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Convert More SRN Models #8

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5 of 6 tasks
kwabenantim opened this issue Feb 26, 2025 · 0 comments · May be fixed by #11
Open
5 of 6 tasks

Convert More SRN Models #8

kwabenantim opened this issue Feb 26, 2025 · 0 comments · May be fixed by #11
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enhancement New feature or request

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kwabenantim commented Feb 26, 2025 •
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Summary

Following #3 convert Tan 2014, VanLeeuwen 2007 and others.

To Do

  • Convert
    • Tan 2014
    • VanLeeuwen 2007
    • VanLeeuwen 2007 Non-Dim
  • Replace GetM() etc. with the OdeSystemInformation form e.g. GetVariable("M") or GetParameter("M") etc. See comment.
    • Note: GetM() etc. are in the main Chaste trunk's Goldbeter1991SrnModel, not in the generated code.
  • Add C++ tests for converted models
@kwabenantim kwabenantim added the enhancement New feature or request label Feb 26, 2025
@kwabenantim kwabenantim self-assigned this Feb 26, 2025
kwabenantim added a commit that referenced this issue Feb 26, 2025
@kwabenantim
#8 Add SRN reference models
829bd79
@kwabenantim kwabenantim linked a pull request Feb 26, 2025 that will close this issue
Open
kwabenantim added a commit that referenced this issue Feb 26, 2025
@kwabenantim
#8 Separate private and public methods
3f2ab24
kwabenantim added a commit that referenced this issue Feb 26, 2025
@kwabenantim
#8 Convert Tan2014SrnModel
4e433d2
kwabenantim added a commit that referenced this issue Feb 26, 2025
@kwabenantim
#8 Convert VanLeeuwen2007
f328d1b
kwabenantim added a commit that referenced this issue Feb 26, 2025
@kwabenantim
#8 Convert VanLeeuwen2007NonDim
f656423
kwabenantim added a commit that referenced this issue Mar 3, 2025
@kwabenantim
#8 Add C++ code tests
986a535
kwabenantim added a commit that referenced this issue Mar 3, 2025
@kwabenantim
#8 Fix num_state_vars
e1c6093
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Convert SRN models Chaste/chaste-codegen-sbml
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