/pt-br/dropdown.md b/_pages/es-co/dropdown.md similarity index 91% rename from _pages/pt-br/dropdown.md rename to _pages/es-co/dropdown.md index 778b126a..522a9ccf 100644 --- a/_pages/pt-br/dropdown.md +++ b/_pages/es-co/dropdown.md @@ -2,8 +2,8 @@ id: dropdown layout: page title: submenus -nav: true -nav_order: 8 +nav: false +nav_order: dropdown: true children: - title: publicações diff --git a/_pages/es-co/gallery.md b/_pages/es-co/gallery.md new file mode 100644 index 00000000..811b2bc2 --- /dev/null +++ b/_pages/es-co/gallery.md @@ -0,0 +1,36 @@ +--- +page_id: gallery +layout: page +permalink: /gallery/ +title: Galería +description: +nav: false +nav_order: +--- + +
    + {% assign number_printed = 0 %} + {% for pic in site.data.pictures_gal %} + + {% assign even_odd = number_printed | modulo: 2 %} + +
    +
    + {{ pic.alt_text }} + +
    +
    + + {% assign number_printed = number_printed | plus: 1 %} + + {% if even_odd == 1 or forloop.last %} +
    +
    + {% endif %} + + {% endfor %} +
    + +

     

    + + diff --git a/_pages/es-co/generations.md b/_pages/es-co/generations.md new file mode 100644 index 00000000..d0135e66 --- /dev/null +++ b/_pages/es-co/generations.md @@ -0,0 +1,42 @@ +--- +page_id: generations +layout: page +permalink: /generations/ +title: BCEM a lo largo de los años +description: +nav: false +nav_order: +--- + + + +

     

    \ No newline at end of file diff --git a/_pages/pt-br/news.md b/_pages/es-co/news.md similarity index 82% rename from _pages/pt-br/news.md rename to _pages/es-co/news.md index bd09d3ee..d7839369 100644 --- a/_pages/pt-br/news.md +++ b/_pages/es-co/news.md @@ -1,7 +1,7 @@ --- page_id: news layout: page -title: novidades +title: Noticias permalink: /news/ --- diff --git a/_pages/es-co/pictures.md b/_pages/es-co/pictures.md new file mode 100644 index 00000000..83aefbe7 --- /dev/null +++ b/_pages/es-co/pictures.md @@ -0,0 +1,14 @@ +--- +id: pics +layout: page +title: Pics +nav: true +nav_order: 7 +dropdown: true +children: + - title: BCEM a lo largo de los años + permalink: /generations/ + - title: divider + - title: Galería + permalink: /gallery/ +--- diff --git a/_pages/pt-br/profiles.md b/_pages/es-co/profiles.md similarity index 97% rename from _pages/pt-br/profiles.md rename to _pages/es-co/profiles.md index 92275c11..4cdcfdcb 100644 --- a/_pages/pt-br/profiles.md +++ b/_pages/es-co/profiles.md @@ -4,8 +4,8 @@ layout: profiles permalink: /people/ title: membros description: membros do grupo de pesquisa ou laboratório -nav: true -nav_order: 7 +nav: false +nav_order: profiles: # if you want to include more than one profile, just replicate the following block diff --git a/_pages/pt-br/projects.md b/_pages/es-co/projects.md similarity index 98% rename from _pages/pt-br/projects.md rename to _pages/es-co/projects.md index 96fea725..229e04ad 100644 --- a/_pages/pt-br/projects.md +++ b/_pages/es-co/projects.md @@ -1,11 +1,11 @@ --- page_id: projects layout: page -title: projetos +title: Proyectos permalink: /projects/ description: Uma crescente coleção de seus projetos interessantes. -nav: true -nav_order: 3 +nav: false +nav_order: display_categories: [work, fun] horizontal: false --- diff --git a/_pages/pt-br/publications.md b/_pages/es-co/publications.md similarity index 55% rename from _pages/pt-br/publications.md rename to _pages/es-co/publications.md index d167930c..f1d16470 100644 --- a/_pages/pt-br/publications.md +++ b/_pages/es-co/publications.md @@ -2,10 +2,10 @@ page_id: publications layout: page permalink: /publications/ -title: publicações -description: publicações por categoria em ordem cronológica reversa. gerado pelo jekyll-scholar. +title: Publicaciones +description: nav: true -nav_order: 2 +nav_order: 4 --- diff --git a/_pages/pt-br/repositories.md b/_pages/es-co/repositories.md similarity index 98% rename from _pages/pt-br/repositories.md rename to _pages/es-co/repositories.md index 575d69ab..7269b077 100644 --- a/_pages/pt-br/repositories.md +++ b/_pages/es-co/repositories.md @@ -4,8 +4,8 @@ layout: page permalink: /repositories/ title: repositórios description: Edite o `_data/repositories.yml` e mude as listas `github_users` e `github_repos` para incluir seu próprio perfil do GitHub e repositórios. -nav: true -nav_order: 4 +nav: false +nav_order: --- ## Usuários do GitHub diff --git a/_pages/es-co/research.md b/_pages/es-co/research.md new file mode 100644 index 00000000..2c9b589a --- /dev/null +++ b/_pages/es-co/research.md @@ -0,0 +1,45 @@ +--- +page_id: research +layout: page +permalink: /research/ +title: Investigación +description: +nav: true +nav_order: 2 +--- + + +Trabajamos en diversas áreas de investigación, como ecología microbiana, genómica, genética de poblaciones y biología de sistemas. + +--- +#### **Ecología Microbiana** +![]({{ site.url }}{{ site.baseurl }}/assets/img/research/MicEco.png){: style="width: 350px; float: left; margin: 0px 10px"} + +La ecología y la microbiología parecían conceptos que no tenían nada en común por varias décadas, y el campo de la ecología microbiana tomó mucho tiempo en surgir y consolidarse. Esto en gran parte por la falta de herramientas y tecnologías para explorar este campo. No obstante, con el desarrollo de tecnologías, algoritmos y metodologías que permiten estudiar simultáneamente todos los (micro)organismos presentes en un ambiente en un momento específico, en las últimas década ha sido posible estudiar los microorganismos y sus interacciones de manera conjunta en lo que hoy se conoce como ciencias meta-ómicas. + +En un principio la metagenómica nos permitía acceder a la composición y potencial genético de ambientes, posteriormente la transcriptómica nos permitía aproximarnos a la expresión de genes en esos ambientes y actualmente con la proteómica y metabolómica podemos comenzar a entender las diferentes interacciones entre los miembros de una comunidad. Sin embargo, todas estas técnicas se han desarrollado bastante rápido y las tecnologías y algoritmos para el análisis e interpretación de estos datos ha evolucionado más en respuesta a necesidades particulares de grupos de investigación que en un pensamiento racional para optimizar el uso de los datos y recursos aprovechando los avances en capacidades de cómputo con las que se cuentan en la actualidad. + +[[Frontiers in Microbiology, 2022](https://www.frontiersin.org/articles/10.3389/fmicb.2022.813002/full)] +[[Microbiome, 2021](https://link.springer.com/article/10.1186/s40168-021-01043-8)] +[[Nutrients, 2020](https://www.mdpi.com/2072-6643/12/10/2938)] + +--- + +#### **Relaciones ecológica virus-hospedero en el intestino humano** +![]({{ site.url }}{{ site.baseurl }}/assets/img/research/Nature_Cover_2010.jpg){: style="width: 300px; float: right; margin: 0px 10px"} + +La microbiota intestinal humana es elconjunto de todos los organismos que viven en el tracto gastrointestinal del ser humano. Esta asombrosamente diversa comunidad está compuesta por los 3 dominios de la vida y sus respectivos virus. Desde el surgimiento de las técnicas moleculares para el estudio de comunidades microbianas, la microbiota intestinal ha sido uno de los principales blancos de estudio y grandes consorcios como el HMP en EE.UU. y el MetaHIT en Europa han dedicado una gran cantidad de recursos en caracterizar estas comunidades. Sin embargo, el mayor esfuerzo de estudio de estas comunidades se ha realizado en su componente procariote ignorando en su mayor parte el componente viral. De hecho, este componente puede ser mayor en número y diversidad que el mismo componente bacteriano. Los virus están presentes en cualquier ambiente donde se encuentre un potencial hospedero y sus dinámicas de predación, ciclos líticos o lisogénicos pueden tener importantes consecuencias en las dinámicas y comportamiento de la comunidad en general. El estudio y caracterización de las relaciones entre virus (con hospederos bacterianos o eucariotes) y sus diversas implicaciones en la comunidad y por ende sus consecuencias en la salud del hospedero humano, son un objetivo importante de la investigación del grupo. + +[[iScience, 2023](https://www.cell.com/iscience/fulltext/S2589-0042(23)00084-6?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2589004223000846%3Fshowall%3Dtrue)] +[[Scientific Reports, 2022](https://www.nature.com/articles/s41598-021-04679-6)] + +--- + +#### **Caracterización de viromas y genoma virales** +![]({{ site.url }}{{ site.baseurl }}/assets/img/research/Virus_2.png){: style="width: 250px; float: left; margin: 0px 10px"} + +Con el surgimiento de nuevas técnicas de secuenciación del ADN se ha impulsado el estudio de diferentes comunidades virales ambientales lo que ha llevado a darnos cuenta que conocemos menos del 1% de la diversidad viral global. Es común en los diferentes estudios que se realizan en comunidades virales que la gran mayoría (80% en promedio) de los datos queden sin analizar ya que no tienen similitud significativa a virus de referencia (siendo la comparación con bases de datos de referencia la principal herramienta de análisis). Aunque las técnicas de secuenciación masiva han disparado el número de secuencias (cortas) de origen viral depositadas en bases de datos, la secuenciación de genomas virales completos ha sido limitada, haciendo que las bases de datos de referencia se estanquen en tamaño. Esto hace imperativo el desarrollo de herramientas bioinformáticas que nos permitan descubrir y caracterizar mejor esa diversidad viral y desentrañar todo el potencial que estos genomas están codificando. Una línea importante de investigación en el grupo es desarrollar este tipo de herramientas adaptadas a las tecnologías modernas de secuenciación y a las herramientas computacionales de punta de las que se disponen en la actualidad. + +[[Viruses, 2023](https://www.mdpi.com/1999-4915/15/2/519)] +[[mSystems, 2022](https://journals.asm.org/doi/full/10.1128/msystems.00326-22)] +[[Viruses, 2021](https://www.mdpi.com/1999-4915/13/6/1164)] \ No newline at end of file diff --git a/_pages/pt-br/teaching.md b/_pages/es-co/teaching.md similarity index 94% rename from _pages/pt-br/teaching.md rename to _pages/es-co/teaching.md index 7ca6f535..98e501e9 100644 --- a/_pages/pt-br/teaching.md +++ b/_pages/es-co/teaching.md @@ -4,8 +4,8 @@ layout: page permalink: /teaching/ title: ensino description: Materiais de cursos que você ministrou. Substitua esse texto com sua descrição. -nav: true -nav_order: 6 +nav: false +nav_order: --- For now, this page is assumed to be a static description of your courses. You can convert it to a collection similar to `_projects/` so that you can have a dedicated page for each course. diff --git a/_pages/es-co/team.md b/_pages/es-co/team.md new file mode 100644 index 00000000..59ae411a --- /dev/null +++ b/_pages/es-co/team.md @@ -0,0 +1,71 @@ +--- +page_id: team +layout: page +permalink: /team/ +title: Equipo +description: +nav: true +nav_order: 1 +--- + +## Miembros del grupo + +{% assign sorted_team = site.team | sort: "started" %} +{% assign number_printed = 0 %} +{% for member in sorted_team %} + +{% if member.started and member.ended == nil %} + +{% assign mod = number_printed | modulo: 3 %} + +{% if mod == 0 %} +
    +{% endif %} + +{% include team_member.html member=member %} + +{% assign number_printed = number_printed | plus: 1 %} + +{% if mod == 2 %} +
    +{% endif %} + +{% endif %} + +{% endfor %} + + +{% if mod != 2 %} +
    +{% endif %} + +--- + +## Miembros anteriores + +
    + {% assign sorted_team = site.team | sort: "ended" | reverse %} + {% assign total_members = sorted_team.size %} + + {% for member in sorted_team %} + {% if member.started and member.ended %} + + + + {% assign column_size = total_members | divided_by: 2 %} + {% assign column_index = forloop.index0 | modulo: column_size %} + + {% if column_index == 0 %} +
    + {% else %} +
    + {% endif %} + + {% include former_team_member.html member=member %} +
    + {% endif %} + {% endfor %} +
    + + diff --git a/_pages/pt-br/404.md b/_pages/pt-br/404.md deleted file mode 100644 index 7d20b37b..00000000 --- a/_pages/pt-br/404.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -page_id: not_found -layout: page -permalink: /404.html -title: "Página não encontrada" -description: "Parece que ocorreu um erro. Não existe nada aqui." -redirect: true ---- - -Você será redirecionado para a página principal em 3 segundos. Se não for redirecionado, por favor volte para a [página principal]({{ site.baseurl | prepend: site.url }}). diff --git a/_pages/pt-br/about.md b/_pages/pt-br/about.md deleted file mode 100644 index 81e03576..00000000 --- a/_pages/pt-br/about.md +++ /dev/null @@ -1,27 +0,0 @@ ---- -page_id: about -layout: about -title: sobre -permalink: / -subtitle: Afiliações. Endereço. Contatos. Lema. Etc. - -profile: - align: right - image: prof_pic.jpg - image_circular: false # crops the image to make it circular - more_info: > -

    555 seu telefone do trabalho

    -

    123 seu endereço

    -

    Sua cidade, estado 12345

    - -news: true # includes a list of news items -latest_posts: true # includes a list of the newest posts -selected_papers: true # includes a list of papers marked as "selected={true}" -social: true # includes social icons at the bottom of the page ---- - -Escreva sua biografia aqui. Diga ao mundo sobre você. Adicione o link para o seu [subreddit](http://reddit.com) favorito. Você pode colocar uma foto também. O código já está dentro, basta nomear sua foto como `prof_pic.jpg` e colocá-la na pasta `img/`. - -Coloque seu endereço / caixa postal / outras informações logo abaixo da sua foto. Você também pode desabilitar qualquer um desses elementos editando a propriedade `profile` do cabeçalho YAML do seu `_pages/about.md`. Edite `_bibliography/papers.bib` e o Jekyll renderizará sua [página de publicações](/multi-language-al-folio/publications/) automaticamente. - -Adicione links para seus perfis de mídias sociais também. Este tema está configurado para usar [Font Awesome icons](https://fontawesome.com/) e [Academicons](https://jpswalsh.github.io/academicons/), como os visto abaixo. Adicione seu Facebook, Twitter, LinkedIn, Google Scholar ou simplesmente desative todos eles. diff --git a/_posts/pt-br/2015-03-15-formatting-and-links.md b/_posts/es-co/2015-03-15-formatting-and-links.md similarity index 100% rename from _posts/pt-br/2015-03-15-formatting-and-links.md rename to _posts/es-co/2015-03-15-formatting-and-links.md diff --git a/_posts/pt-br/2015-05-15-images.md b/_posts/es-co/2015-05-15-images.md similarity index 100% rename from _posts/pt-br/2015-05-15-images.md rename to _posts/es-co/2015-05-15-images.md diff --git a/_posts/pt-br/2015-07-15-code.md b/_posts/es-co/2015-07-15-code.md similarity index 100% rename from _posts/pt-br/2015-07-15-code.md rename to _posts/es-co/2015-07-15-code.md diff --git a/_posts/pt-br/2015-10-20-disqus-comments.md b/_posts/es-co/2015-10-20-disqus-comments.md similarity index 100% rename from _posts/pt-br/2015-10-20-disqus-comments.md rename to _posts/es-co/2015-10-20-disqus-comments.md diff --git a/_posts/pt-br/2015-10-20-math.md b/_posts/es-co/2015-10-20-math.md similarity index 100% rename from _posts/pt-br/2015-10-20-math.md rename to _posts/es-co/2015-10-20-math.md diff --git a/_posts/pt-br/2018-12-22-distill.md b/_posts/es-co/2018-12-22-distill.md similarity index 100% rename from _posts/pt-br/2018-12-22-distill.md rename to _posts/es-co/2018-12-22-distill.md diff --git a/_posts/pt-br/2020-09-28-github-metadata.md b/_posts/es-co/2020-09-28-github-metadata.md similarity index 100% rename from _posts/pt-br/2020-09-28-github-metadata.md rename to _posts/es-co/2020-09-28-github-metadata.md diff --git a/_posts/pt-br/2020-09-28-twitter.md b/_posts/es-co/2020-09-28-twitter.md similarity index 100% rename from _posts/pt-br/2020-09-28-twitter.md rename to _posts/es-co/2020-09-28-twitter.md diff --git a/_posts/pt-br/2021-07-04-diagrams.md b/_posts/es-co/2021-07-04-diagrams.md similarity index 100% rename from _posts/pt-br/2021-07-04-diagrams.md rename to _posts/es-co/2021-07-04-diagrams.md diff --git a/_posts/pt-br/2022-02-01-redirect.md b/_posts/es-co/2022-02-01-redirect.md similarity index 100% rename from _posts/pt-br/2022-02-01-redirect.md rename to _posts/es-co/2022-02-01-redirect.md diff --git a/_posts/pt-br/2022-12-10-giscus-comments.md b/_posts/es-co/2022-12-10-giscus-comments.md similarity index 100% rename from _posts/pt-br/2022-12-10-giscus-comments.md rename to _posts/es-co/2022-12-10-giscus-comments.md diff --git a/_posts/pt-br/2023-03-20-table-of-contents.md b/_posts/es-co/2023-03-20-table-of-contents.md similarity index 100% rename from _posts/pt-br/2023-03-20-table-of-contents.md rename to _posts/es-co/2023-03-20-table-of-contents.md diff --git a/_posts/pt-br/2023-03-21-tables.md b/_posts/es-co/2023-03-21-tables.md similarity index 100% rename from _posts/pt-br/2023-03-21-tables.md rename to _posts/es-co/2023-03-21-tables.md diff --git a/_posts/pt-br/2023-04-24-videos.md b/_posts/es-co/2023-04-24-videos.md similarity index 100% rename from _posts/pt-br/2023-04-24-videos.md rename to _posts/es-co/2023-04-24-videos.md diff --git a/_posts/pt-br/2023-04-25-audios.md b/_posts/es-co/2023-04-25-audios.md similarity index 100% rename from _posts/pt-br/2023-04-25-audios.md rename to _posts/es-co/2023-04-25-audios.md diff --git a/_posts/pt-br/2023-04-25-sidebar-table-of-contents.md b/_posts/es-co/2023-04-25-sidebar-table-of-contents.md similarity index 100% rename from _posts/pt-br/2023-04-25-sidebar-table-of-contents.md rename to _posts/es-co/2023-04-25-sidebar-table-of-contents.md diff --git a/_posts/pt-br/2023-05-12-custom-blockquotes.md b/_posts/es-co/2023-05-12-custom-blockquotes.md similarity index 100% rename from _posts/pt-br/2023-05-12-custom-blockquotes.md rename to _posts/es-co/2023-05-12-custom-blockquotes.md diff --git a/_posts/pt-br/2023-07-04-jupyter-notebook.md b/_posts/es-co/2023-07-04-jupyter-notebook.md similarity index 100% rename from _posts/pt-br/2023-07-04-jupyter-notebook.md rename to _posts/es-co/2023-07-04-jupyter-notebook.md diff --git a/_posts/pt-br/2023-07-12-post-bibliography.md b/_posts/es-co/2023-07-12-post-bibliography.md similarity index 100% rename from _posts/pt-br/2023-07-12-post-bibliography.md rename to _posts/es-co/2023-07-12-post-bibliography.md diff --git a/_posts/pt-br/2023-12-12-tikzjax.md b/_posts/es-co/2023-12-12-tikzjax.md similarity index 100% rename from _posts/pt-br/2023-12-12-tikzjax.md rename to _posts/es-co/2023-12-12-tikzjax.md diff --git a/_posts/pt-br/2024-01-26-chartjs.md b/_posts/es-co/2024-01-26-chartjs.md similarity index 100% rename from _posts/pt-br/2024-01-26-chartjs.md rename to _posts/es-co/2024-01-26-chartjs.md diff --git a/_posts/pt-br/2024-01-26-echarts.md b/_posts/es-co/2024-01-26-echarts.md similarity index 100% rename from _posts/pt-br/2024-01-26-echarts.md rename to _posts/es-co/2024-01-26-echarts.md diff --git a/_posts/pt-br/2024-01-26-geojson-map.md b/_posts/es-co/2024-01-26-geojson-map.md similarity index 100% rename from _posts/pt-br/2024-01-26-geojson-map.md rename to _posts/es-co/2024-01-26-geojson-map.md diff --git a/_posts/pt-br/2024-01-27-advanced-images.md b/_posts/es-co/2024-01-27-advanced-images.md similarity index 100% rename from _posts/pt-br/2024-01-27-advanced-images.md rename to _posts/es-co/2024-01-27-advanced-images.md diff --git a/_posts/pt-br/2024-01-27-code-diff.md b/_posts/es-co/2024-01-27-code-diff.md similarity index 100% rename from _posts/pt-br/2024-01-27-code-diff.md rename to _posts/es-co/2024-01-27-code-diff.md diff --git a/_posts/pt-br/2024-01-27-vega-lite.md b/_posts/es-co/2024-01-27-vega-lite.md similarity index 100% rename from _posts/pt-br/2024-01-27-vega-lite.md rename to _posts/es-co/2024-01-27-vega-lite.md diff --git a/_posts/pt-br/2024-04-15-pseudocode.md b/_posts/es-co/2024-04-15-pseudocode.md similarity index 100% rename from _posts/pt-br/2024-04-15-pseudocode.md rename to _posts/es-co/2024-04-15-pseudocode.md diff --git a/_posts/pt-br/2024-04-28-post-citation.md b/_posts/es-co/2024-04-28-post-citation.md similarity index 100% rename from _posts/pt-br/2024-04-28-post-citation.md rename to _posts/es-co/2024-04-28-post-citation.md diff --git a/_posts/pt-br/2024-04-29-typograms.md b/_posts/es-co/2024-04-29-typograms.md similarity index 100% rename from _posts/pt-br/2024-04-29-typograms.md rename to _posts/es-co/2024-04-29-typograms.md diff --git a/_posts/pt-br/2024-05-01-tabs.md b/_posts/es-co/2024-05-01-tabs.md similarity index 100% rename from _posts/pt-br/2024-05-01-tabs.md rename to _posts/es-co/2024-05-01-tabs.md diff --git a/_projects/pt-br/1_project.md b/_projects/es-co/1_project.md similarity index 100% rename from _projects/pt-br/1_project.md rename to _projects/es-co/1_project.md diff --git a/_projects/pt-br/2_project.md b/_projects/es-co/2_project.md similarity index 100% rename from _projects/pt-br/2_project.md rename to _projects/es-co/2_project.md diff --git a/_projects/pt-br/3_project.md b/_projects/es-co/3_project.md similarity index 100% rename from _projects/pt-br/3_project.md rename to _projects/es-co/3_project.md diff --git a/_projects/pt-br/4_project.md b/_projects/es-co/4_project.md similarity index 100% rename from _projects/pt-br/4_project.md rename to _projects/es-co/4_project.md diff --git a/_projects/pt-br/5_project.md b/_projects/es-co/5_project.md similarity index 100% rename from _projects/pt-br/5_project.md rename to _projects/es-co/5_project.md diff --git a/_projects/pt-br/6_project.md b/_projects/es-co/6_project.md similarity index 100% rename from _projects/pt-br/6_project.md rename to _projects/es-co/6_project.md diff --git a/_sass/_layout.scss b/_sass/_layout.scss index e18f4bcb..e5cf6eee 100644 --- a/_sass/_layout.scss +++ b/_sass/_layout.scss @@ -38,6 +38,11 @@ body.sticky-bottom-footer { } } +.img-shadow { + box-shadow: 0 4px 8px rgba(0, 0, 0, 0.25); /* Customize shadow properties as needed */ +} + + // TODO: redefine content layout. /****************************************************************************** diff --git a/_sass/_themes.scss b/_sass/_themes.scss index 7982cec5..169a1496 100644 --- a/_sass/_themes.scss +++ b/_sass/_themes.scss @@ -7,8 +7,8 @@ --global-code-bg-color: #{$code-bg-color-light}; --global-text-color: #{$black-color}; --global-text-color-light: #{$grey-color}; - --global-theme-color: #{$purple-color}; - --global-hover-color: #{$purple-color}; + --global-theme-color: #{$cyan-color}; + --global-hover-color: #{$cyan-color}; --global-hover-text-color: #{$white-color}; --global-footer-bg-color: #{$grey-color-dark}; --global-footer-text-color: #{$grey-color-light}; diff --git a/_sass/_variables.scss b/_sass/_variables.scss index 70be67f0..22bff743 100644 --- a/_sass/_variables.scss +++ b/_sass/_variables.scss @@ -47,3 +47,4 @@ $back-to-top-right: 30px; $back-to-top-diameter: 40px; $back-to-top-height: $back-to-top-diameter; $back-to-top-width: $back-to-top-diameter; + diff --git a/_team/en-us/alejandro_castellanos.md b/_team/en-us/alejandro_castellanos.md new file mode 100644 index 00000000..6ad5d843 --- /dev/null +++ b/_team/en-us/alejandro_castellanos.md @@ -0,0 +1,28 @@ +--- +name: Alejandro Castellanos +country: co +website: +photo: alejandro_castellanos.jpg +position: Visiting Researcher +# position: B.Sc. & M.Sc. +# affiliation: Computational Biology +started: 2018 +# ended: 2024 +email: a.castellanoss@uniandes.edu.co +number_educ: 3 +education1: M.Sc. in Computational Biology, Universidad de los Andes, Bogotá, Colombia +education2: B.Sc. in Physics, Universidad de los Andes, Bogotá, Colombia +education3: B.Sc. in Microbiology, Universidad de los Andes, Bogotá, Colombia +cv: +scholarusername: kseaWBoAAAAJ&hl +resgateusername: Alejandro-Castellanos-Sanchez +orcidusername: 0000-0002-1732-6918 +twitterusername: alejandrocs_98 +githubusername: alejandrocs98 +linkedinusername: alejandrocs98 +interests: Ecological and metabolic modeling of the gut microbiome +after: Graduate Student @ Duke University +position_after: Graduate Student +affiliation_after: Duke University +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/alejandro_reyes.md b/_team/en-us/alejandro_reyes.md new file mode 100644 index 00000000..2a0ec3b2 --- /dev/null +++ b/_team/en-us/alejandro_reyes.md @@ -0,0 +1,25 @@ +--- +name: Alejandro Reyes +photo: BCEM-22.jpg +country: co +website: https://cienciasbiologicas.uniandes.edu.co/es/profesores/alejandro-reyes-mu%C3%B1oz +position: Associate Professor +affiliation: Biological Sciences Department +started: 2013 +email: a.reyes@uniandes.edu.co +number_educ: 3 +education1: Ph.D. in Computational & Systems Biology, Washington University in St. Louis, USA +education2: M.Sc. in Microbiology, Universidad de los Andes, Bogotá, Colombia +education3: B.Sc. in Microbiology, Universidad de los Andes, Bogotá, Colombia +cv: +scholarusername: hbXF8UEAAAAJ +resgateusername: Alejandro-Reyes-15 +orcidusername: 0000-0003-2907-3265 +linkedinusername: alejandro-reyes-79a5a255 +publonsusername: +twitterusername: +githubusername: +arxivusername: +biorxivusername: +interests: Gut virome +--- \ No newline at end of file diff --git a/_team/en-us/andrea_borbon.md b/_team/en-us/andrea_borbon.md new file mode 100644 index 00000000..a6b7e49f --- /dev/null +++ b/_team/en-us/andrea_borbon.md @@ -0,0 +1,22 @@ +--- +name: Andrea Borbón +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: 3kLJ3QgAAAAJ& +resgateusername: +orcidusername: 0000-0002-7213-6551 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: andrea-borb%C3%B3n-b147b9b8 +twitterusername: +githubusername: +position_after: Graduate Student +affiliation_after: Max Planck Institute for Biology in Tübingen +country_after: de +--- \ No newline at end of file diff --git a/_team/en-us/angela_garcia.md b/_team/en-us/angela_garcia.md new file mode 100644 index 00000000..09a4c6f8 --- /dev/null +++ b/_team/en-us/angela_garcia.md @@ -0,0 +1,22 @@ +--- +name: Ángela S. García-Vega +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: angela-garcia-2246aa49 +twitterusername: +githubusername: +position_after: Research Associate +affiliation_after: AGROSAVIA +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/angela_pena.md b/_team/en-us/angela_pena.md new file mode 100644 index 00000000..f66e2d81 --- /dev/null +++ b/_team/en-us/angela_pena.md @@ -0,0 +1,29 @@ +--- +name: Ángela Peña +country: co +website: +photo: +position: Postdoc +started: 2019 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Lead Bioinformatics Programmer +affiliation_after: Baylor College of Medicine +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/aurelia_ayala.md b/_team/en-us/aurelia_ayala.md new file mode 100644 index 00000000..57fc1903 --- /dev/null +++ b/_team/en-us/aurelia_ayala.md @@ -0,0 +1,22 @@ +--- +name: Aurelia Ayala Usma +country: co +website: +position: M.Sc. [co-advised Silvia Restrepo] +started: 2000 +ended: 2010 +email: +cv: +scholarusername: O3VHpuEAAAAJ&hl +resgateusername: Aurelia-Ayala-Usma +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: ayalausma +twitterusername: ayala-usma +githubusername: ayala-usma +position_after: Analytics & Planning Associate +affiliation_after: Twilio Inc. +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/camila_martinez.md b/_team/en-us/camila_martinez.md new file mode 100644 index 00000000..cf876bd5 --- /dev/null +++ b/_team/en-us/camila_martinez.md @@ -0,0 +1,22 @@ +--- +name: Camila Martinez +country: co +website: +position: B.Sc. & M.Sc. +started: 2014 +ended: 2018 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: kamymartinez +twitterusername: KamyBytes +githubusername: KamyNz +position_after: Lead Research Assistant in Bioinformatics & Data Expert +affiliation_after: Cenicaña +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/camilo_garcia.md b/_team/en-us/camilo_garcia.md new file mode 100644 index 00000000..1e9bc992 --- /dev/null +++ b/_team/en-us/camilo_garcia.md @@ -0,0 +1,28 @@ +--- +name: Camilo García-Botero +country: co +website: https://camilogarciabotero.github.io/ +photo: camilo-garcia.jpeg +position: Graduate Student +affiliation: Biology +started: 2023 +ended: +number_educ: 2 +education1: M.Sc. in Biosciences, Universidad EAFIT, Medellín, Colombia +education2: B.Sc. in Biology, Universidad EAFIT, Medellín, Colombia +email: ca.garcia2@uniandes.edu.co +cv: +scholarusername: OJ6452UAAAAJ +resgateusername: Camilo-Garcia-Botero-2 +orcidusername: 0000-0002-0426-7007 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: alejandrocs98 +twitterusername: Gaspardelanoche +githubusername: camilogarciabotero +interests: Phage genes discovery and classification +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/carlos_moreno.md b/_team/en-us/carlos_moreno.md new file mode 100644 index 00000000..e964a062 --- /dev/null +++ b/_team/en-us/carlos_moreno.md @@ -0,0 +1,22 @@ +--- +name: Carlos Moreno Ibargüen +country: co +website: +position: M.Sc. +started: 2017 +ended: 2020 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: carlos-moreno-ibargüen-5b642a28 +twitterusername: +githubusername: +position_after: HPC Research Services Engineer +affiliation_after: Universidad de los Andes +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/carlos_posada.md b/_team/en-us/carlos_posada.md new file mode 100644 index 00000000..fceb0eb8 --- /dev/null +++ b/_team/en-us/carlos_posada.md @@ -0,0 +1,22 @@ +--- +name: Carlos Eduardo Posada Perlaza +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: ceposadap +twitterusername: +githubusername: +position_after: Policy Analyst +affiliation_after: International Institute for Sustainable Development +country_after: ca +--- \ No newline at end of file diff --git a/_team/en-us/catalina_ramirez.md b/_team/en-us/catalina_ramirez.md new file mode 100644 index 00000000..4a57713a --- /dev/null +++ b/_team/en-us/catalina_ramirez.md @@ -0,0 +1,22 @@ +--- +name: Catalina Ramirez Portilla +country: co +website: +position: M.Sc. [co-advised J. Armando Sánchez] +started: 2012 +ended: 2015 +email: +cv: +scholarusername: dxsKOqAAAAAJ&hl +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: catalinarp +twitterusername: CatalinaRPort +githubusername: +position_after: Graduate Student +affiliation_after: Université libre de Bruxelles | Justus Leibig University Giessen +country_after: de +--- \ No newline at end of file diff --git a/_team/en-us/daniela_betancurt.md b/_team/en-us/daniela_betancurt.md new file mode 100644 index 00000000..3e6f8a56 --- /dev/null +++ b/_team/en-us/daniela_betancurt.md @@ -0,0 +1,29 @@ +--- +name: Daniela Betancurt +country: co +website: +photo: +position: M.Sc. +started: 2020 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Graduate Student +affiliation_after: The Pennsylvania State University +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/david_alzate.md b/_team/en-us/david_alzate.md new file mode 100644 index 00000000..4579299d --- /dev/null +++ b/_team/en-us/david_alzate.md @@ -0,0 +1,22 @@ +--- +name: David Alzate +country: +website: +position: M.Sc. +started: +ended: 2000 +email: 2010 +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/david_botero.md b/_team/en-us/david_botero.md new file mode 100644 index 00000000..ddbe33ea --- /dev/null +++ b/_team/en-us/david_botero.md @@ -0,0 +1,22 @@ +--- +name: David O. Botero +country: co +website: +position: Ph.D. [co-advised Silvia Restrepo] +started: 2013 +ended: 2018 +email: +cv: +scholarusername: ylHi8lwAAAAJ&hl +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: david-octavio-botero-rozo-54286640 +twitterusername: +githubusername: +position_after: Research Associate I +affiliation_after: Cenipalma +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/dayanne_chaparro.md b/_team/en-us/dayanne_chaparro.md new file mode 100644 index 00000000..fa777915 --- /dev/null +++ b/_team/en-us/dayanne_chaparro.md @@ -0,0 +1,29 @@ +--- +name: Dayanne P. Chaparro +country: co +website: +photo: +position: M.Sc. [co-advised Diego Jiménez] +started: 2022 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/felipe_sierra.md b/_team/en-us/felipe_sierra.md new file mode 100644 index 00000000..06428768 --- /dev/null +++ b/_team/en-us/felipe_sierra.md @@ -0,0 +1,29 @@ +--- +name: Felipe Sierra +country: co +website: +photo: +position: M.Sc. [co-advised Diego Jiménez] +started: 2021 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Bioinformatician +affiliation_after: Center for Sustainable Development for Latin America +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/gamaliel_lopez.md b/_team/en-us/gamaliel_lopez.md new file mode 100644 index 00000000..c92a132a --- /dev/null +++ b/_team/en-us/gamaliel_lopez.md @@ -0,0 +1,29 @@ +--- +name: Gamaliel López Leal +country: mx +website: +photo: +position: Postdoc +started: 2020 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0001-6089-9298 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Research Professor Associate +affiliation_after: Universidad Autónoma del Estado de Morelos +country_after: mx +--- \ No newline at end of file diff --git a/_team/en-us/guillermo_luque.md b/_team/en-us/guillermo_luque.md new file mode 100644 index 00000000..b2547e8d --- /dev/null +++ b/_team/en-us/guillermo_luque.md @@ -0,0 +1,22 @@ +--- +name: Guillermo Luque +country: co +website: +position: M.Sc. +started: 2014 +ended: 2016 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: gluque +twitterusername: +githubusername: gluque +position_after: Graduate Student +affiliation_after: Max Planck Institute for Biology in Tübingen +country_after: de +--- \ No newline at end of file diff --git a/_team/en-us/guillermo_rangel.md b/_team/en-us/guillermo_rangel.md new file mode 100644 index 00000000..31ce792f --- /dev/null +++ b/_team/en-us/guillermo_rangel.md @@ -0,0 +1,22 @@ +--- +name: Guillermo Rangel-Pineros +country: co +website: +position: Secondee +started: 2018 +ended: 2020 +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0003-3848-4330 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: guillermorangelp +twitterusername: +githubusername: guille0387 +position_after: Postdoctoral Researcher +affiliation_after: University of Copenhagen +country_after: dk +--- \ No newline at end of file diff --git a/_team/en-us/irene_blanco.md b/_team/en-us/irene_blanco.md new file mode 100644 index 00000000..90a3aa6d --- /dev/null +++ b/_team/en-us/irene_blanco.md @@ -0,0 +1,30 @@ +--- +name: Irene Blanco +country: co +website: +photo: bio_photo.jpg +position: M.Sc. Student +affiliation: Biological Sciences +started: 2022 +ended: +number_educ: 2 +education1: B.Sc. in Biology, Universidad de los Andes, Colombia +education2: B.Sc. in Microbiology, Universidad de los Andes, Colombia +education3: +education4: +email: i.blancoc@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: M.Sc. Student +affiliation_after: Michigan State University +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/jorge_diaz.md b/_team/en-us/jorge_diaz.md new file mode 100644 index 00000000..a68b6701 --- /dev/null +++ b/_team/en-us/jorge_diaz.md @@ -0,0 +1,22 @@ +--- +name: Jorge Díaz +country: co +website: +position: M.Sc. +started: 2016 +ended: 2018 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: jorge-iv%C3%A1n-d%C3%ADaz-ria%C3%B1o-cb +twitterusername: +githubusername: +position_after: Computational Biology Unit Coordinator | Graduate Student +affiliation_after: Biotecgen S.A.S. | Universidad de los Andes +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/joshua_kirsch.md b/_team/en-us/joshua_kirsch.md new file mode 100644 index 00000000..37dcf041 --- /dev/null +++ b/_team/en-us/joshua_kirsch.md @@ -0,0 +1,30 @@ +--- +name: Joshua M. Kirsch +country: us +website: +photo: bio_photo.jpg +position: Visiting Graduate Student +affiliation: University of Colorado School of Medicine +started: 2024 +ended: +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/juan_anzola.md b/_team/en-us/juan_anzola.md new file mode 100644 index 00000000..15e27ed3 --- /dev/null +++ b/_team/en-us/juan_anzola.md @@ -0,0 +1,29 @@ +--- +name: Juan Manuel Anzola +country: co +website: +photo: +position: Postdoc +started: 2017 +ended: 2019 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Associate Professor +affiliation_after: Universidad Central +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/juan_pablo_londono.md b/_team/en-us/juan_pablo_londono.md new file mode 100644 index 00000000..58998273 --- /dev/null +++ b/_team/en-us/juan_pablo_londono.md @@ -0,0 +1,23 @@ +--- +name: Juan Pablo Londoño +country: co +website: +position: B.Sc. [co-advised Jorge Duitama] +affiliation: +started: 2022 +ended: 2023 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Visiting Student +affiliation_after: KAUST +country_after: sa +--- \ No newline at end of file diff --git a/_team/en-us/juan_sebastian_andrade.md b/_team/en-us/juan_sebastian_andrade.md new file mode 100644 index 00000000..d3926f97 --- /dev/null +++ b/_team/en-us/juan_sebastian_andrade.md @@ -0,0 +1,11 @@ +--- +name: Juan Sebastián Andrade +country: co +position: B.Sc. & M.Sc. +orcidusername: 0000-0001-7852-630X +started: 2016 +ended: 2020 +position_after: Gradaute Student +affiliation_after: Weill Cornell Medicine +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/juanita_puentes.md b/_team/en-us/juanita_puentes.md new file mode 100644 index 00000000..127d430d --- /dev/null +++ b/_team/en-us/juanita_puentes.md @@ -0,0 +1,30 @@ +--- +name: Juanita Puentes +country: co +website: +photo: bio_photo.jpg +position: B.Sc. Student +affiliation: Microbiology +started: 2023 +ended: +number_educ: 1 +education1: B. Eng. in Biomedical Engineering, Universidad de los Andes, Colombia +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/laura_avellaneda.md b/_team/en-us/laura_avellaneda.md new file mode 100644 index 00000000..d6e0450d --- /dev/null +++ b/_team/en-us/laura_avellaneda.md @@ -0,0 +1,22 @@ +--- +name: Laura Avellaneda-Franco +country: co +website: +position: B.Sc & M.Sc. +started: 2016 +ended: 2019 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: laura-avellaneda-franco-03a757290 +twitterusername: +githubusername: +position_after: Graduate Student +affiliation_after: Monash University +country_after: au +--- \ No newline at end of file diff --git a/_team/en-us/laura_camelo.md b/_team/en-us/laura_camelo.md new file mode 100644 index 00000000..1113c70c --- /dev/null +++ b/_team/en-us/laura_camelo.md @@ -0,0 +1,29 @@ +--- +name: Laura Camelo Varela +country: co +website: +photo: +position: B.Sc. & M.Sc. +started: 2017 +ended: 2021 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Graduate Student +affiliation_after: McGill University +country_after: ca +--- \ No newline at end of file diff --git a/_team/en-us/laura_forero.md b/_team/en-us/laura_forero.md new file mode 100644 index 00000000..d976dbd0 --- /dev/null +++ b/_team/en-us/laura_forero.md @@ -0,0 +1,11 @@ +--- +name: Laura M. Forero-Junco +country: co +position: B.Sc. & M.Sc. +orcidusername: 0000-0001-7634-1002 +started: 2014 +ended: 2019 +position_after: Graduate Student +affiliation_after: University of Copenhagen +country_after: dk +--- \ No newline at end of file diff --git a/_team/en-us/laura_gonzalez.md b/_team/en-us/laura_gonzalez.md new file mode 100644 index 00000000..1fc1d2d9 --- /dev/null +++ b/_team/en-us/laura_gonzalez.md @@ -0,0 +1,22 @@ +--- +name: Laura N. González García +country: co +website: +position: M.Sc. +started: 2014 +ended: 2017 +email: +cv: +scholarusername: kmmuwMkAAAAJ&hl +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: laura-natalia-gonzalez-garcia +twitterusername: +githubusername: +position_after: Coordinator of TI Core Facility | Graduate Student +affiliation_after: Universidad de los Andes | Université de Montpellier +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/leda_restrepo.md b/_team/en-us/leda_restrepo.md new file mode 100644 index 00000000..9da83b8f --- /dev/null +++ b/_team/en-us/leda_restrepo.md @@ -0,0 +1,29 @@ +--- +name: Leda Restrepo +country: co +website: +photo: +position: Ph.D. +started: 2017 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0003-1784-3752 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Postdoctoral Fellow +affiliation_after: Johns Hopkins University +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/leonardo_moreno.md b/_team/en-us/leonardo_moreno.md new file mode 100644 index 00000000..301ba6a3 --- /dev/null +++ b/_team/en-us/leonardo_moreno.md @@ -0,0 +1,22 @@ +--- +name: J. Leonardo Moreno-Gallego +country: co +website: +position: M.Sc. +started: 2014 +ended: 2016 +email: +cv: +scholarusername: +resgateusername: J-Moreno-Gallego +orcidusername: 0000-0001-7596-673X +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: j-leonardo-moreno-gallego-60154249 +twitterusername: +githubusername: +position_after: Graduate Student +affiliation_after: Max Planck Institute for Biology in Tübingen +country_after: de +--- \ No newline at end of file diff --git a/_team/en-us/liliane_santana.md b/_team/en-us/liliane_santana.md new file mode 100644 index 00000000..1e1b4030 --- /dev/null +++ b/_team/en-us/liliane_santana.md @@ -0,0 +1,22 @@ +--- +name: Liliane Santana +country: br +website: +position: Visiting Graduate Student +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/lorena_monserrate.md b/_team/en-us/lorena_monserrate.md new file mode 100644 index 00000000..b89ae2bc --- /dev/null +++ b/_team/en-us/lorena_monserrate.md @@ -0,0 +1,29 @@ +--- +name: Lorena Monserrate Maggi +country: ec +website: +photo: +position: Visiting Masters Student +started: 2022 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: Lorena-Monserrate-M +orcidusername: 0000-0001-9161-9471 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Researcher +affiliation_after: Centro de Investigaciones Biotecnológicas del Ecuador - ESPOL +country_after: ec +--- \ No newline at end of file diff --git a/_team/en-us/luis_chica.md b/_team/en-us/luis_chica.md new file mode 100644 index 00000000..6d658da5 --- /dev/null +++ b/_team/en-us/luis_chica.md @@ -0,0 +1,21 @@ +--- +name: Luis A. Chica Cárdenas +country: co +position: B.Sc. & M.Sc. +started: 2016 +ended: 2021 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Graduate Student +affiliation_after: Washington University in St. Louis +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/luisa_arias.md b/_team/en-us/luisa_arias.md new file mode 100644 index 00000000..4d553f88 --- /dev/null +++ b/_team/en-us/luisa_arias.md @@ -0,0 +1,22 @@ +--- +name: Luisa Arias +country: co +website: +position: B.Sc +started: 2020 +ended: 2022 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: M.Sc. Student +affiliation_after: Uniersidad de los Andes +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/luisa_matiz.md b/_team/en-us/luisa_matiz.md new file mode 100644 index 00000000..c6030aa4 --- /dev/null +++ b/_team/en-us/luisa_matiz.md @@ -0,0 +1,29 @@ +--- +name: Luisa Fernanda Matiz Cerón +country: co +website: +photo: +position: M.Sc. +started: 2018 +ended: 2021 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Graduate Student +affiliation_after: Hokkaido University +country_after: jp +--- \ No newline at end of file diff --git a/_team/en-us/luisa_sacristan.md b/_team/en-us/luisa_sacristan.md new file mode 100644 index 00000000..9edda5df --- /dev/null +++ b/_team/en-us/luisa_sacristan.md @@ -0,0 +1,30 @@ +--- +name: Luisa Sacristán +country: co +website: +photo: luisa_sacristan.jpg +position: Researcher +affiliation: CABANA +started: 2022 +ended: +number_educ: 2 +education1: M.Sc. in Computational Biology, Universidad de los Andes, Bogotá, Colombia +education2: B.Sc. in Microbiology, Universidad de Pamplona, Pamplona, Colombia +education3: +education4: +email: lf.sacristan2215@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: lusacristan +interests: Ancient DNA metagenomics +position_after: +affiliation_after: +country_after: ie +--- \ No newline at end of file diff --git a/_team/en-us/maria_alejandra_ulloa.md b/_team/en-us/maria_alejandra_ulloa.md new file mode 100644 index 00000000..cb6c1071 --- /dev/null +++ b/_team/en-us/maria_alejandra_ulloa.md @@ -0,0 +1,29 @@ +--- +name: María Alejandra Ulloa +country: co +website: +photo: +position: B.Sc. +started: 2020 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: ma-alejandra-ulloa +twitterusername: +githubusername: +interests: +position_after: M.Sc. Student +affiliation_after: KTH | Stockholm University | Karolinska Institute +country_after: se +--- \ No newline at end of file diff --git a/_team/en-us/maria_anotnia_madrid.md b/_team/en-us/maria_anotnia_madrid.md new file mode 100644 index 00000000..fe11ec01 --- /dev/null +++ b/_team/en-us/maria_anotnia_madrid.md @@ -0,0 +1,29 @@ +--- +name: María Antonia Madrid +country: co +website: +photo: +position: B.Sc. +started: 2020 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0003-2383-6161 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: maria-antonia-madrid-restrepo +twitterusername: mariamadrid26 +githubusername: mariamadrid19 +interests: +position_after: M.Sc. Student +affiliation_after: KU Leuven +country_after: be +--- \ No newline at end of file diff --git a/_team/en-us/maria_fernanda_pena.md b/_team/en-us/maria_fernanda_pena.md new file mode 100644 index 00000000..4f44551e --- /dev/null +++ b/_team/en-us/maria_fernanda_pena.md @@ -0,0 +1,30 @@ +--- +name: María Fernanda Peña +country: co +website: +photo: maria_fernanda_pena.jpg +position: M.Sc. Student [co-advised Diego Jiménez] +affiliation: Biological Sciences +started: 2022 +ended: +number_educ: 1 +education1: B.Sc. in Biology, Universidad de Antioquía, Medellín, Colombia +education2: +education3: +education4: +email: mf.penav1@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: Microbial ecology of mangrove soils +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/maryam_chaib_demares.md b/_team/en-us/maryam_chaib_demares.md new file mode 100644 index 00000000..79efbeb2 --- /dev/null +++ b/_team/en-us/maryam_chaib_demares.md @@ -0,0 +1,29 @@ +--- +name: Maryam Chaib De Mares +country: co +website: +photo: +position: Postdoc +started: 2019 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0002-3359-3258 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: maryamchaibdemares +twitterusername: +githubusername: +interests: +position_after: Assistant Professor +affiliation_after: Universidad Nacional de Colombia +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/mauricio_pacheco.md b/_team/en-us/mauricio_pacheco.md new file mode 100644 index 00000000..f4eb31f0 --- /dev/null +++ b/_team/en-us/mauricio_pacheco.md @@ -0,0 +1,22 @@ +--- +name: Mauricio Pacheco +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Bioinformatician +affiliation_after: Public Health Laboratory of the Secretariat of Health of Bogota +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/mauricio_rico.md b/_team/en-us/mauricio_rico.md new file mode 100644 index 00000000..2a6083c4 --- /dev/null +++ b/_team/en-us/mauricio_rico.md @@ -0,0 +1,29 @@ +--- +name: E. Mauricio Rico +country: co +website: +photo: +position: M.Sc. +started: 2020 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: https://www.researchgate.net/profile/Edgar-Rico-Sierra +orcidusername: 0000-0003-4291-7119 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Research Assistant +affiliation_after: AGROSAVIA (Centro de Investigación Nataima) +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/member_template.md b/_team/en-us/member_template.md new file mode 100644 index 00000000..c6052513 --- /dev/null +++ b/_team/en-us/member_template.md @@ -0,0 +1,29 @@ +--- +name: +country: +website: +photo: +position: +affiliation: +started: +ended: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/miguel_parra.md b/_team/en-us/miguel_parra.md new file mode 100644 index 00000000..a0bad78f --- /dev/null +++ b/_team/en-us/miguel_parra.md @@ -0,0 +1,22 @@ +--- +name: Miguel Parra +country: co +website: +position: Postdoc +started: 2016 +ended: 2018 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Research Associate +affiliation_after: Universidad del Bosque +country_after: co +--- \ No newline at end of file diff --git a/_team/en-us/nathalia_portilla.md b/_team/en-us/nathalia_portilla.md new file mode 100644 index 00000000..f181c656 --- /dev/null +++ b/_team/en-us/nathalia_portilla.md @@ -0,0 +1,30 @@ +--- +name: Nathalia A. Portilla +country: co +website: +photo: nathalia_portilla.jpg +position: M.Sc. Student +affiliation: Computational Biology +started: 2020 +ended: +number_educ: 1 +education1: B.Sc. in Microbiology, Universidad de los Andes, Bogotá, Colombia +education2: +education3: +education4: +email: mf.penav1@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: portillanath +interests: Phage taxonomy +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/nickole_villabona.md b/_team/en-us/nickole_villabona.md new file mode 100644 index 00000000..23ae30be --- /dev/null +++ b/_team/en-us/nickole_villabona.md @@ -0,0 +1,29 @@ +--- +name: Nickole Villabona +country: co +website: +photo: +position: B.Sc. +started: 2018 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: odpyW8YAAAAJ&hl +resgateusername: +orcidusername: 0000-0001-5269-2270 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: nickole-villabona-b48357232 +twitterusername: +githubusername: +interests: +position_after: Graduate Student +affiliation_after: University of California, Irvine +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/pablo_cardenas.md b/_team/en-us/pablo_cardenas.md new file mode 100644 index 00000000..c1bddecc --- /dev/null +++ b/_team/en-us/pablo_cardenas.md @@ -0,0 +1,22 @@ +--- +name: Pablo Cárdenas +country: co +website: https://pablo-cardenas.com/ +position: B.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: Iu05ZuQAAAAJ +resgateusername: Pablo-Cardenas-R +orcidusername: 0000-0001-7015-0512 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: pablocarderam +twitterusername: pcr_guy +githubusername: pablocarderam +position_after: Graduate Student +affiliation_after: MIT +country_after: us +--- \ No newline at end of file diff --git a/_team/en-us/ruth_hernandez.md b/_team/en-us/ruth_hernandez.md new file mode 100644 index 00000000..24e26749 --- /dev/null +++ b/_team/en-us/ruth_hernandez.md @@ -0,0 +1,22 @@ +--- +name: Ruth Hernández +country: co +website: +position: Ph.D. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/santiago_melo.md b/_team/en-us/santiago_melo.md new file mode 100644 index 00000000..a7c0dd8b --- /dev/null +++ b/_team/en-us/santiago_melo.md @@ -0,0 +1,22 @@ +--- +name: Santiago Melo +country: co +website: +position: +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/silvia_rodriguez.md b/_team/en-us/silvia_rodriguez.md new file mode 100644 index 00000000..b2677613 --- /dev/null +++ b/_team/en-us/silvia_rodriguez.md @@ -0,0 +1,30 @@ +--- +name: Silvia Rodríguez +country: co +website: +photo: bio_photo.jpg +position: B.Sc. Student +affiliation: Biology +started: 2023 +ended: +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/en-us/zaide_montes.md b/_team/en-us/zaide_montes.md new file mode 100644 index 00000000..1d4ebee4 --- /dev/null +++ b/_team/en-us/zaide_montes.md @@ -0,0 +1,11 @@ +--- +name: Zaide K. Montes Ortiz +country: co +position: B.Sc. & M.Sc. +orcidusername: +started: 2015 +ended: 2021 +position_after: Graduate Student +affiliation_after: Lund University | nGICE Max Planck Center +country_after: se +--- \ No newline at end of file diff --git a/_team/es-co/alejandro_castellanos.md b/_team/es-co/alejandro_castellanos.md new file mode 100644 index 00000000..a9ea30af --- /dev/null +++ b/_team/es-co/alejandro_castellanos.md @@ -0,0 +1,26 @@ +--- +name: Alejandro Castellanos +country: co +website: +photo: alejandro_castellanos.jpg +position: Investigador Visitante +# position: B.Sc. & M.Sc. +# affiliation: Computational Biology +started: 2018 +# ended: 2024 +email: a.castellanoss@uniandes.edu.co +education1: M.Sc. en Biología Computacional, Universidad de los Andes, Bogotá, Colombia +education2: B.Sc. en Física, Universidad de los Andes, Bogotá, Colombia +education3: B.Sc. en Microbiología, Universidad de los Andes, Bogotá, Colombia +cv: +scholarusername: kseaWBoAAAAJ&hl +resgateusername: Alejandro-Castellanos-Sanchez +orcidusername: 0000-0002-1732-6918 +twitterusername: alejandrocs_98 +githubusername: alejandrocs98 +linkedinusername: alejandrocs98 +interests: Modelamiento ecológico y metabólico de la microbiota intestinal +position_after: Estudiante Doctoral +affiliation_after: Duke University +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/alejandro_reyes.md b/_team/es-co/alejandro_reyes.md new file mode 100644 index 00000000..e0c74b5d --- /dev/null +++ b/_team/es-co/alejandro_reyes.md @@ -0,0 +1,24 @@ +--- +name: Alejandro Reyes +photo: BCEM-22.jpg +country: co +website: https://cienciasbiologicas.uniandes.edu.co/es/profesores/alejandro-reyes-mu%C3%B1oz +position: Profesor Asociado +affiliation: Departmento de Ciencias Biológicas +started: 2013 +email: a.reyes@uniandes.edu.co +education1: Ph.D. en Biología Computacional & de Systemas, Washington University in St. Louis, USA +education2: M.Sc. en Microbiología, Universidad de los Andes, Bogotá, Colombia +education3: B.Sc. en Microbiología, Universidad de los Andes, Bogotá, Colombia +cv: +scholarusername: hbXF8UEAAAAJ +resgateusername: Alejandro-Reyes-15 +orcidusername: 0000-0003-2907-3265 +linkedinusername: alejandro-reyes-79a5a255 +publonsusername: +twitterusername: +githubusername: +arxivusername: +biorxivusername: +interests: Viroma intestinal +--- \ No newline at end of file diff --git a/_team/es-co/andrea_borbon.md b/_team/es-co/andrea_borbon.md new file mode 100644 index 00000000..b9eeb515 --- /dev/null +++ b/_team/es-co/andrea_borbon.md @@ -0,0 +1,22 @@ +--- +name: Andrea Borbón +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: 3kLJ3QgAAAAJ& +resgateusername: +orcidusername: 0000-0002-7213-6551 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: andrea-borb%C3%B3n-b147b9b8 +twitterusername: +githubusername: +position_after: Estudiante Doctoral +affiliation_after: Instituto Max Planck para Biología en Tübingen +country_after: de +--- \ No newline at end of file diff --git a/_team/es-co/angela_garcia.md b/_team/es-co/angela_garcia.md new file mode 100644 index 00000000..3f0d57ac --- /dev/null +++ b/_team/es-co/angela_garcia.md @@ -0,0 +1,22 @@ +--- +name: Ángela S. García-Vega +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: angela-garcia-2246aa49 +twitterusername: +githubusername: +position_after: Asociado de Investigación +affiliation_after: AGROSAVIA +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/angela_pena.md b/_team/es-co/angela_pena.md new file mode 100644 index 00000000..90d8fb19 --- /dev/null +++ b/_team/es-co/angela_pena.md @@ -0,0 +1,28 @@ +--- +name: Ángela Peña +country: co +website: +photo: +position: Postdoc +started: 2019 +ended: 2022 +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Programador Jefe de Bioinformática +affiliation_after: Baylor College of Medicine +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/aurelia_ayala.md b/_team/es-co/aurelia_ayala.md new file mode 100644 index 00000000..bb14fb6b --- /dev/null +++ b/_team/es-co/aurelia_ayala.md @@ -0,0 +1,22 @@ +--- +name: Aurelia Ayala Usma +country: co +website: +position: M.Sc. [co-dirigide Silvia Restrepo] +started: 2000 +ended: 2010 +email: +cv: +scholarusername: O3VHpuEAAAAJ&hl +resgateusername: Aurelia-Ayala-Usma +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: ayalausma +twitterusername: ayala-usma +githubusername: ayala-usma +position_after: Asociado de Análisis & Planificación +affiliation_after: Twilio Inc. +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/camila_martinez.md b/_team/es-co/camila_martinez.md new file mode 100644 index 00000000..5d923efb --- /dev/null +++ b/_team/es-co/camila_martinez.md @@ -0,0 +1,22 @@ +--- +name: Camila Martinez +country: co +website: +position: B.Sc. & M.Sc. +started: 2014 +ended: 2018 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: kamymartinez +twitterusername: KamyBytes +githubusername: KamyNz +position_after: Asistente Principal de Investigación en Bioinformática y Experta en Datos +affiliation_after: Cenicaña +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/camilo_garcia.md b/_team/es-co/camilo_garcia.md new file mode 100644 index 00000000..d142c865 --- /dev/null +++ b/_team/es-co/camilo_garcia.md @@ -0,0 +1,27 @@ +--- +name: Camilo García-Botero +country: co +website: https://camilogarciabotero.github.io/ +photo: camilo-garcia.jpeg +position: Estudiante Doctoral +affiliation: Ciencias Biológicas +started: 2023 +ended: +education1: M.Sc. en Biociencias, Universidad EAFIT, Medellín, Colombia +education2: B.Sc. en Biología, Universidad EAFIT, Medellín, Colombia +email: ca.garcia2@uniandes.edu.co +cv: +scholarusername: OJ6452UAAAAJ +resgateusername: Camilo-Garcia-Botero-2 +orcidusername: 0000-0002-0426-7007 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: alejandrocs98 +twitterusername: Gaspardelanoche +githubusername: camilogarciabotero +interests: Descubrimiento y clasificación de genes de fagos +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/carlos_moreno.md b/_team/es-co/carlos_moreno.md new file mode 100644 index 00000000..a6dc9ff7 --- /dev/null +++ b/_team/es-co/carlos_moreno.md @@ -0,0 +1,22 @@ +--- +name: Carlos Moreno Ibargüen +country: co +website: +position: M.Sc. +started: 2017 +ended: 2020 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: carlos-moreno-ibargüen-5b642a28 +twitterusername: +githubusername: +position_after: Ingeniero de Servicios de Investigación HPC +affiliation_after: Universidad de los Andes +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/carlos_posada.md b/_team/es-co/carlos_posada.md new file mode 100644 index 00000000..7def48dd --- /dev/null +++ b/_team/es-co/carlos_posada.md @@ -0,0 +1,22 @@ +--- +name: Carlos Eduardo Posada Perlaza +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: ceposadap +twitterusername: +githubusername: +position_after: Analista de Políticas +affiliation_after: Instituto Internacional de Desarrollo Sostenible +country_after: ca +--- \ No newline at end of file diff --git a/_team/es-co/catalina_ramirez.md b/_team/es-co/catalina_ramirez.md new file mode 100644 index 00000000..4421a965 --- /dev/null +++ b/_team/es-co/catalina_ramirez.md @@ -0,0 +1,22 @@ +--- +name: Catalina Ramirez Portilla +country: co +website: +position: M.Sc. [co-dirigida J. Armando Sánchez] +started: 2012 +ended: 2015 +email: +cv: +scholarusername: dxsKOqAAAAAJ&hl +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: catalinarp +twitterusername: CatalinaRPort +githubusername: +position_after: Estudiante Doctoral +affiliation_after: Université libre de Bruxelles | Justus Leibig University Giessen +country_after: de +--- \ No newline at end of file diff --git a/_team/es-co/daniela_betancurt.md b/_team/es-co/daniela_betancurt.md new file mode 100644 index 00000000..7504de30 --- /dev/null +++ b/_team/es-co/daniela_betancurt.md @@ -0,0 +1,29 @@ +--- +name: Daniela Betancurt +country: co +website: +photo: +position: M.Sc. +started: 2020 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Estudiante Doctoral +affiliation_after: The Pennsylvania State University +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/david_alzate.md b/_team/es-co/david_alzate.md new file mode 100644 index 00000000..4579299d --- /dev/null +++ b/_team/es-co/david_alzate.md @@ -0,0 +1,22 @@ +--- +name: David Alzate +country: +website: +position: M.Sc. +started: +ended: 2000 +email: 2010 +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/david_botero.md b/_team/es-co/david_botero.md new file mode 100644 index 00000000..d517042e --- /dev/null +++ b/_team/es-co/david_botero.md @@ -0,0 +1,22 @@ +--- +name: David O. Botero +country: co +website: +position: Ph.D. [co-dirigido Silvia Restrepo] +started: 2013 +ended: 2018 +email: +cv: +scholarusername: ylHi8lwAAAAJ&hl +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: david-octavio-botero-rozo-54286640 +twitterusername: +githubusername: +position_after: Investigador Asociado I +affiliation_after: Cenipalma +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/dayanne_chaparro.md b/_team/es-co/dayanne_chaparro.md new file mode 100644 index 00000000..95599fc2 --- /dev/null +++ b/_team/es-co/dayanne_chaparro.md @@ -0,0 +1,29 @@ +--- +name: Dayanne P. Chaparro +country: co +website: +photo: +position: M.Sc. [co-dirigida Diego Jiménez] +started: 2022 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/felipe_sierra.md b/_team/es-co/felipe_sierra.md new file mode 100644 index 00000000..6acac62c --- /dev/null +++ b/_team/es-co/felipe_sierra.md @@ -0,0 +1,29 @@ +--- +name: Felipe Sierra +country: co +website: +photo: +position: M.Sc. [co-dirigido Diego Jiménez] +started: 2021 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Bioinformático +affiliation_after: Centro de Desarrollo Sostenible para América Latina +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/gamaliel_lopez.md b/_team/es-co/gamaliel_lopez.md new file mode 100644 index 00000000..2faca01e --- /dev/null +++ b/_team/es-co/gamaliel_lopez.md @@ -0,0 +1,29 @@ +--- +name: Gamaliel López Leal +country: mx +website: +photo: +position: Postdoc +started: 2020 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0001-6089-9298 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Profesor de Investigación Asociado +affiliation_after: Universidad Autónoma del Estado de Morelos +country_after: mx +--- \ No newline at end of file diff --git a/_team/es-co/guillermo_luque.md b/_team/es-co/guillermo_luque.md new file mode 100644 index 00000000..d3db101b --- /dev/null +++ b/_team/es-co/guillermo_luque.md @@ -0,0 +1,22 @@ +--- +name: Guillermo Luque +country: co +website: +position: M.Sc. +started: 2014 +ended: 2016 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: gluque +twitterusername: +githubusername: gluque +position_after: Estudiante Doctoral +affiliation_after: Instituto Max Planck para Biología en Tübingen +country_after: de +--- \ No newline at end of file diff --git a/_team/es-co/guillermo_rangel.md b/_team/es-co/guillermo_rangel.md new file mode 100644 index 00000000..9bfabb82 --- /dev/null +++ b/_team/es-co/guillermo_rangel.md @@ -0,0 +1,22 @@ +--- +name: Guillermo Rangel-Pineros +country: co +website: +position: Investigador +started: 2018 +ended: 2020 +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0003-3848-4330 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: guillermorangelp +twitterusername: +githubusername: guille0387 +position_after: Investigador Postdoctoral +affiliation_after: University of Copenhagen +country_after: dk +--- \ No newline at end of file diff --git a/_team/es-co/irene_blanco.md b/_team/es-co/irene_blanco.md new file mode 100644 index 00000000..fb5919de --- /dev/null +++ b/_team/es-co/irene_blanco.md @@ -0,0 +1,30 @@ +--- +name: Irene Blanco +country: co +website: +photo: bio_photo.jpg +position: M.Sc. Student +affiliation: Ciencias Biológicas +started: 2022 +ended: +number_educ: 2 +education1: B.Sc. en Biología, Universidad de los Andes, Colombia +education2: B.Sc. en Microbiología, Universidad de los Andes, Colombia +education3: +education4: +email: i.blancoc@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Estudiante de Maestría +affiliation_after: Michigan State University +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/jorge_diaz.md b/_team/es-co/jorge_diaz.md new file mode 100644 index 00000000..5063546e --- /dev/null +++ b/_team/es-co/jorge_diaz.md @@ -0,0 +1,22 @@ +--- +name: Jorge Díaz +country: co +website: +position: M.Sc. +started: 2016 +ended: 2018 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: jorge-iv%C3%A1n-d%C3%ADaz-ria%C3%B1o-cb +twitterusername: +githubusername: +position_after: Coordinar de la Unidad de Biología Computacional | Estudiante Doctoral +affiliation_after: Biotecgen S.A.S. | Universidad de los Andes +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/joshua_kirsch.md b/_team/es-co/joshua_kirsch.md new file mode 100644 index 00000000..c1633ac3 --- /dev/null +++ b/_team/es-co/joshua_kirsch.md @@ -0,0 +1,30 @@ +--- +name: Joshua M. Kirsch +country: us +website: +photo: bio_photo.jpg +position: Pasante Doctoral +affiliation: University of Colorado School of Medicine +started: 2024 +ended: +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/juan_anzola.md b/_team/es-co/juan_anzola.md new file mode 100644 index 00000000..1c2fed14 --- /dev/null +++ b/_team/es-co/juan_anzola.md @@ -0,0 +1,29 @@ +--- +name: Juan Manuel Anzola +country: co +website: +photo: +position: Postdoc +started: 2017 +ended: 2019 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Profesor Asociado +affiliation_after: Universidad Central +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/juan_pablo_londono.md b/_team/es-co/juan_pablo_londono.md new file mode 100644 index 00000000..14ae48e1 --- /dev/null +++ b/_team/es-co/juan_pablo_londono.md @@ -0,0 +1,23 @@ +--- +name: Juan Pablo Londoño +country: co +website: +position: B.Sc. [co-dirigido Jorge Duitama] +affiliation: +started: 2022 +ended: 2023 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Pasante +affiliation_after: KAUST +country_after: sa +--- \ No newline at end of file diff --git a/_team/es-co/juan_sebastian_andrade.md b/_team/es-co/juan_sebastian_andrade.md new file mode 100644 index 00000000..0395b5fa --- /dev/null +++ b/_team/es-co/juan_sebastian_andrade.md @@ -0,0 +1,11 @@ +--- +name: Juan Sebastián Andrade +country: co +position: B.Sc. & M.Sc. +orcidusername: 0000-0001-7852-630X +started: 2016 +ended: 2020 +position_after: Estudiante Doctoral +affiliation_after: Weill Cornell Medicine +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/juanita_puentes.md b/_team/es-co/juanita_puentes.md new file mode 100644 index 00000000..f2adf20c --- /dev/null +++ b/_team/es-co/juanita_puentes.md @@ -0,0 +1,30 @@ +--- +name: Juanita Puentes +country: co +website: +photo: bio_photo.jpg +position: B.Sc. Student +affiliation: Microbiología +started: 2023 +ended: +number_educ: 1 +education1: B. Eng. en Ingeniería Biomédica, Universidad de los Andes, Colombia +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/laura_avellaneda.md b/_team/es-co/laura_avellaneda.md new file mode 100644 index 00000000..731137fa --- /dev/null +++ b/_team/es-co/laura_avellaneda.md @@ -0,0 +1,22 @@ +--- +name: Laura Avellaneda-Franco +country: co +website: +position: B.Sc & M.Sc. +started: 2016 +ended: 2019 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: laura-avellaneda-franco-03a757290 +twitterusername: +githubusername: +position_after: Estudiante Doctoral +affiliation_after: Monash University +country_after: au +--- \ No newline at end of file diff --git a/_team/es-co/laura_camelo.md b/_team/es-co/laura_camelo.md new file mode 100644 index 00000000..f8784b78 --- /dev/null +++ b/_team/es-co/laura_camelo.md @@ -0,0 +1,29 @@ +--- +name: Laura Camelo Varela +country: co +website: +photo: +position: B.Sc. & M.Sc. +started: 2017 +ended: 2021 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Estudiante Doctoral +affiliation_after: McGill University +country_after: ca +--- \ No newline at end of file diff --git a/_team/es-co/laura_forero.md b/_team/es-co/laura_forero.md new file mode 100644 index 00000000..efa8e6e5 --- /dev/null +++ b/_team/es-co/laura_forero.md @@ -0,0 +1,11 @@ +--- +name: Laura M. Forero-Junco +country: co +position: B.Sc. & M.Sc. +orcidusername: 0000-0001-7634-1002 +started: 2014 +ended: 2019 +position_after: Estudiante Doctoral +affiliation_after: University of Copenhagen +country_after: dk +--- \ No newline at end of file diff --git a/_team/es-co/laura_gonzalez.md b/_team/es-co/laura_gonzalez.md new file mode 100644 index 00000000..1d2f1812 --- /dev/null +++ b/_team/es-co/laura_gonzalez.md @@ -0,0 +1,22 @@ +--- +name: Laura N. González García +country: co +website: +position: M.Sc. +started: 2014 +ended: 2017 +email: +cv: +scholarusername: kmmuwMkAAAAJ&hl +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: laura-natalia-gonzalez-garcia +twitterusername: +githubusername: +position_after: Coordinadora del Centro de Servicios IT | Estudiante Doctoral +affiliation_after: Universidad de los Andes | Université de Montpellier +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/leda_restrepo.md b/_team/es-co/leda_restrepo.md new file mode 100644 index 00000000..71ffa1d0 --- /dev/null +++ b/_team/es-co/leda_restrepo.md @@ -0,0 +1,28 @@ +--- +name: Leda Restrepo +country: co +website: +photo: +position: Ph.D. +started: 2017 +ended: 2022 +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0003-1784-3752 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Investiogadora Postdoctoral +affiliation_after: Johns Hopkins University +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/leonardo_moreno.md b/_team/es-co/leonardo_moreno.md new file mode 100644 index 00000000..40b817a5 --- /dev/null +++ b/_team/es-co/leonardo_moreno.md @@ -0,0 +1,22 @@ +--- +name: J. Leonardo Moreno-Gallego +country: co +website: +position: M.Sc. +started: 2014 +ended: 2016 +email: +cv: +scholarusername: +resgateusername: J-Moreno-Gallego +orcidusername: 0000-0001-7596-673X +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: j-leonardo-moreno-gallego-60154249 +twitterusername: +githubusername: +position_after: Estudiante Doctoral +affiliation_after: Instituto Max Planck para Biología en Tübingen +country_after: de +--- \ No newline at end of file diff --git a/_team/es-co/liliane_santana.md b/_team/es-co/liliane_santana.md new file mode 100644 index 00000000..f86c7fe6 --- /dev/null +++ b/_team/es-co/liliane_santana.md @@ -0,0 +1,22 @@ +--- +name: Liliane Santana +country: br +website: +position: Pasante Doctoral +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/lorena_monserrate.md b/_team/es-co/lorena_monserrate.md new file mode 100644 index 00000000..16f4fea6 --- /dev/null +++ b/_team/es-co/lorena_monserrate.md @@ -0,0 +1,29 @@ +--- +name: Lorena Monserrate Maggi +country: ec +website: +photo: +position: Pasante de Maestría +started: 2022 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: Lorena-Monserrate-M +orcidusername: 0000-0001-9161-9471 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Investigadora +affiliation_after: Centro de Investigaciones Biotecnológicas del Ecuador - ESPOL +country_after: ec +--- \ No newline at end of file diff --git a/_team/es-co/luis_chica.md b/_team/es-co/luis_chica.md new file mode 100644 index 00000000..68e70d7d --- /dev/null +++ b/_team/es-co/luis_chica.md @@ -0,0 +1,21 @@ +--- +name: Luis A. Chica Cárdenas +country: co +position: B.Sc. & M.Sc. +started: 2016 +ended: 2021 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Estudiante Doctoral +affiliation_after: Washington University in St. Louis +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/luisa_arias.md b/_team/es-co/luisa_arias.md new file mode 100644 index 00000000..a4753619 --- /dev/null +++ b/_team/es-co/luisa_arias.md @@ -0,0 +1,22 @@ +--- +name: Luisa Arias +country: co +website: +position: B.Sc +started: 2020 +ended: 2022 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Estudiante de Maestría +affiliation_after: Uniersidad de los Andes +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/luisa_matiz.md b/_team/es-co/luisa_matiz.md new file mode 100644 index 00000000..50e39929 --- /dev/null +++ b/_team/es-co/luisa_matiz.md @@ -0,0 +1,29 @@ +--- +name: Luisa Fernanda Matiz Cerón +country: co +website: +photo: +position: M.Sc. +started: 2018 +ended: 2021 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Estudiante Doctoral +affiliation_after: Hokkaido University +country_after: jp +--- \ No newline at end of file diff --git a/_team/es-co/luisa_sacristan.md b/_team/es-co/luisa_sacristan.md new file mode 100644 index 00000000..4c2a46c8 --- /dev/null +++ b/_team/es-co/luisa_sacristan.md @@ -0,0 +1,30 @@ +--- +name: Luisa Sacristán +country: co +website: +photo: luisa_sacristan.jpg +position: Investigadora Asociada +affiliation: CABANA +started: 2022 +ended: +number_educ: 2 +education1: M.Sc. en Biología Computacional, Universidad de los Andes, Bogotá, Colombia +education2: B.Sc. en Microbiología, Universidad de Pamplona, Pamplona, Colombia +education3: +education4: +email: lf.sacristan2215@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: lusacristan +interests: Metagenómica de ADN ancestralñ +position_after: Estudiante Doctoral +affiliation_after: +country_after: ie +--- \ No newline at end of file diff --git a/_team/es-co/maria_alejandra_ulloa.md b/_team/es-co/maria_alejandra_ulloa.md new file mode 100644 index 00000000..001c0252 --- /dev/null +++ b/_team/es-co/maria_alejandra_ulloa.md @@ -0,0 +1,29 @@ +--- +name: María Alejandra Ulloa +country: co +website: +photo: +position: B.Sc. +started: 2020 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: ma-alejandra-ulloa +twitterusername: +githubusername: +interests: +position_after: Estudiante de Maestría +affiliation_after: KTH | Stockholm University | Karolinska Institute +country_after: se +--- \ No newline at end of file diff --git a/_team/es-co/maria_anotnia_madrid.md b/_team/es-co/maria_anotnia_madrid.md new file mode 100644 index 00000000..755c650b --- /dev/null +++ b/_team/es-co/maria_anotnia_madrid.md @@ -0,0 +1,29 @@ +--- +name: María Antonia Madrid +country: co +website: +photo: +position: B.Sc. +started: 2020 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0003-2383-6161 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: maria-antonia-madrid-restrepo +twitterusername: mariamadrid26 +githubusername: mariamadrid19 +interests: +position_after: Estudiante de Maestría +affiliation_after: KU Leuven +country_after: be +--- \ No newline at end of file diff --git a/_team/es-co/maria_fernanda_pena.md b/_team/es-co/maria_fernanda_pena.md new file mode 100644 index 00000000..c3bdaf16 --- /dev/null +++ b/_team/es-co/maria_fernanda_pena.md @@ -0,0 +1,30 @@ +--- +name: María Fernanda Peña +country: co +website: +photo: maria_fernanda_pena.jpg +position: Estudiante de Maestría [co-dirigida Diego Jiménez] +affiliation: Ciencias Biológicas +started: 2022 +ended: +number_educ: 1 +education1: B.Sc. en Biología, Universidad de Antioquía, Medellín, Colombia +education2: +education3: +education4: +email: mf.penav1@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: Ecología microbiana de suelos de manglar +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/maryam_chaib_demares.md b/_team/es-co/maryam_chaib_demares.md new file mode 100644 index 00000000..12ee8a7c --- /dev/null +++ b/_team/es-co/maryam_chaib_demares.md @@ -0,0 +1,29 @@ +--- +name: Maryam Chaib De Mares +country: co +website: +photo: +position: Postdoc +started: 2019 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: 0000-0002-3359-3258 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: maryamchaibdemares +twitterusername: +githubusername: +interests: +position_after: Profesora Asistente +affiliation_after: Universidad Nacional de Colombia +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/mauricio_pacheco.md b/_team/es-co/mauricio_pacheco.md new file mode 100644 index 00000000..5ad1cfae --- /dev/null +++ b/_team/es-co/mauricio_pacheco.md @@ -0,0 +1,22 @@ +--- +name: Mauricio Pacheco +country: co +website: +position: M.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Bioinformático +affiliation_after: Laboratorio de Salud Pública de la Secretaría de Salud de Bogotá +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/mauricio_rico.md b/_team/es-co/mauricio_rico.md new file mode 100644 index 00000000..07a49a76 --- /dev/null +++ b/_team/es-co/mauricio_rico.md @@ -0,0 +1,29 @@ +--- +name: E. Mauricio Rico +country: co +website: +photo: +position: M.Sc. +started: 2020 +ended: 2023 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: https://www.researchgate.net/profile/Edgar-Rico-Sierra +orcidusername: 0000-0003-4291-7119 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: Asistente de Investigación +affiliation_after: AGROSAVIA (Centro de Investigación Nataima) +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/member_template.md b/_team/es-co/member_template.md new file mode 100644 index 00000000..c6052513 --- /dev/null +++ b/_team/es-co/member_template.md @@ -0,0 +1,29 @@ +--- +name: +country: +website: +photo: +position: +affiliation: +started: +ended: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/miguel_parra.md b/_team/es-co/miguel_parra.md new file mode 100644 index 00000000..77a23930 --- /dev/null +++ b/_team/es-co/miguel_parra.md @@ -0,0 +1,22 @@ +--- +name: Miguel Parra +country: co +website: +position: Postdoc +started: 2016 +ended: 2018 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: Investigador asociadop +affiliation_after: Universidad del Bosque +country_after: co +--- \ No newline at end of file diff --git a/_team/es-co/nathalia_portilla.md b/_team/es-co/nathalia_portilla.md new file mode 100644 index 00000000..0ec86593 --- /dev/null +++ b/_team/es-co/nathalia_portilla.md @@ -0,0 +1,30 @@ +--- +name: Nathalia A. Portilla +country: co +website: +photo: nathalia_portilla.jpg +position: Estudiante de Maestría +affiliation: Biología Computacional +started: 2020 +ended: +number_educ: 1 +education1: B.Sc. en Microbiología, Universidad de los Andes, Bogotá, Colombia +education2: +education3: +education4: +email: mf.penav1@uniandes.edu.co +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: portillanath +interests: Phage taxonomy +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/nickole_villabona.md b/_team/es-co/nickole_villabona.md new file mode 100644 index 00000000..0a3d27aa --- /dev/null +++ b/_team/es-co/nickole_villabona.md @@ -0,0 +1,29 @@ +--- +name: Nickole Villabona +country: co +website: +photo: +position: B.Sc. +started: 2018 +ended: 2022 +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: odpyW8YAAAAJ&hl +resgateusername: +orcidusername: 0000-0001-5269-2270 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: nickole-villabona-b48357232 +twitterusername: +githubusername: +interests: +position_after: Estudiante Doctoral +affiliation_after: University of California, Irvine +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/pablo_cardenas.md b/_team/es-co/pablo_cardenas.md new file mode 100644 index 00000000..c0418a6c --- /dev/null +++ b/_team/es-co/pablo_cardenas.md @@ -0,0 +1,22 @@ +--- +name: Pablo Cárdenas +country: co +website: https://pablo-cardenas.com/ +position: B.Sc. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: Iu05ZuQAAAAJ +resgateusername: Pablo-Cardenas-R +orcidusername: 0000-0001-7015-0512 +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: pablocarderam +twitterusername: pcr_guy +githubusername: pablocarderam +position_after: Estudiante Doctoral +affiliation_after: MIT +country_after: us +--- \ No newline at end of file diff --git a/_team/es-co/ruth_hernandez.md b/_team/es-co/ruth_hernandez.md new file mode 100644 index 00000000..24e26749 --- /dev/null +++ b/_team/es-co/ruth_hernandez.md @@ -0,0 +1,22 @@ +--- +name: Ruth Hernández +country: co +website: +position: Ph.D. +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/santiago_melo.md b/_team/es-co/santiago_melo.md new file mode 100644 index 00000000..a7c0dd8b --- /dev/null +++ b/_team/es-co/santiago_melo.md @@ -0,0 +1,22 @@ +--- +name: Santiago Melo +country: co +website: +position: +started: 2000 +ended: 2010 +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/silvia_rodriguez.md b/_team/es-co/silvia_rodriguez.md new file mode 100644 index 00000000..758ce445 --- /dev/null +++ b/_team/es-co/silvia_rodriguez.md @@ -0,0 +1,30 @@ +--- +name: Silvia Rodríguez +country: co +website: +photo: bio_photo.jpg +position: Estudiante de Pregrado +affiliation: Biología +started: +ended: +number_educ: +education1: +education2: +education3: +education4: +email: +cv: +scholarusername: +resgateusername: +orcidusername: +publonsusername: +arxivusername: +biorxivusername: +linkedinusername: +twitterusername: +githubusername: +interests: +position_after: +affiliation_after: +country_after: +--- \ No newline at end of file diff --git a/_team/es-co/zaide_montes.md b/_team/es-co/zaide_montes.md new file mode 100644 index 00000000..f1eb73e8 --- /dev/null +++ b/_team/es-co/zaide_montes.md @@ -0,0 +1,11 @@ +--- +name: Zaide K. Montes Ortiz +country: co +position: B.Sc. & M.Sc. +orcidusername: +started: 2015 +ended: 2021 +position_after: Estudiante Doctoral +affiliation_after: Lund University | nGICE Max Planck Center +country_after: se +--- \ No newline at end of file diff --git a/assets/css/main.scss b/assets/css/main.scss index 087ba501..00e5c0e1 100644 --- a/assets/css/main.scss +++ b/assets/css/main.scss @@ -6,6 +6,7 @@ // Dimensions $max-content-width: {{ site.max_width }}; + @import "variables", "themes", diff --git a/assets/img/bcem_logo.png b/assets/img/bcem_logo.png new file mode 100755 index 00000000..42544364 Binary files /dev/null and b/assets/img/bcem_logo.png differ diff --git a/assets/img/bcem_logo2.png b/assets/img/bcem_logo2.png new file mode 100755 index 00000000..9c386674 Binary files /dev/null and b/assets/img/bcem_logo2.png differ diff --git a/assets/img/bcem_logo3.png b/assets/img/bcem_logo3.png new file mode 100644 index 00000000..28930d94 Binary files /dev/null and b/assets/img/bcem_logo3.png differ diff --git a/assets/img/bcem_logo_nt.png b/assets/img/bcem_logo_nt.png new file mode 100755 index 00000000..2fc89ce5 Binary files /dev/null and b/assets/img/bcem_logo_nt.png differ diff --git a/assets/img/flags/1x1/ad.svg b/assets/img/flags/1x1/ad.svg new file mode 100644 index 00000000..4bd91b72 --- /dev/null +++ b/assets/img/flags/1x1/ad.svg @@ -0,0 +1,148 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ae.svg b/assets/img/flags/1x1/ae.svg new file mode 100644 index 00000000..b59e1135 --- /dev/null +++ b/assets/img/flags/1x1/ae.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/af.svg b/assets/img/flags/1x1/af.svg new file mode 100644 index 00000000..0b7939c6 --- /dev/null +++ b/assets/img/flags/1x1/af.svg @@ -0,0 +1,81 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ag.svg b/assets/img/flags/1x1/ag.svg new file mode 100644 index 00000000..9b951b6a --- /dev/null +++ b/assets/img/flags/1x1/ag.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ai.svg b/assets/img/flags/1x1/ai.svg new file mode 100644 index 00000000..eeaebcf6 --- /dev/null +++ b/assets/img/flags/1x1/ai.svg @@ -0,0 +1,29 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/al.svg b/assets/img/flags/1x1/al.svg new file mode 100644 index 00000000..15ee8bbe --- /dev/null +++ b/assets/img/flags/1x1/al.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/am.svg b/assets/img/flags/1x1/am.svg new file mode 100644 index 00000000..a188adfe --- /dev/null +++ b/assets/img/flags/1x1/am.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/ao.svg b/assets/img/flags/1x1/ao.svg new file mode 100644 index 00000000..46d6600a --- /dev/null +++ b/assets/img/flags/1x1/ao.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/aq.svg b/assets/img/flags/1x1/aq.svg new file mode 100644 index 00000000..a4d9a201 --- /dev/null +++ b/assets/img/flags/1x1/aq.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/ar.svg b/assets/img/flags/1x1/ar.svg new file mode 100644 index 00000000..984d6ea6 --- /dev/null +++ b/assets/img/flags/1x1/ar.svg @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/arab.svg b/assets/img/flags/1x1/arab.svg new file mode 100644 index 00000000..841f11ad --- /dev/null +++ b/assets/img/flags/1x1/arab.svg @@ -0,0 +1,109 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/as.svg b/assets/img/flags/1x1/as.svg new file mode 100644 index 00000000..b0789e9c --- /dev/null +++ b/assets/img/flags/1x1/as.svg @@ -0,0 +1,73 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/at.svg b/assets/img/flags/1x1/at.svg new file mode 100644 index 00000000..758ced64 --- /dev/null +++ b/assets/img/flags/1x1/at.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/au.svg b/assets/img/flags/1x1/au.svg new file mode 100644 index 00000000..38bb2450 --- /dev/null +++ b/assets/img/flags/1x1/au.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/aw.svg b/assets/img/flags/1x1/aw.svg new file mode 100644 index 00000000..1f03d61a --- /dev/null +++ b/assets/img/flags/1x1/aw.svg @@ -0,0 +1,186 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ax.svg b/assets/img/flags/1x1/ax.svg new file mode 100644 index 00000000..481d2a33 --- /dev/null +++ b/assets/img/flags/1x1/ax.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/az.svg b/assets/img/flags/1x1/az.svg new file mode 100644 index 00000000..d692e225 --- /dev/null +++ b/assets/img/flags/1x1/az.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/ba.svg b/assets/img/flags/1x1/ba.svg new file mode 100644 index 00000000..456ca123 --- /dev/null +++ b/assets/img/flags/1x1/ba.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bb.svg b/assets/img/flags/1x1/bb.svg new file mode 100644 index 00000000..5af2bd03 --- /dev/null +++ b/assets/img/flags/1x1/bb.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/bd.svg b/assets/img/flags/1x1/bd.svg new file mode 100644 index 00000000..86fcfbab --- /dev/null +++ b/assets/img/flags/1x1/bd.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/be.svg b/assets/img/flags/1x1/be.svg new file mode 100644 index 00000000..31d6210c --- /dev/null +++ b/assets/img/flags/1x1/be.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/bf.svg b/assets/img/flags/1x1/bf.svg new file mode 100644 index 00000000..a5078df3 --- /dev/null +++ b/assets/img/flags/1x1/bf.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/bg.svg b/assets/img/flags/1x1/bg.svg new file mode 100644 index 00000000..78412c5d --- /dev/null +++ b/assets/img/flags/1x1/bg.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/bh.svg b/assets/img/flags/1x1/bh.svg new file mode 100644 index 00000000..2d131aa5 --- /dev/null +++ b/assets/img/flags/1x1/bh.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/bi.svg b/assets/img/flags/1x1/bi.svg new file mode 100644 index 00000000..36a0d3a6 --- /dev/null +++ b/assets/img/flags/1x1/bi.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bj.svg b/assets/img/flags/1x1/bj.svg new file mode 100644 index 00000000..bb27414c --- /dev/null +++ b/assets/img/flags/1x1/bj.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bl.svg b/assets/img/flags/1x1/bl.svg new file mode 100644 index 00000000..65550d93 --- /dev/null +++ b/assets/img/flags/1x1/bl.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/bm.svg b/assets/img/flags/1x1/bm.svg new file mode 100644 index 00000000..b4df1924 --- /dev/null +++ b/assets/img/flags/1x1/bm.svg @@ -0,0 +1,97 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bn.svg b/assets/img/flags/1x1/bn.svg new file mode 100644 index 00000000..b536651c --- /dev/null +++ b/assets/img/flags/1x1/bn.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bo.svg b/assets/img/flags/1x1/bo.svg new file mode 100644 index 00000000..b69b2308 --- /dev/null +++ b/assets/img/flags/1x1/bo.svg @@ -0,0 +1,674 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bq.svg b/assets/img/flags/1x1/bq.svg new file mode 100644 index 00000000..4b9168e1 --- /dev/null +++ b/assets/img/flags/1x1/bq.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/br.svg b/assets/img/flags/1x1/br.svg index ce8ce427..be62f6ff 100644 --- a/assets/img/flags/1x1/br.svg +++ b/assets/img/flags/1x1/br.svg @@ -7,7 +7,7 @@ - + @@ -42,4 +42,4 @@ - \ No newline at end of file + diff --git a/assets/img/flags/1x1/bs.svg b/assets/img/flags/1x1/bs.svg new file mode 100644 index 00000000..0faa4bba --- /dev/null +++ b/assets/img/flags/1x1/bs.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bt.svg b/assets/img/flags/1x1/bt.svg new file mode 100644 index 00000000..81f6788c --- /dev/null +++ b/assets/img/flags/1x1/bt.svg @@ -0,0 +1,89 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bv.svg b/assets/img/flags/1x1/bv.svg new file mode 100644 index 00000000..dcc6ad10 --- /dev/null +++ b/assets/img/flags/1x1/bv.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bw.svg b/assets/img/flags/1x1/bw.svg new file mode 100644 index 00000000..328e13c1 --- /dev/null +++ b/assets/img/flags/1x1/bw.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/by.svg b/assets/img/flags/1x1/by.svg new file mode 100644 index 00000000..ab7984dc --- /dev/null +++ b/assets/img/flags/1x1/by.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/bz.svg b/assets/img/flags/1x1/bz.svg new file mode 100644 index 00000000..e99106a5 --- /dev/null +++ b/assets/img/flags/1x1/bz.svg @@ -0,0 +1,145 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ca.svg b/assets/img/flags/1x1/ca.svg new file mode 100644 index 00000000..84cde348 --- /dev/null +++ b/assets/img/flags/1x1/ca.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/cc.svg b/assets/img/flags/1x1/cc.svg new file mode 100644 index 00000000..f6c1755c --- /dev/null +++ b/assets/img/flags/1x1/cc.svg @@ -0,0 +1,19 @@ + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cd.svg b/assets/img/flags/1x1/cd.svg new file mode 100644 index 00000000..ea177287 --- /dev/null +++ b/assets/img/flags/1x1/cd.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cefta.svg b/assets/img/flags/1x1/cefta.svg new file mode 100644 index 00000000..ff1a19bb --- /dev/null +++ b/assets/img/flags/1x1/cefta.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cf.svg b/assets/img/flags/1x1/cf.svg new file mode 100644 index 00000000..b0625db7 --- /dev/null +++ b/assets/img/flags/1x1/cf.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cg.svg b/assets/img/flags/1x1/cg.svg new file mode 100644 index 00000000..f7868842 --- /dev/null +++ b/assets/img/flags/1x1/cg.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ch.svg b/assets/img/flags/1x1/ch.svg new file mode 100644 index 00000000..52578bfd --- /dev/null +++ b/assets/img/flags/1x1/ch.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/ci.svg b/assets/img/flags/1x1/ci.svg new file mode 100644 index 00000000..2abf6411 --- /dev/null +++ b/assets/img/flags/1x1/ci.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/ck.svg b/assets/img/flags/1x1/ck.svg new file mode 100644 index 00000000..43a10576 --- /dev/null +++ b/assets/img/flags/1x1/ck.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/cl.svg b/assets/img/flags/1x1/cl.svg new file mode 100644 index 00000000..5fb6096b --- /dev/null +++ b/assets/img/flags/1x1/cl.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cm.svg b/assets/img/flags/1x1/cm.svg new file mode 100644 index 00000000..ed4952b4 --- /dev/null +++ b/assets/img/flags/1x1/cm.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cn.svg b/assets/img/flags/1x1/cn.svg new file mode 100644 index 00000000..e152f016 --- /dev/null +++ b/assets/img/flags/1x1/cn.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/co.svg b/assets/img/flags/1x1/co.svg new file mode 100644 index 00000000..5804bfe4 --- /dev/null +++ b/assets/img/flags/1x1/co.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/cp.svg b/assets/img/flags/1x1/cp.svg new file mode 100644 index 00000000..ea3bfdcb --- /dev/null +++ b/assets/img/flags/1x1/cp.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/cr.svg b/assets/img/flags/1x1/cr.svg new file mode 100644 index 00000000..4e7889e2 --- /dev/null +++ b/assets/img/flags/1x1/cr.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/cu.svg b/assets/img/flags/1x1/cu.svg new file mode 100644 index 00000000..a2849023 --- /dev/null +++ b/assets/img/flags/1x1/cu.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cv.svg b/assets/img/flags/1x1/cv.svg new file mode 100644 index 00000000..1170cd76 --- /dev/null +++ b/assets/img/flags/1x1/cv.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cw.svg b/assets/img/flags/1x1/cw.svg new file mode 100644 index 00000000..57062aba --- /dev/null +++ b/assets/img/flags/1x1/cw.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cx.svg b/assets/img/flags/1x1/cx.svg new file mode 100644 index 00000000..f14536f0 --- /dev/null +++ b/assets/img/flags/1x1/cx.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/cy.svg b/assets/img/flags/1x1/cy.svg new file mode 100644 index 00000000..39a87c87 --- /dev/null +++ b/assets/img/flags/1x1/cy.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/cz.svg b/assets/img/flags/1x1/cz.svg new file mode 100644 index 00000000..dcd0a6b1 --- /dev/null +++ b/assets/img/flags/1x1/cz.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/de.svg b/assets/img/flags/1x1/de.svg new file mode 100644 index 00000000..05a0a69a --- /dev/null +++ b/assets/img/flags/1x1/de.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/dg.svg b/assets/img/flags/1x1/dg.svg new file mode 100644 index 00000000..0b8baf14 --- /dev/null +++ b/assets/img/flags/1x1/dg.svg @@ -0,0 +1,130 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/dj.svg b/assets/img/flags/1x1/dj.svg new file mode 100644 index 00000000..f5534d2a --- /dev/null +++ b/assets/img/flags/1x1/dj.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/dk.svg b/assets/img/flags/1x1/dk.svg new file mode 100644 index 00000000..5aaaa190 --- /dev/null +++ b/assets/img/flags/1x1/dk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/dm.svg b/assets/img/flags/1x1/dm.svg new file mode 100644 index 00000000..6f8f3664 --- /dev/null +++ b/assets/img/flags/1x1/dm.svg @@ -0,0 +1,152 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/do.svg b/assets/img/flags/1x1/do.svg new file mode 100644 index 00000000..867e12d1 --- /dev/null +++ b/assets/img/flags/1x1/do.svg @@ -0,0 +1,123 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/dz.svg b/assets/img/flags/1x1/dz.svg new file mode 100644 index 00000000..8abcd258 --- /dev/null +++ b/assets/img/flags/1x1/dz.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/eac.svg b/assets/img/flags/1x1/eac.svg new file mode 100644 index 00000000..385fe9d6 --- /dev/null +++ b/assets/img/flags/1x1/eac.svg @@ -0,0 +1,48 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ec.svg b/assets/img/flags/1x1/ec.svg new file mode 100644 index 00000000..9545c5dd --- /dev/null +++ b/assets/img/flags/1x1/ec.svg @@ -0,0 +1,138 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ee.svg b/assets/img/flags/1x1/ee.svg new file mode 100644 index 00000000..5a6a7e37 --- /dev/null +++ b/assets/img/flags/1x1/ee.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/eg.svg b/assets/img/flags/1x1/eg.svg new file mode 100644 index 00000000..3ef77112 --- /dev/null +++ b/assets/img/flags/1x1/eg.svg @@ -0,0 +1,38 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/eh.svg b/assets/img/flags/1x1/eh.svg new file mode 100644 index 00000000..ae509fa8 --- /dev/null +++ b/assets/img/flags/1x1/eh.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/er.svg b/assets/img/flags/1x1/er.svg new file mode 100644 index 00000000..0f140e09 --- /dev/null +++ b/assets/img/flags/1x1/er.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/es-ct.svg b/assets/img/flags/1x1/es-ct.svg new file mode 100644 index 00000000..a06a2e3d --- /dev/null +++ b/assets/img/flags/1x1/es-ct.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/es-ga.svg b/assets/img/flags/1x1/es-ga.svg new file mode 100644 index 00000000..2fecfa09 --- /dev/null +++ b/assets/img/flags/1x1/es-ga.svg @@ -0,0 +1,187 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/es-pv.svg b/assets/img/flags/1x1/es-pv.svg new file mode 100644 index 00000000..7d383ed5 --- /dev/null +++ b/assets/img/flags/1x1/es-pv.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/es.svg b/assets/img/flags/1x1/es.svg new file mode 100644 index 00000000..0e6338fa --- /dev/null +++ b/assets/img/flags/1x1/es.svg @@ -0,0 +1,547 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/et.svg b/assets/img/flags/1x1/et.svg new file mode 100644 index 00000000..eb7f3c42 --- /dev/null +++ b/assets/img/flags/1x1/et.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/eu.svg b/assets/img/flags/1x1/eu.svg new file mode 100644 index 00000000..4a07fbe5 --- /dev/null +++ b/assets/img/flags/1x1/eu.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/fi.svg b/assets/img/flags/1x1/fi.svg new file mode 100644 index 00000000..aba2ef3b --- /dev/null +++ b/assets/img/flags/1x1/fi.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/fj.svg b/assets/img/flags/1x1/fj.svg new file mode 100644 index 00000000..7a1cade2 --- /dev/null +++ b/assets/img/flags/1x1/fj.svg @@ -0,0 +1,123 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/fk.svg b/assets/img/flags/1x1/fk.svg new file mode 100644 index 00000000..21e654f2 --- /dev/null +++ b/assets/img/flags/1x1/fk.svg @@ -0,0 +1,89 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/fm.svg b/assets/img/flags/1x1/fm.svg new file mode 100644 index 00000000..4f7d3132 --- /dev/null +++ b/assets/img/flags/1x1/fm.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/fo.svg b/assets/img/flags/1x1/fo.svg new file mode 100644 index 00000000..eec99458 --- /dev/null +++ b/assets/img/flags/1x1/fo.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/fr.svg b/assets/img/flags/1x1/fr.svg new file mode 100644 index 00000000..0f60170f --- /dev/null +++ b/assets/img/flags/1x1/fr.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/ga.svg b/assets/img/flags/1x1/ga.svg new file mode 100644 index 00000000..113a5b58 --- /dev/null +++ b/assets/img/flags/1x1/ga.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/gb-eng.svg b/assets/img/flags/1x1/gb-eng.svg new file mode 100644 index 00000000..ee48fed9 --- /dev/null +++ b/assets/img/flags/1x1/gb-eng.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/gb-nir.svg b/assets/img/flags/1x1/gb-nir.svg new file mode 100644 index 00000000..77a91f07 --- /dev/null +++ b/assets/img/flags/1x1/gb-nir.svg @@ -0,0 +1,131 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gb-sct.svg b/assets/img/flags/1x1/gb-sct.svg new file mode 100644 index 00000000..44d38cc1 --- /dev/null +++ b/assets/img/flags/1x1/gb-sct.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/gb-wls.svg b/assets/img/flags/1x1/gb-wls.svg new file mode 100644 index 00000000..31268824 --- /dev/null +++ b/assets/img/flags/1x1/gb-wls.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/gb.svg b/assets/img/flags/1x1/gb.svg new file mode 100644 index 00000000..ce4d1e00 --- /dev/null +++ b/assets/img/flags/1x1/gb.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/gd.svg b/assets/img/flags/1x1/gd.svg new file mode 100644 index 00000000..c3b2cef5 --- /dev/null +++ b/assets/img/flags/1x1/gd.svg @@ -0,0 +1,27 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ge.svg b/assets/img/flags/1x1/ge.svg new file mode 100644 index 00000000..53b709fc --- /dev/null +++ b/assets/img/flags/1x1/ge.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/gf.svg b/assets/img/flags/1x1/gf.svg new file mode 100644 index 00000000..9cf5aa2b --- /dev/null +++ b/assets/img/flags/1x1/gf.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/gg.svg b/assets/img/flags/1x1/gg.svg new file mode 100644 index 00000000..480f5503 --- /dev/null +++ b/assets/img/flags/1x1/gg.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/gh.svg b/assets/img/flags/1x1/gh.svg new file mode 100644 index 00000000..a64271b8 --- /dev/null +++ b/assets/img/flags/1x1/gh.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/gi.svg b/assets/img/flags/1x1/gi.svg new file mode 100644 index 00000000..7b26bb2e --- /dev/null +++ b/assets/img/flags/1x1/gi.svg @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gl.svg b/assets/img/flags/1x1/gl.svg new file mode 100644 index 00000000..eaa817b1 --- /dev/null +++ b/assets/img/flags/1x1/gl.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/gm.svg b/assets/img/flags/1x1/gm.svg new file mode 100644 index 00000000..2a8f7244 --- /dev/null +++ b/assets/img/flags/1x1/gm.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/gn.svg b/assets/img/flags/1x1/gn.svg new file mode 100644 index 00000000..ae81f9d7 --- /dev/null +++ b/assets/img/flags/1x1/gn.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/gp.svg b/assets/img/flags/1x1/gp.svg new file mode 100644 index 00000000..9dd8e3bb --- /dev/null +++ b/assets/img/flags/1x1/gp.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/gq.svg b/assets/img/flags/1x1/gq.svg new file mode 100644 index 00000000..5fd7b6a1 --- /dev/null +++ b/assets/img/flags/1x1/gq.svg @@ -0,0 +1,23 @@ + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gr.svg b/assets/img/flags/1x1/gr.svg new file mode 100644 index 00000000..a2688303 --- /dev/null +++ b/assets/img/flags/1x1/gr.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gs.svg b/assets/img/flags/1x1/gs.svg new file mode 100644 index 00000000..1db72cff --- /dev/null +++ b/assets/img/flags/1x1/gs.svg @@ -0,0 +1,132 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gt.svg b/assets/img/flags/1x1/gt.svg new file mode 100644 index 00000000..97ea6aa5 --- /dev/null +++ b/assets/img/flags/1x1/gt.svg @@ -0,0 +1,204 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gu.svg b/assets/img/flags/1x1/gu.svg new file mode 100644 index 00000000..57024874 --- /dev/null +++ b/assets/img/flags/1x1/gu.svg @@ -0,0 +1,23 @@ + + + + + + + + + + G + U + A + M + + + + + + + + + + diff --git a/assets/img/flags/1x1/gw.svg b/assets/img/flags/1x1/gw.svg new file mode 100644 index 00000000..61a05481 --- /dev/null +++ b/assets/img/flags/1x1/gw.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/gy.svg b/assets/img/flags/1x1/gy.svg new file mode 100644 index 00000000..35e2f08b --- /dev/null +++ b/assets/img/flags/1x1/gy.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/hk.svg b/assets/img/flags/1x1/hk.svg new file mode 100644 index 00000000..eef02a18 --- /dev/null +++ b/assets/img/flags/1x1/hk.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/hm.svg b/assets/img/flags/1x1/hm.svg new file mode 100644 index 00000000..1f4d0070 --- /dev/null +++ b/assets/img/flags/1x1/hm.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/hn.svg b/assets/img/flags/1x1/hn.svg new file mode 100644 index 00000000..847df20c --- /dev/null +++ b/assets/img/flags/1x1/hn.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/hr.svg b/assets/img/flags/1x1/hr.svg new file mode 100644 index 00000000..91009eb7 --- /dev/null +++ b/assets/img/flags/1x1/hr.svg @@ -0,0 +1,56 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ht.svg b/assets/img/flags/1x1/ht.svg new file mode 100644 index 00000000..a61736cd --- /dev/null +++ b/assets/img/flags/1x1/ht.svg @@ -0,0 +1,116 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/hu.svg b/assets/img/flags/1x1/hu.svg new file mode 100644 index 00000000..088242d9 --- /dev/null +++ b/assets/img/flags/1x1/hu.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/ic.svg b/assets/img/flags/1x1/ic.svg new file mode 100644 index 00000000..096603d4 --- /dev/null +++ b/assets/img/flags/1x1/ic.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/id.svg b/assets/img/flags/1x1/id.svg new file mode 100644 index 00000000..df080181 --- /dev/null +++ b/assets/img/flags/1x1/id.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/ie.svg b/assets/img/flags/1x1/ie.svg new file mode 100644 index 00000000..e13de22d --- /dev/null +++ b/assets/img/flags/1x1/ie.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/il.svg b/assets/img/flags/1x1/il.svg new file mode 100644 index 00000000..0a2a6d99 --- /dev/null +++ b/assets/img/flags/1x1/il.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/im.svg b/assets/img/flags/1x1/im.svg new file mode 100644 index 00000000..cff1c4b2 --- /dev/null +++ b/assets/img/flags/1x1/im.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/in.svg b/assets/img/flags/1x1/in.svg new file mode 100644 index 00000000..26a02cff --- /dev/null +++ b/assets/img/flags/1x1/in.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/io.svg b/assets/img/flags/1x1/io.svg new file mode 100644 index 00000000..6f1a8ca2 --- /dev/null +++ b/assets/img/flags/1x1/io.svg @@ -0,0 +1,130 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/iq.svg b/assets/img/flags/1x1/iq.svg new file mode 100644 index 00000000..a64456d4 --- /dev/null +++ b/assets/img/flags/1x1/iq.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/1x1/ir.svg b/assets/img/flags/1x1/ir.svg new file mode 100644 index 00000000..095d9717 --- /dev/null +++ b/assets/img/flags/1x1/ir.svg @@ -0,0 +1,219 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/is.svg b/assets/img/flags/1x1/is.svg new file mode 100644 index 00000000..26510b99 --- /dev/null +++ b/assets/img/flags/1x1/is.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/it.svg b/assets/img/flags/1x1/it.svg new file mode 100644 index 00000000..b9596d05 --- /dev/null +++ b/assets/img/flags/1x1/it.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/je.svg b/assets/img/flags/1x1/je.svg new file mode 100644 index 00000000..8a9fdd57 --- /dev/null +++ b/assets/img/flags/1x1/je.svg @@ -0,0 +1,62 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/jm.svg b/assets/img/flags/1x1/jm.svg new file mode 100644 index 00000000..07f023c7 --- /dev/null +++ b/assets/img/flags/1x1/jm.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/jo.svg b/assets/img/flags/1x1/jo.svg new file mode 100644 index 00000000..fbbd6810 --- /dev/null +++ b/assets/img/flags/1x1/jo.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/jp.svg b/assets/img/flags/1x1/jp.svg new file mode 100644 index 00000000..118686a0 --- /dev/null +++ b/assets/img/flags/1x1/jp.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ke.svg b/assets/img/flags/1x1/ke.svg new file mode 100644 index 00000000..110600ec --- /dev/null +++ b/assets/img/flags/1x1/ke.svg @@ -0,0 +1,23 @@ + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kg.svg b/assets/img/flags/1x1/kg.svg new file mode 100644 index 00000000..2ab176a3 --- /dev/null +++ b/assets/img/flags/1x1/kg.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kh.svg b/assets/img/flags/1x1/kh.svg new file mode 100644 index 00000000..4b63b327 --- /dev/null +++ b/assets/img/flags/1x1/kh.svg @@ -0,0 +1,61 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ki.svg b/assets/img/flags/1x1/ki.svg new file mode 100644 index 00000000..14dab153 --- /dev/null +++ b/assets/img/flags/1x1/ki.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/km.svg b/assets/img/flags/1x1/km.svg new file mode 100644 index 00000000..d9b77511 --- /dev/null +++ b/assets/img/flags/1x1/km.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kn.svg b/assets/img/flags/1x1/kn.svg new file mode 100644 index 00000000..42d5adfe --- /dev/null +++ b/assets/img/flags/1x1/kn.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kp.svg b/assets/img/flags/1x1/kp.svg new file mode 100644 index 00000000..25393040 --- /dev/null +++ b/assets/img/flags/1x1/kp.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kr.svg b/assets/img/flags/1x1/kr.svg new file mode 100644 index 00000000..af3d35eb --- /dev/null +++ b/assets/img/flags/1x1/kr.svg @@ -0,0 +1,17 @@ + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kw.svg b/assets/img/flags/1x1/kw.svg new file mode 100644 index 00000000..b2fe54fa --- /dev/null +++ b/assets/img/flags/1x1/kw.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ky.svg b/assets/img/flags/1x1/ky.svg new file mode 100644 index 00000000..e55d5207 --- /dev/null +++ b/assets/img/flags/1x1/ky.svg @@ -0,0 +1,103 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/kz.svg b/assets/img/flags/1x1/kz.svg new file mode 100644 index 00000000..f9f9b98f --- /dev/null +++ b/assets/img/flags/1x1/kz.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/la.svg b/assets/img/flags/1x1/la.svg new file mode 100644 index 00000000..af70d0dc --- /dev/null +++ b/assets/img/flags/1x1/la.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/lb.svg b/assets/img/flags/1x1/lb.svg new file mode 100644 index 00000000..65201091 --- /dev/null +++ b/assets/img/flags/1x1/lb.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/lc.svg b/assets/img/flags/1x1/lc.svg new file mode 100644 index 00000000..aa18fac8 --- /dev/null +++ b/assets/img/flags/1x1/lc.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/li.svg b/assets/img/flags/1x1/li.svg new file mode 100644 index 00000000..bf818102 --- /dev/null +++ b/assets/img/flags/1x1/li.svg @@ -0,0 +1,43 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/lk.svg b/assets/img/flags/1x1/lk.svg new file mode 100644 index 00000000..08212a5b --- /dev/null +++ b/assets/img/flags/1x1/lk.svg @@ -0,0 +1,22 @@ + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/lr.svg b/assets/img/flags/1x1/lr.svg new file mode 100644 index 00000000..74382abb --- /dev/null +++ b/assets/img/flags/1x1/lr.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ls.svg b/assets/img/flags/1x1/ls.svg new file mode 100644 index 00000000..605c087a --- /dev/null +++ b/assets/img/flags/1x1/ls.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/lt.svg b/assets/img/flags/1x1/lt.svg new file mode 100644 index 00000000..52ada948 --- /dev/null +++ b/assets/img/flags/1x1/lt.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/lu.svg b/assets/img/flags/1x1/lu.svg new file mode 100644 index 00000000..037c3152 --- /dev/null +++ b/assets/img/flags/1x1/lu.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/lv.svg b/assets/img/flags/1x1/lv.svg new file mode 100644 index 00000000..5af883c7 --- /dev/null +++ b/assets/img/flags/1x1/lv.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/ly.svg b/assets/img/flags/1x1/ly.svg new file mode 100644 index 00000000..4375a9ea --- /dev/null +++ b/assets/img/flags/1x1/ly.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ma.svg b/assets/img/flags/1x1/ma.svg new file mode 100644 index 00000000..80416672 --- /dev/null +++ b/assets/img/flags/1x1/ma.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/mc.svg b/assets/img/flags/1x1/mc.svg new file mode 100644 index 00000000..04173a41 --- /dev/null +++ b/assets/img/flags/1x1/mc.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/md.svg b/assets/img/flags/1x1/md.svg new file mode 100644 index 00000000..18a77ea9 --- /dev/null +++ b/assets/img/flags/1x1/md.svg @@ -0,0 +1,71 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/me.svg b/assets/img/flags/1x1/me.svg new file mode 100644 index 00000000..37e96b00 --- /dev/null +++ b/assets/img/flags/1x1/me.svg @@ -0,0 +1,118 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mf.svg b/assets/img/flags/1x1/mf.svg new file mode 100644 index 00000000..8d3285b8 --- /dev/null +++ b/assets/img/flags/1x1/mf.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/mg.svg b/assets/img/flags/1x1/mg.svg new file mode 100644 index 00000000..4f901cad --- /dev/null +++ b/assets/img/flags/1x1/mg.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/mh.svg b/assets/img/flags/1x1/mh.svg new file mode 100644 index 00000000..1db268d2 --- /dev/null +++ b/assets/img/flags/1x1/mh.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/mk.svg b/assets/img/flags/1x1/mk.svg new file mode 100644 index 00000000..0ee923a3 --- /dev/null +++ b/assets/img/flags/1x1/mk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/ml.svg b/assets/img/flags/1x1/ml.svg new file mode 100644 index 00000000..665d6b24 --- /dev/null +++ b/assets/img/flags/1x1/ml.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/mm.svg b/assets/img/flags/1x1/mm.svg new file mode 100644 index 00000000..391f0c70 --- /dev/null +++ b/assets/img/flags/1x1/mm.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/1x1/mn.svg b/assets/img/flags/1x1/mn.svg new file mode 100644 index 00000000..998fe5ce --- /dev/null +++ b/assets/img/flags/1x1/mn.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mo.svg b/assets/img/flags/1x1/mo.svg new file mode 100644 index 00000000..bd5cbcd9 --- /dev/null +++ b/assets/img/flags/1x1/mo.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/mp.svg b/assets/img/flags/1x1/mp.svg new file mode 100644 index 00000000..6179fb7d --- /dev/null +++ b/assets/img/flags/1x1/mp.svg @@ -0,0 +1,86 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mq.svg b/assets/img/flags/1x1/mq.svg new file mode 100644 index 00000000..dcf00544 --- /dev/null +++ b/assets/img/flags/1x1/mq.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/mr.svg b/assets/img/flags/1x1/mr.svg new file mode 100644 index 00000000..ffe8c114 --- /dev/null +++ b/assets/img/flags/1x1/mr.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/ms.svg b/assets/img/flags/1x1/ms.svg new file mode 100644 index 00000000..c06dfccf --- /dev/null +++ b/assets/img/flags/1x1/ms.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mt.svg b/assets/img/flags/1x1/mt.svg new file mode 100644 index 00000000..f5343156 --- /dev/null +++ b/assets/img/flags/1x1/mt.svg @@ -0,0 +1,56 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mu.svg b/assets/img/flags/1x1/mu.svg new file mode 100644 index 00000000..2afe1d38 --- /dev/null +++ b/assets/img/flags/1x1/mu.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/mv.svg b/assets/img/flags/1x1/mv.svg new file mode 100644 index 00000000..c9a6c5bc --- /dev/null +++ b/assets/img/flags/1x1/mv.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/mw.svg b/assets/img/flags/1x1/mw.svg new file mode 100644 index 00000000..25bbf2ef --- /dev/null +++ b/assets/img/flags/1x1/mw.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mx.svg b/assets/img/flags/1x1/mx.svg new file mode 100644 index 00000000..bb991c17 --- /dev/null +++ b/assets/img/flags/1x1/mx.svg @@ -0,0 +1,377 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/my.svg b/assets/img/flags/1x1/my.svg new file mode 100644 index 00000000..b10f76e6 --- /dev/null +++ b/assets/img/flags/1x1/my.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/mz.svg b/assets/img/flags/1x1/mz.svg new file mode 100644 index 00000000..bb751482 --- /dev/null +++ b/assets/img/flags/1x1/mz.svg @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/na.svg b/assets/img/flags/1x1/na.svg new file mode 100644 index 00000000..36ac8d77 --- /dev/null +++ b/assets/img/flags/1x1/na.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/nc.svg b/assets/img/flags/1x1/nc.svg new file mode 100644 index 00000000..1cc81eb0 --- /dev/null +++ b/assets/img/flags/1x1/nc.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ne.svg b/assets/img/flags/1x1/ne.svg new file mode 100644 index 00000000..a96b027a --- /dev/null +++ b/assets/img/flags/1x1/ne.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/nf.svg b/assets/img/flags/1x1/nf.svg new file mode 100644 index 00000000..d9be1566 --- /dev/null +++ b/assets/img/flags/1x1/nf.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ng.svg b/assets/img/flags/1x1/ng.svg new file mode 100644 index 00000000..62813e86 --- /dev/null +++ b/assets/img/flags/1x1/ng.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/ni.svg b/assets/img/flags/1x1/ni.svg new file mode 100644 index 00000000..847f3312 --- /dev/null +++ b/assets/img/flags/1x1/ni.svg @@ -0,0 +1,129 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/nl.svg b/assets/img/flags/1x1/nl.svg new file mode 100644 index 00000000..49ca5bc0 --- /dev/null +++ b/assets/img/flags/1x1/nl.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/no.svg b/assets/img/flags/1x1/no.svg new file mode 100644 index 00000000..939920d4 --- /dev/null +++ b/assets/img/flags/1x1/no.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/np.svg b/assets/img/flags/1x1/np.svg new file mode 100644 index 00000000..498a1000 --- /dev/null +++ b/assets/img/flags/1x1/np.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/nr.svg b/assets/img/flags/1x1/nr.svg new file mode 100644 index 00000000..c8c827e7 --- /dev/null +++ b/assets/img/flags/1x1/nr.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/nu.svg b/assets/img/flags/1x1/nu.svg new file mode 100644 index 00000000..ce316723 --- /dev/null +++ b/assets/img/flags/1x1/nu.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/1x1/nz.svg b/assets/img/flags/1x1/nz.svg new file mode 100644 index 00000000..ee617d6f --- /dev/null +++ b/assets/img/flags/1x1/nz.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/om.svg b/assets/img/flags/1x1/om.svg new file mode 100644 index 00000000..2021f938 --- /dev/null +++ b/assets/img/flags/1x1/om.svg @@ -0,0 +1,115 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pa.svg b/assets/img/flags/1x1/pa.svg new file mode 100644 index 00000000..108c40bf --- /dev/null +++ b/assets/img/flags/1x1/pa.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pc.svg b/assets/img/flags/1x1/pc.svg new file mode 100644 index 00000000..a38dd212 --- /dev/null +++ b/assets/img/flags/1x1/pc.svg @@ -0,0 +1,33 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pe.svg b/assets/img/flags/1x1/pe.svg new file mode 100644 index 00000000..9ba4c612 --- /dev/null +++ b/assets/img/flags/1x1/pe.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/pf.svg b/assets/img/flags/1x1/pf.svg new file mode 100644 index 00000000..92b2803c --- /dev/null +++ b/assets/img/flags/1x1/pf.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pg.svg b/assets/img/flags/1x1/pg.svg new file mode 100644 index 00000000..8c8a2b8e --- /dev/null +++ b/assets/img/flags/1x1/pg.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ph.svg b/assets/img/flags/1x1/ph.svg new file mode 100644 index 00000000..7ae39fec --- /dev/null +++ b/assets/img/flags/1x1/ph.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/pk.svg b/assets/img/flags/1x1/pk.svg new file mode 100644 index 00000000..e71cd926 --- /dev/null +++ b/assets/img/flags/1x1/pk.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pl.svg b/assets/img/flags/1x1/pl.svg new file mode 100644 index 00000000..8c43577b --- /dev/null +++ b/assets/img/flags/1x1/pl.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/pm.svg b/assets/img/flags/1x1/pm.svg new file mode 100644 index 00000000..950c6e8c --- /dev/null +++ b/assets/img/flags/1x1/pm.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/pn.svg b/assets/img/flags/1x1/pn.svg new file mode 100644 index 00000000..0bae95e0 --- /dev/null +++ b/assets/img/flags/1x1/pn.svg @@ -0,0 +1,53 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pr.svg b/assets/img/flags/1x1/pr.svg new file mode 100644 index 00000000..eb302ad4 --- /dev/null +++ b/assets/img/flags/1x1/pr.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ps.svg b/assets/img/flags/1x1/ps.svg new file mode 100644 index 00000000..2c10079c --- /dev/null +++ b/assets/img/flags/1x1/ps.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pt.svg b/assets/img/flags/1x1/pt.svg new file mode 100644 index 00000000..95ad6d79 --- /dev/null +++ b/assets/img/flags/1x1/pt.svg @@ -0,0 +1,57 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/pw.svg b/assets/img/flags/1x1/pw.svg new file mode 100644 index 00000000..ef6be798 --- /dev/null +++ b/assets/img/flags/1x1/pw.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/py.svg b/assets/img/flags/1x1/py.svg new file mode 100644 index 00000000..e7e1bced --- /dev/null +++ b/assets/img/flags/1x1/py.svg @@ -0,0 +1,156 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/qa.svg b/assets/img/flags/1x1/qa.svg new file mode 100644 index 00000000..897a21bc --- /dev/null +++ b/assets/img/flags/1x1/qa.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/re.svg b/assets/img/flags/1x1/re.svg new file mode 100644 index 00000000..41d87d93 --- /dev/null +++ b/assets/img/flags/1x1/re.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/ro.svg b/assets/img/flags/1x1/ro.svg new file mode 100644 index 00000000..e6cf0f6e --- /dev/null +++ b/assets/img/flags/1x1/ro.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/rs.svg b/assets/img/flags/1x1/rs.svg new file mode 100644 index 00000000..d10ebb3e --- /dev/null +++ b/assets/img/flags/1x1/rs.svg @@ -0,0 +1,296 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ru.svg b/assets/img/flags/1x1/ru.svg new file mode 100644 index 00000000..f428b0cc --- /dev/null +++ b/assets/img/flags/1x1/ru.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/rw.svg b/assets/img/flags/1x1/rw.svg new file mode 100644 index 00000000..3d484fd9 --- /dev/null +++ b/assets/img/flags/1x1/rw.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sa.svg b/assets/img/flags/1x1/sa.svg new file mode 100644 index 00000000..fd6418ee --- /dev/null +++ b/assets/img/flags/1x1/sa.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sb.svg b/assets/img/flags/1x1/sb.svg new file mode 100644 index 00000000..398c7084 --- /dev/null +++ b/assets/img/flags/1x1/sb.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sc.svg b/assets/img/flags/1x1/sc.svg new file mode 100644 index 00000000..2996bac4 --- /dev/null +++ b/assets/img/flags/1x1/sc.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/sd.svg b/assets/img/flags/1x1/sd.svg new file mode 100644 index 00000000..0b9abdc8 --- /dev/null +++ b/assets/img/flags/1x1/sd.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/se.svg b/assets/img/flags/1x1/se.svg new file mode 100644 index 00000000..8f3f134d --- /dev/null +++ b/assets/img/flags/1x1/se.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/sg.svg b/assets/img/flags/1x1/sg.svg new file mode 100644 index 00000000..60625e97 --- /dev/null +++ b/assets/img/flags/1x1/sg.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sh-ac.svg b/assets/img/flags/1x1/sh-ac.svg new file mode 100644 index 00000000..85cd9d1c --- /dev/null +++ b/assets/img/flags/1x1/sh-ac.svg @@ -0,0 +1,690 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sh-hl.svg b/assets/img/flags/1x1/sh-hl.svg new file mode 100644 index 00000000..4cb19904 --- /dev/null +++ b/assets/img/flags/1x1/sh-hl.svg @@ -0,0 +1,164 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sh-ta.svg b/assets/img/flags/1x1/sh-ta.svg new file mode 100644 index 00000000..7933fc21 --- /dev/null +++ b/assets/img/flags/1x1/sh-ta.svg @@ -0,0 +1,76 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sh.svg b/assets/img/flags/1x1/sh.svg new file mode 100644 index 00000000..2fd37275 --- /dev/null +++ b/assets/img/flags/1x1/sh.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/si.svg b/assets/img/flags/1x1/si.svg new file mode 100644 index 00000000..33a03c62 --- /dev/null +++ b/assets/img/flags/1x1/si.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sj.svg b/assets/img/flags/1x1/sj.svg new file mode 100644 index 00000000..ecb9c796 --- /dev/null +++ b/assets/img/flags/1x1/sj.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/sk.svg b/assets/img/flags/1x1/sk.svg new file mode 100644 index 00000000..d1868226 --- /dev/null +++ b/assets/img/flags/1x1/sk.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/sl.svg b/assets/img/flags/1x1/sl.svg new file mode 100644 index 00000000..b649f1bd --- /dev/null +++ b/assets/img/flags/1x1/sl.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sm.svg b/assets/img/flags/1x1/sm.svg new file mode 100644 index 00000000..30c24901 --- /dev/null +++ b/assets/img/flags/1x1/sm.svg @@ -0,0 +1,73 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sn.svg b/assets/img/flags/1x1/sn.svg new file mode 100644 index 00000000..ff9cf2eb --- /dev/null +++ b/assets/img/flags/1x1/sn.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/so.svg b/assets/img/flags/1x1/so.svg new file mode 100644 index 00000000..4848dbe0 --- /dev/null +++ b/assets/img/flags/1x1/so.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sr.svg b/assets/img/flags/1x1/sr.svg new file mode 100644 index 00000000..0ca35962 --- /dev/null +++ b/assets/img/flags/1x1/sr.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/ss.svg b/assets/img/flags/1x1/ss.svg new file mode 100644 index 00000000..bb50fac1 --- /dev/null +++ b/assets/img/flags/1x1/ss.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/st.svg b/assets/img/flags/1x1/st.svg new file mode 100644 index 00000000..c5e7c5ce --- /dev/null +++ b/assets/img/flags/1x1/st.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sv.svg b/assets/img/flags/1x1/sv.svg new file mode 100644 index 00000000..14e98b05 --- /dev/null +++ b/assets/img/flags/1x1/sv.svg @@ -0,0 +1,594 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sx.svg b/assets/img/flags/1x1/sx.svg new file mode 100644 index 00000000..758f483c --- /dev/null +++ b/assets/img/flags/1x1/sx.svg @@ -0,0 +1,56 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/sy.svg b/assets/img/flags/1x1/sy.svg new file mode 100644 index 00000000..39e63f7f --- /dev/null +++ b/assets/img/flags/1x1/sy.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/sz.svg b/assets/img/flags/1x1/sz.svg new file mode 100644 index 00000000..12ae0cdc --- /dev/null +++ b/assets/img/flags/1x1/sz.svg @@ -0,0 +1,34 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/tc.svg b/assets/img/flags/1x1/tc.svg new file mode 100644 index 00000000..0b5af981 --- /dev/null +++ b/assets/img/flags/1x1/tc.svg @@ -0,0 +1,50 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/td.svg b/assets/img/flags/1x1/td.svg new file mode 100644 index 00000000..8201312b --- /dev/null +++ b/assets/img/flags/1x1/td.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/tf.svg b/assets/img/flags/1x1/tf.svg new file mode 100644 index 00000000..1ab7f6a8 --- /dev/null +++ b/assets/img/flags/1x1/tf.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/tg.svg b/assets/img/flags/1x1/tg.svg new file mode 100644 index 00000000..32c28af4 --- /dev/null +++ b/assets/img/flags/1x1/tg.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/th.svg b/assets/img/flags/1x1/th.svg new file mode 100644 index 00000000..35141d39 --- /dev/null +++ b/assets/img/flags/1x1/th.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/tj.svg b/assets/img/flags/1x1/tj.svg new file mode 100644 index 00000000..9232ec1d --- /dev/null +++ b/assets/img/flags/1x1/tj.svg @@ -0,0 +1,26 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/tk.svg b/assets/img/flags/1x1/tk.svg new file mode 100644 index 00000000..9ff92e5e --- /dev/null +++ b/assets/img/flags/1x1/tk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/tl.svg b/assets/img/flags/1x1/tl.svg new file mode 100644 index 00000000..4fbb245e --- /dev/null +++ b/assets/img/flags/1x1/tl.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/tm.svg b/assets/img/flags/1x1/tm.svg new file mode 100644 index 00000000..ac39386b --- /dev/null +++ b/assets/img/flags/1x1/tm.svg @@ -0,0 +1,205 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/tn.svg b/assets/img/flags/1x1/tn.svg new file mode 100644 index 00000000..ab3e36e4 --- /dev/null +++ b/assets/img/flags/1x1/tn.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/to.svg b/assets/img/flags/1x1/to.svg new file mode 100644 index 00000000..3f1b6007 --- /dev/null +++ b/assets/img/flags/1x1/to.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/1x1/tr.svg b/assets/img/flags/1x1/tr.svg new file mode 100644 index 00000000..0fe9017c --- /dev/null +++ b/assets/img/flags/1x1/tr.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/tt.svg b/assets/img/flags/1x1/tt.svg new file mode 100644 index 00000000..0f7f26e7 --- /dev/null +++ b/assets/img/flags/1x1/tt.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/tv.svg b/assets/img/flags/1x1/tv.svg new file mode 100644 index 00000000..098b9161 --- /dev/null +++ b/assets/img/flags/1x1/tv.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/tw.svg b/assets/img/flags/1x1/tw.svg new file mode 100644 index 00000000..83f4e442 --- /dev/null +++ b/assets/img/flags/1x1/tw.svg @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/tz.svg b/assets/img/flags/1x1/tz.svg new file mode 100644 index 00000000..846cbb5a --- /dev/null +++ b/assets/img/flags/1x1/tz.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/ua.svg b/assets/img/flags/1x1/ua.svg new file mode 100644 index 00000000..7ceb8946 --- /dev/null +++ b/assets/img/flags/1x1/ua.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/1x1/ug.svg b/assets/img/flags/1x1/ug.svg new file mode 100644 index 00000000..a82a8fcf --- /dev/null +++ b/assets/img/flags/1x1/ug.svg @@ -0,0 +1,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/um.svg b/assets/img/flags/1x1/um.svg new file mode 100644 index 00000000..b8d4502e --- /dev/null +++ b/assets/img/flags/1x1/um.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/1x1/un.svg b/assets/img/flags/1x1/un.svg new file mode 100644 index 00000000..322569d1 --- /dev/null +++ b/assets/img/flags/1x1/un.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/us.svg b/assets/img/flags/1x1/us.svg index 5db68acd..a7220476 100644 --- a/assets/img/flags/1x1/us.svg +++ b/assets/img/flags/1x1/us.svg @@ -6,4 +6,4 @@ - \ No newline at end of file + diff --git a/assets/img/flags/1x1/uy.svg b/assets/img/flags/1x1/uy.svg new file mode 100644 index 00000000..f6b08b28 --- /dev/null +++ b/assets/img/flags/1x1/uy.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/uz.svg b/assets/img/flags/1x1/uz.svg new file mode 100644 index 00000000..3385bc5a --- /dev/null +++ b/assets/img/flags/1x1/uz.svg @@ -0,0 +1,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/va.svg b/assets/img/flags/1x1/va.svg new file mode 100644 index 00000000..9348ad23 --- /dev/null +++ b/assets/img/flags/1x1/va.svg @@ -0,0 +1,190 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/vc.svg b/assets/img/flags/1x1/vc.svg new file mode 100644 index 00000000..21d41a80 --- /dev/null +++ b/assets/img/flags/1x1/vc.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/1x1/ve.svg b/assets/img/flags/1x1/ve.svg new file mode 100644 index 00000000..665135ba --- /dev/null +++ b/assets/img/flags/1x1/ve.svg @@ -0,0 +1,26 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/vg.svg b/assets/img/flags/1x1/vg.svg new file mode 100644 index 00000000..cfcbbba4 --- /dev/null +++ b/assets/img/flags/1x1/vg.svg @@ -0,0 +1,59 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/vi.svg b/assets/img/flags/1x1/vi.svg new file mode 100644 index 00000000..081f8c6c --- /dev/null +++ b/assets/img/flags/1x1/vi.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/vn.svg b/assets/img/flags/1x1/vn.svg new file mode 100644 index 00000000..49a68f02 --- /dev/null +++ b/assets/img/flags/1x1/vn.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/1x1/vu.svg b/assets/img/flags/1x1/vu.svg new file mode 100644 index 00000000..0e695b95 --- /dev/null +++ b/assets/img/flags/1x1/vu.svg @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/wf.svg b/assets/img/flags/1x1/wf.svg new file mode 100644 index 00000000..5ba64e4d --- /dev/null +++ b/assets/img/flags/1x1/wf.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/ws.svg b/assets/img/flags/1x1/ws.svg new file mode 100644 index 00000000..ab08fdb9 --- /dev/null +++ b/assets/img/flags/1x1/ws.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/xk.svg b/assets/img/flags/1x1/xk.svg new file mode 100644 index 00000000..28bdeadb --- /dev/null +++ b/assets/img/flags/1x1/xk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/xx.svg b/assets/img/flags/1x1/xx.svg new file mode 100644 index 00000000..5a44cb70 --- /dev/null +++ b/assets/img/flags/1x1/xx.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/1x1/ye.svg b/assets/img/flags/1x1/ye.svg new file mode 100644 index 00000000..2ccb23bf --- /dev/null +++ b/assets/img/flags/1x1/ye.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/1x1/yt.svg b/assets/img/flags/1x1/yt.svg new file mode 100644 index 00000000..41a4408c --- /dev/null +++ b/assets/img/flags/1x1/yt.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/1x1/za.svg b/assets/img/flags/1x1/za.svg new file mode 100644 index 00000000..397696ed --- /dev/null +++ b/assets/img/flags/1x1/za.svg @@ -0,0 +1,17 @@ + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/zm.svg b/assets/img/flags/1x1/zm.svg new file mode 100644 index 00000000..a2084fb2 --- /dev/null +++ b/assets/img/flags/1x1/zm.svg @@ -0,0 +1,27 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/1x1/zw.svg b/assets/img/flags/1x1/zw.svg new file mode 100644 index 00000000..98e1a42d --- /dev/null +++ b/assets/img/flags/1x1/zw.svg @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ad.svg b/assets/img/flags/4x3/ad.svg new file mode 100644 index 00000000..067ab772 --- /dev/null +++ b/assets/img/flags/4x3/ad.svg @@ -0,0 +1,150 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ae.svg b/assets/img/flags/4x3/ae.svg new file mode 100644 index 00000000..651ac852 --- /dev/null +++ b/assets/img/flags/4x3/ae.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/af.svg b/assets/img/flags/4x3/af.svg new file mode 100644 index 00000000..521ac4cf --- /dev/null +++ b/assets/img/flags/4x3/af.svg @@ -0,0 +1,81 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ag.svg b/assets/img/flags/4x3/ag.svg new file mode 100644 index 00000000..243c3d8f --- /dev/null +++ b/assets/img/flags/4x3/ag.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ai.svg b/assets/img/flags/4x3/ai.svg new file mode 100644 index 00000000..628ad9be --- /dev/null +++ b/assets/img/flags/4x3/ai.svg @@ -0,0 +1,29 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/al.svg b/assets/img/flags/4x3/al.svg new file mode 100644 index 00000000..1135b4b8 --- /dev/null +++ b/assets/img/flags/4x3/al.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/am.svg b/assets/img/flags/4x3/am.svg new file mode 100644 index 00000000..99fa4dc5 --- /dev/null +++ b/assets/img/flags/4x3/am.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/ao.svg b/assets/img/flags/4x3/ao.svg new file mode 100644 index 00000000..b1863bd0 --- /dev/null +++ b/assets/img/flags/4x3/ao.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/aq.svg b/assets/img/flags/4x3/aq.svg new file mode 100644 index 00000000..53840ccc --- /dev/null +++ b/assets/img/flags/4x3/aq.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/ar.svg b/assets/img/flags/4x3/ar.svg new file mode 100644 index 00000000..d20cbbdc --- /dev/null +++ b/assets/img/flags/4x3/ar.svg @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/arab.svg b/assets/img/flags/4x3/arab.svg new file mode 100644 index 00000000..96d27157 --- /dev/null +++ b/assets/img/flags/4x3/arab.svg @@ -0,0 +1,109 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/as.svg b/assets/img/flags/4x3/as.svg new file mode 100644 index 00000000..35435567 --- /dev/null +++ b/assets/img/flags/4x3/as.svg @@ -0,0 +1,72 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/at.svg b/assets/img/flags/4x3/at.svg new file mode 100644 index 00000000..9d2775c0 --- /dev/null +++ b/assets/img/flags/4x3/at.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/au.svg b/assets/img/flags/4x3/au.svg new file mode 100644 index 00000000..96e80768 --- /dev/null +++ b/assets/img/flags/4x3/au.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/aw.svg b/assets/img/flags/4x3/aw.svg new file mode 100644 index 00000000..413b7c45 --- /dev/null +++ b/assets/img/flags/4x3/aw.svg @@ -0,0 +1,186 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ax.svg b/assets/img/flags/4x3/ax.svg new file mode 100644 index 00000000..0584d713 --- /dev/null +++ b/assets/img/flags/4x3/ax.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/az.svg b/assets/img/flags/4x3/az.svg new file mode 100644 index 00000000..35575221 --- /dev/null +++ b/assets/img/flags/4x3/az.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/ba.svg b/assets/img/flags/4x3/ba.svg new file mode 100644 index 00000000..93bd9cf9 --- /dev/null +++ b/assets/img/flags/4x3/ba.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bb.svg b/assets/img/flags/4x3/bb.svg new file mode 100644 index 00000000..cecd5cc3 --- /dev/null +++ b/assets/img/flags/4x3/bb.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/bd.svg b/assets/img/flags/4x3/bd.svg new file mode 100644 index 00000000..16b794de --- /dev/null +++ b/assets/img/flags/4x3/bd.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/be.svg b/assets/img/flags/4x3/be.svg new file mode 100644 index 00000000..ac706a0b --- /dev/null +++ b/assets/img/flags/4x3/be.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/bf.svg b/assets/img/flags/4x3/bf.svg new file mode 100644 index 00000000..47138225 --- /dev/null +++ b/assets/img/flags/4x3/bf.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/bg.svg b/assets/img/flags/4x3/bg.svg new file mode 100644 index 00000000..af2d0d07 --- /dev/null +++ b/assets/img/flags/4x3/bg.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/bh.svg b/assets/img/flags/4x3/bh.svg new file mode 100644 index 00000000..7a2ea549 --- /dev/null +++ b/assets/img/flags/4x3/bh.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/bi.svg b/assets/img/flags/4x3/bi.svg new file mode 100644 index 00000000..a4434a95 --- /dev/null +++ b/assets/img/flags/4x3/bi.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bj.svg b/assets/img/flags/4x3/bj.svg new file mode 100644 index 00000000..0846724d --- /dev/null +++ b/assets/img/flags/4x3/bj.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bl.svg b/assets/img/flags/4x3/bl.svg new file mode 100644 index 00000000..f84cbbae --- /dev/null +++ b/assets/img/flags/4x3/bl.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/bm.svg b/assets/img/flags/4x3/bm.svg new file mode 100644 index 00000000..bab3e0ab --- /dev/null +++ b/assets/img/flags/4x3/bm.svg @@ -0,0 +1,97 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bn.svg b/assets/img/flags/4x3/bn.svg new file mode 100644 index 00000000..4b416ebb --- /dev/null +++ b/assets/img/flags/4x3/bn.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bo.svg b/assets/img/flags/4x3/bo.svg new file mode 100644 index 00000000..46dc7673 --- /dev/null +++ b/assets/img/flags/4x3/bo.svg @@ -0,0 +1,674 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bq.svg b/assets/img/flags/4x3/bq.svg new file mode 100644 index 00000000..0e6bc76e --- /dev/null +++ b/assets/img/flags/4x3/bq.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/br.svg b/assets/img/flags/4x3/br.svg index 169c345a..22c908e7 100644 --- a/assets/img/flags/4x3/br.svg +++ b/assets/img/flags/4x3/br.svg @@ -7,7 +7,7 @@ - + @@ -42,4 +42,4 @@ - \ No newline at end of file + diff --git a/assets/img/flags/4x3/bs.svg b/assets/img/flags/4x3/bs.svg new file mode 100644 index 00000000..5cc918e5 --- /dev/null +++ b/assets/img/flags/4x3/bs.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bt.svg b/assets/img/flags/4x3/bt.svg new file mode 100644 index 00000000..798c79b3 --- /dev/null +++ b/assets/img/flags/4x3/bt.svg @@ -0,0 +1,89 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bv.svg b/assets/img/flags/4x3/bv.svg new file mode 100644 index 00000000..40e16d94 --- /dev/null +++ b/assets/img/flags/4x3/bv.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bw.svg b/assets/img/flags/4x3/bw.svg new file mode 100644 index 00000000..3435608d --- /dev/null +++ b/assets/img/flags/4x3/bw.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/by.svg b/assets/img/flags/4x3/by.svg new file mode 100644 index 00000000..7e90ff25 --- /dev/null +++ b/assets/img/flags/4x3/by.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/bz.svg b/assets/img/flags/4x3/bz.svg new file mode 100644 index 00000000..25386a51 --- /dev/null +++ b/assets/img/flags/4x3/bz.svg @@ -0,0 +1,145 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ca.svg b/assets/img/flags/4x3/ca.svg new file mode 100644 index 00000000..89da5b7b --- /dev/null +++ b/assets/img/flags/4x3/ca.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/cc.svg b/assets/img/flags/4x3/cc.svg new file mode 100644 index 00000000..ddfd1803 --- /dev/null +++ b/assets/img/flags/4x3/cc.svg @@ -0,0 +1,19 @@ + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cd.svg b/assets/img/flags/4x3/cd.svg new file mode 100644 index 00000000..b9cf5289 --- /dev/null +++ b/assets/img/flags/4x3/cd.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/cefta.svg b/assets/img/flags/4x3/cefta.svg new file mode 100644 index 00000000..f748d08a --- /dev/null +++ b/assets/img/flags/4x3/cefta.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cf.svg b/assets/img/flags/4x3/cf.svg new file mode 100644 index 00000000..a6cd3670 --- /dev/null +++ b/assets/img/flags/4x3/cf.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cg.svg b/assets/img/flags/4x3/cg.svg new file mode 100644 index 00000000..f5a0e42d --- /dev/null +++ b/assets/img/flags/4x3/cg.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ch.svg b/assets/img/flags/4x3/ch.svg new file mode 100644 index 00000000..b42d6709 --- /dev/null +++ b/assets/img/flags/4x3/ch.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/ci.svg b/assets/img/flags/4x3/ci.svg new file mode 100644 index 00000000..e400f0c1 --- /dev/null +++ b/assets/img/flags/4x3/ci.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/ck.svg b/assets/img/flags/4x3/ck.svg new file mode 100644 index 00000000..18e547b1 --- /dev/null +++ b/assets/img/flags/4x3/ck.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/cl.svg b/assets/img/flags/4x3/cl.svg new file mode 100644 index 00000000..5b3c72fa --- /dev/null +++ b/assets/img/flags/4x3/cl.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cm.svg b/assets/img/flags/4x3/cm.svg new file mode 100644 index 00000000..70adc8b6 --- /dev/null +++ b/assets/img/flags/4x3/cm.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cn.svg b/assets/img/flags/4x3/cn.svg new file mode 100644 index 00000000..10d3489a --- /dev/null +++ b/assets/img/flags/4x3/cn.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/4x3/co.svg b/assets/img/flags/4x3/co.svg new file mode 100644 index 00000000..ebd0a0fb --- /dev/null +++ b/assets/img/flags/4x3/co.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/cp.svg b/assets/img/flags/4x3/cp.svg new file mode 100644 index 00000000..b8aa9cfd --- /dev/null +++ b/assets/img/flags/4x3/cp.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/cr.svg b/assets/img/flags/4x3/cr.svg new file mode 100644 index 00000000..5a409eeb --- /dev/null +++ b/assets/img/flags/4x3/cr.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/cu.svg b/assets/img/flags/4x3/cu.svg new file mode 100644 index 00000000..053c9ee3 --- /dev/null +++ b/assets/img/flags/4x3/cu.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cv.svg b/assets/img/flags/4x3/cv.svg new file mode 100644 index 00000000..aec89949 --- /dev/null +++ b/assets/img/flags/4x3/cv.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cw.svg b/assets/img/flags/4x3/cw.svg new file mode 100644 index 00000000..bb0ece22 --- /dev/null +++ b/assets/img/flags/4x3/cw.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cx.svg b/assets/img/flags/4x3/cx.svg new file mode 100644 index 00000000..374ff2da --- /dev/null +++ b/assets/img/flags/4x3/cx.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/cy.svg b/assets/img/flags/4x3/cy.svg new file mode 100644 index 00000000..7e3d883d --- /dev/null +++ b/assets/img/flags/4x3/cy.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/cz.svg b/assets/img/flags/4x3/cz.svg new file mode 100644 index 00000000..7913de38 --- /dev/null +++ b/assets/img/flags/4x3/cz.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/de.svg b/assets/img/flags/4x3/de.svg new file mode 100644 index 00000000..71aa2d2c --- /dev/null +++ b/assets/img/flags/4x3/de.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/dg.svg b/assets/img/flags/4x3/dg.svg new file mode 100644 index 00000000..f163caf9 --- /dev/null +++ b/assets/img/flags/4x3/dg.svg @@ -0,0 +1,130 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/dj.svg b/assets/img/flags/4x3/dj.svg new file mode 100644 index 00000000..9b00a820 --- /dev/null +++ b/assets/img/flags/4x3/dj.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/dk.svg b/assets/img/flags/4x3/dk.svg new file mode 100644 index 00000000..563277f8 --- /dev/null +++ b/assets/img/flags/4x3/dk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/dm.svg b/assets/img/flags/4x3/dm.svg new file mode 100644 index 00000000..f692094d --- /dev/null +++ b/assets/img/flags/4x3/dm.svg @@ -0,0 +1,152 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/do.svg b/assets/img/flags/4x3/do.svg new file mode 100644 index 00000000..b1be393e --- /dev/null +++ b/assets/img/flags/4x3/do.svg @@ -0,0 +1,121 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/dz.svg b/assets/img/flags/4x3/dz.svg new file mode 100644 index 00000000..5ff29a74 --- /dev/null +++ b/assets/img/flags/4x3/dz.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/eac.svg b/assets/img/flags/4x3/eac.svg new file mode 100644 index 00000000..aaf8133f --- /dev/null +++ b/assets/img/flags/4x3/eac.svg @@ -0,0 +1,48 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ec.svg b/assets/img/flags/4x3/ec.svg new file mode 100644 index 00000000..397bfd98 --- /dev/null +++ b/assets/img/flags/4x3/ec.svg @@ -0,0 +1,138 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ee.svg b/assets/img/flags/4x3/ee.svg new file mode 100644 index 00000000..8b98c2c4 --- /dev/null +++ b/assets/img/flags/4x3/ee.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/eg.svg b/assets/img/flags/4x3/eg.svg new file mode 100644 index 00000000..00d1fa59 --- /dev/null +++ b/assets/img/flags/4x3/eg.svg @@ -0,0 +1,38 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/eh.svg b/assets/img/flags/4x3/eh.svg new file mode 100644 index 00000000..6aec7288 --- /dev/null +++ b/assets/img/flags/4x3/eh.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/er.svg b/assets/img/flags/4x3/er.svg new file mode 100644 index 00000000..3f4f3f29 --- /dev/null +++ b/assets/img/flags/4x3/er.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/es-ct.svg b/assets/img/flags/4x3/es-ct.svg new file mode 100644 index 00000000..4d859114 --- /dev/null +++ b/assets/img/flags/4x3/es-ct.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/es-ga.svg b/assets/img/flags/4x3/es-ga.svg new file mode 100644 index 00000000..31657813 --- /dev/null +++ b/assets/img/flags/4x3/es-ga.svg @@ -0,0 +1,187 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/es-pv.svg b/assets/img/flags/4x3/es-pv.svg new file mode 100644 index 00000000..21c8759e --- /dev/null +++ b/assets/img/flags/4x3/es-pv.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/es.svg b/assets/img/flags/4x3/es.svg new file mode 100644 index 00000000..acdf927f --- /dev/null +++ b/assets/img/flags/4x3/es.svg @@ -0,0 +1,544 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/et.svg b/assets/img/flags/4x3/et.svg new file mode 100644 index 00000000..3f99be48 --- /dev/null +++ b/assets/img/flags/4x3/et.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/eu.svg b/assets/img/flags/4x3/eu.svg new file mode 100644 index 00000000..b0874c1e --- /dev/null +++ b/assets/img/flags/4x3/eu.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/fi.svg b/assets/img/flags/4x3/fi.svg new file mode 100644 index 00000000..470be2d0 --- /dev/null +++ b/assets/img/flags/4x3/fi.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/fj.svg b/assets/img/flags/4x3/fj.svg new file mode 100644 index 00000000..23fbe57a --- /dev/null +++ b/assets/img/flags/4x3/fj.svg @@ -0,0 +1,120 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/fk.svg b/assets/img/flags/4x3/fk.svg new file mode 100644 index 00000000..c65bf96d --- /dev/null +++ b/assets/img/flags/4x3/fk.svg @@ -0,0 +1,90 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/fm.svg b/assets/img/flags/4x3/fm.svg new file mode 100644 index 00000000..c1b7c977 --- /dev/null +++ b/assets/img/flags/4x3/fm.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/4x3/fo.svg b/assets/img/flags/4x3/fo.svg new file mode 100644 index 00000000..f802d285 --- /dev/null +++ b/assets/img/flags/4x3/fo.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/fr.svg b/assets/img/flags/4x3/fr.svg new file mode 100644 index 00000000..4110e59e --- /dev/null +++ b/assets/img/flags/4x3/fr.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/ga.svg b/assets/img/flags/4x3/ga.svg new file mode 100644 index 00000000..76edab42 --- /dev/null +++ b/assets/img/flags/4x3/ga.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/gb-eng.svg b/assets/img/flags/4x3/gb-eng.svg new file mode 100644 index 00000000..12e3b67d --- /dev/null +++ b/assets/img/flags/4x3/gb-eng.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/gb-nir.svg b/assets/img/flags/4x3/gb-nir.svg new file mode 100644 index 00000000..e6be8dbc --- /dev/null +++ b/assets/img/flags/4x3/gb-nir.svg @@ -0,0 +1,132 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gb-sct.svg b/assets/img/flags/4x3/gb-sct.svg new file mode 100644 index 00000000..f50cd322 --- /dev/null +++ b/assets/img/flags/4x3/gb-sct.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/gb-wls.svg b/assets/img/flags/4x3/gb-wls.svg new file mode 100644 index 00000000..6e15fd01 --- /dev/null +++ b/assets/img/flags/4x3/gb-wls.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/gb.svg b/assets/img/flags/4x3/gb.svg new file mode 100644 index 00000000..79913831 --- /dev/null +++ b/assets/img/flags/4x3/gb.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/gd.svg b/assets/img/flags/4x3/gd.svg new file mode 100644 index 00000000..cb51e961 --- /dev/null +++ b/assets/img/flags/4x3/gd.svg @@ -0,0 +1,27 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ge.svg b/assets/img/flags/4x3/ge.svg new file mode 100644 index 00000000..d8126ec8 --- /dev/null +++ b/assets/img/flags/4x3/ge.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/gf.svg b/assets/img/flags/4x3/gf.svg new file mode 100644 index 00000000..f8fe94c6 --- /dev/null +++ b/assets/img/flags/4x3/gf.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/gg.svg b/assets/img/flags/4x3/gg.svg new file mode 100644 index 00000000..f8216c8b --- /dev/null +++ b/assets/img/flags/4x3/gg.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/gh.svg b/assets/img/flags/4x3/gh.svg new file mode 100644 index 00000000..5c3e3e69 --- /dev/null +++ b/assets/img/flags/4x3/gh.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/gi.svg b/assets/img/flags/4x3/gi.svg new file mode 100644 index 00000000..e2b590af --- /dev/null +++ b/assets/img/flags/4x3/gi.svg @@ -0,0 +1,32 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gl.svg b/assets/img/flags/4x3/gl.svg new file mode 100644 index 00000000..eb5a52e9 --- /dev/null +++ b/assets/img/flags/4x3/gl.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/gm.svg b/assets/img/flags/4x3/gm.svg new file mode 100644 index 00000000..8fe9d669 --- /dev/null +++ b/assets/img/flags/4x3/gm.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gn.svg b/assets/img/flags/4x3/gn.svg new file mode 100644 index 00000000..40d6ad4f --- /dev/null +++ b/assets/img/flags/4x3/gn.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/gp.svg b/assets/img/flags/4x3/gp.svg new file mode 100644 index 00000000..ee55c4bc --- /dev/null +++ b/assets/img/flags/4x3/gp.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/gq.svg b/assets/img/flags/4x3/gq.svg new file mode 100644 index 00000000..134e4421 --- /dev/null +++ b/assets/img/flags/4x3/gq.svg @@ -0,0 +1,23 @@ + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gr.svg b/assets/img/flags/4x3/gr.svg new file mode 100644 index 00000000..599741ee --- /dev/null +++ b/assets/img/flags/4x3/gr.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gs.svg b/assets/img/flags/4x3/gs.svg new file mode 100644 index 00000000..1536e073 --- /dev/null +++ b/assets/img/flags/4x3/gs.svg @@ -0,0 +1,133 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gt.svg b/assets/img/flags/4x3/gt.svg new file mode 100644 index 00000000..f7cffbdc --- /dev/null +++ b/assets/img/flags/4x3/gt.svg @@ -0,0 +1,204 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gu.svg b/assets/img/flags/4x3/gu.svg new file mode 100644 index 00000000..0d66e1bf --- /dev/null +++ b/assets/img/flags/4x3/gu.svg @@ -0,0 +1,23 @@ + + + + + + + + + + G + U + A + M + + + + + + + + + + diff --git a/assets/img/flags/4x3/gw.svg b/assets/img/flags/4x3/gw.svg new file mode 100644 index 00000000..d470bac9 --- /dev/null +++ b/assets/img/flags/4x3/gw.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/gy.svg b/assets/img/flags/4x3/gy.svg new file mode 100644 index 00000000..569fb562 --- /dev/null +++ b/assets/img/flags/4x3/gy.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/hk.svg b/assets/img/flags/4x3/hk.svg new file mode 100644 index 00000000..4fd55bc1 --- /dev/null +++ b/assets/img/flags/4x3/hk.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/hm.svg b/assets/img/flags/4x3/hm.svg new file mode 100644 index 00000000..815c4820 --- /dev/null +++ b/assets/img/flags/4x3/hm.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/hn.svg b/assets/img/flags/4x3/hn.svg new file mode 100644 index 00000000..11fde67d --- /dev/null +++ b/assets/img/flags/4x3/hn.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/hr.svg b/assets/img/flags/4x3/hr.svg new file mode 100644 index 00000000..44fed27d --- /dev/null +++ b/assets/img/flags/4x3/hr.svg @@ -0,0 +1,58 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ht.svg b/assets/img/flags/4x3/ht.svg new file mode 100644 index 00000000..5d48eb93 --- /dev/null +++ b/assets/img/flags/4x3/ht.svg @@ -0,0 +1,116 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/hu.svg b/assets/img/flags/4x3/hu.svg new file mode 100644 index 00000000..baddf7f5 --- /dev/null +++ b/assets/img/flags/4x3/hu.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/ic.svg b/assets/img/flags/4x3/ic.svg new file mode 100644 index 00000000..81e6ee2e --- /dev/null +++ b/assets/img/flags/4x3/ic.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/id.svg b/assets/img/flags/4x3/id.svg new file mode 100644 index 00000000..3b7c8fcf --- /dev/null +++ b/assets/img/flags/4x3/id.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/ie.svg b/assets/img/flags/4x3/ie.svg new file mode 100644 index 00000000..049be14d --- /dev/null +++ b/assets/img/flags/4x3/ie.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/il.svg b/assets/img/flags/4x3/il.svg new file mode 100644 index 00000000..f43be7e8 --- /dev/null +++ b/assets/img/flags/4x3/il.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/im.svg b/assets/img/flags/4x3/im.svg new file mode 100644 index 00000000..f06f3d6f --- /dev/null +++ b/assets/img/flags/4x3/im.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/in.svg b/assets/img/flags/4x3/in.svg new file mode 100644 index 00000000..bc47d749 --- /dev/null +++ b/assets/img/flags/4x3/in.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/io.svg b/assets/img/flags/4x3/io.svg new file mode 100644 index 00000000..77016679 --- /dev/null +++ b/assets/img/flags/4x3/io.svg @@ -0,0 +1,130 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/iq.svg b/assets/img/flags/4x3/iq.svg new file mode 100644 index 00000000..259da9ad --- /dev/null +++ b/assets/img/flags/4x3/iq.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/4x3/ir.svg b/assets/img/flags/4x3/ir.svg new file mode 100644 index 00000000..8c6d5162 --- /dev/null +++ b/assets/img/flags/4x3/ir.svg @@ -0,0 +1,219 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/is.svg b/assets/img/flags/4x3/is.svg new file mode 100644 index 00000000..a6588afa --- /dev/null +++ b/assets/img/flags/4x3/is.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/it.svg b/assets/img/flags/4x3/it.svg new file mode 100644 index 00000000..20a8bfdc --- /dev/null +++ b/assets/img/flags/4x3/it.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/je.svg b/assets/img/flags/4x3/je.svg new file mode 100644 index 00000000..611180d4 --- /dev/null +++ b/assets/img/flags/4x3/je.svg @@ -0,0 +1,62 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/jm.svg b/assets/img/flags/4x3/jm.svg new file mode 100644 index 00000000..269df038 --- /dev/null +++ b/assets/img/flags/4x3/jm.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/jo.svg b/assets/img/flags/4x3/jo.svg new file mode 100644 index 00000000..d6f927d4 --- /dev/null +++ b/assets/img/flags/4x3/jo.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/jp.svg b/assets/img/flags/4x3/jp.svg new file mode 100644 index 00000000..cc1c181c --- /dev/null +++ b/assets/img/flags/4x3/jp.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ke.svg b/assets/img/flags/4x3/ke.svg new file mode 100644 index 00000000..3a67ca3c --- /dev/null +++ b/assets/img/flags/4x3/ke.svg @@ -0,0 +1,23 @@ + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kg.svg b/assets/img/flags/4x3/kg.svg new file mode 100644 index 00000000..68c210b1 --- /dev/null +++ b/assets/img/flags/4x3/kg.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kh.svg b/assets/img/flags/4x3/kh.svg new file mode 100644 index 00000000..c658838f --- /dev/null +++ b/assets/img/flags/4x3/kh.svg @@ -0,0 +1,61 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ki.svg b/assets/img/flags/4x3/ki.svg new file mode 100644 index 00000000..0c803280 --- /dev/null +++ b/assets/img/flags/4x3/ki.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/km.svg b/assets/img/flags/4x3/km.svg new file mode 100644 index 00000000..414d65e4 --- /dev/null +++ b/assets/img/flags/4x3/km.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kn.svg b/assets/img/flags/4x3/kn.svg new file mode 100644 index 00000000..47fe64d6 --- /dev/null +++ b/assets/img/flags/4x3/kn.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kp.svg b/assets/img/flags/4x3/kp.svg new file mode 100644 index 00000000..4d1dbab2 --- /dev/null +++ b/assets/img/flags/4x3/kp.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kr.svg b/assets/img/flags/4x3/kr.svg new file mode 100644 index 00000000..6947eab2 --- /dev/null +++ b/assets/img/flags/4x3/kr.svg @@ -0,0 +1,24 @@ + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kw.svg b/assets/img/flags/4x3/kw.svg new file mode 100644 index 00000000..3dd89e99 --- /dev/null +++ b/assets/img/flags/4x3/kw.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ky.svg b/assets/img/flags/4x3/ky.svg new file mode 100644 index 00000000..74a2fea2 --- /dev/null +++ b/assets/img/flags/4x3/ky.svg @@ -0,0 +1,103 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/kz.svg b/assets/img/flags/4x3/kz.svg new file mode 100644 index 00000000..04a47f53 --- /dev/null +++ b/assets/img/flags/4x3/kz.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/la.svg b/assets/img/flags/4x3/la.svg new file mode 100644 index 00000000..6aea6b72 --- /dev/null +++ b/assets/img/flags/4x3/la.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/lb.svg b/assets/img/flags/4x3/lb.svg new file mode 100644 index 00000000..8619f241 --- /dev/null +++ b/assets/img/flags/4x3/lb.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/lc.svg b/assets/img/flags/4x3/lc.svg new file mode 100644 index 00000000..bb256541 --- /dev/null +++ b/assets/img/flags/4x3/lc.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/li.svg b/assets/img/flags/4x3/li.svg new file mode 100644 index 00000000..68ea26fa --- /dev/null +++ b/assets/img/flags/4x3/li.svg @@ -0,0 +1,43 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/lk.svg b/assets/img/flags/4x3/lk.svg new file mode 100644 index 00000000..2c5cdbe0 --- /dev/null +++ b/assets/img/flags/4x3/lk.svg @@ -0,0 +1,22 @@ + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/lr.svg b/assets/img/flags/4x3/lr.svg new file mode 100644 index 00000000..e482ab9d --- /dev/null +++ b/assets/img/flags/4x3/lr.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ls.svg b/assets/img/flags/4x3/ls.svg new file mode 100644 index 00000000..a7c01a98 --- /dev/null +++ b/assets/img/flags/4x3/ls.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/lt.svg b/assets/img/flags/4x3/lt.svg new file mode 100644 index 00000000..90ec5d24 --- /dev/null +++ b/assets/img/flags/4x3/lt.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/lu.svg b/assets/img/flags/4x3/lu.svg new file mode 100644 index 00000000..cc122068 --- /dev/null +++ b/assets/img/flags/4x3/lu.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/lv.svg b/assets/img/flags/4x3/lv.svg new file mode 100644 index 00000000..6a9e75ec --- /dev/null +++ b/assets/img/flags/4x3/lv.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/ly.svg b/assets/img/flags/4x3/ly.svg new file mode 100644 index 00000000..1eaa51e4 --- /dev/null +++ b/assets/img/flags/4x3/ly.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ma.svg b/assets/img/flags/4x3/ma.svg new file mode 100644 index 00000000..7ce56eff --- /dev/null +++ b/assets/img/flags/4x3/ma.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/mc.svg b/assets/img/flags/4x3/mc.svg new file mode 100644 index 00000000..9cb6c9e8 --- /dev/null +++ b/assets/img/flags/4x3/mc.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/md.svg b/assets/img/flags/4x3/md.svg new file mode 100644 index 00000000..6dc441e1 --- /dev/null +++ b/assets/img/flags/4x3/md.svg @@ -0,0 +1,70 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/me.svg b/assets/img/flags/4x3/me.svg new file mode 100644 index 00000000..d8918907 --- /dev/null +++ b/assets/img/flags/4x3/me.svg @@ -0,0 +1,116 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mf.svg b/assets/img/flags/4x3/mf.svg new file mode 100644 index 00000000..6305edc1 --- /dev/null +++ b/assets/img/flags/4x3/mf.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/mg.svg b/assets/img/flags/4x3/mg.svg new file mode 100644 index 00000000..5fa2d244 --- /dev/null +++ b/assets/img/flags/4x3/mg.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/mh.svg b/assets/img/flags/4x3/mh.svg new file mode 100644 index 00000000..7b9f4907 --- /dev/null +++ b/assets/img/flags/4x3/mh.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/mk.svg b/assets/img/flags/4x3/mk.svg new file mode 100644 index 00000000..4f5cae77 --- /dev/null +++ b/assets/img/flags/4x3/mk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/ml.svg b/assets/img/flags/4x3/ml.svg new file mode 100644 index 00000000..6f6b7169 --- /dev/null +++ b/assets/img/flags/4x3/ml.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/mm.svg b/assets/img/flags/4x3/mm.svg new file mode 100644 index 00000000..42b4dee2 --- /dev/null +++ b/assets/img/flags/4x3/mm.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mn.svg b/assets/img/flags/4x3/mn.svg new file mode 100644 index 00000000..152c2fcb --- /dev/null +++ b/assets/img/flags/4x3/mn.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mo.svg b/assets/img/flags/4x3/mo.svg new file mode 100644 index 00000000..d39985d0 --- /dev/null +++ b/assets/img/flags/4x3/mo.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/mp.svg b/assets/img/flags/4x3/mp.svg new file mode 100644 index 00000000..ff59ebf8 --- /dev/null +++ b/assets/img/flags/4x3/mp.svg @@ -0,0 +1,86 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mq.svg b/assets/img/flags/4x3/mq.svg new file mode 100644 index 00000000..b221951e --- /dev/null +++ b/assets/img/flags/4x3/mq.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/mr.svg b/assets/img/flags/4x3/mr.svg new file mode 100644 index 00000000..7558234c --- /dev/null +++ b/assets/img/flags/4x3/mr.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/ms.svg b/assets/img/flags/4x3/ms.svg new file mode 100644 index 00000000..faf07b07 --- /dev/null +++ b/assets/img/flags/4x3/ms.svg @@ -0,0 +1,29 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mt.svg b/assets/img/flags/4x3/mt.svg new file mode 100644 index 00000000..c597266c --- /dev/null +++ b/assets/img/flags/4x3/mt.svg @@ -0,0 +1,58 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mu.svg b/assets/img/flags/4x3/mu.svg new file mode 100644 index 00000000..82d7a3be --- /dev/null +++ b/assets/img/flags/4x3/mu.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/mv.svg b/assets/img/flags/4x3/mv.svg new file mode 100644 index 00000000..10450f98 --- /dev/null +++ b/assets/img/flags/4x3/mv.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/mw.svg b/assets/img/flags/4x3/mw.svg new file mode 100644 index 00000000..d83ddb21 --- /dev/null +++ b/assets/img/flags/4x3/mw.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/4x3/mx.svg b/assets/img/flags/4x3/mx.svg new file mode 100644 index 00000000..f98a89e1 --- /dev/null +++ b/assets/img/flags/4x3/mx.svg @@ -0,0 +1,382 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/my.svg b/assets/img/flags/4x3/my.svg new file mode 100644 index 00000000..89576f69 --- /dev/null +++ b/assets/img/flags/4x3/my.svg @@ -0,0 +1,26 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/mz.svg b/assets/img/flags/4x3/mz.svg new file mode 100644 index 00000000..2ee6ec14 --- /dev/null +++ b/assets/img/flags/4x3/mz.svg @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/na.svg b/assets/img/flags/4x3/na.svg new file mode 100644 index 00000000..35b9f783 --- /dev/null +++ b/assets/img/flags/4x3/na.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/nc.svg b/assets/img/flags/4x3/nc.svg new file mode 100644 index 00000000..068f0c69 --- /dev/null +++ b/assets/img/flags/4x3/nc.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ne.svg b/assets/img/flags/4x3/ne.svg new file mode 100644 index 00000000..39a82b82 --- /dev/null +++ b/assets/img/flags/4x3/ne.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/nf.svg b/assets/img/flags/4x3/nf.svg new file mode 100644 index 00000000..c8b30938 --- /dev/null +++ b/assets/img/flags/4x3/nf.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/ng.svg b/assets/img/flags/4x3/ng.svg new file mode 100644 index 00000000..81eb35f7 --- /dev/null +++ b/assets/img/flags/4x3/ng.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/ni.svg b/assets/img/flags/4x3/ni.svg new file mode 100644 index 00000000..6dcdc9a8 --- /dev/null +++ b/assets/img/flags/4x3/ni.svg @@ -0,0 +1,129 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/nl.svg b/assets/img/flags/4x3/nl.svg new file mode 100644 index 00000000..e90f5b03 --- /dev/null +++ b/assets/img/flags/4x3/nl.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/no.svg b/assets/img/flags/4x3/no.svg new file mode 100644 index 00000000..a5f2a152 --- /dev/null +++ b/assets/img/flags/4x3/no.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/np.svg b/assets/img/flags/4x3/np.svg new file mode 100644 index 00000000..8d71d106 --- /dev/null +++ b/assets/img/flags/4x3/np.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/nr.svg b/assets/img/flags/4x3/nr.svg new file mode 100644 index 00000000..ff394c41 --- /dev/null +++ b/assets/img/flags/4x3/nr.svg @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/nu.svg b/assets/img/flags/4x3/nu.svg new file mode 100644 index 00000000..4067baff --- /dev/null +++ b/assets/img/flags/4x3/nu.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/4x3/nz.svg b/assets/img/flags/4x3/nz.svg new file mode 100644 index 00000000..935d8a74 --- /dev/null +++ b/assets/img/flags/4x3/nz.svg @@ -0,0 +1,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/om.svg b/assets/img/flags/4x3/om.svg new file mode 100644 index 00000000..c003f86e --- /dev/null +++ b/assets/img/flags/4x3/om.svg @@ -0,0 +1,115 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pa.svg b/assets/img/flags/4x3/pa.svg new file mode 100644 index 00000000..8dc03bc6 --- /dev/null +++ b/assets/img/flags/4x3/pa.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pc.svg b/assets/img/flags/4x3/pc.svg new file mode 100644 index 00000000..882197da --- /dev/null +++ b/assets/img/flags/4x3/pc.svg @@ -0,0 +1,33 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pe.svg b/assets/img/flags/4x3/pe.svg new file mode 100644 index 00000000..33e6cfd4 --- /dev/null +++ b/assets/img/flags/4x3/pe.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/pf.svg b/assets/img/flags/4x3/pf.svg new file mode 100644 index 00000000..e06b236e --- /dev/null +++ b/assets/img/flags/4x3/pf.svg @@ -0,0 +1,19 @@ + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pg.svg b/assets/img/flags/4x3/pg.svg new file mode 100644 index 00000000..237cb6ee --- /dev/null +++ b/assets/img/flags/4x3/pg.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/ph.svg b/assets/img/flags/4x3/ph.svg new file mode 100644 index 00000000..65489e1c --- /dev/null +++ b/assets/img/flags/4x3/ph.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/pk.svg b/assets/img/flags/4x3/pk.svg new file mode 100644 index 00000000..491e58ab --- /dev/null +++ b/assets/img/flags/4x3/pk.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pl.svg b/assets/img/flags/4x3/pl.svg new file mode 100644 index 00000000..0fa51452 --- /dev/null +++ b/assets/img/flags/4x3/pl.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/pm.svg b/assets/img/flags/4x3/pm.svg new file mode 100644 index 00000000..19a9330a --- /dev/null +++ b/assets/img/flags/4x3/pm.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/pn.svg b/assets/img/flags/4x3/pn.svg new file mode 100644 index 00000000..07958aca --- /dev/null +++ b/assets/img/flags/4x3/pn.svg @@ -0,0 +1,53 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pr.svg b/assets/img/flags/4x3/pr.svg new file mode 100644 index 00000000..ec51831d --- /dev/null +++ b/assets/img/flags/4x3/pr.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ps.svg b/assets/img/flags/4x3/ps.svg new file mode 100644 index 00000000..b33824a5 --- /dev/null +++ b/assets/img/flags/4x3/ps.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pt.svg b/assets/img/flags/4x3/pt.svg new file mode 100644 index 00000000..445cf7f5 --- /dev/null +++ b/assets/img/flags/4x3/pt.svg @@ -0,0 +1,57 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/pw.svg b/assets/img/flags/4x3/pw.svg new file mode 100644 index 00000000..9f89c5f1 --- /dev/null +++ b/assets/img/flags/4x3/pw.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/4x3/py.svg b/assets/img/flags/4x3/py.svg new file mode 100644 index 00000000..38e2051e --- /dev/null +++ b/assets/img/flags/4x3/py.svg @@ -0,0 +1,157 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/qa.svg b/assets/img/flags/4x3/qa.svg new file mode 100644 index 00000000..901f3fa7 --- /dev/null +++ b/assets/img/flags/4x3/qa.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/re.svg b/assets/img/flags/4x3/re.svg new file mode 100644 index 00000000..64e788e0 --- /dev/null +++ b/assets/img/flags/4x3/re.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/ro.svg b/assets/img/flags/4x3/ro.svg new file mode 100644 index 00000000..fda0f7be --- /dev/null +++ b/assets/img/flags/4x3/ro.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/rs.svg b/assets/img/flags/4x3/rs.svg new file mode 100644 index 00000000..2f971025 --- /dev/null +++ b/assets/img/flags/4x3/rs.svg @@ -0,0 +1,292 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ru.svg b/assets/img/flags/4x3/ru.svg new file mode 100644 index 00000000..cf243011 --- /dev/null +++ b/assets/img/flags/4x3/ru.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/rw.svg b/assets/img/flags/4x3/rw.svg new file mode 100644 index 00000000..06e26ae4 --- /dev/null +++ b/assets/img/flags/4x3/rw.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sa.svg b/assets/img/flags/4x3/sa.svg new file mode 100644 index 00000000..c0a14866 --- /dev/null +++ b/assets/img/flags/4x3/sa.svg @@ -0,0 +1,25 @@ + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sb.svg b/assets/img/flags/4x3/sb.svg new file mode 100644 index 00000000..6066f94c --- /dev/null +++ b/assets/img/flags/4x3/sb.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sc.svg b/assets/img/flags/4x3/sc.svg new file mode 100644 index 00000000..9a46b369 --- /dev/null +++ b/assets/img/flags/4x3/sc.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/sd.svg b/assets/img/flags/4x3/sd.svg new file mode 100644 index 00000000..12818b41 --- /dev/null +++ b/assets/img/flags/4x3/sd.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/se.svg b/assets/img/flags/4x3/se.svg new file mode 100644 index 00000000..8ba745ac --- /dev/null +++ b/assets/img/flags/4x3/se.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/sg.svg b/assets/img/flags/4x3/sg.svg new file mode 100644 index 00000000..c4dd4ac9 --- /dev/null +++ b/assets/img/flags/4x3/sg.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sh-ac.svg b/assets/img/flags/4x3/sh-ac.svg new file mode 100644 index 00000000..22b36583 --- /dev/null +++ b/assets/img/flags/4x3/sh-ac.svg @@ -0,0 +1,689 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sh-hl.svg b/assets/img/flags/4x3/sh-hl.svg new file mode 100644 index 00000000..b92e703f --- /dev/null +++ b/assets/img/flags/4x3/sh-hl.svg @@ -0,0 +1,164 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sh-ta.svg b/assets/img/flags/4x3/sh-ta.svg new file mode 100644 index 00000000..a103aac0 --- /dev/null +++ b/assets/img/flags/4x3/sh-ta.svg @@ -0,0 +1,76 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sh.svg b/assets/img/flags/4x3/sh.svg new file mode 100644 index 00000000..7aba0aec --- /dev/null +++ b/assets/img/flags/4x3/sh.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/si.svg b/assets/img/flags/4x3/si.svg new file mode 100644 index 00000000..66a390dc --- /dev/null +++ b/assets/img/flags/4x3/si.svg @@ -0,0 +1,18 @@ + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sj.svg b/assets/img/flags/4x3/sj.svg new file mode 100644 index 00000000..bb2799ce --- /dev/null +++ b/assets/img/flags/4x3/sj.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/sk.svg b/assets/img/flags/4x3/sk.svg new file mode 100644 index 00000000..81476940 --- /dev/null +++ b/assets/img/flags/4x3/sk.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/sl.svg b/assets/img/flags/4x3/sl.svg new file mode 100644 index 00000000..a07baf75 --- /dev/null +++ b/assets/img/flags/4x3/sl.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/sm.svg b/assets/img/flags/4x3/sm.svg new file mode 100644 index 00000000..00e9286c --- /dev/null +++ b/assets/img/flags/4x3/sm.svg @@ -0,0 +1,75 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sn.svg b/assets/img/flags/4x3/sn.svg new file mode 100644 index 00000000..7c0673d6 --- /dev/null +++ b/assets/img/flags/4x3/sn.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/so.svg b/assets/img/flags/4x3/so.svg new file mode 100644 index 00000000..a581ac63 --- /dev/null +++ b/assets/img/flags/4x3/so.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sr.svg b/assets/img/flags/4x3/sr.svg new file mode 100644 index 00000000..5e71c400 --- /dev/null +++ b/assets/img/flags/4x3/sr.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/ss.svg b/assets/img/flags/4x3/ss.svg new file mode 100644 index 00000000..b257aa0b --- /dev/null +++ b/assets/img/flags/4x3/ss.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/st.svg b/assets/img/flags/4x3/st.svg new file mode 100644 index 00000000..1294bcb7 --- /dev/null +++ b/assets/img/flags/4x3/st.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sv.svg b/assets/img/flags/4x3/sv.svg new file mode 100644 index 00000000..c811e912 --- /dev/null +++ b/assets/img/flags/4x3/sv.svg @@ -0,0 +1,594 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sx.svg b/assets/img/flags/4x3/sx.svg new file mode 100644 index 00000000..18f7a139 --- /dev/null +++ b/assets/img/flags/4x3/sx.svg @@ -0,0 +1,56 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/sy.svg b/assets/img/flags/4x3/sy.svg new file mode 100644 index 00000000..52255505 --- /dev/null +++ b/assets/img/flags/4x3/sy.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/sz.svg b/assets/img/flags/4x3/sz.svg new file mode 100644 index 00000000..294a2cc1 --- /dev/null +++ b/assets/img/flags/4x3/sz.svg @@ -0,0 +1,34 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/tc.svg b/assets/img/flags/4x3/tc.svg new file mode 100644 index 00000000..63f13c35 --- /dev/null +++ b/assets/img/flags/4x3/tc.svg @@ -0,0 +1,50 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/td.svg b/assets/img/flags/4x3/td.svg new file mode 100644 index 00000000..fa3bd927 --- /dev/null +++ b/assets/img/flags/4x3/td.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/tf.svg b/assets/img/flags/4x3/tf.svg new file mode 100644 index 00000000..fba23356 --- /dev/null +++ b/assets/img/flags/4x3/tf.svg @@ -0,0 +1,15 @@ + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/tg.svg b/assets/img/flags/4x3/tg.svg new file mode 100644 index 00000000..c63a6d1a --- /dev/null +++ b/assets/img/flags/4x3/tg.svg @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/th.svg b/assets/img/flags/4x3/th.svg new file mode 100644 index 00000000..1e93a61e --- /dev/null +++ b/assets/img/flags/4x3/th.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/tj.svg b/assets/img/flags/4x3/tj.svg new file mode 100644 index 00000000..9fba246c --- /dev/null +++ b/assets/img/flags/4x3/tj.svg @@ -0,0 +1,22 @@ + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/tk.svg b/assets/img/flags/4x3/tk.svg new file mode 100644 index 00000000..05d3e86c --- /dev/null +++ b/assets/img/flags/4x3/tk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/tl.svg b/assets/img/flags/4x3/tl.svg new file mode 100644 index 00000000..3d0701a2 --- /dev/null +++ b/assets/img/flags/4x3/tl.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/tm.svg b/assets/img/flags/4x3/tm.svg new file mode 100644 index 00000000..8b656cc2 --- /dev/null +++ b/assets/img/flags/4x3/tm.svg @@ -0,0 +1,204 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/tn.svg b/assets/img/flags/4x3/tn.svg new file mode 100644 index 00000000..5735c198 --- /dev/null +++ b/assets/img/flags/4x3/tn.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/to.svg b/assets/img/flags/4x3/to.svg new file mode 100644 index 00000000..d0723370 --- /dev/null +++ b/assets/img/flags/4x3/to.svg @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/assets/img/flags/4x3/tr.svg b/assets/img/flags/4x3/tr.svg new file mode 100644 index 00000000..b96da21f --- /dev/null +++ b/assets/img/flags/4x3/tr.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/tt.svg b/assets/img/flags/4x3/tt.svg new file mode 100644 index 00000000..bc24938c --- /dev/null +++ b/assets/img/flags/4x3/tt.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/tv.svg b/assets/img/flags/4x3/tv.svg new file mode 100644 index 00000000..675210ec --- /dev/null +++ b/assets/img/flags/4x3/tv.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/tw.svg b/assets/img/flags/4x3/tw.svg new file mode 100644 index 00000000..57fd98b4 --- /dev/null +++ b/assets/img/flags/4x3/tw.svg @@ -0,0 +1,34 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/tz.svg b/assets/img/flags/4x3/tz.svg new file mode 100644 index 00000000..a2cfbca4 --- /dev/null +++ b/assets/img/flags/4x3/tz.svg @@ -0,0 +1,13 @@ + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/ua.svg b/assets/img/flags/4x3/ua.svg new file mode 100644 index 00000000..a339eb1b --- /dev/null +++ b/assets/img/flags/4x3/ua.svg @@ -0,0 +1,6 @@ + + + + + + diff --git a/assets/img/flags/4x3/ug.svg b/assets/img/flags/4x3/ug.svg new file mode 100644 index 00000000..737eb2ce --- /dev/null +++ b/assets/img/flags/4x3/ug.svg @@ -0,0 +1,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/um.svg b/assets/img/flags/4x3/um.svg new file mode 100644 index 00000000..9e9eddaa --- /dev/null +++ b/assets/img/flags/4x3/um.svg @@ -0,0 +1,9 @@ + + + + + + + + + diff --git a/assets/img/flags/4x3/un.svg b/assets/img/flags/4x3/un.svg new file mode 100644 index 00000000..e57793bc --- /dev/null +++ b/assets/img/flags/4x3/un.svg @@ -0,0 +1,16 @@ + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/us.svg b/assets/img/flags/4x3/us.svg index d63a3a36..9cfd0c92 100644 --- a/assets/img/flags/4x3/us.svg +++ b/assets/img/flags/4x3/us.svg @@ -6,4 +6,4 @@ - \ No newline at end of file + diff --git a/assets/img/flags/4x3/uy.svg b/assets/img/flags/4x3/uy.svg new file mode 100644 index 00000000..62c36f8e --- /dev/null +++ b/assets/img/flags/4x3/uy.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/uz.svg b/assets/img/flags/4x3/uz.svg new file mode 100644 index 00000000..0ccca1b1 --- /dev/null +++ b/assets/img/flags/4x3/uz.svg @@ -0,0 +1,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/va.svg b/assets/img/flags/4x3/va.svg new file mode 100644 index 00000000..87e0fbbd --- /dev/null +++ b/assets/img/flags/4x3/va.svg @@ -0,0 +1,190 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/vc.svg b/assets/img/flags/4x3/vc.svg new file mode 100644 index 00000000..f26c2d8d --- /dev/null +++ b/assets/img/flags/4x3/vc.svg @@ -0,0 +1,8 @@ + + + + + + + + diff --git a/assets/img/flags/4x3/ve.svg b/assets/img/flags/4x3/ve.svg new file mode 100644 index 00000000..314e7f5f --- /dev/null +++ b/assets/img/flags/4x3/ve.svg @@ -0,0 +1,26 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/vg.svg b/assets/img/flags/4x3/vg.svg new file mode 100644 index 00000000..0ee90fb2 --- /dev/null +++ b/assets/img/flags/4x3/vg.svg @@ -0,0 +1,59 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/vi.svg b/assets/img/flags/4x3/vi.svg new file mode 100644 index 00000000..42702577 --- /dev/null +++ b/assets/img/flags/4x3/vi.svg @@ -0,0 +1,28 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/vn.svg b/assets/img/flags/4x3/vn.svg new file mode 100644 index 00000000..7e4bac8f --- /dev/null +++ b/assets/img/flags/4x3/vn.svg @@ -0,0 +1,11 @@ + + + + + + + + + + + diff --git a/assets/img/flags/4x3/vu.svg b/assets/img/flags/4x3/vu.svg new file mode 100644 index 00000000..91e1236a --- /dev/null +++ b/assets/img/flags/4x3/vu.svg @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/wf.svg b/assets/img/flags/4x3/wf.svg new file mode 100644 index 00000000..054c57df --- /dev/null +++ b/assets/img/flags/4x3/wf.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/ws.svg b/assets/img/flags/4x3/ws.svg new file mode 100644 index 00000000..0e758a7a --- /dev/null +++ b/assets/img/flags/4x3/ws.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/xk.svg b/assets/img/flags/4x3/xk.svg new file mode 100644 index 00000000..551e7a41 --- /dev/null +++ b/assets/img/flags/4x3/xk.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/xx.svg b/assets/img/flags/4x3/xx.svg new file mode 100644 index 00000000..9333be36 --- /dev/null +++ b/assets/img/flags/4x3/xx.svg @@ -0,0 +1,4 @@ + + + + diff --git a/assets/img/flags/4x3/ye.svg b/assets/img/flags/4x3/ye.svg new file mode 100644 index 00000000..1c9e6d63 --- /dev/null +++ b/assets/img/flags/4x3/ye.svg @@ -0,0 +1,7 @@ + + + + + + + diff --git a/assets/img/flags/4x3/yt.svg b/assets/img/flags/4x3/yt.svg new file mode 100644 index 00000000..e7776b30 --- /dev/null +++ b/assets/img/flags/4x3/yt.svg @@ -0,0 +1,5 @@ + + + + + diff --git a/assets/img/flags/4x3/za.svg b/assets/img/flags/4x3/za.svg new file mode 100644 index 00000000..d563adb9 --- /dev/null +++ b/assets/img/flags/4x3/za.svg @@ -0,0 +1,17 @@ + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/zm.svg b/assets/img/flags/4x3/zm.svg new file mode 100644 index 00000000..13239f5e --- /dev/null +++ b/assets/img/flags/4x3/zm.svg @@ -0,0 +1,27 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/flags/4x3/zw.svg b/assets/img/flags/4x3/zw.svg new file mode 100644 index 00000000..6399ab4a --- /dev/null +++ b/assets/img/flags/4x3/zw.svg @@ -0,0 +1,21 @@ + + + + + + + + + + + + + + + + + + + + + diff --git a/assets/img/homeslides/DSC_1551.jpg b/assets/img/homeslides/DSC_1551.jpg new file mode 100644 index 00000000..b467caad Binary files /dev/null and b/assets/img/homeslides/DSC_1551.jpg differ diff --git a/assets/img/homeslides/MG_9700.jpg b/assets/img/homeslides/MG_9700.jpg new file mode 100644 index 00000000..75ab9419 Binary files /dev/null and b/assets/img/homeslides/MG_9700.jpg differ diff --git a/assets/img/homeslides/Nature_Cover_2010.png b/assets/img/homeslides/Nature_Cover_2010.png new file mode 100644 index 00000000..82e81bb3 Binary files /dev/null and b/assets/img/homeslides/Nature_Cover_2010.png differ diff --git a/assets/img/homeslides/Virus_1.png b/assets/img/homeslides/Virus_1.png new file mode 100644 index 00000000..988f3e6e Binary files /dev/null and b/assets/img/homeslides/Virus_1.png differ diff --git a/assets/img/logopic/.DS_Store b/assets/img/logopic/.DS_Store new file mode 100644 index 00000000..5008ddfc Binary files /dev/null and b/assets/img/logopic/.DS_Store differ diff --git a/assets/img/logopic/Logo_DCB.png b/assets/img/logopic/Logo_DCB.png new file mode 100755 index 00000000..011cc674 Binary files /dev/null and b/assets/img/logopic/Logo_DCB.png differ diff --git a/assets/img/logopic/Uniandes.png b/assets/img/logopic/Uniandes.png new file mode 100755 index 00000000..66a1b86d Binary files /dev/null and b/assets/img/logopic/Uniandes.png differ diff --git a/assets/img/logopic/cabana.thumbnail b/assets/img/logopic/cabana.thumbnail new file mode 100644 index 00000000..03bdd2e6 Binary files /dev/null and b/assets/img/logopic/cabana.thumbnail differ diff --git a/assets/img/newspic/.DS_Store b/assets/img/newspic/.DS_Store new file mode 100644 index 00000000..fec7a1ae Binary files /dev/null and b/assets/img/newspic/.DS_Store differ diff --git a/assets/img/newspic/Virus_2.png b/assets/img/newspic/Virus_2.png new file mode 100644 index 00000000..5c1918a5 Binary files /dev/null and b/assets/img/newspic/Virus_2.png differ diff --git a/assets/img/newspic/andean.png b/assets/img/newspic/andean.png new file mode 100644 index 00000000..66d38033 Binary files /dev/null and b/assets/img/newspic/andean.png differ diff --git a/assets/img/picpic/.DS_Store b/assets/img/picpic/.DS_Store new file mode 100644 index 00000000..7284b404 Binary files /dev/null and b/assets/img/picpic/.DS_Store differ diff --git a/assets/img/picpic/gallery/.DS_Store b/assets/img/picpic/gallery/.DS_Store new file mode 100644 index 00000000..5008ddfc Binary files /dev/null and b/assets/img/picpic/gallery/.DS_Store differ diff --git a/assets/img/picpic/gallery/IMG-20191004-WA0018.jpg b/assets/img/picpic/gallery/IMG-20191004-WA0018.jpg new file mode 100644 index 00000000..94c4aebe Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20191004-WA0018.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20191004-WA0029.jpg b/assets/img/picpic/gallery/IMG-20191004-WA0029.jpg new file mode 100644 index 00000000..7f7bf0ca Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20191004-WA0029.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20191202-WA0092.jpg b/assets/img/picpic/gallery/IMG-20191202-WA0092.jpg new file mode 100644 index 00000000..b3d2c570 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20191202-WA0092.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20201211-WA0018.jpg b/assets/img/picpic/gallery/IMG-20201211-WA0018.jpg new file mode 100644 index 00000000..a7c92089 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20201211-WA0018.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20201211-WA0022.jpg b/assets/img/picpic/gallery/IMG-20201211-WA0022.jpg new file mode 100644 index 00000000..c72dc23b Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20201211-WA0022.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20201212-WA0002.jpg b/assets/img/picpic/gallery/IMG-20201212-WA0002.jpg new file mode 100644 index 00000000..1f4769f3 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20201212-WA0002.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20211217-WA0017.jpg b/assets/img/picpic/gallery/IMG-20211217-WA0017.jpg new file mode 100644 index 00000000..607f5627 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20211217-WA0017.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20220331-WA0020.jpg b/assets/img/picpic/gallery/IMG-20220331-WA0020.jpg new file mode 100644 index 00000000..11c8fb43 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20220331-WA0020.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20220617-WA0010.jpg b/assets/img/picpic/gallery/IMG-20220617-WA0010.jpg new file mode 100644 index 00000000..ebfcc599 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20220617-WA0010.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20221007-WA0030.jpg b/assets/img/picpic/gallery/IMG-20221007-WA0030.jpg new file mode 100644 index 00000000..75773a4c Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20221007-WA0030.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20221007-WA0033.jpg b/assets/img/picpic/gallery/IMG-20221007-WA0033.jpg new file mode 100644 index 00000000..40708b32 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20221007-WA0033.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20221007-WA0035.jpg b/assets/img/picpic/gallery/IMG-20221007-WA0035.jpg new file mode 100644 index 00000000..04585edb Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20221007-WA0035.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20230321-WA0057.jpg b/assets/img/picpic/gallery/IMG-20230321-WA0057.jpg new file mode 100644 index 00000000..a291b8af Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20230321-WA0057.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20230325-WA0008.jpg b/assets/img/picpic/gallery/IMG-20230325-WA0008.jpg new file mode 100644 index 00000000..36df28a7 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20230325-WA0008.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20230511-WA0010.jpg b/assets/img/picpic/gallery/IMG-20230511-WA0010.jpg new file mode 100644 index 00000000..77d5b0fa Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20230511-WA0010.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20230608-WA0010.jpg b/assets/img/picpic/gallery/IMG-20230608-WA0010.jpg new file mode 100644 index 00000000..7ca2f555 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20230608-WA0010.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20230608-WA0014.jpg b/assets/img/picpic/gallery/IMG-20230608-WA0014.jpg new file mode 100644 index 00000000..475953a6 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20230608-WA0014.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20230608-WA0016.jpg b/assets/img/picpic/gallery/IMG-20230608-WA0016.jpg new file mode 100644 index 00000000..f8bb033b Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20230608-WA0016.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20231206-WA0004.jpg b/assets/img/picpic/gallery/IMG-20231206-WA0004.jpg new file mode 100644 index 00000000..a493482b Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20231206-WA0004.jpg differ diff --git a/assets/img/picpic/gallery/IMG-20231214-WA0019.jpg b/assets/img/picpic/gallery/IMG-20231214-WA0019.jpg new file mode 100644 index 00000000..406f0682 Binary files /dev/null and b/assets/img/picpic/gallery/IMG-20231214-WA0019.jpg differ diff --git a/assets/img/picpic/gens/.DS_Store b/assets/img/picpic/gens/.DS_Store new file mode 100644 index 00000000..5008ddfc Binary files /dev/null and b/assets/img/picpic/gens/.DS_Store differ diff --git a/assets/img/picpic/gens/2014.jpg b/assets/img/picpic/gens/2014.jpg new file mode 100644 index 00000000..2a98afff Binary files /dev/null and b/assets/img/picpic/gens/2014.jpg differ diff --git a/assets/img/picpic/gens/2015.jpg b/assets/img/picpic/gens/2015.jpg new file mode 100644 index 00000000..a0efca8c Binary files /dev/null and b/assets/img/picpic/gens/2015.jpg differ diff --git a/assets/img/picpic/gens/2016.jpg b/assets/img/picpic/gens/2016.jpg new file mode 100644 index 00000000..4db0428f Binary files /dev/null and b/assets/img/picpic/gens/2016.jpg differ diff --git a/assets/img/picpic/gens/2017.jpg b/assets/img/picpic/gens/2017.jpg new file mode 100644 index 00000000..4b6a4165 Binary files /dev/null and b/assets/img/picpic/gens/2017.jpg differ diff --git a/assets/img/picpic/gens/2018.jpg b/assets/img/picpic/gens/2018.jpg new file mode 100644 index 00000000..aa070635 Binary files /dev/null and b/assets/img/picpic/gens/2018.jpg differ diff --git a/assets/img/picpic/gens/2019.jpg b/assets/img/picpic/gens/2019.jpg new file mode 100644 index 00000000..bffd5dae Binary files /dev/null and b/assets/img/picpic/gens/2019.jpg differ diff --git a/assets/img/picpic/gens/2022.jpg b/assets/img/picpic/gens/2022.jpg new file mode 100644 index 00000000..ca99d4fd Binary files /dev/null and b/assets/img/picpic/gens/2022.jpg differ diff --git a/assets/img/picpic/gens/2023.jpg b/assets/img/picpic/gens/2023.jpg new file mode 100644 index 00000000..f6e6b2eb Binary files /dev/null and b/assets/img/picpic/gens/2023.jpg differ diff --git a/assets/img/picpic/gens/2024.jpg b/assets/img/picpic/gens/2024.jpg new file mode 100644 index 00000000..b2d3f545 Binary files /dev/null and b/assets/img/picpic/gens/2024.jpg differ diff --git a/assets/img/pubpic/covid.jpg b/assets/img/pubpic/covid.jpg new file mode 100644 index 00000000..40a74e18 Binary files /dev/null and b/assets/img/pubpic/covid.jpg differ diff --git a/assets/img/pubpic/tools_viromes.png b/assets/img/pubpic/tools_viromes.png new file mode 100644 index 00000000..bba13cd3 Binary files /dev/null and b/assets/img/pubpic/tools_viromes.png differ diff --git a/assets/img/pubpic/twins.png b/assets/img/pubpic/twins.png new file mode 100644 index 00000000..787a9dda Binary files /dev/null and b/assets/img/pubpic/twins.png differ diff --git a/assets/img/pubpic/virify.png b/assets/img/pubpic/virify.png new file mode 100644 index 00000000..55392b25 Binary files /dev/null and b/assets/img/pubpic/virify.png differ diff --git a/assets/img/research/MicEco.png b/assets/img/research/MicEco.png new file mode 100644 index 00000000..ded4123b Binary files /dev/null and b/assets/img/research/MicEco.png differ diff --git a/assets/img/research/Nature_Cover_2010.jpg b/assets/img/research/Nature_Cover_2010.jpg new file mode 100644 index 00000000..57fa2ecf Binary files /dev/null and b/assets/img/research/Nature_Cover_2010.jpg differ diff --git a/assets/img/research/Virus_2.png b/assets/img/research/Virus_2.png new file mode 100644 index 00000000..5c1918a5 Binary files /dev/null and b/assets/img/research/Virus_2.png differ diff --git a/assets/img/teampic/BCEM-22.jpg b/assets/img/teampic/BCEM-22.jpg new file mode 100644 index 00000000..02959f58 Binary files /dev/null and b/assets/img/teampic/BCEM-22.jpg differ diff --git a/assets/img/teampic/alejandro_castellanos.jpg b/assets/img/teampic/alejandro_castellanos.jpg new file mode 100644 index 00000000..ab8341b6 Binary files /dev/null and b/assets/img/teampic/alejandro_castellanos.jpg differ diff --git a/assets/img/teampic/bio_photo.jpg b/assets/img/teampic/bio_photo.jpg new file mode 100755 index 00000000..00084517 Binary files /dev/null and b/assets/img/teampic/bio_photo.jpg differ diff --git a/assets/img/teampic/camilo-garcia.jpeg b/assets/img/teampic/camilo-garcia.jpeg new file mode 100644 index 00000000..b6f918a0 Binary files /dev/null and b/assets/img/teampic/camilo-garcia.jpeg differ diff --git a/assets/img/teampic/luisa_sacristan.jpg b/assets/img/teampic/luisa_sacristan.jpg new file mode 100644 index 00000000..fb56a5c9 Binary files /dev/null and b/assets/img/teampic/luisa_sacristan.jpg differ diff --git a/assets/img/teampic/maria_fernanda_pena.jpg b/assets/img/teampic/maria_fernanda_pena.jpg new file mode 100644 index 00000000..16d766b2 Binary files /dev/null and b/assets/img/teampic/maria_fernanda_pena.jpg differ diff --git a/assets/img/teampic/nathalia_portilla.jpg b/assets/img/teampic/nathalia_portilla.jpg new file mode 100644 index 00000000..5d8990e0 Binary files /dev/null and b/assets/img/teampic/nathalia_portilla.jpg differ diff --git a/assets/json/resume_pt-br.json b/assets/json/resume_es-co.json similarity index 100% rename from assets/json/resume_pt-br.json rename to assets/json/resume_es-co.json diff --git a/assets/pdf/pt-br/example_pdf.pdf b/assets/pdf/es-co/example_pdf.pdf similarity index 100% rename from assets/pdf/pt-br/example_pdf.pdf rename to assets/pdf/es-co/example_pdf.pdf