diff --git a/log-files/2025-02-12_21-17-58/Test1D3DLinearEllipticSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/Test1D3DLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..6ab6fac8b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/Test1D3DLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25082== Memcheck, a memory error detector +==25082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25082== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25082== Parent PID: 24057 +==25082== +==25082== +==25082== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25082== Open file descriptor 12: +==25082== at 0x84EF07D: pipe (pipe.c:29) +==25082== by 0x104DE07D: ??? +==25082== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25082== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25082== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25082== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25082== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25082== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25082== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25082== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25082== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25082== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25082== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25082== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==25082== +==25082== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25082== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25082== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25082== by 0x7D49822: ??? +==25082== by 0x7D4996F: ??? +==25082== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25082== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25082== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25082== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25082== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25082== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25082== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25082== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25082== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25082== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25082== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25082== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25082== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25082== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25082== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18) +==25082== +==25082== Open file descriptor 158: +==25082== +==25082== +==25082== Open file descriptor 155: +==25082== +==25082== +==25082== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt +==25082== +==25082== +==25082== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25082== +==25082== +==25082== +==25082== HEAP SUMMARY: +==25082== in use at exit: 618,274 bytes in 8,238 blocks +==25082== total heap usage: 51,119 allocs, 42,881 frees, 1,339,259,114 bytes allocated +==25082== +==25082== LEAK SUMMARY: +==25082== definitely lost: 0 bytes in 0 blocks +==25082== indirectly lost: 0 bytes in 0 blocks +==25082== possibly lost: 0 bytes in 0 blocks +==25082== still reachable: 24 bytes in 2 blocks +==25082== suppressed: 618,250 bytes in 8,236 blocks +==25082== Reachable blocks (those to which a pointer was found) are not shown. +==25082== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25082== +==25082== For lists of detected and suppressed errors, rerun with: -s +==25082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt b/log-files/2025-02-12_21-17-58/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt new file mode 100644 index 000000000..c3a81d9ce --- /dev/null +++ b/log-files/2025-02-12_21-17-58/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt @@ -0,0 +1,73 @@ +==43876== Memcheck, a memory error detector +==43876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43876== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info +==43876== Parent PID: 24057 +==43876== +==43876== +==43876== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43876== Open file descriptor 12: +==43876== at 0xA7CE07D: pipe (pipe.c:29) +==43876== by 0x1432F07D: ??? +==43876== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43876== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43876== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43876== by 0xAB57D38: PetscInitialize (pinit.c:924) +==43876== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43876== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43876== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43876== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43876== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43876== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43876== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43876== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43876== +==43876== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43876== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39) +==43876== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43876== by 0xA0F5822: ??? +==43876== by 0xA0F596F: ??? +==43876== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43876== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43876== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43876== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43876== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43876== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43876== by 0xAB57D38: PetscInitialize (pinit.c:924) +==43876== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43876== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43876== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43876== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43876== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43876== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43876== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43876== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18) +==43876== +==43876== Open file descriptor 158: +==43876== +==43876== +==43876== Open file descriptor 155: +==43876== +==43876== +==43876== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt +==43876== +==43876== +==43876== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43876== +==43876== +==43876== +==43876== HEAP SUMMARY: +==43876== in use at exit: 618,761 bytes in 8,244 blocks +==43876== total heap usage: 319,601 allocs, 311,357 frees, 1,398,098,971 bytes allocated +==43876== +==43876== LEAK SUMMARY: +==43876== definitely lost: 0 bytes in 0 blocks +==43876== indirectly lost: 0 bytes in 0 blocks +==43876== possibly lost: 0 bytes in 0 blocks +==43876== still reachable: 24 bytes in 2 blocks +==43876== suppressed: 618,737 bytes in 8,242 blocks +==43876== Reachable blocks (those to which a pointer was found) are not shown. +==43876== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43876== +==43876== For lists of detected and suppressed errors, rerun with: -s +==43876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34) diff --git a/log-files/2025-02-12_21-17-58/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt b/log-files/2025-02-12_21-17-58/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt new file mode 100644 index 000000000..b58ae1106 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==26319== Memcheck, a memory error detector +==26319== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26319== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26319== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info +==26319== Parent PID: 24057 +==26319== +==26319== +==26319== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26319== Open file descriptor 12: +==26319== at 0xF80107D: pipe (pipe.c:29) +==26319== by 0x196B407D: ??? +==26319== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26319== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26319== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26319== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26319== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26319== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26319== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26319== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26319== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26319== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26319== +==26319== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26319== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==26319== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26319== by 0xF144822: ??? +==26319== by 0xF14496F: ??? +==26319== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26319== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26319== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26319== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26319== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26319== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26319== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26319== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26319== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26319== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26319== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26319== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26319== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26319== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) +==26319== +==26319== Open file descriptor 158: +==26319== +==26319== +==26319== Open file descriptor 155: +==26319== +==26319== +==26319== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt +==26319== +==26319== +==26319== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26319== +==26319== +==26319== +==26319== HEAP SUMMARY: +==26319== in use at exit: 618,370 bytes in 8,239 blocks +==26319== total heap usage: 1,124,535 allocs, 1,116,296 frees, 1,415,928,852 bytes allocated +==26319== +==26319== LEAK SUMMARY: +==26319== definitely lost: 0 bytes in 0 blocks +==26319== indirectly lost: 0 bytes in 0 blocks +==26319== possibly lost: 0 bytes in 0 blocks +==26319== still reachable: 56 bytes in 3 blocks +==26319== suppressed: 618,314 bytes in 8,236 blocks +==26319== Reachable blocks (those to which a pointer was found) are not shown. +==26319== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26319== +==26319== For lists of detected and suppressed errors, rerun with: -s +==26319== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractAnalyticJacobian_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractAnalyticJacobian_valgrind.txt new file mode 100644 index 000000000..b5a27cddc --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractAnalyticJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==25007== Memcheck, a memory error detector +==25007== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25007== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25007== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info +==25007== Parent PID: 24057 +==25007== +==25007== +==25007== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25007== Open file descriptor 12: +==25007== at 0x4F1007D: pipe (pipe.c:29) +==25007== by 0xB1E607D: ??? +==25007== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25007== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25007== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25007== by 0x5308D38: PetscInitialize (pinit.c:924) +==25007== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25007== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25007== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25007== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25007== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25007== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25007== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25007== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==25007== +==25007== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25007== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==25007== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25007== by 0x4B7C822: ??? +==25007== by 0x4B7C96F: ??? +==25007== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25007== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25007== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25007== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25007== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25007== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25007== by 0x5308D38: PetscInitialize (pinit.c:924) +==25007== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25007== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25007== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25007== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25007== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25007== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25007== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25007== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18) +==25007== +==25007== Open file descriptor 158: +==25007== +==25007== +==25007== Open file descriptor 155: +==25007== +==25007== +==25007== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt +==25007== +==25007== +==25007== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25007== +==25007== +==25007== +==25007== HEAP SUMMARY: +==25007== in use at exit: 617,938 bytes in 8,238 blocks +==25007== total heap usage: 45,031 allocs, 36,793 frees, 1,338,170,476 bytes allocated +==25007== +==25007== LEAK SUMMARY: +==25007== definitely lost: 0 bytes in 0 blocks +==25007== indirectly lost: 0 bytes in 0 blocks +==25007== possibly lost: 0 bytes in 0 blocks +==25007== still reachable: 24 bytes in 2 blocks +==25007== suppressed: 617,914 bytes in 8,236 blocks +==25007== Reachable blocks (those to which a pointer was found) are not shown. +==25007== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25007== +==25007== For lists of detected and suppressed errors, rerun with: -s +==25007== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractContinuumMechanicsAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractContinuumMechanicsAssembler_valgrind.txt new file mode 100644 index 000000000..892da290d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractContinuumMechanicsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25336== Memcheck, a memory error detector +==25336== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25336== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25336== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info +==25336== Parent PID: 24057 +==25336== +==25336== +==25336== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25336== Open file descriptor 12: +==25336== at 0x84EF07D: pipe (pipe.c:29) +==25336== by 0x104DE07D: ??? +==25336== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25336== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25336== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25336== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25336== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25336== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25336== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25336== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25336== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25336== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25336== +==25336== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25336== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25336== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25336== by 0x7D49822: ??? +==25336== by 0x7D4996F: ??? +==25336== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25336== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25336== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25336== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25336== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25336== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25336== by 0x1507F2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25336== by 0x14B24D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25336== by 0x14E462: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25336== by 0x14E302: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25336== by 0x14E999: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25336== by 0x149675: main (TestAbstractContinuumMechanicsAssembler.cpp:19) +==25336== +==25336== Open file descriptor 158: +==25336== +==25336== +==25336== Open file descriptor 155: +==25336== +==25336== +==25336== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContinuumMechanicsAssembler_valgrind.txt +==25336== +==25336== +==25336== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25336== +==25336== +==25336== +==25336== HEAP SUMMARY: +==25336== in use at exit: 618,274 bytes in 8,238 blocks +==25336== total heap usage: 50,432 allocs, 42,194 frees, 1,339,924,812 bytes allocated +==25336== +==25336== LEAK SUMMARY: +==25336== definitely lost: 0 bytes in 0 blocks +==25336== indirectly lost: 0 bytes in 0 blocks +==25336== possibly lost: 0 bytes in 0 blocks +==25336== still reachable: 24 bytes in 2 blocks +==25336== suppressed: 618,250 bytes in 8,236 blocks +==25336== Reachable blocks (those to which a pointer was found) are not shown. +==25336== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25336== +==25336== For lists of detected and suppressed errors, rerun with: -s +==25336== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractContractionCellFactory_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractContractionCellFactory_valgrind.txt new file mode 100644 index 000000000..701238a29 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractContractionCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43998== Memcheck, a memory error detector +==43998== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43998== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43998== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractContractionCellFactory -malloc_debug -malloc_dump -memory_info +==43998== Parent PID: 24057 +==43998== +==43998== +==43998== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43998== Open file descriptor 12: +==43998== at 0xA8DB07D: pipe (pipe.c:29) +==43998== by 0x1432F07D: ??? +==43998== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43998== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43998== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43998== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43998== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43998== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43998== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43998== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43998== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43998== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43998== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43998== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43998== +==43998== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43998== at 0xA8DFA1C: __open_nocancel (open64_nocancel.c:39) +==43998== by 0xA863BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43998== by 0xA202822: ??? +==43998== by 0xA20296F: ??? +==43998== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43998== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43998== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43998== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43998== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43998== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43998== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43998== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43998== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43998== by 0x11F78E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43998== by 0x11A553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43998== by 0x11C978: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43998== by 0x11C873: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43998== by 0x11CE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43998== by 0x118D55: main (TestAbstractContractionCellFactory.cpp:18) +==43998== +==43998== Open file descriptor 158: +==43998== +==43998== +==43998== Open file descriptor 155: +==43998== +==43998== +==43998== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractContractionCellFactory_valgrind.txt +==43998== +==43998== +==43998== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43998== +==43998== +==43998== +==43998== HEAP SUMMARY: +==43998== in use at exit: 618,834 bytes in 8,248 blocks +==43998== total heap usage: 171,934 allocs, 163,686 frees, 1,363,065,684 bytes allocated +==43998== +==43998== LEAK SUMMARY: +==43998== definitely lost: 0 bytes in 0 blocks +==43998== indirectly lost: 0 bytes in 0 blocks +==43998== possibly lost: 0 bytes in 0 blocks +==43998== still reachable: 24 bytes in 2 blocks +==43998== suppressed: 618,810 bytes in 8,246 blocks +==43998== Reachable blocks (those to which a pointer was found) are not shown. +==43998== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43998== +==43998== For lists of detected and suppressed errors, rerun with: -s +==43998== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractCvodeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractCvodeSystem_valgrind.txt new file mode 100644 index 000000000..9b150a092 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractCvodeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24990== Memcheck, a memory error detector +==24990== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24990== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24990== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractCvodeSystem -malloc_debug -malloc_dump -memory_info +==24990== Parent PID: 24057 +==24990== +==24990== +==24990== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24990== Open file descriptor 12: +==24990== at 0x643E07D: pipe (pipe.c:29) +==24990== by 0xB1CA07D: ??? +==24990== by 0x8CC44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24990== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24990== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24990== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24990== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24990== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24990== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24990== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24990== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24990== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24990== +==24990== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24990== at 0x6442A1C: __open_nocancel (open64_nocancel.c:39) +==24990== by 0x63C6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24990== by 0x4B7C822: ??? +==24990== by 0x4B7C96F: ??? +==24990== by 0x8D696DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0x8D69938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0x8D1F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24990== by 0x8CC42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24990== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24990== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24990== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24990== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24990== by 0x136DA1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24990== by 0x131171: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24990== by 0x133ED4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24990== by 0x133D74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24990== by 0x13440B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24990== by 0x12EFD5: main (TestAbstractCvodeSystem.cpp:19) +==24990== +==24990== Open file descriptor 158: +==24990== +==24990== +==24990== Open file descriptor 155: +==24990== +==24990== +==24990== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractCvodeSystem_valgrind.txt +==24990== +==24990== +==24990== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24990== +==24990== +==24990== +==24990== HEAP SUMMARY: +==24990== in use at exit: 617,922 bytes in 8,238 blocks +==24990== total heap usage: 46,489 allocs, 38,251 frees, 1,338,366,928 bytes allocated +==24990== +==24990== LEAK SUMMARY: +==24990== definitely lost: 0 bytes in 0 blocks +==24990== indirectly lost: 0 bytes in 0 blocks +==24990== possibly lost: 0 bytes in 0 blocks +==24990== still reachable: 24 bytes in 2 blocks +==24990== suppressed: 617,898 bytes in 8,236 blocks +==24990== Reachable blocks (those to which a pointer was found) are not shown. +==24990== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24990== +==24990== For lists of detected and suppressed errors, rerun with: -s +==24990== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractFeCableIntegralAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractFeCableIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..e749cf0f1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractFeCableIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25218== Memcheck, a memory error detector +==25218== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25218== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25218== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeCableIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25218== Parent PID: 24057 +==25218== +==25218== +==25218== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25218== Open file descriptor 12: +==25218== at 0x84EF07D: pipe (pipe.c:29) +==25218== by 0x104DE07D: ??? +==25218== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25218== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25218== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25218== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25218== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25218== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25218== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25218== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25218== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25218== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25218== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25218== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25218== +==25218== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25218== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25218== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25218== by 0x7D49822: ??? +==25218== by 0x7D4996F: ??? +==25218== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25218== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25218== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25218== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25218== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25218== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25218== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25218== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25218== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25218== by 0x136062: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25218== by 0x130C2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25218== by 0x133CD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25218== by 0x133B72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25218== by 0x134209: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25218== by 0x12F055: main (TestAbstractFeCableIntegralAssembler.cpp:19) +==25218== +==25218== Open file descriptor 158: +==25218== +==25218== +==25218== Open file descriptor 155: +==25218== +==25218== +==25218== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeCableIntegralAssembler_valgrind.txt +==25218== +==25218== +==25218== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25218== +==25218== +==25218== +==25218== HEAP SUMMARY: +==25218== in use at exit: 618,274 bytes in 8,238 blocks +==25218== total heap usage: 59,953 allocs, 51,715 frees, 1,339,372,188 bytes allocated +==25218== +==25218== LEAK SUMMARY: +==25218== definitely lost: 0 bytes in 0 blocks +==25218== indirectly lost: 0 bytes in 0 blocks +==25218== possibly lost: 0 bytes in 0 blocks +==25218== still reachable: 24 bytes in 2 blocks +==25218== suppressed: 618,250 bytes in 8,236 blocks +==25218== Reachable blocks (those to which a pointer was found) are not shown. +==25218== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25218== +==25218== For lists of detected and suppressed errors, rerun with: -s +==25218== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..6b09a17f8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25232== Memcheck, a memory error detector +==25232== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25232== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25232== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeSurfaceIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25232== Parent PID: 24057 +==25232== +==25232== +==25232== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25232== Open file descriptor 12: +==25232== at 0x84EF07D: pipe (pipe.c:29) +==25232== by 0x104DE07D: ??? +==25232== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25232== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25232== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25232== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25232== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25232== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25232== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25232== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25232== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25232== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25232== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25232== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25232== +==25232== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25232== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25232== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25232== by 0x7D49822: ??? +==25232== by 0x7D4996F: ??? +==25232== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25232== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25232== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25232== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25232== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25232== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25232== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25232== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25232== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25232== by 0x12D738: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25232== by 0x128933: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25232== by 0x12B4AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25232== by 0x12B3A5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25232== by 0x12B9B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25232== by 0x127135: main (TestAbstractFeSurfaceIntegralAssembler.cpp:18) +==25232== +==25232== Open file descriptor 158: +==25232== +==25232== +==25232== Open file descriptor 155: +==25232== +==25232== +==25232== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeSurfaceIntegralAssembler_valgrind.txt +==25232== +==25232== +==25232== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25232== +==25232== +==25232== +==25232== HEAP SUMMARY: +==25232== in use at exit: 618,274 bytes in 8,238 blocks +==25232== total heap usage: 47,971 allocs, 39,733 frees, 1,338,474,643 bytes allocated +==25232== +==25232== LEAK SUMMARY: +==25232== definitely lost: 0 bytes in 0 blocks +==25232== indirectly lost: 0 bytes in 0 blocks +==25232== possibly lost: 0 bytes in 0 blocks +==25232== still reachable: 24 bytes in 2 blocks +==25232== suppressed: 618,250 bytes in 8,236 blocks +==25232== Reachable blocks (those to which a pointer was found) are not shown. +==25232== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25232== +==25232== For lists of detected and suppressed errors, rerun with: -s +==25232== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractFeVolumeIntegralAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractFeVolumeIntegralAssembler_valgrind.txt new file mode 100644 index 000000000..2a3ddf997 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractFeVolumeIntegralAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25233== Memcheck, a memory error detector +==25233== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25233== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25233== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFeVolumeIntegralAssembler -malloc_debug -malloc_dump -memory_info +==25233== Parent PID: 24057 +==25233== +==25233== +==25233== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25233== Open file descriptor 12: +==25233== at 0x84EF07D: pipe (pipe.c:29) +==25233== by 0x104DE07D: ??? +==25233== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25233== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25233== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25233== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25233== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25233== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25233== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25233== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25233== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25233== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25233== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25233== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25233== +==25233== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25233== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25233== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25233== by 0x7D49822: ??? +==25233== by 0x7D4996F: ??? +==25233== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25233== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25233== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25233== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25233== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25233== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25233== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25233== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25233== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25233== by 0x15E73C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25233== by 0x15920D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25233== by 0x15C3AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25233== by 0x15C24C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25233== by 0x15C8E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25233== by 0x157635: main (TestAbstractFeVolumeIntegralAssembler.cpp:19) +==25233== +==25233== Open file descriptor 158: +==25233== +==25233== +==25233== Open file descriptor 155: +==25233== +==25233== +==25233== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFeVolumeIntegralAssembler_valgrind.txt +==25233== +==25233== +==25233== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25233== +==25233== +==25233== +==25233== HEAP SUMMARY: +==25233== in use at exit: 618,274 bytes in 8,238 blocks +==25233== total heap usage: 57,061 allocs, 48,823 frees, 1,339,698,844 bytes allocated +==25233== +==25233== LEAK SUMMARY: +==25233== definitely lost: 0 bytes in 0 blocks +==25233== indirectly lost: 0 bytes in 0 blocks +==25233== possibly lost: 0 bytes in 0 blocks +==25233== still reachable: 24 bytes in 2 blocks +==25233== suppressed: 618,250 bytes in 8,236 blocks +==25233== Reachable blocks (those to which a pointer was found) are not shown. +==25233== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25233== +==25233== For lists of detected and suppressed errors, rerun with: -s +==25233== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractFunctionalCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractFunctionalCalculator_valgrind.txt new file mode 100644 index 000000000..b312a0f43 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractFunctionalCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==25248== Memcheck, a memory error detector +==25248== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25248== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25248== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestAbstractFunctionalCalculator -malloc_debug -malloc_dump -memory_info +==25248== Parent PID: 24057 +==25248== +==25248== +==25248== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25248== Open file descriptor 12: +==25248== at 0x859707D: pipe (pipe.c:29) +==25248== by 0x104DE07D: ??? +==25248== by 0xBE1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25248== by 0x7DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25248== by 0x7D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25248== by 0x6A25D38: PetscInitialize (pinit.c:924) +==25248== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25248== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25248== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25248== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25248== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25248== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25248== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25248== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25248== +==25248== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25248== at 0x859BA1C: __open_nocancel (open64_nocancel.c:39) +==25248== by 0x851FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25248== by 0x7CBA822: ??? +==25248== by 0x7CBA96F: ??? +==25248== by 0xBEBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25248== by 0xBEBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25248== by 0xBE75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25248== by 0xBE1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25248== by 0x7DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25248== by 0x7D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25248== by 0x6A25D38: PetscInitialize (pinit.c:924) +==25248== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25248== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25248== by 0x12B976: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25248== by 0x126B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25248== by 0x1294EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25248== by 0x12938C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25248== by 0x129A23: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25248== by 0x124F75: main (TestAbstractFunctionalCalculator.cpp:19) +==25248== +==25248== Open file descriptor 158: +==25248== +==25248== +==25248== Open file descriptor 155: +==25248== +==25248== +==25248== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractFunctionalCalculator_valgrind.txt +==25248== +==25248== +==25248== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25248== +==25248== +==25248== +==25248== HEAP SUMMARY: +==25248== in use at exit: 618,274 bytes in 8,238 blocks +==25248== total heap usage: 89,964 allocs, 81,726 frees, 1,340,572,214 bytes allocated +==25248== +==25248== LEAK SUMMARY: +==25248== definitely lost: 0 bytes in 0 blocks +==25248== indirectly lost: 0 bytes in 0 blocks +==25248== possibly lost: 0 bytes in 0 blocks +==25248== still reachable: 24 bytes in 2 blocks +==25248== suppressed: 618,250 bytes in 8,236 blocks +==25248== Reachable blocks (those to which a pointer was found) are not shown. +==25248== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25248== +==25248== For lists of detected and suppressed errors, rerun with: -s +==25248== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractIvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..79e5b3faf --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==24975== Memcheck, a memory error detector +==24975== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24975== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24975== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==24975== Parent PID: 24057 +==24975== +==24975== +==24975== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24975== Open file descriptor 12: +==24975== at 0x503907D: pipe (pipe.c:29) +==24975== by 0xB1E607D: ??? +==24975== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24975== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24975== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24975== by 0x5308D38: PetscInitialize (pinit.c:924) +==24975== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24975== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24975== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24975== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24975== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24975== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24975== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24975== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24975== +==24975== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24975== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==24975== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24975== by 0x4B7C822: ??? +==24975== by 0x4B7C96F: ??? +==24975== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24975== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24975== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24975== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24975== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24975== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24975== by 0x5308D38: PetscInitialize (pinit.c:924) +==24975== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24975== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24975== by 0x13ABB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24975== by 0x13250D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24975== by 0x13549A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24975== by 0x13533A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24975== by 0x1359D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24975== by 0x12FAD5: main (TestAbstractIvpOdeSolver.cpp:19) +==24975== +==24975== Open file descriptor 158: +==24975== +==24975== +==24975== Open file descriptor 155: +==24975== +==24975== +==24975== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractIvpOdeSolver_valgrind.txt +==24975== +==24975== +==24975== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24975== +==24975== +==24975== +==24975== HEAP SUMMARY: +==24975== in use at exit: 617,938 bytes in 8,238 blocks +==24975== total heap usage: 138,424 allocs, 130,186 frees, 1,346,069,926 bytes allocated +==24975== +==24975== LEAK SUMMARY: +==24975== definitely lost: 0 bytes in 0 blocks +==24975== indirectly lost: 0 bytes in 0 blocks +==24975== possibly lost: 0 bytes in 0 blocks +==24975== still reachable: 24 bytes in 2 blocks +==24975== suppressed: 617,914 bytes in 8,236 blocks +==24975== Reachable blocks (those to which a pointer was found) are not shown. +==24975== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24975== +==24975== For lists of detected and suppressed errors, rerun with: -s +==24975== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractOdeSystem_valgrind.txt new file mode 100644 index 000000000..27c16a49c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24991== Memcheck, a memory error detector +==24991== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24991== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24991== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractOdeSystem -malloc_debug -malloc_dump -memory_info +==24991== Parent PID: 24057 +==24991== +==24991== +==24991== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24991== Open file descriptor 12: +==24991== at 0x640707D: pipe (pipe.c:29) +==24991== by 0xB1E407D: ??? +==24991== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24991== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24991== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24991== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24991== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24991== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24991== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24991== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24991== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24991== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24991== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24991== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24991== +==24991== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24991== at 0x640BA1C: __open_nocancel (open64_nocancel.c:39) +==24991== by 0x638FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24991== by 0x4B7C822: ??? +==24991== by 0x4B7C96F: ??? +==24991== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24991== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24991== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24991== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24991== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24991== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24991== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==24991== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24991== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24991== by 0x137AEF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24991== by 0x1315E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24991== by 0x134746: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24991== by 0x1345E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24991== by 0x134C7D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24991== by 0x12EE55: main (TestAbstractOdeSystem.cpp:19) +==24991== +==24991== Open file descriptor 158: +==24991== +==24991== +==24991== Open file descriptor 155: +==24991== +==24991== +==24991== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractOdeSystem_valgrind.txt +==24991== +==24991== +==24991== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24991== +==24991== +==24991== +==24991== HEAP SUMMARY: +==24991== in use at exit: 617,938 bytes in 8,238 blocks +==24991== total heap usage: 45,969 allocs, 37,731 frees, 1,338,334,260 bytes allocated +==24991== +==24991== LEAK SUMMARY: +==24991== definitely lost: 0 bytes in 0 blocks +==24991== indirectly lost: 0 bytes in 0 blocks +==24991== possibly lost: 0 bytes in 0 blocks +==24991== still reachable: 24 bytes in 2 blocks +==24991== suppressed: 617,914 bytes in 8,236 blocks +==24991== Reachable blocks (those to which a pointer was found) are not shown. +==24991== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24991== +==24991== For lists of detected and suppressed errors, rerun with: -s +==24991== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestAbstractPurkinjeCellFactory_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAbstractPurkinjeCellFactory_valgrind.txt new file mode 100644 index 000000000..fe96b6868 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAbstractPurkinjeCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==44017== Memcheck, a memory error detector +==44017== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44017== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44017== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestAbstractPurkinjeCellFactory -malloc_debug -malloc_dump -memory_info +==44017== Parent PID: 24057 +==44017== +==44017== +==44017== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44017== Open file descriptor 12: +==44017== at 0xA51707D: pipe (pipe.c:29) +==44017== by 0x1432F07D: ??? +==44017== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44017== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44017== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44017== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==44017== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44017== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44017== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44017== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44017== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44017== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44017== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44017== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==44017== +==44017== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44017== at 0xA51BA1C: __open_nocancel (open64_nocancel.c:39) +==44017== by 0xA49FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44017== by 0x9E40822: ??? +==44017== by 0x9E4096F: ??? +==44017== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44017== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44017== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44017== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44017== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44017== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44017== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==44017== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44017== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44017== by 0x11B060: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44017== by 0x11664D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44017== by 0x118D6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44017== by 0x118C0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44017== by 0x1192A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44017== by 0x114A75: main (TestAbstractPurkinjeCellFactory.cpp:19) +==44017== +==44017== Open file descriptor 158: +==44017== +==44017== +==44017== Open file descriptor 155: +==44017== +==44017== +==44017== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractPurkinjeCellFactory_valgrind.txt +==44017== +==44017== +==44017== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44017== +==44017== +==44017== +==44017== HEAP SUMMARY: +==44017== in use at exit: 618,354 bytes in 8,238 blocks +==44017== total heap usage: 60,034 allocs, 51,796 frees, 1,339,348,525 bytes allocated +==44017== +==44017== LEAK SUMMARY: +==44017== definitely lost: 0 bytes in 0 blocks +==44017== indirectly lost: 0 bytes in 0 blocks +==44017== possibly lost: 0 bytes in 0 blocks +==44017== still reachable: 24 bytes in 2 blocks +==44017== suppressed: 618,330 bytes in 8,236 blocks +==44017== Reachable blocks (those to which a pointer was found) are not shown. +==44017== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44017== +==44017== For lists of detected and suppressed errors, rerun with: -s +==44017== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAcinarUnitModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAcinarUnitModels_valgrind.txt new file mode 100644 index 000000000..c92180629 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAcinarUnitModels_valgrind.txt @@ -0,0 +1,36 @@ +==41401== Memcheck, a memory error detector +==41401== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41401== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41401== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAcinarUnitModels -malloc_debug -malloc_dump -memory_info +==41401== Parent PID: 24057 +==41401== +==41401== +==41401== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41401== Open file descriptor 158: +==41401== +==41401== +==41401== Open file descriptor 155: +==41401== +==41401== +==41401== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAcinarUnitModels_valgrind.txt +==41401== +==41401== +==41401== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41401== +==41401== +==41401== +==41401== HEAP SUMMARY: +==41401== in use at exit: 24 bytes in 2 blocks +==41401== total heap usage: 56,753 allocs, 56,751 frees, 1,351,578 bytes allocated +==41401== +==41401== LEAK SUMMARY: +==41401== definitely lost: 0 bytes in 0 blocks +==41401== indirectly lost: 0 bytes in 0 blocks +==41401== possibly lost: 0 bytes in 0 blocks +==41401== still reachable: 24 bytes in 2 blocks +==41401== suppressed: 0 bytes in 0 blocks +==41401== Reachable blocks (those to which a pointer was found) are not shown. +==41401== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41401== +==41401== For lists of detected and suppressed errors, rerun with: -s +==41401== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayBranch_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayBranch_valgrind.txt new file mode 100644 index 000000000..96f44d9b0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayBranch_valgrind.txt @@ -0,0 +1,36 @@ +==41314== Memcheck, a memory error detector +==41314== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41314== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41314== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayBranch -malloc_debug -malloc_dump -memory_info +==41314== Parent PID: 24057 +==41314== +==41314== +==41314== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41314== Open file descriptor 158: +==41314== +==41314== +==41314== Open file descriptor 155: +==41314== +==41314== +==41314== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayBranch_valgrind.txt +==41314== +==41314== +==41314== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41314== +==41314== +==41314== +==41314== HEAP SUMMARY: +==41314== in use at exit: 24 bytes in 2 blocks +==41314== total heap usage: 7,276 allocs, 7,274 frees, 1,027,089 bytes allocated +==41314== +==41314== LEAK SUMMARY: +==41314== definitely lost: 0 bytes in 0 blocks +==41314== indirectly lost: 0 bytes in 0 blocks +==41314== possibly lost: 0 bytes in 0 blocks +==41314== still reachable: 24 bytes in 2 blocks +==41314== suppressed: 0 bytes in 0 blocks +==41314== Reachable blocks (those to which a pointer was found) are not shown. +==41314== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41314== +==41314== For lists of detected and suppressed errors, rerun with: -s +==41314== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayGeneration_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayGeneration_valgrind.txt new file mode 100644 index 000000000..29744f3b0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayGeneration_valgrind.txt @@ -0,0 +1,36 @@ +==41357== Memcheck, a memory error detector +==41357== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41357== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41357== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGeneration -malloc_debug -malloc_dump -memory_info +==41357== Parent PID: 24057 +==41357== +==41357== +==41357== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41357== Open file descriptor 158: +==41357== +==41357== +==41357== Open file descriptor 155: +==41357== +==41357== +==41357== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGeneration_valgrind.txt +==41357== +==41357== +==41357== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41357== +==41357== +==41357== +==41357== HEAP SUMMARY: +==41357== in use at exit: 24 bytes in 2 blocks +==41357== total heap usage: 7,378 allocs, 7,376 frees, 939,196 bytes allocated +==41357== +==41357== LEAK SUMMARY: +==41357== definitely lost: 0 bytes in 0 blocks +==41357== indirectly lost: 0 bytes in 0 blocks +==41357== possibly lost: 0 bytes in 0 blocks +==41357== still reachable: 24 bytes in 2 blocks +==41357== suppressed: 0 bytes in 0 blocks +==41357== Reachable blocks (those to which a pointer was found) are not shown. +==41357== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41357== +==41357== For lists of detected and suppressed errors, rerun with: -s +==41357== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..e729d2ebd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41359== Memcheck, a memory error detector +==41359== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41359== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41359== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41359== Parent PID: 24057 +==41359== +==41359== +==41359== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41359== Open file descriptor 12: +==41359== at 0x6BD107D: pipe (pipe.c:29) +==41359== by 0x107AC07D: ??? +==41359== by 0xBAD14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41359== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41359== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41359== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41359== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41359== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41359== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41359== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41359== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41359== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41359== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41359== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41359== +==41359== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41359== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) +==41359== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41359== by 0x5DD8822: ??? +==41359== by 0x5DD896F: ??? +==41359== by 0xBB766DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41359== by 0xBB76938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41359== by 0xBB2C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41359== by 0xBAD12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41359== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41359== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41359== by 0x4B43D38: PetscInitialize (pinit.c:924) +==41359== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41359== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41359== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41359== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41359== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41359== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41359== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41359== by 0x111D35: main (TestAirwayGenerator.cpp:19) +==41359== +==41359== Open file descriptor 158: +==41359== +==41359== +==41359== Open file descriptor 155: +==41359== +==41359== +==41359== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt +==41359== +==41359== +==41359== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41359== +==41359== +==41359== +==41359== HEAP SUMMARY: +==41359== in use at exit: 618,338 bytes in 8,238 blocks +==41359== total heap usage: 627,252 allocs, 619,014 frees, 1,787,062,530 bytes allocated +==41359== +==41359== LEAK SUMMARY: +==41359== definitely lost: 0 bytes in 0 blocks +==41359== indirectly lost: 0 bytes in 0 blocks +==41359== possibly lost: 0 bytes in 0 blocks +==41359== still reachable: 24 bytes in 2 blocks +==41359== suppressed: 618,314 bytes in 8,236 blocks +==41359== Reachable blocks (those to which a pointer was found) are not shown. +==41359== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41359== +==41359== For lists of detected and suppressed errors, rerun with: -s +==41359== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayPropertiesCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..c53b43a5c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41317== Memcheck, a memory error detector +==41317== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41317== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41317== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41317== Parent PID: 24057 +==41317== +==41317== +==41317== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41317== Open file descriptor 158: +==41317== +==41317== +==41317== Open file descriptor 155: +==41317== +==41317== +==41317== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayPropertiesCalculator_valgrind.txt +==41317== +==41317== +==41317== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41317== +==41317== +==41317== +==41317== HEAP SUMMARY: +==41317== in use at exit: 24 bytes in 2 blocks +==41317== total heap usage: 6,941,070 allocs, 6,941,068 frees, 279,826,164 bytes allocated +==41317== +==41317== LEAK SUMMARY: +==41317== definitely lost: 0 bytes in 0 blocks +==41317== indirectly lost: 0 bytes in 0 blocks +==41317== possibly lost: 0 bytes in 0 blocks +==41317== still reachable: 24 bytes in 2 blocks +==41317== suppressed: 0 bytes in 0 blocks +==41317== Reachable blocks (those to which a pointer was found) are not shown. +==41317== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41317== +==41317== For lists of detected and suppressed errors, rerun with: -s +==41317== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayRemesher_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayRemesher_valgrind.txt new file mode 100644 index 000000000..bad874c7b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayRemesher_valgrind.txt @@ -0,0 +1,73 @@ +==41377== Memcheck, a memory error detector +==41377== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41377== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41377== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayRemesher -malloc_debug -malloc_dump -memory_info +==41377== Parent PID: 24057 +==41377== +==41377== +==41377== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41377== Open file descriptor 12: +==41377== at 0x823107D: pipe (pipe.c:29) +==41377== by 0x107AC07D: ??? +==41377== by 0xBFD34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41377== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41377== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41377== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41377== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41377== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41377== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41377== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41377== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41377== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41377== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41377== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41377== +==41377== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41377== at 0x8235A1C: __open_nocancel (open64_nocancel.c:39) +==41377== by 0x81B9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41377== by 0x7A3B822: ??? +==41377== by 0x7A3B96F: ??? +==41377== by 0xC0786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41377== by 0xC078938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41377== by 0xC02E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41377== by 0xBFD32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41377== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41377== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41377== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41377== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41377== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41377== by 0x11A567: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41377== by 0x116153: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41377== by 0x1185EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41377== by 0x1184E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41377== by 0x118AFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41377== by 0x114955: main (TestAirwayRemesher.cpp:18) +==41377== +==41377== Open file descriptor 158: +==41377== +==41377== +==41377== Open file descriptor 155: +==41377== +==41377== +==41377== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayRemesher_valgrind.txt +==41377== +==41377== +==41377== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41377== +==41377== +==41377== +==41377== HEAP SUMMARY: +==41377== in use at exit: 618,265 bytes in 8,234 blocks +==41377== total heap usage: 11,597,069 allocs, 11,588,835 frees, 1,797,525,108 bytes allocated +==41377== +==41377== LEAK SUMMARY: +==41377== definitely lost: 0 bytes in 0 blocks +==41377== indirectly lost: 0 bytes in 0 blocks +==41377== possibly lost: 0 bytes in 0 blocks +==41377== still reachable: 24 bytes in 2 blocks +==41377== suppressed: 618,241 bytes in 8,232 blocks +==41377== Reachable blocks (those to which a pointer was found) are not shown. +==41377== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41377== +==41377== For lists of detected and suppressed errors, rerun with: -s +==41377== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayTreeWalker_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayTreeWalker_valgrind.txt new file mode 100644 index 000000000..4abe8cfcd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayTreeWalker_valgrind.txt @@ -0,0 +1,36 @@ +==41319== Memcheck, a memory error detector +==41319== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41319== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41319== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayTreeWalker -malloc_debug -malloc_dump -memory_info +==41319== Parent PID: 24057 +==41319== +==41319== +==41319== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41319== Open file descriptor 158: +==41319== +==41319== +==41319== Open file descriptor 155: +==41319== +==41319== +==41319== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayTreeWalker_valgrind.txt +==41319== +==41319== +==41319== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41319== +==41319== +==41319== +==41319== HEAP SUMMARY: +==41319== in use at exit: 24 bytes in 2 blocks +==41319== total heap usage: 7,161 allocs, 7,159 frees, 1,017,868 bytes allocated +==41319== +==41319== LEAK SUMMARY: +==41319== definitely lost: 0 bytes in 0 blocks +==41319== indirectly lost: 0 bytes in 0 blocks +==41319== possibly lost: 0 bytes in 0 blocks +==41319== still reachable: 24 bytes in 2 blocks +==41319== suppressed: 0 bytes in 0 blocks +==41319== Reachable blocks (those to which a pointer was found) are not shown. +==41319== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41319== +==41319== For lists of detected and suppressed errors, rerun with: -s +==41319== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestAirwayWallModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAirwayWallModels_valgrind.txt new file mode 100644 index 000000000..fbbef0488 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAirwayWallModels_valgrind.txt @@ -0,0 +1,36 @@ +==41404== Memcheck, a memory error detector +==41404== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41404== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41404== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayWallModels -malloc_debug -malloc_dump -memory_info +==41404== Parent PID: 24057 +==41404== +==41404== +==41404== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41404== Open file descriptor 158: +==41404== +==41404== +==41404== Open file descriptor 155: +==41404== +==41404== +==41404== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayWallModels_valgrind.txt +==41404== +==41404== +==41404== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41404== +==41404== +==41404== +==41404== HEAP SUMMARY: +==41404== in use at exit: 24 bytes in 2 blocks +==41404== total heap usage: 7,221 allocs, 7,219 frees, 1,020,285 bytes allocated +==41404== +==41404== LEAK SUMMARY: +==41404== definitely lost: 0 bytes in 0 blocks +==41404== indirectly lost: 0 bytes in 0 blocks +==41404== possibly lost: 0 bytes in 0 blocks +==41404== still reachable: 24 bytes in 2 blocks +==41404== suppressed: 0 bytes in 0 blocks +==41404== Reachable blocks (those to which a pointer was found) are not shown. +==41404== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41404== +==41404== For lists of detected and suppressed errors, rerun with: -s +==41404== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..bfe9f4b5b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25976== Memcheck, a memory error detector +==25976== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25976== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25976== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==25976== Parent PID: 24057 +==25976== +==25976== +==25976== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25976== Open file descriptor 12: +==25976== at 0xEF9407D: pipe (pipe.c:29) +==25976== by 0x196B507D: ??? +==25976== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25976== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25976== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25976== by 0xD871D38: PetscInitialize (pinit.c:924) +==25976== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25976== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25976== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25976== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25976== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25976== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25976== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25976== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25976== +==25976== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25976== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25976== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25976== by 0xD723822: ??? +==25976== by 0xD72396F: ??? +==25976== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25976== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25976== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25976== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25976== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25976== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25976== by 0xD871D38: PetscInitialize (pinit.c:924) +==25976== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25976== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25976== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25976== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25976== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25976== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25976== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25976== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) +==25976== +==25976== Open file descriptor 158: +==25976== +==25976== +==25976== Open file descriptor 155: +==25976== +==25976== +==25976== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt +==25976== +==25976== +==25976== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25976== +==25976== +==25976== +==25976== HEAP SUMMARY: +==25976== in use at exit: 618,338 bytes in 8,238 blocks +==25976== total heap usage: 166,109 allocs, 157,871 frees, 1,349,641,175 bytes allocated +==25976== +==25976== LEAK SUMMARY: +==25976== definitely lost: 0 bytes in 0 blocks +==25976== indirectly lost: 0 bytes in 0 blocks +==25976== possibly lost: 0 bytes in 0 blocks +==25976== still reachable: 24 bytes in 2 blocks +==25976== suppressed: 618,314 bytes in 8,236 blocks +==25976== Reachable blocks (those to which a pointer was found) are not shown. +==25976== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25976== +==25976== For lists of detected and suppressed errors, rerun with: -s +==25976== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestArchiveCell_valgrind.txt b/log-files/2025-02-12_21-17-58/TestArchiveCell_valgrind.txt new file mode 100644 index 000000000..645543163 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestArchiveCell_valgrind.txt @@ -0,0 +1,73 @@ +==25427== Memcheck, a memory error detector +==25427== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25427== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25427== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info +==25427== Parent PID: 24057 +==25427== +==25427== +==25427== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25427== Open file descriptor 12: +==25427== at 0xED5007D: pipe (pipe.c:29) +==25427== by 0x196B507D: ??? +==25427== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25427== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25427== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25427== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25427== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25427== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25427== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25427== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25427== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25427== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25427== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25427== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25427== +==25427== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25427== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25427== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25427== by 0xD4DF822: ??? +==25427== by 0xD4DF96F: ??? +==25427== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25427== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25427== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25427== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25427== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25427== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25427== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25427== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25427== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25427== by 0x1A4DB1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25427== by 0x19F1FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25427== by 0x1A2140: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25427== by 0x1A203C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25427== by 0x1A264F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25427== by 0x19D9F5: main (TestArchiveCell.cpp:18) +==25427== +==25427== Open file descriptor 158: +==25427== +==25427== +==25427== Open file descriptor 155: +==25427== +==25427== +==25427== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveCell_valgrind.txt +==25427== +==25427== +==25427== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25427== +==25427== +==25427== +==25427== HEAP SUMMARY: +==25427== in use at exit: 618,434 bytes in 8,240 blocks +==25427== total heap usage: 53,934 allocs, 45,694 frees, 1,339,009,613 bytes allocated +==25427== +==25427== LEAK SUMMARY: +==25427== definitely lost: 0 bytes in 0 blocks +==25427== indirectly lost: 0 bytes in 0 blocks +==25427== possibly lost: 0 bytes in 0 blocks +==25427== still reachable: 120 bytes in 4 blocks +==25427== suppressed: 618,314 bytes in 8,236 blocks +==25427== Reachable blocks (those to which a pointer was found) are not shown. +==25427== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25427== +==25427== For lists of detected and suppressed errors, rerun with: -s +==25427== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestArchiveFormat_valgrind.txt b/log-files/2025-02-12_21-17-58/TestArchiveFormat_valgrind.txt new file mode 100644 index 000000000..f6a2d8f4e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestArchiveFormat_valgrind.txt @@ -0,0 +1,73 @@ +==40681== Memcheck, a memory error detector +==40681== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40681== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40681== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestArchiveFormat -malloc_debug -malloc_dump -memory_info +==40681== Parent PID: 24057 +==40681== +==40681== +==40681== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40681== Open file descriptor 12: +==40681== at 0x125BA07D: pipe (pipe.c:29) +==40681== by 0x1B37607D: ??? +==40681== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40681== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40681== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40681== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40681== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40681== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40681== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40681== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40681== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40681== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40681== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40681== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40681== +==40681== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40681== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40681== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40681== by 0x10A04822: ??? +==40681== by 0x10A0496F: ??? +==40681== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40681== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40681== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40681== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40681== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40681== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40681== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40681== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40681== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40681== by 0x1C0D5D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40681== by 0x1BBA9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40681== by 0x1BE6BA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40681== by 0x1BE5B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40681== by 0x1BEBC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40681== by 0x1BA295: main (TestArchiveFormat.cpp:18) +==40681== +==40681== Open file descriptor 158: +==40681== +==40681== +==40681== Open file descriptor 155: +==40681== +==40681== +==40681== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiveFormat_valgrind.txt +==40681== +==40681== +==40681== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40681== +==40681== +==40681== +==40681== HEAP SUMMARY: +==40681== in use at exit: 618,434 bytes in 8,239 blocks +==40681== total heap usage: 137,668 allocs, 129,429 frees, 1,345,403,840 bytes allocated +==40681== +==40681== LEAK SUMMARY: +==40681== definitely lost: 0 bytes in 0 blocks +==40681== indirectly lost: 0 bytes in 0 blocks +==40681== possibly lost: 0 bytes in 0 blocks +==40681== still reachable: 104 bytes in 3 blocks +==40681== suppressed: 618,330 bytes in 8,236 blocks +==40681== Reachable blocks (those to which a pointer was found) are not shown. +==40681== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40681== +==40681== For lists of detected and suppressed errors, rerun with: -s +==40681== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestArchivingExtendedBidomain_valgrind.txt b/log-files/2025-02-12_21-17-58/TestArchivingExtendedBidomain_valgrind.txt new file mode 100644 index 000000000..0764ffab3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestArchivingExtendedBidomain_valgrind.txt @@ -0,0 +1,73 @@ +==41513== Memcheck, a memory error detector +==41513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestArchivingExtendedBidomain -malloc_debug -malloc_dump -memory_info +==41513== Parent PID: 24057 +==41513== +==41513== +==41513== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41513== Open file descriptor 12: +==41513== at 0xBD5407D: pipe (pipe.c:29) +==41513== by 0x1432F07D: ??? +==41513== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41513== by 0xB644418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41513== by 0xB5DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41513== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==41513== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41513== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41513== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41513== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41513== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41513== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41513== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41513== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41513== +==41513== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41513== at 0xBD58A1C: __open_nocancel (open64_nocancel.c:39) +==41513== by 0xBCDCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41513== by 0xA184822: ??? +==41513== by 0xA18496F: ??? +==41513== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41513== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41513== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41513== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41513== by 0xB644418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41513== by 0xB5DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41513== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==41513== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41513== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41513== by 0x12EE9E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41513== by 0x129BF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41513== by 0x12CABA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41513== by 0x12C9B5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41513== by 0x12CFC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41513== by 0x1283A5: main (TestArchivingExtendedBidomain.cpp:18) +==41513== +==41513== Open file descriptor 158: +==41513== +==41513== +==41513== Open file descriptor 155: +==41513== +==41513== +==41513== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingExtendedBidomain_valgrind.txt +==41513== +==41513== +==41513== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41513== +==41513== +==41513== +==41513== HEAP SUMMARY: +==41513== in use at exit: 618,761 bytes in 8,244 blocks +==41513== total heap usage: 352,178 allocs, 343,934 frees, 1,440,038,598 bytes allocated +==41513== +==41513== LEAK SUMMARY: +==41513== definitely lost: 0 bytes in 0 blocks +==41513== indirectly lost: 0 bytes in 0 blocks +==41513== possibly lost: 0 bytes in 0 blocks +==41513== still reachable: 24 bytes in 2 blocks +==41513== suppressed: 618,737 bytes in 8,242 blocks +==41513== Reachable blocks (those to which a pointer was found) are not shown. +==41513== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41513== +==41513== For lists of detected and suppressed errors, rerun with: -s +==41513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestArchivingHelperClasses_valgrind.txt b/log-files/2025-02-12_21-17-58/TestArchivingHelperClasses_valgrind.txt new file mode 100644 index 000000000..483ee9f0a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestArchivingHelperClasses_valgrind.txt @@ -0,0 +1,73 @@ +==24058== Memcheck, a memory error detector +==24058== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24058== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24058== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchivingHelperClasses -malloc_debug -malloc_dump -memory_info +==24058== Parent PID: 24057 +==24058== +==24058== +==24058== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24058== Open file descriptor 12: +==24058== at 0x4CF607D: pipe (pipe.c:29) +==24058== by 0xAEA507D: ??? +==24058== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24058== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24058== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24058== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24058== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24058== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24058== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24058== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24058== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24058== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==24058== +==24058== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24058== at 0x4CFAA1C: __open_nocancel (open64_nocancel.c:39) +==24058== by 0x4C7EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24058== by 0x493A822: ??? +==24058== by 0x493A96F: ??? +==24058== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24058== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24058== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24058== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24058== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24058== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24058== by 0x11F878: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24058== by 0x11ABDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24058== by 0x11D596: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24058== by 0x11D436: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24058== by 0x11DACD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24058== by 0x119005: main (TestArchivingHelperClasses.cpp:19) +==24058== +==24058== Open file descriptor 158: +==24058== +==24058== +==24058== Open file descriptor 155: +==24058== +==24058== +==24058== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchivingHelperClasses_valgrind.txt +==24058== +==24058== +==24058== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24058== +==24058== +==24058== +==24058== HEAP SUMMARY: +==24058== in use at exit: 617,874 bytes in 8,238 blocks +==24058== total heap usage: 45,942 allocs, 37,704 frees, 1,338,455,809 bytes allocated +==24058== +==24058== LEAK SUMMARY: +==24058== definitely lost: 0 bytes in 0 blocks +==24058== indirectly lost: 0 bytes in 0 blocks +==24058== possibly lost: 0 bytes in 0 blocks +==24058== still reachable: 24 bytes in 2 blocks +==24058== suppressed: 617,850 bytes in 8,236 blocks +==24058== Reachable blocks (those to which a pointer was found) are not shown. +==24058== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24058== +==24058== For lists of detected and suppressed errors, rerun with: -s +==24058== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestArchiving_valgrind.txt b/log-files/2025-02-12_21-17-58/TestArchiving_valgrind.txt new file mode 100644 index 000000000..be4b0ba00 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestArchiving_valgrind.txt @@ -0,0 +1,73 @@ +==24059== Memcheck, a memory error detector +==24059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24059== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestArchiving -malloc_debug -malloc_dump -memory_info +==24059== Parent PID: 24057 +==24059== +==24059== +==24059== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24059== Open file descriptor 12: +==24059== at 0x61AB07D: pipe (pipe.c:29) +==24059== by 0xAEA507D: ??? +==24059== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24059== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24059== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24059== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24059== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24059== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24059== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24059== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24059== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24059== by 0x127655: main (TestArchiving.cpp:18) +==24059== +==24059== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24059== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24059== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24059== by 0x493A822: ??? +==24059== by 0x493A96F: ??? +==24059== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24059== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24059== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24059== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24059== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24059== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24059== by 0x12FB25: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24059== by 0x128E5F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24059== by 0x12CB36: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24059== by 0x12CA31: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24059== by 0x12D045: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24059== by 0x127655: main (TestArchiving.cpp:18) +==24059== +==24059== Open file descriptor 158: +==24059== +==24059== +==24059== Open file descriptor 155: +==24059== +==24059== +==24059== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestArchiving_valgrind.txt +==24059== +==24059== +==24059== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24059== +==24059== +==24059== +==24059== HEAP SUMMARY: +==24059== in use at exit: 617,874 bytes in 8,238 blocks +==24059== total heap usage: 45,497 allocs, 37,259 frees, 1,338,342,999 bytes allocated +==24059== +==24059== LEAK SUMMARY: +==24059== definitely lost: 0 bytes in 0 blocks +==24059== indirectly lost: 0 bytes in 0 blocks +==24059== possibly lost: 0 bytes in 0 blocks +==24059== still reachable: 24 bytes in 2 blocks +==24059== suppressed: 617,850 bytes in 8,236 blocks +==24059== Reachable blocks (those to which a pointer was found) are not shown. +==24059== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24059== +==24059== For lists of detected and suppressed errors, rerun with: -s +==24059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestBackwardEulerIvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBackwardEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..b9e044e27 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBackwardEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25015== Memcheck, a memory error detector +==25015== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25015== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25015== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestBackwardEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25015== Parent PID: 24057 +==25015== +==25015== +==25015== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25015== Open file descriptor 12: +==25015== at 0x503907D: pipe (pipe.c:29) +==25015== by 0xB1E607D: ??? +==25015== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25015== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25015== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25015== by 0x5308D38: PetscInitialize (pinit.c:924) +==25015== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25015== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25015== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25015== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25015== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25015== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25015== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25015== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==25015== +==25015== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25015== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25015== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25015== by 0x4B7C822: ??? +==25015== by 0x4B7C96F: ??? +==25015== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25015== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25015== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25015== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25015== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25015== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25015== by 0x5308D38: PetscInitialize (pinit.c:924) +==25015== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25015== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25015== by 0x125F28: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25015== by 0x120619: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25015== by 0x122DCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25015== by 0x122CCA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25015== by 0x1232DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25015== by 0x11DEE5: main (TestBackwardEulerIvpOdeSolver.cpp:18) +==25015== +==25015== Open file descriptor 158: +==25015== +==25015== +==25015== Open file descriptor 155: +==25015== +==25015== +==25015== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBackwardEulerIvpOdeSolver_valgrind.txt +==25015== +==25015== +==25015== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25015== +==25015== +==25015== +==25015== HEAP SUMMARY: +==25015== in use at exit: 617,938 bytes in 8,238 blocks +==25015== total heap usage: 386,054 allocs, 377,816 frees, 1,344,036,994 bytes allocated +==25015== +==25015== LEAK SUMMARY: +==25015== definitely lost: 0 bytes in 0 blocks +==25015== indirectly lost: 0 bytes in 0 blocks +==25015== possibly lost: 0 bytes in 0 blocks +==25015== still reachable: 24 bytes in 2 blocks +==25015== suppressed: 617,914 bytes in 8,236 blocks +==25015== Reachable blocks (those to which a pointer was found) are not shown. +==25015== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25015== +==25015== For lists of detected and suppressed errors, rerun with: -s +==25015== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt new file mode 100644 index 000000000..7d78e6a29 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt @@ -0,0 +1,73 @@ +==41459== Memcheck, a memory error detector +==41459== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41459== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41459== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBenchmarkPreconditionersForMeshIndependence -malloc_debug -malloc_dump -memory_info +==41459== Parent PID: 24057 +==41459== +==41459== +==41459== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41459== Open file descriptor 12: +==41459== at 0xBCF707D: pipe (pipe.c:29) +==41459== by 0x1432F07D: ??? +==41459== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41459== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41459== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41459== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41459== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41459== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41459== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41459== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41459== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41459== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41459== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41459== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41459== +==41459== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41459== at 0xBCFBA1C: __open_nocancel (open64_nocancel.c:39) +==41459== by 0xBC7FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41459== by 0xB400822: ??? +==41459== by 0xB40096F: ??? +==41459== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41459== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41459== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41459== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41459== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41459== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41459== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41459== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41459== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41459== by 0x11D9C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41459== by 0x1189AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41459== by 0x11B52E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41459== by 0x11B3CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41459== by 0x11BA65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41459== by 0x116DD5: main (TestBenchmarkPreconditionersForMeshIndependence.cpp:19) +==41459== +==41459== Open file descriptor 158: +==41459== +==41459== +==41459== Open file descriptor 155: +==41459== +==41459== +==41459== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBenchmarkPreconditionersForMeshIndependence_valgrind.txt +==41459== +==41459== +==41459== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41459== +==41459== +==41459== +==41459== HEAP SUMMARY: +==41459== in use at exit: 618,777 bytes in 8,245 blocks +==41459== total heap usage: 466,124 allocs, 457,879 frees, 1,542,132,287 bytes allocated +==41459== +==41459== LEAK SUMMARY: +==41459== definitely lost: 0 bytes in 0 blocks +==41459== indirectly lost: 0 bytes in 0 blocks +==41459== possibly lost: 0 bytes in 0 blocks +==41459== still reachable: 40 bytes in 3 blocks +==41459== suppressed: 618,737 bytes in 8,242 blocks +==41459== Reachable blocks (those to which a pointer was found) are not shown. +==41459== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41459== +==41459== For lists of detected and suppressed errors, rerun with: -s +==41459== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestBidomainDistributedMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBidomainDistributedMesh_valgrind.txt new file mode 100644 index 000000000..37080c8d7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBidomainDistributedMesh_valgrind.txt @@ -0,0 +1,73 @@ +==41471== Memcheck, a memory error detector +==41471== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41471== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41471== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainDistributedMesh -malloc_debug -malloc_dump -memory_info +==41471== Parent PID: 24057 +==41471== +==41471== +==41471== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41471== Open file descriptor 12: +==41471== at 0xBC1007D: pipe (pipe.c:29) +==41471== by 0x1432F07D: ??? +==41471== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41471== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41471== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41471== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41471== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41471== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41471== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41471== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41471== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41471== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41471== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41471== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41471== +==41471== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41471== at 0xBC14A1C: __open_nocancel (open64_nocancel.c:39) +==41471== by 0xBB98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41471== by 0xB400822: ??? +==41471== by 0xB40096F: ??? +==41471== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41471== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41471== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41471== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41471== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41471== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41471== by 0xA16BD38: PetscInitialize (pinit.c:924) +==41471== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41471== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41471== by 0x12A9B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41471== by 0x125733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41471== by 0x127D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41471== by 0x127C52: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41471== by 0x128265: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41471== by 0x123F35: main (TestBidomainDistributedMesh.cpp:18) +==41471== +==41471== Open file descriptor 158: +==41471== +==41471== +==41471== Open file descriptor 155: +==41471== +==41471== +==41471== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainDistributedMesh_valgrind.txt +==41471== +==41471== +==41471== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41471== +==41471== +==41471== +==41471== HEAP SUMMARY: +==41471== in use at exit: 618,834 bytes in 8,248 blocks +==41471== total heap usage: 428,253 allocs, 420,005 frees, 1,437,394,701 bytes allocated +==41471== +==41471== LEAK SUMMARY: +==41471== definitely lost: 0 bytes in 0 blocks +==41471== indirectly lost: 0 bytes in 0 blocks +==41471== possibly lost: 0 bytes in 0 blocks +==41471== still reachable: 24 bytes in 2 blocks +==41471== suppressed: 618,810 bytes in 8,246 blocks +==41471== Reachable blocks (those to which a pointer was found) are not shown. +==41471== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41471== +==41471== For lists of detected and suppressed errors, rerun with: -s +==41471== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 55 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestBidomainProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBidomainProblem_valgrind.txt new file mode 100644 index 000000000..8b6a1b08b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41482== Memcheck, a memory error detector +==41482== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41482== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41482== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info +==41482== Parent PID: 24057 +==41482== +==41482== +==41482== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41482== Open file descriptor 12: +==41482== at 0xC0F307D: pipe (pipe.c:29) +==41482== by 0x1432F07D: ??? +==41482== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41482== by 0xB9E1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41482== by 0xB97AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41482== by 0xA671D38: PetscInitialize (pinit.c:924) +==41482== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41482== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41482== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41482== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41482== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41482== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41482== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41482== by 0x138285: main (TestBidomainProblem.cpp:19) +==41482== +==41482== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41482== at 0xC0F7A1C: __open_nocancel (open64_nocancel.c:39) +==41482== by 0xC07BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41482== by 0xA521822: ??? +==41482== by 0xA52196F: ??? +==41482== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41482== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41482== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41482== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41482== by 0xB9E1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41482== by 0xB97AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41482== by 0xA671D38: PetscInitialize (pinit.c:924) +==41482== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41482== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41482== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41482== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41482== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41482== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41482== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41482== by 0x138285: main (TestBidomainProblem.cpp:19) +==41482== +==41482== Open file descriptor 158: +==41482== +==41482== +==41482== Open file descriptor 155: +==41482== +==41482== +==41482== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt +==41482== +==41482== +==41482== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41482== +==41482== +==41482== +==41482== HEAP SUMMARY: +==41482== in use at exit: 618,834 bytes in 8,248 blocks +==41482== total heap usage: 584,918 allocs, 576,670 frees, 1,548,984,100 bytes allocated +==41482== +==41482== LEAK SUMMARY: +==41482== definitely lost: 0 bytes in 0 blocks +==41482== indirectly lost: 0 bytes in 0 blocks +==41482== possibly lost: 0 bytes in 0 blocks +==41482== still reachable: 24 bytes in 2 blocks +==41482== suppressed: 618,810 bytes in 8,246 blocks +==41482== Reachable blocks (those to which a pointer was found) are not shown. +==41482== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41482== +==41482== For lists of detected and suppressed errors, rerun with: -s +==41482== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestBidomainTissue_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBidomainTissue_valgrind.txt new file mode 100644 index 000000000..04d1fec49 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41481== Memcheck, a memory error detector +==41481== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41481== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41481== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainTissue -malloc_debug -malloc_dump -memory_info +==41481== Parent PID: 24057 +==41481== +==41481== +==41481== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41481== Open file descriptor 12: +==41481== at 0xBBAA07D: pipe (pipe.c:29) +==41481== by 0x1432F07D: ??? +==41481== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41481== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41481== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41481== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41481== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41481== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41481== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41481== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41481== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41481== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41481== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41481== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41481== +==41481== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41481== at 0xBBAEA1C: __open_nocancel (open64_nocancel.c:39) +==41481== by 0xBB32BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41481== by 0xA111822: ??? +==41481== by 0xA11196F: ??? +==41481== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41481== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41481== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41481== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41481== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41481== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41481== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41481== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41481== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41481== by 0x1397A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41481== by 0x133EC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41481== by 0x136612: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41481== by 0x13650E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41481== by 0x136B21: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41481== by 0x1326C5: main (TestBidomainTissue.cpp:18) +==41481== +==41481== Open file descriptor 158: +==41481== +==41481== +==41481== Open file descriptor 155: +==41481== +==41481== +==41481== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainTissue_valgrind.txt +==41481== +==41481== +==41481== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41481== +==41481== +==41481== +==41481== HEAP SUMMARY: +==41481== in use at exit: 618,354 bytes in 8,238 blocks +==41481== total heap usage: 192,059 allocs, 183,821 frees, 1,381,063,922 bytes allocated +==41481== +==41481== LEAK SUMMARY: +==41481== definitely lost: 0 bytes in 0 blocks +==41481== indirectly lost: 0 bytes in 0 blocks +==41481== possibly lost: 0 bytes in 0 blocks +==41481== still reachable: 24 bytes in 2 blocks +==41481== suppressed: 618,330 bytes in 8,236 blocks +==41481== Reachable blocks (those to which a pointer was found) are not shown. +==41481== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41481== +==41481== For lists of detected and suppressed errors, rerun with: -s +==41481== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestBidomainWithBathProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBidomainWithBathProblem_valgrind.txt new file mode 100644 index 000000000..85b1f2ec1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBidomainWithBathProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41499== Memcheck, a memory error detector +==41499== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41499== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41499== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithBathProblem -malloc_debug -malloc_dump -memory_info +==41499== Parent PID: 24057 +==41499== +==41499== +==41499== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41499== Open file descriptor 12: +==41499== at 0xAC6E07D: pipe (pipe.c:29) +==41499== by 0x1432F07D: ??? +==41499== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41499== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41499== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41499== by 0xAFF9D38: PetscInitialize (pinit.c:924) +==41499== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41499== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41499== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41499== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41499== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41499== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41499== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41499== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41499== +==41499== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41499== at 0xAC72A1C: __open_nocancel (open64_nocancel.c:39) +==41499== by 0xABF6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41499== by 0xA4AE822: ??? +==41499== by 0xA4AE96F: ??? +==41499== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41499== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41499== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41499== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41499== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41499== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41499== by 0xAFF9D38: PetscInitialize (pinit.c:924) +==41499== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41499== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41499== by 0x14218A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41499== by 0x13BB8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41499== by 0x13F14C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41499== by 0x13EFEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41499== by 0x13F683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41499== by 0x139E15: main (TestBidomainWithBathProblem.cpp:19) +==41499== +==41499== Open file descriptor 158: +==41499== +==41499== +==41499== Open file descriptor 155: +==41499== +==41499== +==41499== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithBathProblem_valgrind.txt +==41499== +==41499== +==41499== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41499== +==41499== +==41499== +==41499== HEAP SUMMARY: +==41499== in use at exit: 618,761 bytes in 8,244 blocks +==41499== total heap usage: 1,394,280 allocs, 1,386,036 frees, 1,987,571,632 bytes allocated +==41499== +==41499== LEAK SUMMARY: +==41499== definitely lost: 0 bytes in 0 blocks +==41499== indirectly lost: 0 bytes in 0 blocks +==41499== possibly lost: 0 bytes in 0 blocks +==41499== still reachable: 24 bytes in 2 blocks +==41499== suppressed: 618,737 bytes in 8,242 blocks +==41499== Reachable blocks (those to which a pointer was found) are not shown. +==41499== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41499== +==41499== For lists of detected and suppressed errors, rerun with: -s +==41499== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 69 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestBidomainWithSvi_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBidomainWithSvi_valgrind.txt new file mode 100644 index 000000000..260af46e6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBidomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==41500== Memcheck, a memory error detector +==41500== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41500== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41500== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info +==41500== Parent PID: 24057 +==41500== +==41500== +==41500== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41500== Open file descriptor 12: +==41500== at 0xA7EA07D: pipe (pipe.c:29) +==41500== by 0x1432F07D: ??? +==41500== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41500== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41500== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41500== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41500== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41500== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41500== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41500== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41500== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41500== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41500== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41500== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41500== +==41500== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41500== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==41500== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41500== by 0xA111822: ??? +==41500== by 0xA11196F: ??? +==41500== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41500== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41500== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41500== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41500== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41500== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41500== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41500== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41500== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41500== by 0x120EA2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41500== by 0x11C673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41500== by 0x11EA90: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41500== by 0x11E98B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41500== by 0x11EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41500== by 0x11AE75: main (TestBidomainWithSvi.cpp:18) +==41500== +==41500== Open file descriptor 158: +==41500== +==41500== +==41500== Open file descriptor 155: +==41500== +==41500== +==41500== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainWithSvi_valgrind.txt +==41500== +==41500== +==41500== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41500== +==41500== +==41500== +==41500== HEAP SUMMARY: +==41500== in use at exit: 618,761 bytes in 8,244 blocks +==41500== total heap usage: 3,540,033 allocs, 3,531,789 frees, 2,046,653,064 bytes allocated +==41500== +==41500== LEAK SUMMARY: +==41500== definitely lost: 0 bytes in 0 blocks +==41500== indirectly lost: 0 bytes in 0 blocks +==41500== possibly lost: 0 bytes in 0 blocks +==41500== still reachable: 24 bytes in 2 blocks +==41500== suppressed: 618,737 bytes in 8,242 blocks +==41500== Reachable blocks (those to which a pointer was found) are not shown. +==41500== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41500== +==41500== For lists of detected and suppressed errors, rerun with: -s +==41500== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 72 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestBoundaryConditionsContainer_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBoundaryConditionsContainer_valgrind.txt new file mode 100644 index 000000000..b96614591 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBoundaryConditionsContainer_valgrind.txt @@ -0,0 +1,73 @@ +==25249== Memcheck, a memory error detector +==25249== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25249== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25249== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestBoundaryConditionsContainer -malloc_debug -malloc_dump -memory_info +==25249== Parent PID: 24057 +==25249== +==25249== +==25249== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25249== Open file descriptor 12: +==25249== at 0x844A07D: pipe (pipe.c:29) +==25249== by 0x104DE07D: ??? +==25249== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25249== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0x6B19D38: PetscInitialize (pinit.c:924) +==25249== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25249== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25249== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25249== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25249== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25249== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25249== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25249== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25249== +==25249== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25249== at 0x844EA1C: __open_nocancel (open64_nocancel.c:39) +==25249== by 0x83D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25249== by 0x69CB822: ??? +==25249== by 0x69CB96F: ??? +==25249== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25249== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25249== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25249== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25249== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25249== by 0x6B19D38: PetscInitialize (pinit.c:924) +==25249== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25249== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25249== by 0x13D842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25249== by 0x13868F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25249== by 0x13B1AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25249== by 0x13B0A6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25249== by 0x13B6B9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25249== by 0x136E85: main (TestBoundaryConditionsContainer.cpp:18) +==25249== +==25249== Open file descriptor 158: +==25249== +==25249== +==25249== Open file descriptor 155: +==25249== +==25249== +==25249== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBoundaryConditionsContainer_valgrind.txt +==25249== +==25249== +==25249== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25249== +==25249== +==25249== +==25249== HEAP SUMMARY: +==25249== in use at exit: 618,274 bytes in 8,238 blocks +==25249== total heap usage: 54,304 allocs, 46,066 frees, 1,340,403,445 bytes allocated +==25249== +==25249== LEAK SUMMARY: +==25249== definitely lost: 0 bytes in 0 blocks +==25249== indirectly lost: 0 bytes in 0 blocks +==25249== possibly lost: 0 bytes in 0 blocks +==25249== still reachable: 24 bytes in 2 blocks +==25249== suppressed: 618,250 bytes in 8,236 blocks +==25249== Reachable blocks (those to which a pointer was found) are not shown. +==25249== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25249== +==25249== For lists of detected and suppressed errors, rerun with: -s +==25249== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestBuskeForces_valgrind.txt b/log-files/2025-02-12_21-17-58/TestBuskeForces_valgrind.txt new file mode 100644 index 000000000..998250a99 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==26007== Memcheck, a memory error detector +==26007== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26007== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26007== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestBuskeForces -malloc_debug -malloc_dump -memory_info +==26007== Parent PID: 24057 +==26007== +==26007== +==26007== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26007== Open file descriptor 12: +==26007== at 0xF92C07D: pipe (pipe.c:29) +==26007== by 0x196B407D: ??? +==26007== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26007== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26007== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26007== by 0x10218D38: PetscInitialize (pinit.c:924) +==26007== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26007== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26007== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26007== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26007== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26007== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26007== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26007== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==26007== +==26007== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26007== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26007== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26007== by 0xF144822: ??? +==26007== by 0xF14496F: ??? +==26007== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26007== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26007== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26007== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26007== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26007== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26007== by 0x10218D38: PetscInitialize (pinit.c:924) +==26007== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26007== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26007== by 0x1373C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26007== by 0x1302A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26007== by 0x132EDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26007== by 0x132DD7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26007== by 0x1333EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26007== by 0x12EAA5: main (TestBuskeForces.cpp:18) +==26007== +==26007== Open file descriptor 158: +==26007== +==26007== +==26007== Open file descriptor 155: +==26007== +==26007== +==26007== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBuskeForces_valgrind.txt +==26007== +==26007== +==26007== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26007== +==26007== +==26007== +==26007== HEAP SUMMARY: +==26007== in use at exit: 618,370 bytes in 8,239 blocks +==26007== total heap usage: 56,076 allocs, 47,837 frees, 1,339,842,395 bytes allocated +==26007== +==26007== LEAK SUMMARY: +==26007== definitely lost: 0 bytes in 0 blocks +==26007== indirectly lost: 0 bytes in 0 blocks +==26007== possibly lost: 0 bytes in 0 blocks +==26007== still reachable: 56 bytes in 3 blocks +==26007== suppressed: 618,314 bytes in 8,236 blocks +==26007== Reachable blocks (those to which a pointer was found) are not shown. +==26007== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26007== +==26007== For lists of detected and suppressed errors, rerun with: -s +==26007== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCaBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..000ad4a5d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26029== Memcheck, a memory error detector +==26029== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26029== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26029== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26029== Parent PID: 24057 +==26029== +==26029== +==26029== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26029== Open file descriptor 12: +==26029== at 0xF84307D: pipe (pipe.c:29) +==26029== by 0x196B407D: ??? +==26029== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26029== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26029== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26029== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26029== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26029== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26029== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26029== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26029== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26029== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26029== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26029== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==26029== +==26029== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26029== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26029== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26029== by 0xF144822: ??? +==26029== by 0xF14496F: ??? +==26029== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26029== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26029== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26029== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26029== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26029== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26029== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26029== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26029== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26029== by 0x16556C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26029== by 0x15DBC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26029== by 0x160D98: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26029== by 0x160C38: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26029== by 0x1612CF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26029== by 0x15BFE5: main (TestCaBasedCellPopulation.cpp:19) +==26029== +==26029== Open file descriptor 158: +==26029== +==26029== +==26029== Open file descriptor 155: +==26029== +==26029== +==26029== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedCellPopulation_valgrind.txt +==26029== +==26029== +==26029== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26029== +==26029== +==26029== +==26029== HEAP SUMMARY: +==26029== in use at exit: 618,370 bytes in 8,239 blocks +==26029== total heap usage: 75,868 allocs, 67,629 frees, 1,347,378,914 bytes allocated +==26029== +==26029== LEAK SUMMARY: +==26029== definitely lost: 0 bytes in 0 blocks +==26029== indirectly lost: 0 bytes in 0 blocks +==26029== possibly lost: 0 bytes in 0 blocks +==26029== still reachable: 56 bytes in 3 blocks +==26029== suppressed: 618,314 bytes in 8,236 blocks +==26029== Reachable blocks (those to which a pointer was found) are not shown. +==26029== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26029== +==26029== For lists of detected and suppressed errors, rerun with: -s +==26029== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCaBasedDivisionRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..9f67dfcf6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26036== Memcheck, a memory error detector +==26036== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26036== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26036== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26036== Parent PID: 24057 +==26036== +==26036== +==26036== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26036== Open file descriptor 12: +==26036== at 0xF09707D: pipe (pipe.c:29) +==26036== by 0x196B507D: ??? +==26036== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26036== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26036== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26036== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26036== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26036== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26036== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26036== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26036== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26036== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26036== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26036== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==26036== +==26036== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26036== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==26036== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26036== by 0xD4DF822: ??? +==26036== by 0xD4DF96F: ??? +==26036== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26036== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26036== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26036== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26036== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26036== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26036== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26036== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26036== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26036== by 0x12E085: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26036== by 0x128EDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26036== by 0x12B8BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26036== by 0x12B75E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26036== by 0x12BDF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26036== by 0x127305: main (TestCaBasedDivisionRules.cpp:19) +==26036== +==26036== Open file descriptor 158: +==26036== +==26036== +==26036== Open file descriptor 155: +==26036== +==26036== +==26036== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaBasedDivisionRules_valgrind.txt +==26036== +==26036== +==26036== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26036== +==26036== +==26036== +==26036== HEAP SUMMARY: +==26036== in use at exit: 618,386 bytes in 8,240 blocks +==26036== total heap usage: 56,338 allocs, 48,098 frees, 1,339,110,534 bytes allocated +==26036== +==26036== LEAK SUMMARY: +==26036== definitely lost: 0 bytes in 0 blocks +==26036== indirectly lost: 0 bytes in 0 blocks +==26036== possibly lost: 0 bytes in 0 blocks +==26036== still reachable: 72 bytes in 4 blocks +==26036== suppressed: 618,314 bytes in 8,236 blocks +==26036== Reachable blocks (those to which a pointer was found) are not shown. +==26036== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26036== +==26036== For lists of detected and suppressed errors, rerun with: -s +==26036== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCaUpdateRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCaUpdateRules_valgrind.txt new file mode 100644 index 000000000..0e8ee220a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCaUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==26037== Memcheck, a memory error detector +==26037== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26037== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26037== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info +==26037== Parent PID: 24057 +==26037== +==26037== +==26037== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26037== Open file descriptor 12: +==26037== at 0xDBE007D: pipe (pipe.c:29) +==26037== by 0x196B407D: ??? +==26037== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26037== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x10131D38: PetscInitialize (pinit.c:924) +==26037== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26037== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26037== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26037== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26037== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26037== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26037== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26037== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==26037== +==26037== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26037== at 0xDBE4A1C: __open_nocancel (open64_nocancel.c:39) +==26037== by 0xDB68BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26037== by 0xD4DF822: ??? +==26037== by 0xD4DF96F: ??? +==26037== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26037== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26037== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26037== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26037== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26037== by 0x10131D38: PetscInitialize (pinit.c:924) +==26037== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26037== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26037== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26037== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26037== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26037== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26037== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26037== by 0x12A645: main (TestCaUpdateRules.cpp:18) +==26037== +==26037== Open file descriptor 158: +==26037== +==26037== +==26037== Open file descriptor 155: +==26037== +==26037== +==26037== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt +==26037== +==26037== +==26037== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26037== +==26037== +==26037== +==26037== HEAP SUMMARY: +==26037== in use at exit: 618,370 bytes in 8,239 blocks +==26037== total heap usage: 55,757 allocs, 47,518 frees, 1,339,202,386 bytes allocated +==26037== +==26037== LEAK SUMMARY: +==26037== definitely lost: 0 bytes in 0 blocks +==26037== indirectly lost: 0 bytes in 0 blocks +==26037== possibly lost: 0 bytes in 0 blocks +==26037== still reachable: 56 bytes in 3 blocks +==26037== suppressed: 618,314 bytes in 8,236 blocks +==26037== Reachable blocks (those to which a pointer was found) are not shown. +==26037== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26037== +==26037== For lists of detected and suppressed errors, rerun with: -s +==26037== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCableTestProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCableTestProblem_valgrind.txt new file mode 100644 index 000000000..1f94f3011 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25096== Memcheck, a memory error detector +==25096== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25096== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25096== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCableTestProblem -malloc_debug -malloc_dump -memory_info +==25096== Parent PID: 24057 +==25096== +==25096== +==25096== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25096== Open file descriptor 12: +==25096== at 0x84EF07D: pipe (pipe.c:29) +==25096== by 0x104DE07D: ??? +==25096== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25096== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25096== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25096== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25096== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25096== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25096== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25096== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25096== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25096== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25096== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25096== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25096== +==25096== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25096== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25096== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25096== by 0x7D49822: ??? +==25096== by 0x7D4996F: ??? +==25096== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25096== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25096== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25096== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25096== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25096== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25096== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25096== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25096== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25096== by 0x1419F6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25096== by 0x13CAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25096== by 0x13F69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25096== by 0x13F595: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25096== by 0x13FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25096== by 0x13B2F5: main (TestCableTestProblem.cpp:18) +==25096== +==25096== Open file descriptor 158: +==25096== +==25096== +==25096== Open file descriptor 155: +==25096== +==25096== +==25096== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCableTestProblem_valgrind.txt +==25096== +==25096== +==25096== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25096== +==25096== +==25096== +==25096== HEAP SUMMARY: +==25096== in use at exit: 618,274 bytes in 8,238 blocks +==25096== total heap usage: 104,259 allocs, 96,021 frees, 1,341,043,085 bytes allocated +==25096== +==25096== LEAK SUMMARY: +==25096== definitely lost: 0 bytes in 0 blocks +==25096== indirectly lost: 0 bytes in 0 blocks +==25096== possibly lost: 0 bytes in 0 blocks +==25096== still reachable: 24 bytes in 2 blocks +==25096== suppressed: 618,250 bytes in 8,236 blocks +==25096== Reachable blocks (those to which a pointer was found) are not shown. +==25096== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25096== +==25096== For lists of detected and suppressed errors, rerun with: -s +==25096== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt new file mode 100644 index 000000000..5ec3b36fa --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt @@ -0,0 +1,73 @@ +==43609== Memcheck, a memory error detector +==43609== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43609== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43609== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsFurtherFunctionality -malloc_debug -malloc_dump -memory_info +==43609== Parent PID: 24057 +==43609== +==43609== +==43609== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43609== Open file descriptor 12: +==43609== at 0xBDB307D: pipe (pipe.c:29) +==43609== by 0x1432F07D: ??? +==43609== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43609== by 0xBFB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43609== by 0xBF49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43609== by 0xA35ED38: PetscInitialize (pinit.c:924) +==43609== by 0xA2351D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43609== by 0xA235227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43609== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43609== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43609== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43609== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43609== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43609== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43609== +==43609== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43609== at 0xBDB7A1C: __open_nocancel (open64_nocancel.c:39) +==43609== by 0xBD3BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43609== by 0xB5F3822: ??? +==43609== by 0xB5F396F: ??? +==43609== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43609== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43609== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43609== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43609== by 0xBFB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43609== by 0xBF49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43609== by 0xA35ED38: PetscInitialize (pinit.c:924) +==43609== by 0xA2351D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43609== by 0xA235227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43609== by 0x123A6C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43609== by 0x11EC6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43609== by 0x1213DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43609== by 0x12127F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43609== by 0x121915: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43609== by 0x11D095: main (TestCardiacElectroMechanicsFurtherFunctionality.cpp:19) +==43609== +==43609== Open file descriptor 158: +==43609== +==43609== +==43609== Open file descriptor 155: +==43609== +==43609== +==43609== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsFurtherFunctionality_valgrind.txt +==43609== +==43609== +==43609== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43609== +==43609== +==43609== +==43609== HEAP SUMMARY: +==43609== in use at exit: 618,761 bytes in 8,244 blocks +==43609== total heap usage: 1,208,683 allocs, 1,200,439 frees, 1,496,676,407 bytes allocated +==43609== +==43609== LEAK SUMMARY: +==43609== definitely lost: 0 bytes in 0 blocks +==43609== indirectly lost: 0 bytes in 0 blocks +==43609== possibly lost: 0 bytes in 0 blocks +==43609== still reachable: 24 bytes in 2 blocks +==43609== suppressed: 618,737 bytes in 8,242 blocks +==43609== Reachable blocks (those to which a pointer was found) are not shown. +==43609== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43609== +==43609== For lists of detected and suppressed errors, rerun with: -s +==43609== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCardiacElectroMechanicsProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCardiacElectroMechanicsProblem_valgrind.txt new file mode 100644 index 000000000..1f81d4bbb --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCardiacElectroMechanicsProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43594== Memcheck, a memory error detector +==43594== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43594== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43594== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info +==43594== Parent PID: 24057 +==43594== +==43594== +==43594== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43594== Open file descriptor 12: +==43594== at 0xABFB07D: pipe (pipe.c:29) +==43594== by 0x1432F07D: ??? +==43594== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43594== by 0xA402418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43594== by 0xA39BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43594== by 0xAE06D38: PetscInitialize (pinit.c:924) +==43594== by 0xA2C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43594== by 0xA2C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43594== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43594== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43594== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43594== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43594== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43594== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43594== +==43594== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43594== at 0xABFFA1C: __open_nocancel (open64_nocancel.c:39) +==43594== by 0xAB83BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43594== by 0xA304822: ??? +==43594== by 0xA30496F: ??? +==43594== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43594== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43594== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43594== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43594== by 0xA402418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43594== by 0xA39BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43594== by 0xAE06D38: PetscInitialize (pinit.c:924) +==43594== by 0xA2C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43594== by 0xA2C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43594== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43594== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43594== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43594== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43594== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43594== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) +==43594== +==43594== Open file descriptor 158: +==43594== +==43594== +==43594== Open file descriptor 155: +==43594== +==43594== +==43594== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt +==43594== +==43594== +==43594== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43594== +==43594== +==43594== +==43594== HEAP SUMMARY: +==43594== in use at exit: 618,834 bytes in 8,248 blocks +==43594== total heap usage: 583,438 allocs, 575,190 frees, 1,482,518,304 bytes allocated +==43594== +==43594== LEAK SUMMARY: +==43594== definitely lost: 0 bytes in 0 blocks +==43594== indirectly lost: 0 bytes in 0 blocks +==43594== possibly lost: 0 bytes in 0 blocks +==43594== still reachable: 24 bytes in 2 blocks +==43594== suppressed: 618,810 bytes in 8,246 blocks +==43594== Reachable blocks (those to which a pointer was found) are not shown. +==43594== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43594== +==43594== For lists of detected and suppressed errors, rerun with: -s +==43594== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 79 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestCardiacSimulationArchiver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCardiacSimulationArchiver_valgrind.txt new file mode 100644 index 000000000..136b600b6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCardiacSimulationArchiver_valgrind.txt @@ -0,0 +1,73 @@ +==44027== Memcheck, a memory error detector +==44027== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44027== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44027== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulationArchiver -malloc_debug -malloc_dump -memory_info +==44027== Parent PID: 24057 +==44027== +==44027== +==44027== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44027== Open file descriptor 12: +==44027== at 0xBFBA07D: pipe (pipe.c:29) +==44027== by 0x1432F07D: ??? +==44027== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44027== by 0xC337418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44027== by 0xC2D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44027== by 0xA671D38: PetscInitialize (pinit.c:924) +==44027== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44027== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44027== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44027== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44027== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44027== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44027== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44027== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==44027== +==44027== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44027== at 0xBFBEA1C: __open_nocancel (open64_nocancel.c:39) +==44027== by 0xBF42BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44027== by 0xA521822: ??? +==44027== by 0xA52196F: ??? +==44027== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44027== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44027== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44027== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44027== by 0xC337418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44027== by 0xC2D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44027== by 0xA671D38: PetscInitialize (pinit.c:924) +==44027== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44027== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44027== by 0x207DA8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44027== by 0x200F5B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44027== by 0x204A44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44027== by 0x2048E4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44027== by 0x204F7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44027== by 0x1FF1D5: main (TestCardiacSimulationArchiver.cpp:19) +==44027== +==44027== Open file descriptor 158: +==44027== +==44027== +==44027== Open file descriptor 155: +==44027== +==44027== +==44027== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulationArchiver_valgrind.txt +==44027== +==44027== +==44027== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44027== +==44027== +==44027== +==44027== HEAP SUMMARY: +==44027== in use at exit: 618,761 bytes in 8,244 blocks +==44027== total heap usage: 2,894,954 allocs, 2,886,710 frees, 2,307,098,631 bytes allocated +==44027== +==44027== LEAK SUMMARY: +==44027== definitely lost: 0 bytes in 0 blocks +==44027== indirectly lost: 0 bytes in 0 blocks +==44027== possibly lost: 0 bytes in 0 blocks +==44027== still reachable: 24 bytes in 2 blocks +==44027== suppressed: 618,737 bytes in 8,242 blocks +==44027== Reachable blocks (those to which a pointer was found) are not shown. +==44027== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44027== +==44027== For lists of detected and suppressed errors, rerun with: -s +==44027== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 138 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCardiacSimulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCardiacSimulation_valgrind.txt new file mode 100644 index 000000000..cebe8b594 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCardiacSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==44025== Memcheck, a memory error detector +==44025== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44025== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44025== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacSimulation -malloc_debug -malloc_dump -memory_info +==44025== Parent PID: 24057 +==44025== +==44025== +==44025== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44025== Open file descriptor 12: +==44025== at 0x892707D: pipe (pipe.c:29) +==44025== by 0x1433007D: ??? +==44025== by 0xEE784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44025== by 0xA022418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44025== by 0x9FBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44025== by 0x8CB2D38: PetscInitialize (pinit.c:924) +==44025== by 0x82101D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44025== by 0x8210227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44025== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44025== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44025== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44025== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44025== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44025== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==44025== +==44025== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44025== at 0x892BA1C: __open_nocancel (open64_nocancel.c:39) +==44025== by 0x88AFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44025== by 0x8250822: ??? +==44025== by 0x825096F: ??? +==44025== by 0xEF1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44025== by 0xEF1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44025== by 0xEED3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44025== by 0xEE782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44025== by 0xA022418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44025== by 0x9FBBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44025== by 0x8CB2D38: PetscInitialize (pinit.c:924) +==44025== by 0x82101D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44025== by 0x8210227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44025== by 0x1202B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44025== by 0x11A98D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44025== by 0x11E13C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44025== by 0x11DFDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44025== by 0x11E673: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44025== by 0x118DB5: main (TestCardiacSimulation.cpp:19) +==44025== +==44025== Open file descriptor 158: +==44025== +==44025== +==44025== Open file descriptor 155: +==44025== +==44025== +==44025== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacSimulation_valgrind.txt +==44025== +==44025== +==44025== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44025== +==44025== +==44025== +==44025== HEAP SUMMARY: +==44025== in use at exit: 625,893 bytes in 8,260 blocks +==44025== total heap usage: 4,756,901 allocs, 4,748,641 frees, 2,828,621,808 bytes allocated +==44025== +==44025== LEAK SUMMARY: +==44025== definitely lost: 0 bytes in 0 blocks +==44025== indirectly lost: 0 bytes in 0 blocks +==44025== possibly lost: 0 bytes in 0 blocks +==44025== still reachable: 7,156 bytes in 18 blocks +==44025== suppressed: 618,737 bytes in 8,242 blocks +==44025== Reachable blocks (those to which a pointer was found) are not shown. +==44025== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44025== +==44025== For lists of detected and suppressed errors, rerun with: -s +==44025== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 228 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestCellBasedCellProperties_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellBasedCellProperties_valgrind.txt new file mode 100644 index 000000000..1249286ed --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellBasedCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==25456== Memcheck, a memory error detector +==25456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedCellProperties -malloc_debug -malloc_dump -memory_info +==25456== Parent PID: 24057 +==25456== +==25456== +==25456== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25456== Open file descriptor 12: +==25456== at 0xED5007D: pipe (pipe.c:29) +==25456== by 0x196B507D: ??? +==25456== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25456== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25456== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25456== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25456== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25456== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25456== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25456== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25456== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25456== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25456== +==25456== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25456== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25456== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25456== by 0xD4DF822: ??? +==25456== by 0xD4DF96F: ??? +==25456== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25456== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25456== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25456== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25456== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25456== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25456== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25456== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25456== by 0x12F18B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25456== by 0x129EE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25456== by 0x12CAE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25456== by 0x12C980: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25456== by 0x12D017: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25456== by 0x128305: main (TestCellBasedCellProperties.cpp:19) +==25456== +==25456== Open file descriptor 158: +==25456== +==25456== +==25456== Open file descriptor 155: +==25456== +==25456== +==25456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedCellProperties_valgrind.txt +==25456== +==25456== +==25456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25456== +==25456== +==25456== +==25456== HEAP SUMMARY: +==25456== in use at exit: 618,370 bytes in 8,239 blocks +==25456== total heap usage: 53,421 allocs, 45,182 frees, 1,338,996,180 bytes allocated +==25456== +==25456== LEAK SUMMARY: +==25456== definitely lost: 0 bytes in 0 blocks +==25456== indirectly lost: 0 bytes in 0 blocks +==25456== possibly lost: 0 bytes in 0 blocks +==25456== still reachable: 56 bytes in 3 blocks +==25456== suppressed: 618,314 bytes in 8,236 blocks +==25456== Reachable blocks (those to which a pointer was found) are not shown. +==25456== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25456== +==25456== For lists of detected and suppressed errors, rerun with: -s +==25456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellBasedEllipticPdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellBasedEllipticPdeSolver_valgrind.txt new file mode 100644 index 000000000..c3ca2c514 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellBasedEllipticPdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25574== Memcheck, a memory error detector +==25574== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25574== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25574== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdeSolver -malloc_debug -malloc_dump -memory_info +==25574== Parent PID: 24057 +==25574== +==25574== +==25574== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25574== Open file descriptor 12: +==25574== at 0x1109407D: pipe (pipe.c:29) +==25574== by 0x196B407D: ??? +==25574== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25574== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25574== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25574== by 0xF659D38: PetscInitialize (pinit.c:924) +==25574== by 0xF5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25574== by 0xF530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25574== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25574== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25574== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25574== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25574== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25574== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25574== +==25574== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25574== at 0x11098A1C: __open_nocancel (open64_nocancel.c:39) +==25574== by 0x1101CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25574== by 0x108EE822: ??? +==25574== by 0x108EE96F: ??? +==25574== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25574== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25574== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25574== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25574== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25574== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25574== by 0xF659D38: PetscInitialize (pinit.c:924) +==25574== by 0xF5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25574== by 0xF530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25574== by 0x13C922: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25574== by 0x137A33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25574== by 0x13A5DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25574== by 0x13A4D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25574== by 0x13AAE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25574== by 0x136235: main (TestCellBasedEllipticPdeSolver.cpp:18) +==25574== +==25574== Open file descriptor 158: +==25574== +==25574== +==25574== Open file descriptor 155: +==25574== +==25574== +==25574== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdeSolver_valgrind.txt +==25574== +==25574== +==25574== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25574== +==25574== +==25574== +==25574== HEAP SUMMARY: +==25574== in use at exit: 618,338 bytes in 8,238 blocks +==25574== total heap usage: 55,378 allocs, 47,140 frees, 1,339,445,556 bytes allocated +==25574== +==25574== LEAK SUMMARY: +==25574== definitely lost: 0 bytes in 0 blocks +==25574== indirectly lost: 0 bytes in 0 blocks +==25574== possibly lost: 0 bytes in 0 blocks +==25574== still reachable: 24 bytes in 2 blocks +==25574== suppressed: 618,314 bytes in 8,236 blocks +==25574== Reachable blocks (those to which a pointer was found) are not shown. +==25574== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25574== +==25574== For lists of detected and suppressed errors, rerun with: -s +==25574== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellBasedEllipticPdes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellBasedEllipticPdes_valgrind.txt new file mode 100644 index 000000000..a96cacc80 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellBasedEllipticPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25566== Memcheck, a memory error detector +==25566== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25566== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25566== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedEllipticPdes -malloc_debug -malloc_dump -memory_info +==25566== Parent PID: 24057 +==25566== +==25566== +==25566== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25566== Open file descriptor 12: +==25566== at 0x10CFA07D: pipe (pipe.c:29) +==25566== by 0x196B407D: ??? +==25566== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25566== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25566== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25566== by 0xF292D38: PetscInitialize (pinit.c:924) +==25566== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25566== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25566== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25566== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25566== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25566== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25566== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25566== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25566== +==25566== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25566== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==25566== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25566== by 0xF144822: ??? +==25566== by 0xF14496F: ??? +==25566== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25566== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25566== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25566== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25566== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25566== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25566== by 0xF292D38: PetscInitialize (pinit.c:924) +==25566== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25566== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25566== by 0x12CAB7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25566== by 0x127CC3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25566== by 0x12A3DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25566== by 0x12A2D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25566== by 0x12A8EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25566== by 0x1264C5: main (TestCellBasedEllipticPdes.cpp:18) +==25566== +==25566== Open file descriptor 158: +==25566== +==25566== +==25566== Open file descriptor 155: +==25566== +==25566== +==25566== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEllipticPdes_valgrind.txt +==25566== +==25566== +==25566== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25566== +==25566== +==25566== +==25566== HEAP SUMMARY: +==25566== in use at exit: 618,370 bytes in 8,239 blocks +==25566== total heap usage: 79,217 allocs, 70,978 frees, 1,343,929,261 bytes allocated +==25566== +==25566== LEAK SUMMARY: +==25566== definitely lost: 0 bytes in 0 blocks +==25566== indirectly lost: 0 bytes in 0 blocks +==25566== possibly lost: 0 bytes in 0 blocks +==25566== still reachable: 56 bytes in 3 blocks +==25566== suppressed: 618,314 bytes in 8,236 blocks +==25566== Reachable blocks (those to which a pointer was found) are not shown. +==25566== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25566== +==25566== For lists of detected and suppressed errors, rerun with: -s +==25566== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellBasedEventHandler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellBasedEventHandler_valgrind.txt new file mode 100644 index 000000000..9696065ce --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellBasedEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24087== Memcheck, a memory error detector +==24087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24087== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCellBasedEventHandler -malloc_debug -malloc_dump -memory_info +==24087== Parent PID: 24057 +==24087== +==24087== +==24087== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24087== Open file descriptor 12: +==24087== at 0x4DEB07D: pipe (pipe.c:29) +==24087== by 0xAEA307D: ??? +==24087== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24087== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x5036D38: PetscInitialize (pinit.c:924) +==24087== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24087== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24087== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24087== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24087== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24087== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24087== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24087== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==24087== +==24087== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24087== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24087== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24087== by 0x493A822: ??? +==24087== by 0x493A96F: ??? +==24087== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24087== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24087== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24087== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24087== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24087== by 0x5036D38: PetscInitialize (pinit.c:924) +==24087== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24087== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24087== by 0x114A22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24087== by 0x110173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24087== by 0x112AEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24087== by 0x1129E7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24087== by 0x112FFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24087== by 0x10E975: main (TestCellBasedEventHandler.cpp:18) +==24087== +==24087== Open file descriptor 158: +==24087== +==24087== +==24087== Open file descriptor 155: +==24087== +==24087== +==24087== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedEventHandler_valgrind.txt +==24087== +==24087== +==24087== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24087== +==24087== +==24087== +==24087== HEAP SUMMARY: +==24087== in use at exit: 617,874 bytes in 8,238 blocks +==24087== total heap usage: 44,913 allocs, 36,675 frees, 1,338,160,624 bytes allocated +==24087== +==24087== LEAK SUMMARY: +==24087== definitely lost: 0 bytes in 0 blocks +==24087== indirectly lost: 0 bytes in 0 blocks +==24087== possibly lost: 0 bytes in 0 blocks +==24087== still reachable: 24 bytes in 2 blocks +==24087== suppressed: 617,850 bytes in 8,236 blocks +==24087== Reachable blocks (those to which a pointer was found) are not shown. +==24087== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24087== +==24087== For lists of detected and suppressed errors, rerun with: -s +==24087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCellBasedParabolicPdes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellBasedParabolicPdes_valgrind.txt new file mode 100644 index 000000000..0cf50df08 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellBasedParabolicPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25588== Memcheck, a memory error detector +==25588== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25588== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25588== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellBasedParabolicPdes -malloc_debug -malloc_dump -memory_info +==25588== Parent PID: 24057 +==25588== +==25588== +==25588== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25588== Open file descriptor 12: +==25588== at 0x10CFA07D: pipe (pipe.c:29) +==25588== by 0x196B407D: ??? +==25588== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25588== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25588== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25588== by 0xF292D38: PetscInitialize (pinit.c:924) +==25588== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25588== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25588== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25588== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25588== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25588== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25588== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25588== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25588== +==25588== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25588== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==25588== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25588== by 0xF144822: ??? +==25588== by 0xF14496F: ??? +==25588== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25588== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25588== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25588== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25588== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25588== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25588== by 0xF292D38: PetscInitialize (pinit.c:924) +==25588== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25588== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25588== by 0x12B8B3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25588== by 0x126B23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25588== by 0x1291D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25588== by 0x1290D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25588== by 0x1296E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25588== by 0x125325: main (TestCellBasedParabolicPdes.cpp:18) +==25588== +==25588== Open file descriptor 158: +==25588== +==25588== +==25588== Open file descriptor 155: +==25588== +==25588== +==25588== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBasedParabolicPdes_valgrind.txt +==25588== +==25588== +==25588== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25588== +==25588== +==25588== +==25588== HEAP SUMMARY: +==25588== in use at exit: 618,370 bytes in 8,239 blocks +==25588== total heap usage: 69,579 allocs, 61,340 frees, 1,342,139,315 bytes allocated +==25588== +==25588== LEAK SUMMARY: +==25588== definitely lost: 0 bytes in 0 blocks +==25588== indirectly lost: 0 bytes in 0 blocks +==25588== possibly lost: 0 bytes in 0 blocks +==25588== still reachable: 56 bytes in 3 blocks +==25588== suppressed: 618,314 bytes in 8,236 blocks +==25588== Reachable blocks (those to which a pointer was found) are not shown. +==25588== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25588== +==25588== For lists of detected and suppressed errors, rerun with: -s +==25588== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellBetaCateninWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellBetaCateninWriter_valgrind.txt new file mode 100644 index 000000000..c6923f50d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellBetaCateninWriter_valgrind.txt @@ -0,0 +1,73 @@ +==40625== Memcheck, a memory error detector +==40625== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40625== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40625== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info +==40625== Parent PID: 24057 +==40625== +==40625== +==40625== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40625== Open file descriptor 12: +==40625== at 0x1110507D: pipe (pipe.c:29) +==40625== by 0x1B37507D: ??? +==40625== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40625== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40625== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40625== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40625== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40625== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40625== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40625== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40625== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40625== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40625== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40625== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40625== +==40625== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40625== at 0x11109A1C: __open_nocancel (open64_nocancel.c:39) +==40625== by 0x1108DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40625== by 0x10A04822: ??? +==40625== by 0x10A0496F: ??? +==40625== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40625== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40625== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40625== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40625== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40625== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40625== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40625== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40625== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40625== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40625== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40625== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40625== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40625== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40625== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) +==40625== +==40625== Open file descriptor 158: +==40625== +==40625== +==40625== Open file descriptor 155: +==40625== +==40625== +==40625== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt +==40625== +==40625== +==40625== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40625== +==40625== +==40625== +==40625== HEAP SUMMARY: +==40625== in use at exit: 618,466 bytes in 8,240 blocks +==40625== total heap usage: 63,279 allocs, 55,039 frees, 1,341,084,761 bytes allocated +==40625== +==40625== LEAK SUMMARY: +==40625== definitely lost: 0 bytes in 0 blocks +==40625== indirectly lost: 0 bytes in 0 blocks +==40625== possibly lost: 0 bytes in 0 blocks +==40625== still reachable: 136 bytes in 4 blocks +==40625== suppressed: 618,330 bytes in 8,236 blocks +==40625== Reachable blocks (those to which a pointer was found) are not shown. +==40625== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40625== +==40625== For lists of detected and suppressed errors, rerun with: -s +==40625== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellCycleModelOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellCycleModelOdeSolver_valgrind.txt new file mode 100644 index 000000000..584975f0f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellCycleModelOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25465== Memcheck, a memory error detector +==25465== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25465== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25465== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info +==25465== Parent PID: 24057 +==25465== +==25465== +==25465== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25465== Open file descriptor 12: +==25465== at 0xEF9407D: pipe (pipe.c:29) +==25465== by 0x196B507D: ??? +==25465== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25465== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25465== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25465== by 0xD871D38: PetscInitialize (pinit.c:924) +==25465== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25465== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25465== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25465== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25465== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25465== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25465== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25465== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25465== +==25465== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25465== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25465== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25465== by 0xD723822: ??? +==25465== by 0xD72396F: ??? +==25465== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25465== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25465== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25465== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25465== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25465== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25465== by 0xD871D38: PetscInitialize (pinit.c:924) +==25465== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25465== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25465== by 0x162DFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25465== by 0x15D597: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25465== by 0x1604CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25465== by 0x16036A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25465== by 0x160A01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25465== by 0x15B575: main (TestCellCycleModelOdeSolver.cpp:19) +==25465== +==25465== Open file descriptor 158: +==25465== +==25465== +==25465== Open file descriptor 155: +==25465== +==25465== +==25465== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellCycleModelOdeSolver_valgrind.txt +==25465== +==25465== +==25465== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25465== +==25465== +==25465== +==25465== HEAP SUMMARY: +==25465== in use at exit: 618,370 bytes in 8,239 blocks +==25465== total heap usage: 547,403 allocs, 539,164 frees, 1,344,760,189 bytes allocated +==25465== +==25465== LEAK SUMMARY: +==25465== definitely lost: 0 bytes in 0 blocks +==25465== indirectly lost: 0 bytes in 0 blocks +==25465== possibly lost: 0 bytes in 0 blocks +==25465== still reachable: 56 bytes in 3 blocks +==25465== suppressed: 618,314 bytes in 8,236 blocks +==25465== Reachable blocks (those to which a pointer was found) are not shown. +==25465== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25465== +==25465== For lists of detected and suppressed errors, rerun with: -s +==25465== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellDataMaps_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellDataMaps_valgrind.txt new file mode 100644 index 000000000..89b62c7a4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellDataMaps_valgrind.txt @@ -0,0 +1,73 @@ +==25468== Memcheck, a memory error detector +==25468== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25468== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25468== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellDataMaps -malloc_debug -malloc_dump -memory_info +==25468== Parent PID: 24057 +==25468== +==25468== +==25468== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25468== Open file descriptor 12: +==25468== at 0xED9D07D: pipe (pipe.c:29) +==25468== by 0x196B507D: ??? +==25468== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25468== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25468== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25468== by 0xD659D38: PetscInitialize (pinit.c:924) +==25468== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25468== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25468== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25468== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25468== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25468== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25468== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25468== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25468== +==25468== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25468== at 0xEDA1A1C: __open_nocancel (open64_nocancel.c:39) +==25468== by 0xED25BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25468== by 0xE8EE822: ??? +==25468== by 0xE8EE96F: ??? +==25468== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25468== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25468== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25468== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25468== by 0xE9EC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25468== by 0xE985D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25468== by 0xD659D38: PetscInitialize (pinit.c:924) +==25468== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25468== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25468== by 0x11C5E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25468== by 0x11792D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25468== by 0x11A1FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25468== by 0x11A09E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25468== by 0x11A735: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25468== by 0x115D55: main (TestCellDataMaps.cpp:19) +==25468== +==25468== Open file descriptor 158: +==25468== +==25468== +==25468== Open file descriptor 155: +==25468== +==25468== +==25468== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellDataMaps_valgrind.txt +==25468== +==25468== +==25468== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25468== +==25468== +==25468== +==25468== HEAP SUMMARY: +==25468== in use at exit: 618,498 bytes in 8,240 blocks +==25468== total heap usage: 53,646 allocs, 45,406 frees, 1,338,978,674 bytes allocated +==25468== +==25468== LEAK SUMMARY: +==25468== definitely lost: 0 bytes in 0 blocks +==25468== indirectly lost: 0 bytes in 0 blocks +==25468== possibly lost: 0 bytes in 0 blocks +==25468== still reachable: 184 bytes in 4 blocks +==25468== suppressed: 618,314 bytes in 8,236 blocks +==25468== Reachable blocks (those to which a pointer was found) are not shown. +==25468== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25468== +==25468== For lists of detected and suppressed errors, rerun with: -s +==25468== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellForCrypt_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellForCrypt_valgrind.txt new file mode 100644 index 000000000..8f4f36a96 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40407== Memcheck, a memory error detector +==40407== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40407== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40407== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info +==40407== Parent PID: 24057 +==40407== +==40407== +==40407== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40407== Open file descriptor 12: +==40407== at 0xF45E07D: pipe (pipe.c:29) +==40407== by 0x1B37507D: ??? +==40407== by 0x165804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40407== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40407== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40407== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40407== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40407== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40407== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40407== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40407== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40407== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40407== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40407== by 0x118975: main (TestCellForCrypt.cpp:18) +==40407== +==40407== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40407== at 0xF462A1C: __open_nocancel (open64_nocancel.c:39) +==40407== by 0xF3E6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40407== by 0xEDA1822: ??? +==40407== by 0xEDA196F: ??? +==40407== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40407== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40407== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40407== by 0x165802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40407== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40407== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40407== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40407== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40407== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40407== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40407== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40407== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40407== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40407== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40407== by 0x118975: main (TestCellForCrypt.cpp:18) +==40407== +==40407== Open file descriptor 158: +==40407== +==40407== +==40407== Open file descriptor 155: +==40407== +==40407== +==40407== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt +==40407== +==40407== +==40407== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40407== +==40407== +==40407== +==40407== HEAP SUMMARY: +==40407== in use at exit: 618,514 bytes in 8,240 blocks +==40407== total heap usage: 55,771 allocs, 47,531 frees, 1,339,199,956 bytes allocated +==40407== +==40407== LEAK SUMMARY: +==40407== definitely lost: 0 bytes in 0 blocks +==40407== indirectly lost: 0 bytes in 0 blocks +==40407== possibly lost: 0 bytes in 0 blocks +==40407== still reachable: 184 bytes in 4 blocks +==40407== suppressed: 618,330 bytes in 8,236 blocks +==40407== Reachable blocks (those to which a pointer was found) are not shown. +==40407== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40407== +==40407== For lists of detected and suppressed errors, rerun with: -s +==40407== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellKillers_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellKillers_valgrind.txt new file mode 100644 index 000000000..f6efb69a3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==26054== Memcheck, a memory error detector +==26054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellKillers -malloc_debug -malloc_dump -memory_info +==26054== Parent PID: 24057 +==26054== +==26054== +==26054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26054== Open file descriptor 12: +==26054== at 0x10DE107D: pipe (pipe.c:29) +==26054== by 0x196B407D: ??? +==26054== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26054== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26054== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26054== by 0xF292D38: PetscInitialize (pinit.c:924) +==26054== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26054== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26054== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26054== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26054== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26054== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26054== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26054== by 0x19B655: main (TestCellKillers.cpp:19) +==26054== +==26054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26054== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26054== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26054== by 0xF144822: ??? +==26054== by 0xF14496F: ??? +==26054== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26054== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26054== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26054== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26054== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26054== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26054== by 0xF292D38: PetscInitialize (pinit.c:924) +==26054== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26054== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26054== by 0x1A5341: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26054== by 0x19D239: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26054== by 0x1A087C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26054== by 0x1A071C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26054== by 0x1A0DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26054== by 0x19B655: main (TestCellKillers.cpp:19) +==26054== +==26054== Open file descriptor 158: +==26054== +==26054== +==26054== Open file descriptor 155: +==26054== +==26054== +==26054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellKillers_valgrind.txt +==26054== +==26054== +==26054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26054== +==26054== +==26054== +==26054== HEAP SUMMARY: +==26054== in use at exit: 618,370 bytes in 8,239 blocks +==26054== total heap usage: 119,759 allocs, 111,520 frees, 1,344,138,338 bytes allocated +==26054== +==26054== LEAK SUMMARY: +==26054== definitely lost: 0 bytes in 0 blocks +==26054== indirectly lost: 0 bytes in 0 blocks +==26054== possibly lost: 0 bytes in 0 blocks +==26054== still reachable: 56 bytes in 3 blocks +==26054== suppressed: 618,314 bytes in 8,236 blocks +==26054== Reachable blocks (those to which a pointer was found) are not shown. +==26054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26054== +==26054== For lists of detected and suppressed errors, rerun with: -s +==26054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellMutationStates_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellMutationStates_valgrind.txt new file mode 100644 index 000000000..196494fa4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellMutationStates_valgrind.txt @@ -0,0 +1,73 @@ +==25477== Memcheck, a memory error detector +==25477== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25477== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25477== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellMutationStates -malloc_debug -malloc_dump -memory_info +==25477== Parent PID: 24057 +==25477== +==25477== +==25477== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25477== Open file descriptor 12: +==25477== at 0xED5007D: pipe (pipe.c:29) +==25477== by 0x196B507D: ??? +==25477== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25477== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25477== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25477== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25477== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25477== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25477== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25477== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25477== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25477== by 0x125225: main (TestCellMutationStates.cpp:19) +==25477== +==25477== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25477== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25477== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25477== by 0xD4DF822: ??? +==25477== by 0xD4DF96F: ??? +==25477== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25477== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25477== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25477== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25477== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25477== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25477== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25477== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25477== by 0x12BE69: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25477== by 0x126E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25477== by 0x129792: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25477== by 0x129632: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25477== by 0x129CC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25477== by 0x125225: main (TestCellMutationStates.cpp:19) +==25477== +==25477== Open file descriptor 158: +==25477== +==25477== +==25477== Open file descriptor 155: +==25477== +==25477== +==25477== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellMutationStates_valgrind.txt +==25477== +==25477== +==25477== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25477== +==25477== +==25477== +==25477== HEAP SUMMARY: +==25477== in use at exit: 618,370 bytes in 8,239 blocks +==25477== total heap usage: 53,165 allocs, 44,926 frees, 1,338,924,097 bytes allocated +==25477== +==25477== LEAK SUMMARY: +==25477== definitely lost: 0 bytes in 0 blocks +==25477== indirectly lost: 0 bytes in 0 blocks +==25477== possibly lost: 0 bytes in 0 blocks +==25477== still reachable: 56 bytes in 3 blocks +==25477== suppressed: 618,314 bytes in 8,236 blocks +==25477== Reachable blocks (those to which a pointer was found) are not shown. +==25477== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25477== +==25477== For lists of detected and suppressed errors, rerun with: -s +==25477== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellPopulationBoundaryConditions_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellPopulationBoundaryConditions_valgrind.txt new file mode 100644 index 000000000..dbf80215e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellPopulationBoundaryConditions_valgrind.txt @@ -0,0 +1,73 @@ +==26060== Memcheck, a memory error detector +==26060== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26060== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info +==26060== Parent PID: 24057 +==26060== +==26060== +==26060== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26060== Open file descriptor 12: +==26060== at 0xF92C07D: pipe (pipe.c:29) +==26060== by 0x196B407D: ??? +==26060== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26060== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26060== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26060== by 0x10218D38: PetscInitialize (pinit.c:924) +==26060== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26060== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26060== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26060== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26060== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26060== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26060== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26060== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==26060== +==26060== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26060== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26060== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26060== by 0xF144822: ??? +==26060== by 0xF14496F: ??? +==26060== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26060== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26060== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26060== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26060== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26060== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26060== by 0x10218D38: PetscInitialize (pinit.c:924) +==26060== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26060== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26060== by 0x1550EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26060== by 0x14DBDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26060== by 0x150A32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26060== by 0x1508D2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26060== by 0x150F69: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26060== by 0x14C005: main (TestCellPopulationBoundaryConditions.cpp:19) +==26060== +==26060== Open file descriptor 158: +==26060== +==26060== +==26060== Open file descriptor 155: +==26060== +==26060== +==26060== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationBoundaryConditions_valgrind.txt +==26060== +==26060== +==26060== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26060== +==26060== +==26060== +==26060== HEAP SUMMARY: +==26060== in use at exit: 618,370 bytes in 8,239 blocks +==26060== total heap usage: 70,317 allocs, 62,078 frees, 1,342,463,150 bytes allocated +==26060== +==26060== LEAK SUMMARY: +==26060== definitely lost: 0 bytes in 0 blocks +==26060== indirectly lost: 0 bytes in 0 blocks +==26060== possibly lost: 0 bytes in 0 blocks +==26060== still reachable: 56 bytes in 3 blocks +==26060== suppressed: 618,314 bytes in 8,236 blocks +==26060== Reachable blocks (those to which a pointer was found) are not shown. +==26060== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26060== +==26060== For lists of detected and suppressed errors, rerun with: -s +==26060== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2025-02-12_21-17-58/TestCellPopulationCountWriters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellPopulationCountWriters_valgrind.txt new file mode 100644 index 000000000..b364076e3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellPopulationCountWriters_valgrind.txt @@ -0,0 +1,73 @@ +==26063== Memcheck, a memory error detector +==26063== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26063== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26063== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationCountWriters -malloc_debug -malloc_dump -memory_info +==26063== Parent PID: 24057 +==26063== +==26063== +==26063== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26063== Open file descriptor 12: +==26063== at 0xF84307D: pipe (pipe.c:29) +==26063== by 0x196B407D: ??? +==26063== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26063== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26063== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26063== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26063== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26063== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26063== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26063== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26063== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26063== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26063== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26063== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==26063== +==26063== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26063== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26063== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26063== by 0xF144822: ??? +==26063== by 0xF14496F: ??? +==26063== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26063== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26063== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26063== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26063== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26063== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26063== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26063== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26063== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26063== by 0x137BD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26063== by 0x130FA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26063== by 0x133996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26063== by 0x133891: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26063== by 0x133EA5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26063== by 0x12F7A5: main (TestCellPopulationCountWriters.cpp:18) +==26063== +==26063== Open file descriptor 158: +==26063== +==26063== +==26063== Open file descriptor 155: +==26063== +==26063== +==26063== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationCountWriters_valgrind.txt +==26063== +==26063== +==26063== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26063== +==26063== +==26063== +==26063== HEAP SUMMARY: +==26063== in use at exit: 618,370 bytes in 8,239 blocks +==26063== total heap usage: 57,820 allocs, 49,581 frees, 1,346,111,327 bytes allocated +==26063== +==26063== LEAK SUMMARY: +==26063== definitely lost: 0 bytes in 0 blocks +==26063== indirectly lost: 0 bytes in 0 blocks +==26063== possibly lost: 0 bytes in 0 blocks +==26063== still reachable: 56 bytes in 3 blocks +==26063== suppressed: 618,314 bytes in 8,236 blocks +==26063== Reachable blocks (those to which a pointer was found) are not shown. +==26063== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26063== +==26063== For lists of detected and suppressed errors, rerun with: -s +==26063== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellPopulationEventWriters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellPopulationEventWriters_valgrind.txt new file mode 100644 index 000000000..6e20e765e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellPopulationEventWriters_valgrind.txt @@ -0,0 +1,73 @@ +==26085== Memcheck, a memory error detector +==26085== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26085== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26085== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationEventWriters -malloc_debug -malloc_dump -memory_info +==26085== Parent PID: 24057 +==26085== +==26085== +==26085== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26085== Open file descriptor 12: +==26085== at 0xF84307D: pipe (pipe.c:29) +==26085== by 0x196B407D: ??? +==26085== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26085== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26085== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26085== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26085== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26085== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26085== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26085== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26085== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26085== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26085== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26085== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==26085== +==26085== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26085== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26085== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26085== by 0xF144822: ??? +==26085== by 0xF14496F: ??? +==26085== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26085== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26085== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26085== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26085== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26085== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26085== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26085== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26085== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26085== by 0x13559C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26085== by 0x12E53D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26085== by 0x130F8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26085== by 0x130E2C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26085== by 0x1314C3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26085== by 0x12C965: main (TestCellPopulationEventWriters.cpp:19) +==26085== +==26085== Open file descriptor 158: +==26085== +==26085== +==26085== Open file descriptor 155: +==26085== +==26085== +==26085== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationEventWriters_valgrind.txt +==26085== +==26085== +==26085== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26085== +==26085== +==26085== +==26085== HEAP SUMMARY: +==26085== in use at exit: 618,370 bytes in 8,239 blocks +==26085== total heap usage: 69,869 allocs, 61,630 frees, 1,350,933,040 bytes allocated +==26085== +==26085== LEAK SUMMARY: +==26085== definitely lost: 0 bytes in 0 blocks +==26085== indirectly lost: 0 bytes in 0 blocks +==26085== possibly lost: 0 bytes in 0 blocks +==26085== still reachable: 56 bytes in 3 blocks +==26085== suppressed: 618,314 bytes in 8,236 blocks +==26085== Reachable blocks (those to which a pointer was found) are not shown. +==26085== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26085== +==26085== For lists of detected and suppressed errors, rerun with: -s +==26085== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2025-02-12_21-17-58/TestCellPopulationWriters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellPopulationWriters_valgrind.txt new file mode 100644 index 000000000..a74c7a60d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellPopulationWriters_valgrind.txt @@ -0,0 +1,73 @@ +==26086== Memcheck, a memory error detector +==26086== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26086== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26086== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationWriters -malloc_debug -malloc_dump -memory_info +==26086== Parent PID: 24057 +==26086== +==26086== +==26086== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26086== Open file descriptor 12: +==26086== at 0xF84307D: pipe (pipe.c:29) +==26086== by 0x196B407D: ??? +==26086== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26086== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26086== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26086== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26086== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26086== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26086== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26086== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26086== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26086== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26086== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26086== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==26086== +==26086== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26086== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26086== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26086== by 0xF144822: ??? +==26086== by 0xF14496F: ??? +==26086== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26086== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26086== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26086== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26086== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26086== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26086== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26086== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26086== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26086== by 0x146C30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26086== by 0x13F5FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26086== by 0x14252E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26086== by 0x1423CE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26086== by 0x142A65: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26086== by 0x13DA25: main (TestCellPopulationWriters.cpp:19) +==26086== +==26086== Open file descriptor 158: +==26086== +==26086== +==26086== Open file descriptor 155: +==26086== +==26086== +==26086== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPopulationWriters_valgrind.txt +==26086== +==26086== +==26086== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26086== +==26086== +==26086== +==26086== HEAP SUMMARY: +==26086== in use at exit: 618,370 bytes in 8,239 blocks +==26086== total heap usage: 157,886 allocs, 149,647 frees, 1,399,033,431 bytes allocated +==26086== +==26086== LEAK SUMMARY: +==26086== definitely lost: 0 bytes in 0 blocks +==26086== indirectly lost: 0 bytes in 0 blocks +==26086== possibly lost: 0 bytes in 0 blocks +==26086== still reachable: 56 bytes in 3 blocks +==26086== suppressed: 618,314 bytes in 8,236 blocks +==26086== Reachable blocks (those to which a pointer was found) are not shown. +==26086== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26086== +==26086== For lists of detected and suppressed errors, rerun with: -s +==26086== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellProliferativeTypes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellProliferativeTypes_valgrind.txt new file mode 100644 index 000000000..25ac31a04 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellProliferativeTypes_valgrind.txt @@ -0,0 +1,73 @@ +==25490== Memcheck, a memory error detector +==25490== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25490== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25490== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellProliferativeTypes -malloc_debug -malloc_dump -memory_info +==25490== Parent PID: 24057 +==25490== +==25490== +==25490== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25490== Open file descriptor 12: +==25490== at 0xED5007D: pipe (pipe.c:29) +==25490== by 0x196B507D: ??? +==25490== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25490== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25490== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25490== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25490== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25490== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25490== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25490== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25490== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25490== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25490== +==25490== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25490== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25490== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25490== by 0xD4DF822: ??? +==25490== by 0xD4DF96F: ??? +==25490== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25490== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25490== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25490== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25490== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25490== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25490== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25490== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25490== by 0x12CF1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25490== by 0x127E29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25490== by 0x12A848: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25490== by 0x12A6E8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25490== by 0x12AD7F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25490== by 0x126245: main (TestCellProliferativeTypes.cpp:19) +==25490== +==25490== Open file descriptor 158: +==25490== +==25490== +==25490== Open file descriptor 155: +==25490== +==25490== +==25490== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProliferativeTypes_valgrind.txt +==25490== +==25490== +==25490== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25490== +==25490== +==25490== +==25490== HEAP SUMMARY: +==25490== in use at exit: 618,370 bytes in 8,239 blocks +==25490== total heap usage: 53,387 allocs, 45,148 frees, 1,339,006,620 bytes allocated +==25490== +==25490== LEAK SUMMARY: +==25490== definitely lost: 0 bytes in 0 blocks +==25490== indirectly lost: 0 bytes in 0 blocks +==25490== possibly lost: 0 bytes in 0 blocks +==25490== still reachable: 56 bytes in 3 blocks +==25490== suppressed: 618,314 bytes in 8,236 blocks +==25490== Reachable blocks (those to which a pointer was found) are not shown. +==25490== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25490== +==25490== For lists of detected and suppressed errors, rerun with: -s +==25490== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellProperties_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellProperties_valgrind.txt new file mode 100644 index 000000000..ac98c92c9 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellProperties_valgrind.txt @@ -0,0 +1,73 @@ +==43893== Memcheck, a memory error detector +==43893== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43893== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43893== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCellProperties -malloc_debug -malloc_dump -memory_info +==43893== Parent PID: 24057 +==43893== +==43893== +==43893== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43893== Open file descriptor 12: +==43893== at 0x882407D: pipe (pipe.c:29) +==43893== by 0x1432F07D: ??? +==43893== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43893== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43893== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43893== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==43893== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43893== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43893== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43893== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43893== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43893== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43893== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43893== by 0x115CD5: main (TestCellProperties.cpp:19) +==43893== +==43893== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43893== at 0x8828A1C: __open_nocancel (open64_nocancel.c:39) +==43893== by 0x87ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43893== by 0x8492822: ??? +==43893== by 0x849296F: ??? +==43893== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43893== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43893== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43893== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43893== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43893== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43893== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==43893== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43893== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43893== by 0x11C95A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43893== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43893== by 0x11A450: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43893== by 0x11A2F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43893== by 0x11A987: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43893== by 0x115CD5: main (TestCellProperties.cpp:19) +==43893== +==43893== Open file descriptor 158: +==43893== +==43893== +==43893== Open file descriptor 155: +==43893== +==43893== +==43893== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellProperties_valgrind.txt +==43893== +==43893== +==43893== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43893== +==43893== +==43893== +==43893== HEAP SUMMARY: +==43893== in use at exit: 618,281 bytes in 8,234 blocks +==43893== total heap usage: 1,086,636 allocs, 1,078,402 frees, 1,460,646,928 bytes allocated +==43893== +==43893== LEAK SUMMARY: +==43893== definitely lost: 0 bytes in 0 blocks +==43893== indirectly lost: 0 bytes in 0 blocks +==43893== possibly lost: 0 bytes in 0 blocks +==43893== still reachable: 24 bytes in 2 blocks +==43893== suppressed: 618,257 bytes in 8,232 blocks +==43893== Reachable blocks (those to which a pointer was found) are not shown. +==43893== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43893== +==43893== For lists of detected and suppressed errors, rerun with: -s +==43893== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCellPropertyCollection_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellPropertyCollection_valgrind.txt new file mode 100644 index 000000000..e94654e5b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellPropertyCollection_valgrind.txt @@ -0,0 +1,73 @@ +==25491== Memcheck, a memory error detector +==25491== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25491== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25491== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyCollection -malloc_debug -malloc_dump -memory_info +==25491== Parent PID: 24057 +==25491== +==25491== +==25491== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25491== Open file descriptor 12: +==25491== at 0xED5007D: pipe (pipe.c:29) +==25491== by 0x196B507D: ??? +==25491== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25491== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25491== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25491== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25491== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25491== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25491== by 0x1536A7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25491== by 0x14E129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25491== by 0x150D0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25491== by 0x150BAE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25491== by 0x151245: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25491== by 0x14C545: main (TestCellPropertyCollection.cpp:19) +==25491== +==25491== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25491== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25491== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25491== by 0xD4DF822: ??? +==25491== by 0xD4DF96F: ??? +==25491== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25491== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25491== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25491== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25491== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25491== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25491== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25491== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25491== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25491== by 0x1536A7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25491== by 0x14E129: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25491== by 0x150D0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25491== by 0x150BAE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25491== by 0x151245: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25491== by 0x14C545: main (TestCellPropertyCollection.cpp:19) +==25491== +==25491== Open file descriptor 158: +==25491== +==25491== +==25491== Open file descriptor 155: +==25491== +==25491== +==25491== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyCollection_valgrind.txt +==25491== +==25491== +==25491== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25491== +==25491== +==25491== +==25491== HEAP SUMMARY: +==25491== in use at exit: 618,370 bytes in 8,239 blocks +==25491== total heap usage: 53,260 allocs, 45,021 frees, 1,338,931,863 bytes allocated +==25491== +==25491== LEAK SUMMARY: +==25491== definitely lost: 0 bytes in 0 blocks +==25491== indirectly lost: 0 bytes in 0 blocks +==25491== possibly lost: 0 bytes in 0 blocks +==25491== still reachable: 56 bytes in 3 blocks +==25491== suppressed: 618,314 bytes in 8,236 blocks +==25491== Reachable blocks (those to which a pointer was found) are not shown. +==25491== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25491== +==25491== For lists of detected and suppressed errors, rerun with: -s +==25491== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellPropertyRegistry_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellPropertyRegistry_valgrind.txt new file mode 100644 index 000000000..1e9348cb8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellPropertyRegistry_valgrind.txt @@ -0,0 +1,73 @@ +==25498== Memcheck, a memory error detector +==25498== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25498== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25498== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPropertyRegistry -malloc_debug -malloc_dump -memory_info +==25498== Parent PID: 24057 +==25498== +==25498== +==25498== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25498== Open file descriptor 12: +==25498== at 0xED5007D: pipe (pipe.c:29) +==25498== by 0x196B507D: ??? +==25498== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25498== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25498== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25498== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25498== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25498== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25498== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25498== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25498== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25498== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25498== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25498== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25498== +==25498== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25498== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25498== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25498== by 0xD4DF822: ??? +==25498== by 0xD4DF96F: ??? +==25498== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25498== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25498== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25498== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25498== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25498== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25498== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25498== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25498== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25498== by 0x15B69D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25498== by 0x156089: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25498== by 0x158D4C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25498== by 0x158BEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25498== by 0x159283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25498== by 0x1544A5: main (TestCellPropertyRegistry.cpp:19) +==25498== +==25498== Open file descriptor 158: +==25498== +==25498== +==25498== Open file descriptor 155: +==25498== +==25498== +==25498== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellPropertyRegistry_valgrind.txt +==25498== +==25498== +==25498== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25498== +==25498== +==25498== +==25498== HEAP SUMMARY: +==25498== in use at exit: 618,370 bytes in 8,239 blocks +==25498== total heap usage: 53,291 allocs, 45,052 frees, 1,338,959,701 bytes allocated +==25498== +==25498== LEAK SUMMARY: +==25498== definitely lost: 0 bytes in 0 blocks +==25498== indirectly lost: 0 bytes in 0 blocks +==25498== possibly lost: 0 bytes in 0 blocks +==25498== still reachable: 56 bytes in 3 blocks +==25498== suppressed: 618,314 bytes in 8,236 blocks +==25498== Reachable blocks (those to which a pointer was found) are not shown. +==25498== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25498== +==25498== For lists of detected and suppressed errors, rerun with: -s +==25498== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellSrn_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellSrn_valgrind.txt new file mode 100644 index 000000000..a010732e5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25441== Memcheck, a memory error detector +==25441== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25441== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25441== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellSrn -malloc_debug -malloc_dump -memory_info +==25441== Parent PID: 24057 +==25441== +==25441== +==25441== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25441== Open file descriptor 12: +==25441== at 0xED0E07D: pipe (pipe.c:29) +==25441== by 0x196B507D: ??? +==25441== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25441== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25441== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25441== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25441== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25441== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25441== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25441== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25441== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25441== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25441== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25441== by 0x113935: main (TestCellSrn.cpp:18) +==25441== +==25441== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25441== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25441== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25441== by 0xE85F822: ??? +==25441== by 0xE85F96F: ??? +==25441== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25441== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25441== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25441== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25441== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25441== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25441== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25441== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25441== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25441== by 0x119821: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25441== by 0x115133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25441== by 0x117438: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25441== by 0x117333: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25441== by 0x117947: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25441== by 0x113935: main (TestCellSrn.cpp:18) +==25441== +==25441== Open file descriptor 158: +==25441== +==25441== +==25441== Open file descriptor 155: +==25441== +==25441== +==25441== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellSrn_valgrind.txt +==25441== +==25441== +==25441== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25441== +==25441== +==25441== +==25441== HEAP SUMMARY: +==25441== in use at exit: 618,434 bytes in 8,240 blocks +==25441== total heap usage: 63,350 allocs, 55,110 frees, 1,339,389,510 bytes allocated +==25441== +==25441== LEAK SUMMARY: +==25441== definitely lost: 0 bytes in 0 blocks +==25441== indirectly lost: 0 bytes in 0 blocks +==25441== possibly lost: 0 bytes in 0 blocks +==25441== still reachable: 120 bytes in 4 blocks +==25441== suppressed: 618,314 bytes in 8,236 blocks +==25441== Reachable blocks (those to which a pointer was found) are not shown. +==25441== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25441== +==25441== For lists of detected and suppressed errors, rerun with: -s +==25441== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellWriters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellWriters_valgrind.txt new file mode 100644 index 000000000..b494ce169 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellWriters_valgrind.txt @@ -0,0 +1,73 @@ +==26108== Memcheck, a memory error detector +==26108== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26108== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26108== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellWriters -malloc_debug -malloc_dump -memory_info +==26108== Parent PID: 24057 +==26108== +==26108== +==26108== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26108== Open file descriptor 12: +==26108== at 0xFB1607D: pipe (pipe.c:29) +==26108== by 0x196B507D: ??? +==26108== by 0x14CBB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26108== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26108== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26108== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26108== by 0xF3D51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26108== by 0xF3D5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26108== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26108== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26108== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26108== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26108== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26108== by 0x13B285: main (TestCellWriters.cpp:19) +==26108== +==26108== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26108== at 0xFB1AA1C: __open_nocancel (open64_nocancel.c:39) +==26108== by 0xFA9EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26108== by 0xF415822: ??? +==26108== by 0xF41596F: ??? +==26108== by 0x14D606DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26108== by 0x14D60938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26108== by 0x14D16922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26108== by 0x14CBB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26108== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26108== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26108== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26108== by 0xF3D51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26108== by 0xF3D5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26108== by 0x144A2A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26108== by 0x13CE5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26108== by 0x14024C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26108== by 0x1400EC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26108== by 0x140783: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26108== by 0x13B285: main (TestCellWriters.cpp:19) +==26108== +==26108== Open file descriptor 158: +==26108== +==26108== +==26108== Open file descriptor 155: +==26108== +==26108== +==26108== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellWriters_valgrind.txt +==26108== +==26108== +==26108== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26108== +==26108== +==26108== +==26108== HEAP SUMMARY: +==26108== in use at exit: 618,370 bytes in 8,239 blocks +==26108== total heap usage: 69,808 allocs, 61,569 frees, 1,342,420,422 bytes allocated +==26108== +==26108== LEAK SUMMARY: +==26108== definitely lost: 0 bytes in 0 blocks +==26108== indirectly lost: 0 bytes in 0 blocks +==26108== possibly lost: 0 bytes in 0 blocks +==26108== still reachable: 56 bytes in 3 blocks +==26108== suppressed: 618,314 bytes in 8,236 blocks +==26108== Reachable blocks (those to which a pointer was found) are not shown. +==26108== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26108== +==26108== For lists of detected and suppressed errors, rerun with: -s +==26108== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 40) diff --git a/log-files/2025-02-12_21-17-58/TestCell_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCell_valgrind.txt new file mode 100644 index 000000000..ebb3e249d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCell_valgrind.txt @@ -0,0 +1,73 @@ +==25437== Memcheck, a memory error detector +==25437== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25437== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25437== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info +==25437== Parent PID: 24057 +==25437== +==25437== +==25437== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25437== Open file descriptor 12: +==25437== at 0xED0E07D: pipe (pipe.c:29) +==25437== by 0x196B507D: ??? +==25437== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25437== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25437== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25437== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25437== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25437== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25437== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25437== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25437== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25437== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25437== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25437== by 0x1222F5: main (TestCell.cpp:19) +==25437== +==25437== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25437== at 0xED12A1C: __open_nocancel (open64_nocancel.c:39) +==25437== by 0xEC96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25437== by 0xE85F822: ??? +==25437== by 0xE85F96F: ??? +==25437== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25437== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25437== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25437== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25437== by 0xE95D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25437== by 0xE8F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25437== by 0xD5CAD38: PetscInitialize (pinit.c:924) +==25437== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25437== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25437== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25437== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25437== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25437== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25437== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25437== by 0x1222F5: main (TestCell.cpp:19) +==25437== +==25437== Open file descriptor 158: +==25437== +==25437== +==25437== Open file descriptor 155: +==25437== +==25437== +==25437== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt +==25437== +==25437== +==25437== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25437== +==25437== +==25437== +==25437== HEAP SUMMARY: +==25437== in use at exit: 618,425 bytes in 8,236 blocks +==25437== total heap usage: 5,183,521 allocs, 5,175,285 frees, 1,819,192,034 bytes allocated +==25437== +==25437== LEAK SUMMARY: +==25437== definitely lost: 0 bytes in 0 blocks +==25437== indirectly lost: 0 bytes in 0 blocks +==25437== possibly lost: 0 bytes in 0 blocks +==25437== still reachable: 184 bytes in 4 blocks +==25437== suppressed: 618,241 bytes in 8,232 blocks +==25437== Reachable blocks (those to which a pointer was found) are not shown. +==25437== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25437== +==25437== For lists of detected and suppressed errors, rerun with: -s +==25437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCellsGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellsGenerator_valgrind.txt new file mode 100644 index 000000000..349a65e52 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25514== Memcheck, a memory error detector +==25514== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25514== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25514== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellsGenerator -malloc_debug -malloc_dump -memory_info +==25514== Parent PID: 24057 +==25514== +==25514== +==25514== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25514== Open file descriptor 12: +==25514== at 0xF80107D: pipe (pipe.c:29) +==25514== by 0x196B407D: ??? +==25514== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25514== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25514== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25514== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25514== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25514== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25514== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25514== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25514== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25514== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25514== +==25514== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25514== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==25514== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25514== by 0xF144822: ??? +==25514== by 0xF14496F: ??? +==25514== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25514== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25514== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25514== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25514== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25514== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25514== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25514== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25514== by 0x1248EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25514== by 0x11F90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25514== by 0x122428: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25514== by 0x1222C8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25514== by 0x12295F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25514== by 0x11DD35: main (TestCellsGenerator.cpp:19) +==25514== +==25514== Open file descriptor 158: +==25514== +==25514== +==25514== Open file descriptor 155: +==25514== +==25514== +==25514== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellsGenerator_valgrind.txt +==25514== +==25514== +==25514== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25514== +==25514== +==25514== +==25514== HEAP SUMMARY: +==25514== in use at exit: 618,434 bytes in 8,240 blocks +==25514== total heap usage: 69,420 allocs, 61,180 frees, 1,340,700,406 bytes allocated +==25514== +==25514== LEAK SUMMARY: +==25514== definitely lost: 0 bytes in 0 blocks +==25514== indirectly lost: 0 bytes in 0 blocks +==25514== possibly lost: 0 bytes in 0 blocks +==25514== still reachable: 120 bytes in 4 blocks +==25514== suppressed: 618,314 bytes in 8,236 blocks +==25514== Reachable blocks (those to which a pointer was found) are not shown. +==25514== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25514== +==25514== For lists of detected and suppressed errors, rerun with: -s +==25514== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCellwiseDataGradient_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCellwiseDataGradient_valgrind.txt new file mode 100644 index 000000000..a81bf8df7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCellwiseDataGradient_valgrind.txt @@ -0,0 +1,73 @@ +==26087== Memcheck, a memory error detector +==26087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26087== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellwiseDataGradient -malloc_debug -malloc_dump -memory_info +==26087== Parent PID: 24057 +==26087== +==26087== +==26087== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26087== Open file descriptor 12: +==26087== at 0xF80107D: pipe (pipe.c:29) +==26087== by 0x196B407D: ??? +==26087== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26087== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26087== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26087== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26087== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26087== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26087== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26087== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26087== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26087== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26087== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26087== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==26087== +==26087== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26087== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==26087== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26087== by 0xF144822: ??? +==26087== by 0xF14496F: ??? +==26087== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26087== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26087== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26087== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26087== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26087== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26087== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26087== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26087== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26087== by 0x11DD52: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26087== by 0x119493: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26087== by 0x11B86C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26087== by 0x11B767: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26087== by 0x11BD7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26087== by 0x117C95: main (TestCellwiseDataGradient.cpp:18) +==26087== +==26087== Open file descriptor 158: +==26087== +==26087== +==26087== Open file descriptor 155: +==26087== +==26087== +==26087== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellwiseDataGradient_valgrind.txt +==26087== +==26087== +==26087== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26087== +==26087== +==26087== +==26087== HEAP SUMMARY: +==26087== in use at exit: 618,370 bytes in 8,239 blocks +==26087== total heap usage: 418,859 allocs, 410,620 frees, 1,353,658,767 bytes allocated +==26087== +==26087== LEAK SUMMARY: +==26087== definitely lost: 0 bytes in 0 blocks +==26087== indirectly lost: 0 bytes in 0 blocks +==26087== possibly lost: 0 bytes in 0 blocks +==26087== still reachable: 56 bytes in 3 blocks +==26087== suppressed: 618,314 bytes in 8,236 blocks +==26087== Reachable blocks (those to which a pointer was found) are not shown. +==26087== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26087== +==26087== For lists of detected and suppressed errors, rerun with: -s +==26087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCentreBasedDivisionRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCentreBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..83a429aec --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCentreBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26114== Memcheck, a memory error detector +==26114== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26114== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26114== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCentreBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26114== Parent PID: 24057 +==26114== +==26114== +==26114== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26114== Open file descriptor 12: +==26114== at 0x10DE107D: pipe (pipe.c:29) +==26114== by 0x196B407D: ??? +==26114== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26114== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0xF292D38: PetscInitialize (pinit.c:924) +==26114== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26114== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26114== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26114== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26114== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26114== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26114== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26114== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==26114== +==26114== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26114== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26114== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26114== by 0xF144822: ??? +==26114== by 0xF14496F: ??? +==26114== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26114== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26114== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26114== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26114== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26114== by 0xF292D38: PetscInitialize (pinit.c:924) +==26114== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26114== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26114== by 0x140B79: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26114== by 0x13BAA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26114== by 0x13E124: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26114== by 0x13E020: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26114== by 0x13E633: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26114== by 0x13A2A5: main (TestCentreBasedDivisionRules.cpp:18) +==26114== +==26114== Open file descriptor 158: +==26114== +==26114== +==26114== Open file descriptor 155: +==26114== +==26114== +==26114== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCentreBasedDivisionRules_valgrind.txt +==26114== +==26114== +==26114== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26114== +==26114== +==26114== +==26114== HEAP SUMMARY: +==26114== in use at exit: 618,370 bytes in 8,239 blocks +==26114== total heap usage: 58,551 allocs, 50,312 frees, 1,339,872,990 bytes allocated +==26114== +==26114== LEAK SUMMARY: +==26114== definitely lost: 0 bytes in 0 blocks +==26114== indirectly lost: 0 bytes in 0 blocks +==26114== possibly lost: 0 bytes in 0 blocks +==26114== still reachable: 56 bytes in 3 blocks +==26114== suppressed: 618,314 bytes in 8,236 blocks +==26114== Reachable blocks (those to which a pointer was found) are not shown. +==26114== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26114== +==26114== For lists of detected and suppressed errors, rerun with: -s +==26114== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestChasteBuildInfo_valgrind.txt b/log-files/2025-02-12_21-17-58/TestChasteBuildInfo_valgrind.txt new file mode 100644 index 000000000..7021a19db --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestChasteBuildInfo_valgrind.txt @@ -0,0 +1,73 @@ +==24088== Memcheck, a memory error detector +==24088== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24088== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24088== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info +==24088== Parent PID: 24057 +==24088== +==24088== +==24088== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24088== Open file descriptor 12: +==24088== at 0x616907D: pipe (pipe.c:29) +==24088== by 0xAEA507D: ??? +==24088== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24088== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24088== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24088== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24088== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24088== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24088== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24088== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24088== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24088== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==24088== +==24088== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24088== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24088== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24088== by 0x5CB8822: ??? +==24088== by 0x5CB896F: ??? +==24088== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24088== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24088== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24088== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24088== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24088== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24088== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24088== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24088== by 0x111D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24088== by 0x10DC93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24088== by 0x10FE44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24088== by 0x10FD40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24088== by 0x110353: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24088== by 0x10C495: main (TestChasteBuildInfo.cpp:18) +==24088== +==24088== Open file descriptor 158: +==24088== +==24088== +==24088== Open file descriptor 155: +==24088== +==24088== +==24088== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteBuildInfo_valgrind.txt +==24088== +==24088== +==24088== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24088== +==24088== +==24088== +==24088== HEAP SUMMARY: +==24088== in use at exit: 617,874 bytes in 8,238 blocks +==24088== total heap usage: 44,924 allocs, 36,686 frees, 1,338,165,656 bytes allocated +==24088== +==24088== LEAK SUMMARY: +==24088== definitely lost: 0 bytes in 0 blocks +==24088== indirectly lost: 0 bytes in 0 blocks +==24088== possibly lost: 0 bytes in 0 blocks +==24088== still reachable: 24 bytes in 2 blocks +==24088== suppressed: 617,850 bytes in 8,236 blocks +==24088== Reachable blocks (those to which a pointer was found) are not shown. +==24088== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24088== +==24088== For lists of detected and suppressed errors, rerun with: -s +==24088== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestChastePoint_valgrind.txt b/log-files/2025-02-12_21-17-58/TestChastePoint_valgrind.txt new file mode 100644 index 000000000..757ceeeee --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestChastePoint_valgrind.txt @@ -0,0 +1,73 @@ +==24434== Memcheck, a memory error detector +==24434== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24434== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24434== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info +==24434== Parent PID: 24057 +==24434== +==24434== +==24434== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24434== Open file descriptor 12: +==24434== at 0x7E0E07D: pipe (pipe.c:29) +==24434== by 0x100CC07D: ??? +==24434== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24434== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24434== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24434== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24434== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24434== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24434== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24434== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24434== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24434== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24434== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24434== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24434== +==24434== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24434== at 0x7E12A1C: __open_nocancel (open64_nocancel.c:39) +==24434== by 0x7D96BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24434== by 0x659D822: ??? +==24434== by 0x659D96F: ??? +==24434== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24434== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24434== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24434== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24434== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24434== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24434== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24434== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24434== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24434== by 0x1434C7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24434== by 0x13DFC9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24434== by 0x140D84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24434== by 0x140C24: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24434== by 0x1412BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24434== by 0x13C3E5: main (TestChastePoint.cpp:19) +==24434== +==24434== Open file descriptor 158: +==24434== +==24434== +==24434== Open file descriptor 155: +==24434== +==24434== +==24434== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChastePoint_valgrind.txt +==24434== +==24434== +==24434== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24434== +==24434== +==24434== +==24434== HEAP SUMMARY: +==24434== in use at exit: 618,242 bytes in 8,238 blocks +==24434== total heap usage: 47,413 allocs, 39,175 frees, 1,338,409,027 bytes allocated +==24434== +==24434== LEAK SUMMARY: +==24434== definitely lost: 0 bytes in 0 blocks +==24434== indirectly lost: 0 bytes in 0 blocks +==24434== possibly lost: 0 bytes in 0 blocks +==24434== still reachable: 24 bytes in 2 blocks +==24434== suppressed: 618,218 bytes in 8,236 blocks +==24434== Reachable blocks (those to which a pointer was found) are not shown. +==24434== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24434== +==24434== For lists of detected and suppressed errors, rerun with: -s +==24434== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestChasteRegions_valgrind.txt b/log-files/2025-02-12_21-17-58/TestChasteRegions_valgrind.txt new file mode 100644 index 000000000..ce0c1946a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestChasteRegions_valgrind.txt @@ -0,0 +1,73 @@ +==24435== Memcheck, a memory error detector +==24435== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24435== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24435== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChasteRegions -malloc_debug -malloc_dump -memory_info +==24435== Parent PID: 24057 +==24435== +==24435== +==24435== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24435== Open file descriptor 12: +==24435== at 0x6A4007D: pipe (pipe.c:29) +==24435== by 0x100CC07D: ??? +==24435== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24435== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24435== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24435== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24435== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24435== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24435== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24435== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24435== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24435== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24435== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24435== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24435== +==24435== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24435== at 0x6A44A1C: __open_nocancel (open64_nocancel.c:39) +==24435== by 0x69C8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24435== by 0x659D822: ??? +==24435== by 0x659D96F: ??? +==24435== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24435== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24435== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24435== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24435== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24435== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24435== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24435== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24435== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24435== by 0x127EAE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24435== by 0x122DBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24435== by 0x12589A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24435== by 0x12573A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24435== by 0x125DD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24435== by 0x1211E5: main (TestChasteRegions.cpp:19) +==24435== +==24435== Open file descriptor 158: +==24435== +==24435== +==24435== Open file descriptor 155: +==24435== +==24435== +==24435== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChasteRegions_valgrind.txt +==24435== +==24435== +==24435== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24435== +==24435== +==24435== +==24435== HEAP SUMMARY: +==24435== in use at exit: 618,242 bytes in 8,238 blocks +==24435== total heap usage: 47,509 allocs, 39,271 frees, 1,338,416,492 bytes allocated +==24435== +==24435== LEAK SUMMARY: +==24435== definitely lost: 0 bytes in 0 blocks +==24435== indirectly lost: 0 bytes in 0 blocks +==24435== possibly lost: 0 bytes in 0 blocks +==24435== still reachable: 24 bytes in 2 blocks +==24435== suppressed: 618,218 bytes in 8,236 blocks +==24435== Reachable blocks (those to which a pointer was found) are not shown. +==24435== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24435== +==24435== For lists of detected and suppressed errors, rerun with: -s +==24435== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestChebyshevIteration_valgrind.txt b/log-files/2025-02-12_21-17-58/TestChebyshevIteration_valgrind.txt new file mode 100644 index 000000000..c59495818 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestChebyshevIteration_valgrind.txt @@ -0,0 +1,73 @@ +==24360== Memcheck, a memory error detector +==24360== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24360== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24360== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info +==24360== Parent PID: 24057 +==24360== +==24360== +==24360== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24360== Open file descriptor 12: +==24360== at 0x60C107D: pipe (pipe.c:29) +==24360== by 0xAF3907D: ??? +==24360== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24360== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24360== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24360== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24360== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24360== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24360== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24360== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24360== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24360== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24360== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24360== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24360== +==24360== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24360== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24360== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24360== by 0x5D47822: ??? +==24360== by 0x5D4796F: ??? +==24360== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24360== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24360== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24360== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24360== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24360== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24360== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24360== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24360== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24360== by 0x115156: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24360== by 0x11068D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24360== by 0x112F8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24360== by 0x112E2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24360== by 0x1134C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24360== by 0x10EAB5: main (TestChebyshevIteration.cpp:19) +==24360== +==24360== Open file descriptor 158: +==24360== +==24360== +==24360== Open file descriptor 155: +==24360== +==24360== +==24360== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestChebyshevIteration_valgrind.txt +==24360== +==24360== +==24360== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24360== +==24360== +==24360== +==24360== HEAP SUMMARY: +==24360== in use at exit: 617,890 bytes in 8,238 blocks +==24360== total heap usage: 49,163 allocs, 40,925 frees, 1,357,740,343 bytes allocated +==24360== +==24360== LEAK SUMMARY: +==24360== definitely lost: 0 bytes in 0 blocks +==24360== indirectly lost: 0 bytes in 0 blocks +==24360== possibly lost: 0 bytes in 0 blocks +==24360== still reachable: 24 bytes in 2 blocks +==24360== suppressed: 617,866 bytes in 8,236 blocks +==24360== Reachable blocks (those to which a pointer was found) are not shown. +==24360== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24360== +==24360== For lists of detected and suppressed errors, rerun with: -s +==24360== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCheckpointing_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCheckpointing_valgrind.txt new file mode 100644 index 000000000..e928fc76d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCheckpointing_valgrind.txt @@ -0,0 +1,73 @@ +==44034== Memcheck, a memory error detector +==44034== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44034== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44034== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info +==44034== Parent PID: 24057 +==44034== +==44034== +==44034== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44034== Open file descriptor 12: +==44034== at 0xA7CE07D: pipe (pipe.c:29) +==44034== by 0x1432F07D: ??? +==44034== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44034== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44034== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44034== by 0xAB57D38: PetscInitialize (pinit.c:924) +==44034== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44034== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44034== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44034== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44034== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44034== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44034== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44034== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==44034== +==44034== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44034== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39) +==44034== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44034== by 0xA0F5822: ??? +==44034== by 0xA0F596F: ??? +==44034== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44034== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44034== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44034== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44034== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44034== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44034== by 0xAB57D38: PetscInitialize (pinit.c:924) +==44034== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44034== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44034== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44034== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44034== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44034== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44034== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44034== by 0x11CCF5: main (TestCheckpointing.cpp:18) +==44034== +==44034== Open file descriptor 158: +==44034== +==44034== +==44034== Open file descriptor 155: +==44034== +==44034== +==44034== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt +==44034== +==44034== +==44034== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44034== +==44034== +==44034== +==44034== HEAP SUMMARY: +==44034== in use at exit: 618,761 bytes in 8,244 blocks +==44034== total heap usage: 834,308 allocs, 826,064 frees, 1,443,021,893 bytes allocated +==44034== +==44034== LEAK SUMMARY: +==44034== definitely lost: 0 bytes in 0 blocks +==44034== indirectly lost: 0 bytes in 0 blocks +==44034== possibly lost: 0 bytes in 0 blocks +==44034== still reachable: 24 bytes in 2 blocks +==44034== suppressed: 618,737 bytes in 8,242 blocks +==44034== Reachable blocks (those to which a pointer was found) are not shown. +==44034== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44034== +==44034== For lists of detected and suppressed errors, rerun with: -s +==44034== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 60 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCitations_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCitations_valgrind.txt new file mode 100644 index 000000000..ab043404b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCitations_valgrind.txt @@ -0,0 +1,79 @@ +==24060== Memcheck, a memory error detector +==24060== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24060== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCitations -malloc_debug -malloc_dump -memory_info +==24060== Parent PID: 24057 +==24060== +==24060== +==24060== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24060== Open file descriptor 12: +==24060== at 0x4CB207D: pipe (pipe.c:29) +==24060== by 0xAEA507D: ??? +==24060== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24060== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24060== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24060== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24060== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==24060== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==24060== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24060== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24060== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24060== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24060== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24060== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24060== by 0x110C15: main (TestCitations.cpp:18) +==24060== +==24060== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24060== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24060== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24060== by 0x493A822: ??? +==24060== by 0x493A96F: ??? +==24060== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24060== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24060== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24060== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24060== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24060== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24060== by 0x11862B: TestCitations::TestChasteCitation() (TestCitations.hpp:72) +==24060== by 0x118ED8: TestDescription_TestCitations_TestChasteCitation::runTest() (TestCitations.cpp:30) +==24060== by 0x111C4A: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24060== by 0x114E74: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24060== by 0x114D59: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24060== by 0x114BFF: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24060== by 0x114AC1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24060== by 0x1150D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24060== by 0x110C15: main (TestCitations.cpp:18) +==24060== +==24060== Open file descriptor 158: +==24060== +==24060== +==24060== Open file descriptor 155: +==24060== +==24060== +==24060== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCitations_valgrind.txt +==24060== +==24060== +==24060== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24060== +==24060== +==24060== +==24060== HEAP SUMMARY: +==24060== in use at exit: 617,874 bytes in 8,238 blocks +==24060== total heap usage: 45,215 allocs, 36,977 frees, 1,338,329,105 bytes allocated +==24060== +==24060== LEAK SUMMARY: +==24060== definitely lost: 0 bytes in 0 blocks +==24060== indirectly lost: 0 bytes in 0 blocks +==24060== possibly lost: 0 bytes in 0 blocks +==24060== still reachable: 24 bytes in 2 blocks +==24060== suppressed: 617,850 bytes in 8,236 blocks +==24060== Reachable blocks (those to which a pointer was found) are not shown. +==24060== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24060== +==24060== For lists of detected and suppressed errors, rerun with: -s +==24060== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCodegenPresent_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCodegenPresent_valgrind.txt new file mode 100644 index 000000000..e2b0c9796 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCodegenPresent_valgrind.txt @@ -0,0 +1,73 @@ +==42951== Memcheck, a memory error detector +==42951== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42951== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42951== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegenPresent -malloc_debug -malloc_dump -memory_info +==42951== Parent PID: 24057 +==42951== +==42951== +==42951== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42951== Open file descriptor 12: +==42951== at 0x616907D: pipe (pipe.c:29) +==42951== by 0xAEA507D: ??? +==42951== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42951== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42951== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42951== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42951== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42951== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42951== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42951== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42951== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42951== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42951== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42951== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42951== +==42951== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42951== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==42951== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42951== by 0x5CB8822: ??? +==42951== by 0x5CB896F: ??? +==42951== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42951== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42951== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42951== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42951== by 0x5DB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42951== by 0x5D51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42951== by 0x4A23D38: PetscInitialize (pinit.c:924) +==42951== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42951== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42951== by 0x112059: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42951== by 0x10DE93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42951== by 0x110114: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42951== by 0x11000F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42951== by 0x110623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42951== by 0x10C695: main (TestCodegenPresent.cpp:18) +==42951== +==42951== Open file descriptor 158: +==42951== +==42951== +==42951== Open file descriptor 155: +==42951== +==42951== +==42951== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegenPresent_valgrind.txt +==42951== +==42951== +==42951== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42951== +==42951== +==42951== +==42951== HEAP SUMMARY: +==42951== in use at exit: 617,874 bytes in 8,238 blocks +==42951== total heap usage: 44,924 allocs, 36,686 frees, 1,338,162,042 bytes allocated +==42951== +==42951== LEAK SUMMARY: +==42951== definitely lost: 0 bytes in 0 blocks +==42951== indirectly lost: 0 bytes in 0 blocks +==42951== possibly lost: 0 bytes in 0 blocks +==42951== still reachable: 24 bytes in 2 blocks +==42951== suppressed: 617,850 bytes in 8,236 blocks +==42951== Reachable blocks (those to which a pointer was found) are not shown. +==42951== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42951== +==42951== For lists of detected and suppressed errors, rerun with: -s +==42951== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCodegen_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCodegen_valgrind.txt new file mode 100644 index 000000000..37413e369 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCodegen_valgrind.txt @@ -0,0 +1,73 @@ +==43056== Memcheck, a memory error detector +==43056== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43056== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43056== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info +==43056== Parent PID: 24057 +==43056== +==43056== +==43056== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43056== Open file descriptor 12: +==43056== at 0x9E0407D: pipe (pipe.c:29) +==43056== by 0x1432F07D: ??? +==43056== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43056== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43056== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43056== by 0x85E0D38: PetscInitialize (pinit.c:924) +==43056== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43056== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43056== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43056== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43056== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43056== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43056== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43056== by 0x12ADA5: main (TestCodegen.cpp:19) +==43056== +==43056== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43056== at 0x9E08A1C: __open_nocancel (open64_nocancel.c:39) +==43056== by 0x9D8CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43056== by 0x8492822: ??? +==43056== by 0x849296F: ??? +==43056== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43056== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43056== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43056== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43056== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43056== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43056== by 0x85E0D38: PetscInitialize (pinit.c:924) +==43056== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43056== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43056== by 0x135779: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43056== by 0x12FB0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43056== by 0x132D44: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43056== by 0x132BE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43056== by 0x13327B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43056== by 0x12ADA5: main (TestCodegen.cpp:19) +==43056== +==43056== Open file descriptor 158: +==43056== +==43056== +==43056== Open file descriptor 155: +==43056== +==43056== +==43056== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCodegen_valgrind.txt +==43056== +==43056== +==43056== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43056== +==43056== +==43056== +==43056== HEAP SUMMARY: +==43056== in use at exit: 623,624 bytes in 8,246 blocks +==43056== total heap usage: 941,057 allocs, 932,811 frees, 2,144,097,439 bytes allocated +==43056== +==43056== LEAK SUMMARY: +==43056== definitely lost: 0 bytes in 0 blocks +==43056== indirectly lost: 0 bytes in 0 blocks +==43056== possibly lost: 0 bytes in 0 blocks +==43056== still reachable: 5,367 bytes in 14 blocks +==43056== suppressed: 618,257 bytes in 8,232 blocks +==43056== Reachable blocks (those to which a pointer was found) are not shown. +==43056== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43056== +==43056== For lists of detected and suppressed errors, rerun with: -s +==43056== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestColumnDataReaderWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..20d3af790 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24309== Memcheck, a memory error detector +==24309== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24309== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24309== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24309== Parent PID: 24057 +==24309== +==24309== +==24309== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24309== Open file descriptor 12: +==24309== at 0x61DC07D: pipe (pipe.c:29) +==24309== by 0xAF1807D: ??? +==24309== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24309== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24309== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24309== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24309== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24309== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24309== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24309== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24309== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24309== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24309== +==24309== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24309== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24309== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24309== by 0x5D2B822: ??? +==24309== by 0x5D2B96F: ??? +==24309== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24309== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24309== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24309== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24309== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24309== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24309== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24309== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24309== by 0x11A4DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24309== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24309== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24309== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24309== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24309== by 0x113AF5: main (TestColumnDataReaderWriter.cpp:19) +==24309== +==24309== Open file descriptor 158: +==24309== +==24309== +==24309== Open file descriptor 155: +==24309== +==24309== +==24309== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestColumnDataReaderWriter_valgrind.txt +==24309== +==24309== +==24309== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24309== +==24309== +==24309== +==24309== HEAP SUMMARY: +==24309== in use at exit: 617,890 bytes in 8,238 blocks +==24309== total heap usage: 61,708 allocs, 53,470 frees, 1,341,174,426 bytes allocated +==24309== +==24309== LEAK SUMMARY: +==24309== definitely lost: 0 bytes in 0 blocks +==24309== indirectly lost: 0 bytes in 0 blocks +==24309== possibly lost: 0 bytes in 0 blocks +==24309== still reachable: 24 bytes in 2 blocks +==24309== suppressed: 617,866 bytes in 8,236 blocks +==24309== Reachable blocks (those to which a pointer was found) are not shown. +==24309== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24309== +==24309== For lists of detected and suppressed errors, rerun with: -s +==24309== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCombinedOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCombinedOdeSystem_valgrind.txt new file mode 100644 index 000000000..05250532b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCombinedOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25016== Memcheck, a memory error detector +==25016== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25016== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25016== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCombinedOdeSystem -malloc_debug -malloc_dump -memory_info +==25016== Parent PID: 24057 +==25016== +==25016== +==25016== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25016== Open file descriptor 12: +==25016== at 0x4F1007D: pipe (pipe.c:29) +==25016== by 0xB1E607D: ??? +==25016== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25016== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25016== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25016== by 0x5308D38: PetscInitialize (pinit.c:924) +==25016== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25016== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25016== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25016== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25016== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25016== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25016== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25016== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==25016== +==25016== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25016== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==25016== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25016== by 0x4B7C822: ??? +==25016== by 0x4B7C96F: ??? +==25016== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25016== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25016== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25016== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25016== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25016== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25016== by 0x5308D38: PetscInitialize (pinit.c:924) +==25016== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25016== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25016== by 0x11FE4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25016== by 0x11AEED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25016== by 0x11DACC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25016== by 0x11D9C7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25016== by 0x11DFDB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25016== by 0x118A75: main (TestCombinedOdeSystem.cpp:18) +==25016== +==25016== Open file descriptor 158: +==25016== +==25016== +==25016== Open file descriptor 155: +==25016== +==25016== +==25016== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCombinedOdeSystem_valgrind.txt +==25016== +==25016== +==25016== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25016== +==25016== +==25016== +==25016== HEAP SUMMARY: +==25016== in use at exit: 617,938 bytes in 8,238 blocks +==25016== total heap usage: 46,091 allocs, 37,853 frees, 1,338,259,325 bytes allocated +==25016== +==25016== LEAK SUMMARY: +==25016== definitely lost: 0 bytes in 0 blocks +==25016== indirectly lost: 0 bytes in 0 blocks +==25016== possibly lost: 0 bytes in 0 blocks +==25016== still reachable: 24 bytes in 2 blocks +==25016== suppressed: 617,914 bytes in 8,236 blocks +==25016== Reachable blocks (those to which a pointer was found) are not shown. +==25016== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25016== +==25016== For lists of detected and suppressed errors, rerun with: -s +==25016== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCommandLineArgumentsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCommandLineArgumentsTutorial_valgrind.txt new file mode 100644 index 000000000..f67347f3d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCommandLineArgumentsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==24306== Memcheck, a memory error detector +==24306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArgumentsTutorial -malloc_debug -malloc_dump -memory_info +==24306== Parent PID: 24057 +==24306== +==24306== +==24306== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24306== Open file descriptor 12: +==24306== at 0x4CB207D: pipe (pipe.c:29) +==24306== by 0xAEA507D: ??? +==24306== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24306== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24306== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24306== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24306== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24306== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24306== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24306== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24306== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24306== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24306== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24306== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24306== +==24306== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24306== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24306== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24306== by 0x493A822: ??? +==24306== by 0x493A96F: ??? +==24306== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24306== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24306== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24306== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24306== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24306== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24306== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24306== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24306== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24306== by 0x112FDA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24306== by 0x10EE73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24306== by 0x111094: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24306== by 0x110F90: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24306== by 0x1115A3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24306== by 0x10D675: main (TestCommandLineArgumentsTutorial.cpp:18) +==24306== +==24306== Open file descriptor 158: +==24306== +==24306== +==24306== Open file descriptor 155: +==24306== +==24306== +==24306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArgumentsTutorial_valgrind.txt +==24306== +==24306== +==24306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24306== +==24306== +==24306== +==24306== HEAP SUMMARY: +==24306== in use at exit: 617,874 bytes in 8,238 blocks +==24306== total heap usage: 44,943 allocs, 36,705 frees, 1,338,163,679 bytes allocated +==24306== +==24306== LEAK SUMMARY: +==24306== definitely lost: 0 bytes in 0 blocks +==24306== indirectly lost: 0 bytes in 0 blocks +==24306== possibly lost: 0 bytes in 0 blocks +==24306== still reachable: 24 bytes in 2 blocks +==24306== suppressed: 617,850 bytes in 8,236 blocks +==24306== Reachable blocks (those to which a pointer was found) are not shown. +==24306== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24306== +==24306== For lists of detected and suppressed errors, rerun with: -s +==24306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCommandLineArguments_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCommandLineArguments_valgrind.txt new file mode 100644 index 000000000..16ba000d7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCommandLineArguments_valgrind.txt @@ -0,0 +1,73 @@ +==24061== Memcheck, a memory error detector +==24061== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24061== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24061== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCommandLineArguments -malloc_debug -malloc_dump -memory_info +==24061== Parent PID: 24057 +==24061== +==24061== +==24061== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24061== Open file descriptor 12: +==24061== at 0x4CB207D: pipe (pipe.c:29) +==24061== by 0xAEA507D: ??? +==24061== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24061== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24061== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24061== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24061== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24061== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24061== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24061== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24061== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24061== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==24061== +==24061== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24061== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24061== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24061== by 0x493A822: ??? +==24061== by 0x493A96F: ??? +==24061== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24061== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24061== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24061== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24061== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24061== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24061== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24061== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24061== by 0x115FD0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24061== by 0x11158D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24061== by 0x114072: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24061== by 0x113F12: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24061== by 0x1145A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24061== by 0x10F9B5: main (TestCommandLineArguments.cpp:19) +==24061== +==24061== Open file descriptor 158: +==24061== +==24061== +==24061== Open file descriptor 155: +==24061== +==24061== +==24061== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCommandLineArguments_valgrind.txt +==24061== +==24061== +==24061== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24061== +==24061== +==24061== +==24061== HEAP SUMMARY: +==24061== in use at exit: 617,874 bytes in 8,238 blocks +==24061== total heap usage: 45,103 allocs, 36,865 frees, 1,338,180,234 bytes allocated +==24061== +==24061== LEAK SUMMARY: +==24061== definitely lost: 0 bytes in 0 blocks +==24061== indirectly lost: 0 bytes in 0 blocks +==24061== possibly lost: 0 bytes in 0 blocks +==24061== still reachable: 24 bytes in 2 blocks +==24061== suppressed: 617,850 bytes in 8,236 blocks +==24061== Reachable blocks (those to which a pointer was found) are not shown. +==24061== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24061== +==24061== For lists of detected and suppressed errors, rerun with: -s +==24061== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..d020bbc7a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25342== Memcheck, a memory error detector +==25342== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25342== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25342== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestCompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25342== Parent PID: 24057 +==25342== +==25342== +==25342== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25342== Open file descriptor 12: +==25342== at 0x87A607D: pipe (pipe.c:29) +==25342== by 0x106E107D: ??? +==25342== by 0xBF9A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25342== by 0x7FC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25342== by 0x7F60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25342== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25342== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25342== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25342== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25342== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25342== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25342== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25342== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25342== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25342== +==25342== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25342== at 0x87AAA1C: __open_nocancel (open64_nocancel.c:39) +==25342== by 0x872EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25342== by 0x7EC9822: ??? +==25342== by 0x7EC996F: ??? +==25342== by 0xC03F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25342== by 0xC03F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25342== by 0xBFF5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25342== by 0xBF9A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25342== by 0x7FC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25342== by 0x7F60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25342== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25342== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25342== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25342== by 0x169A90: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25342== by 0x163FD1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25342== by 0x16757C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25342== by 0x16741C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25342== by 0x167AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25342== by 0x161595: main (TestCompressibleNonlinearElasticitySolver.cpp:19) +==25342== +==25342== Open file descriptor 158: +==25342== +==25342== +==25342== Open file descriptor 155: +==25342== +==25342== +==25342== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCompressibleNonlinearElasticitySolver_valgrind.txt +==25342== +==25342== +==25342== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25342== +==25342== +==25342== +==25342== HEAP SUMMARY: +==25342== in use at exit: 618,290 bytes in 8,238 blocks +==25342== total heap usage: 309,159 allocs, 300,921 frees, 1,381,169,490 bytes allocated +==25342== +==25342== LEAK SUMMARY: +==25342== definitely lost: 0 bytes in 0 blocks +==25342== indirectly lost: 0 bytes in 0 blocks +==25342== possibly lost: 0 bytes in 0 blocks +==25342== still reachable: 24 bytes in 2 blocks +==25342== suppressed: 618,266 bytes in 8,236 blocks +==25342== Reachable blocks (those to which a pointer was found) are not shown. +==25342== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25342== +==25342== For lists of detected and suppressed errors, rerun with: -s +==25342== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestConductivityTensors_valgrind.txt b/log-files/2025-02-12_21-17-58/TestConductivityTensors_valgrind.txt new file mode 100644 index 000000000..c1ef3ce05 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestConductivityTensors_valgrind.txt @@ -0,0 +1,73 @@ +==44048== Memcheck, a memory error detector +==44048== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44048== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44048== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConductivityTensors -malloc_debug -malloc_dump -memory_info +==44048== Parent PID: 24057 +==44048== +==44048== +==44048== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44048== Open file descriptor 12: +==44048== at 0xA68F07D: pipe (pipe.c:29) +==44048== by 0x1432F07D: ??? +==44048== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44048== by 0xBD88418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44048== by 0xBD21D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44048== by 0xAA18D38: PetscInitialize (pinit.c:924) +==44048== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44048== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44048== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44048== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44048== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44048== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44048== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44048== by 0x121F35: main (TestConductivityTensors.cpp:19) +==44048== +==44048== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44048== at 0xA693A1C: __open_nocancel (open64_nocancel.c:39) +==44048== by 0xA617BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44048== by 0x9ECF822: ??? +==44048== by 0x9ECF96F: ??? +==44048== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44048== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44048== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44048== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44048== by 0xBD88418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44048== by 0xBD21D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44048== by 0xAA18D38: PetscInitialize (pinit.c:924) +==44048== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44048== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44048== by 0x1288D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44048== by 0x123B0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44048== by 0x12665E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44048== by 0x1264FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44048== by 0x126B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44048== by 0x121F35: main (TestConductivityTensors.cpp:19) +==44048== +==44048== Open file descriptor 158: +==44048== +==44048== +==44048== Open file descriptor 155: +==44048== +==44048== +==44048== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConductivityTensors_valgrind.txt +==44048== +==44048== +==44048== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44048== +==44048== +==44048== +==44048== HEAP SUMMARY: +==44048== in use at exit: 618,354 bytes in 8,238 blocks +==44048== total heap usage: 58,722 allocs, 50,484 frees, 1,339,526,020 bytes allocated +==44048== +==44048== LEAK SUMMARY: +==44048== definitely lost: 0 bytes in 0 blocks +==44048== indirectly lost: 0 bytes in 0 blocks +==44048== possibly lost: 0 bytes in 0 blocks +==44048== still reachable: 24 bytes in 2 blocks +==44048== suppressed: 618,330 bytes in 8,236 blocks +==44048== Reachable blocks (those to which a pointer was found) are not shown. +==44048== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44048== +==44048== For lists of detected and suppressed errors, rerun with: -s +==44048== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestConstBoundaryCondition_valgrind.txt b/log-files/2025-02-12_21-17-58/TestConstBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..d052973b5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestConstBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==25268== Memcheck, a memory error detector +==25268== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25268== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25268== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info +==25268== Parent PID: 24057 +==25268== +==25268== +==25268== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25268== Open file descriptor 12: +==25268== at 0x6CB407D: pipe (pipe.c:29) +==25268== by 0x104DE07D: ??? +==25268== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25268== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25268== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25268== by 0x7003D38: PetscInitialize (pinit.c:924) +==25268== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25268== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25268== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25268== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25268== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25268== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25268== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25268== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25268== +==25268== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25268== at 0x6CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25268== by 0x6C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25268== by 0x693C822: ??? +==25268== by 0x693C96F: ??? +==25268== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25268== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25268== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25268== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25268== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25268== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25268== by 0x7003D38: PetscInitialize (pinit.c:924) +==25268== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25268== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25268== by 0x111DEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25268== by 0x10DBB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25268== by 0x10FEA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25268== by 0x10FD9D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25268== by 0x1103B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25268== by 0x10C3B5: main (TestConstBoundaryCondition.cpp:18) +==25268== +==25268== Open file descriptor 158: +==25268== +==25268== +==25268== Open file descriptor 155: +==25268== +==25268== +==25268== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConstBoundaryCondition_valgrind.txt +==25268== +==25268== +==25268== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25268== +==25268== +==25268== +==25268== HEAP SUMMARY: +==25268== in use at exit: 618,274 bytes in 8,238 blocks +==25268== total heap usage: 47,333 allocs, 39,095 frees, 1,338,385,324 bytes allocated +==25268== +==25268== LEAK SUMMARY: +==25268== definitely lost: 0 bytes in 0 blocks +==25268== indirectly lost: 0 bytes in 0 blocks +==25268== possibly lost: 0 bytes in 0 blocks +==25268== still reachable: 24 bytes in 2 blocks +==25268== suppressed: 618,250 bytes in 8,236 blocks +==25268== Reachable blocks (those to which a pointer was found) are not shown. +==25268== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25268== +==25268== For lists of detected and suppressed errors, rerun with: -s +==25268== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt new file mode 100644 index 000000000..f0b79709d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25346== Memcheck, a memory error detector +==25346== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25346== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25346== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestContinuumMechanicsNeumannBcsAssembler -malloc_debug -malloc_dump -memory_info +==25346== Parent PID: 24057 +==25346== +==25346== +==25346== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25346== Open file descriptor 12: +==25346== at 0x866F07D: pipe (pipe.c:29) +==25346== by 0x106E107D: ??? +==25346== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25346== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25346== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25346== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25346== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25346== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25346== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25346== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25346== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25346== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25346== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25346== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25346== +==25346== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25346== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25346== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25346== by 0x7EC9822: ??? +==25346== by 0x7EC996F: ??? +==25346== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25346== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25346== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25346== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25346== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25346== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25346== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25346== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25346== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25346== by 0x132A16: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25346== by 0x12DD0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25346== by 0x130686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25346== by 0x130526: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25346== by 0x130BBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25346== by 0x12C135: main (TestContinuumMechanicsNeumannBcsAssembler.cpp:19) +==25346== +==25346== Open file descriptor 158: +==25346== +==25346== +==25346== Open file descriptor 155: +==25346== +==25346== +==25346== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContinuumMechanicsNeumannBcsAssembler_valgrind.txt +==25346== +==25346== +==25346== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25346== +==25346== +==25346== +==25346== HEAP SUMMARY: +==25346== in use at exit: 618,290 bytes in 8,238 blocks +==25346== total heap usage: 48,481 allocs, 40,243 frees, 1,338,692,212 bytes allocated +==25346== +==25346== LEAK SUMMARY: +==25346== definitely lost: 0 bytes in 0 blocks +==25346== indirectly lost: 0 bytes in 0 blocks +==25346== possibly lost: 0 bytes in 0 blocks +==25346== still reachable: 24 bytes in 2 blocks +==25346== suppressed: 618,266 bytes in 8,236 blocks +==25346== Reachable blocks (those to which a pointer was found) are not shown. +==25346== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25346== +==25346== For lists of detected and suppressed errors, rerun with: -s +==25346== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestContractionModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestContractionModels_valgrind.txt new file mode 100644 index 000000000..06d9b17f3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestContractionModels_valgrind.txt @@ -0,0 +1,73 @@ +==43619== Memcheck, a memory error detector +==43619== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43619== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43619== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestContractionModels -malloc_debug -malloc_dump -memory_info +==43619== Parent PID: 24057 +==43619== +==43619== +==43619== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43619== Open file descriptor 12: +==43619== at 0x9DC207D: pipe (pipe.c:29) +==43619== by 0x1432F07D: ??? +==43619== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43619== by 0x990E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43619== by 0x98A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43619== by 0x857BD38: PetscInitialize (pinit.c:924) +==43619== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43619== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43619== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43619== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43619== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43619== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43619== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43619== by 0x11AE95: main (TestContractionModels.cpp:19) +==43619== +==43619== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43619== at 0x9DC6A1C: __open_nocancel (open64_nocancel.c:39) +==43619== by 0x9D4ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43619== by 0x9810822: ??? +==43619== by 0x981096F: ??? +==43619== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43619== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43619== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43619== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43619== by 0x990E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43619== by 0x98A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43619== by 0x857BD38: PetscInitialize (pinit.c:924) +==43619== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43619== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43619== by 0x12263F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43619== by 0x11CBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43619== by 0x11F788: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43619== by 0x11F628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43619== by 0x11FCBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43619== by 0x11AE95: main (TestContractionModels.cpp:19) +==43619== +==43619== Open file descriptor 158: +==43619== +==43619== +==43619== Open file descriptor 155: +==43619== +==43619== +==43619== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestContractionModels_valgrind.txt +==43619== +==43619== +==43619== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43619== +==43619== +==43619== +==43619== HEAP SUMMARY: +==43619== in use at exit: 618,281 bytes in 8,234 blocks +==43619== total heap usage: 4,643,675 allocs, 4,635,441 frees, 1,548,568,554 bytes allocated +==43619== +==43619== LEAK SUMMARY: +==43619== definitely lost: 0 bytes in 0 blocks +==43619== indirectly lost: 0 bytes in 0 blocks +==43619== possibly lost: 0 bytes in 0 blocks +==43619== still reachable: 24 bytes in 2 blocks +==43619== suppressed: 618,257 bytes in 8,232 blocks +==43619== Reachable blocks (those to which a pointer was found) are not shown. +==43619== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43619== +==43619== For lists of detected and suppressed errors, rerun with: -s +==43619== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestConvergenceTester_valgrind.txt b/log-files/2025-02-12_21-17-58/TestConvergenceTester_valgrind.txt new file mode 100644 index 000000000..2ca369371 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestConvergenceTester_valgrind.txt @@ -0,0 +1,73 @@ +==41646== Memcheck, a memory error detector +==41646== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41646== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41646== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info +==41646== Parent PID: 24057 +==41646== +==41646== +==41646== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41646== Open file descriptor 12: +==41646== at 0xAC5207D: pipe (pipe.c:29) +==41646== by 0x1432F07D: ??? +==41646== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41646== by 0xC34D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41646== by 0xC2E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41646== by 0xAFDDD38: PetscInitialize (pinit.c:924) +==41646== by 0xA4521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41646== by 0xA452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41646== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41646== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41646== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41646== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41646== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41646== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41646== +==41646== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41646== at 0xAC56A1C: __open_nocancel (open64_nocancel.c:39) +==41646== by 0xABDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41646== by 0xA492822: ??? +==41646== by 0xA49296F: ??? +==41646== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41646== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41646== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41646== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41646== by 0xC34D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41646== by 0xC2E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41646== by 0xAFDDD38: PetscInitialize (pinit.c:924) +==41646== by 0xA4521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41646== by 0xA452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41646== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41646== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41646== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41646== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41646== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41646== by 0x11B5F5: main (TestConvergenceTester.cpp:18) +==41646== +==41646== Open file descriptor 158: +==41646== +==41646== +==41646== Open file descriptor 155: +==41646== +==41646== +==41646== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt +==41646== +==41646== +==41646== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41646== +==41646== +==41646== +==41646== HEAP SUMMARY: +==41646== in use at exit: 618,834 bytes in 8,248 blocks +==41646== total heap usage: 1,810,242 allocs, 1,801,994 frees, 1,914,182,765 bytes allocated +==41646== +==41646== LEAK SUMMARY: +==41646== definitely lost: 0 bytes in 0 blocks +==41646== indirectly lost: 0 bytes in 0 blocks +==41646== possibly lost: 0 bytes in 0 blocks +==41646== still reachable: 24 bytes in 2 blocks +==41646== suppressed: 618,810 bytes in 8,246 blocks +==41646== Reachable blocks (those to which a pointer was found) are not shown. +==41646== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41646== +==41646== For lists of detected and suppressed errors, rerun with: -s +==41646== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 121 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestCoupledCableTestProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCoupledCableTestProblem_valgrind.txt new file mode 100644 index 000000000..234b880cd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCoupledCableTestProblem_valgrind.txt @@ -0,0 +1,73 @@ +==25105== Memcheck, a memory error detector +==25105== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25105== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25105== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestCoupledCableTestProblem -malloc_debug -malloc_dump -memory_info +==25105== Parent PID: 24057 +==25105== +==25105== +==25105== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25105== Open file descriptor 12: +==25105== at 0x84EF07D: pipe (pipe.c:29) +==25105== by 0x104DE07D: ??? +==25105== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25105== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25105== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25105== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25105== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25105== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25105== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25105== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25105== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25105== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25105== +==25105== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25105== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25105== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25105== by 0x7D49822: ??? +==25105== by 0x7D4996F: ??? +==25105== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25105== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25105== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25105== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25105== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25105== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25105== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25105== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25105== by 0x13CC22: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25105== by 0x137D33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25105== by 0x13A8DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25105== by 0x13A7D5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25105== by 0x13ADE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25105== by 0x136535: main (TestCoupledCableTestProblem.cpp:18) +==25105== +==25105== Open file descriptor 158: +==25105== +==25105== +==25105== Open file descriptor 155: +==25105== +==25105== +==25105== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCoupledCableTestProblem_valgrind.txt +==25105== +==25105== +==25105== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25105== +==25105== +==25105== +==25105== HEAP SUMMARY: +==25105== in use at exit: 618,274 bytes in 8,238 blocks +==25105== total heap usage: 501,736 allocs, 493,498 frees, 1,359,094,510 bytes allocated +==25105== +==25105== LEAK SUMMARY: +==25105== definitely lost: 0 bytes in 0 blocks +==25105== indirectly lost: 0 bytes in 0 blocks +==25105== possibly lost: 0 bytes in 0 blocks +==25105== still reachable: 24 bytes in 2 blocks +==25105== suppressed: 618,250 bytes in 8,236 blocks +==25105== Reachable blocks (those to which a pointer was found) are not shown. +==25105== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25105== +==25105== For lists of detected and suppressed errors, rerun with: -s +==25105== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt new file mode 100644 index 000000000..6a0f75089 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39817== Memcheck, a memory error detector +==39817== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39817== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39817== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info +==39817== Parent PID: 24057 +==39817== +==39817== +==39817== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39817== Open file descriptor 12: +==39817== at 0x10CFA07D: pipe (pipe.c:29) +==39817== by 0x196B407D: ??? +==39817== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39817== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0xF292D38: PetscInitialize (pinit.c:924) +==39817== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39817== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39817== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39817== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39817== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39817== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39817== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39817== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39817== +==39817== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39817== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39817== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39817== by 0xF144822: ??? +==39817== by 0xF14496F: ??? +==39817== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39817== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39817== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39817== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39817== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39817== by 0xF292D38: PetscInitialize (pinit.c:924) +==39817== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39817== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39817== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39817== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39817== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39817== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39817== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39817== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) +==39817== +==39817== Open file descriptor 158: +==39817== +==39817== +==39817== Open file descriptor 155: +==39817== +==39817== +==39817== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt +==39817== +==39817== +==39817== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39817== +==39817== +==39817== +==39817== HEAP SUMMARY: +==39817== in use at exit: 618,370 bytes in 8,239 blocks +==39817== total heap usage: 579,746 allocs, 571,507 frees, 1,651,697,739 bytes allocated +==39817== +==39817== LEAK SUMMARY: +==39817== definitely lost: 0 bytes in 0 blocks +==39817== indirectly lost: 0 bytes in 0 blocks +==39817== possibly lost: 0 bytes in 0 blocks +==39817== still reachable: 56 bytes in 3 blocks +==39817== suppressed: 618,314 bytes in 8,236 blocks +==39817== Reachable blocks (those to which a pointer was found) are not shown. +==39817== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39817== +==39817== For lists of detected and suppressed errors, rerun with: -s +==39817== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt new file mode 100644 index 000000000..2dc5ea403 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39826== Memcheck, a memory error detector +==39826== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39826== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39826== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info +==39826== Parent PID: 24057 +==39826== +==39826== +==39826== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39826== Open file descriptor 12: +==39826== at 0x10DE107D: pipe (pipe.c:29) +==39826== by 0x196B407D: ??? +==39826== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39826== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39826== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39826== by 0xF292D38: PetscInitialize (pinit.c:924) +==39826== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39826== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39826== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39826== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39826== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39826== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39826== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39826== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39826== +==39826== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39826== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==39826== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39826== by 0xF144822: ??? +==39826== by 0xF14496F: ??? +==39826== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39826== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39826== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39826== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39826== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39826== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39826== by 0xF292D38: PetscInitialize (pinit.c:924) +==39826== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39826== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39826== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39826== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39826== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39826== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39826== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39826== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) +==39826== +==39826== Open file descriptor 158: +==39826== +==39826== +==39826== Open file descriptor 155: +==39826== +==39826== +==39826== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt +==39826== +==39826== +==39826== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39826== +==39826== +==39826== +==39826== HEAP SUMMARY: +==39826== in use at exit: 618,297 bytes in 8,235 blocks +==39826== total heap usage: 8,976,909 allocs, 8,968,674 frees, 2,183,736,330 bytes allocated +==39826== +==39826== LEAK SUMMARY: +==39826== definitely lost: 0 bytes in 0 blocks +==39826== indirectly lost: 0 bytes in 0 blocks +==39826== possibly lost: 0 bytes in 0 blocks +==39826== still reachable: 56 bytes in 3 blocks +==39826== suppressed: 618,241 bytes in 8,232 blocks +==39826== Reachable blocks (those to which a pointer was found) are not shown. +==39826== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39826== +==39826== For lists of detected and suppressed errors, rerun with: -s +==39826== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt new file mode 100644 index 000000000..a62467868 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39896== Memcheck, a memory error detector +==39896== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39896== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39896== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellKillerTutorial -malloc_debug -malloc_dump -memory_info +==39896== Parent PID: 24057 +==39896== +==39896== +==39896== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39896== Open file descriptor 12: +==39896== at 0x10DE107D: pipe (pipe.c:29) +==39896== by 0x196B407D: ??? +==39896== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39896== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39896== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39896== by 0xF292D38: PetscInitialize (pinit.c:924) +==39896== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39896== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39896== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39896== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39896== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39896== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39896== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39896== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39896== +==39896== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39896== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==39896== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39896== by 0xF144822: ??? +==39896== by 0xF14496F: ??? +==39896== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39896== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39896== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39896== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39896== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39896== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39896== by 0xF292D38: PetscInitialize (pinit.c:924) +==39896== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39896== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39896== by 0x141179: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39896== by 0x13BF3F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39896== by 0x13E6FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39896== by 0x13E5F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39896== by 0x13EC09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39896== by 0x13A735: main (TestCreatingAndUsingANewCellKillerTutorial.cpp:18) +==39896== +==39896== Open file descriptor 158: +==39896== +==39896== +==39896== Open file descriptor 155: +==39896== +==39896== +==39896== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellKillerTutorial_valgrind.txt +==39896== +==39896== +==39896== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39896== +==39896== +==39896== +==39896== HEAP SUMMARY: +==39896== in use at exit: 618,297 bytes in 8,235 blocks +==39896== total heap usage: 2,717,562 allocs, 2,709,327 frees, 1,507,789,630 bytes allocated +==39896== +==39896== LEAK SUMMARY: +==39896== definitely lost: 0 bytes in 0 blocks +==39896== indirectly lost: 0 bytes in 0 blocks +==39896== possibly lost: 0 bytes in 0 blocks +==39896== still reachable: 56 bytes in 3 blocks +==39896== suppressed: 618,241 bytes in 8,232 blocks +==39896== Reachable blocks (those to which a pointer was found) are not shown. +==39896== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39896== +==39896== For lists of detected and suppressed errors, rerun with: -s +==39896== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt new file mode 100644 index 000000000..1a97994be --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39897== Memcheck, a memory error detector +==39897== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39897== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39897== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info +==39897== Parent PID: 24057 +==39897== +==39897== +==39897== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39897== Open file descriptor 12: +==39897== at 0x10CFA07D: pipe (pipe.c:29) +==39897== by 0x196B407D: ??? +==39897== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39897== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39897== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39897== by 0xF292D38: PetscInitialize (pinit.c:924) +==39897== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39897== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39897== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39897== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39897== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39897== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39897== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39897== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39897== +==39897== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39897== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39897== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39897== by 0xF144822: ??? +==39897== by 0xF14496F: ??? +==39897== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39897== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39897== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39897== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39897== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39897== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39897== by 0xF292D38: PetscInitialize (pinit.c:924) +==39897== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39897== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39897== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39897== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39897== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39897== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39897== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39897== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) +==39897== +==39897== Open file descriptor 158: +==39897== +==39897== +==39897== Open file descriptor 155: +==39897== +==39897== +==39897== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt +==39897== +==39897== +==39897== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39897== +==39897== +==39897== +==39897== HEAP SUMMARY: +==39897== in use at exit: 618,297 bytes in 8,235 blocks +==39897== total heap usage: 4,262,894 allocs, 4,254,659 frees, 1,898,477,114 bytes allocated +==39897== +==39897== LEAK SUMMARY: +==39897== definitely lost: 0 bytes in 0 blocks +==39897== indirectly lost: 0 bytes in 0 blocks +==39897== possibly lost: 0 bytes in 0 blocks +==39897== still reachable: 56 bytes in 3 blocks +==39897== suppressed: 618,241 bytes in 8,232 blocks +==39897== Reachable blocks (those to which a pointer was found) are not shown. +==39897== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39897== +==39897== For lists of detected and suppressed errors, rerun with: -s +==39897== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt new file mode 100644 index 000000000..7f4c52ee6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==39976== Memcheck, a memory error detector +==39976== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39976== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39976== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial -malloc_debug -malloc_dump -memory_info +==39976== Parent PID: 24057 +==39976== +==39976== +==39976== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39976== Open file descriptor 12: +==39976== at 0x10CFA07D: pipe (pipe.c:29) +==39976== by 0x196B407D: ??? +==39976== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39976== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39976== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39976== by 0xF292D38: PetscInitialize (pinit.c:924) +==39976== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39976== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39976== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39976== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39976== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39976== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39976== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39976== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39976== +==39976== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39976== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39976== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39976== by 0xF144822: ??? +==39976== by 0xF14496F: ??? +==39976== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39976== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39976== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39976== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39976== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39976== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39976== by 0xF292D38: PetscInitialize (pinit.c:924) +==39976== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39976== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39976== by 0x144105: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39976== by 0x13EF9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39976== by 0x141686: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39976== by 0x141582: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39976== by 0x141B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39976== by 0x13D795: main (TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial.cpp:18) +==39976== +==39976== Open file descriptor 158: +==39976== +==39976== +==39976== Open file descriptor 155: +==39976== +==39976== +==39976== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial_valgrind.txt +==39976== +==39976== +==39976== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39976== +==39976== +==39976== +==39976== HEAP SUMMARY: +==39976== in use at exit: 618,370 bytes in 8,239 blocks +==39976== total heap usage: 426,445 allocs, 418,206 frees, 1,393,462,114 bytes allocated +==39976== +==39976== LEAK SUMMARY: +==39976== definitely lost: 0 bytes in 0 blocks +==39976== indirectly lost: 0 bytes in 0 blocks +==39976== possibly lost: 0 bytes in 0 blocks +==39976== still reachable: 56 bytes in 3 blocks +==39976== suppressed: 618,314 bytes in 8,236 blocks +==39976== Reachable blocks (those to which a pointer was found) are not shown. +==39976== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39976== +==39976== For lists of detected and suppressed errors, rerun with: -s +==39976== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt new file mode 100644 index 000000000..1cf8accfd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40003== Memcheck, a memory error detector +==40003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40003== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellPropertyTutorial -malloc_debug -malloc_dump -memory_info +==40003== Parent PID: 24057 +==40003== +==40003== +==40003== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40003== Open file descriptor 12: +==40003== at 0x10CFA07D: pipe (pipe.c:29) +==40003== by 0x196B407D: ??? +==40003== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40003== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40003== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40003== by 0xF292D38: PetscInitialize (pinit.c:924) +==40003== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40003== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40003== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40003== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40003== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40003== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40003== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40003== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==40003== +==40003== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40003== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==40003== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40003== by 0xF144822: ??? +==40003== by 0xF14496F: ??? +==40003== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40003== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40003== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40003== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40003== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40003== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40003== by 0xF292D38: PetscInitialize (pinit.c:924) +==40003== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40003== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40003== by 0x1502FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40003== by 0x14A5F9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40003== by 0x14D664: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40003== by 0x14D504: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40003== by 0x14DB9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40003== by 0x148A15: main (TestCreatingAndUsingANewCellPropertyTutorial.cpp:19) +==40003== +==40003== Open file descriptor 158: +==40003== +==40003== +==40003== Open file descriptor 155: +==40003== +==40003== +==40003== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellPropertyTutorial_valgrind.txt +==40003== +==40003== +==40003== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40003== +==40003== +==40003== +==40003== HEAP SUMMARY: +==40003== in use at exit: 618,297 bytes in 8,235 blocks +==40003== total heap usage: 2,617,266 allocs, 2,609,031 frees, 1,556,746,930 bytes allocated +==40003== +==40003== LEAK SUMMARY: +==40003== definitely lost: 0 bytes in 0 blocks +==40003== indirectly lost: 0 bytes in 0 blocks +==40003== possibly lost: 0 bytes in 0 blocks +==40003== still reachable: 56 bytes in 3 blocks +==40003== suppressed: 618,241 bytes in 8,232 blocks +==40003== Reachable blocks (those to which a pointer was found) are not shown. +==40003== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40003== +==40003== For lists of detected and suppressed errors, rerun with: -s +==40003== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewForceTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewForceTutorial_valgrind.txt new file mode 100644 index 000000000..59107f411 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewForceTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40009== Memcheck, a memory error detector +==40009== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40009== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40009== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewForceTutorial -malloc_debug -malloc_dump -memory_info +==40009== Parent PID: 24057 +==40009== +==40009== +==40009== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40009== Open file descriptor 12: +==40009== at 0x10DE107D: pipe (pipe.c:29) +==40009== by 0x196B407D: ??? +==40009== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40009== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40009== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40009== by 0xF292D38: PetscInitialize (pinit.c:924) +==40009== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40009== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40009== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40009== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40009== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40009== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40009== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40009== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==40009== +==40009== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40009== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==40009== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40009== by 0xF144822: ??? +==40009== by 0xF14496F: ??? +==40009== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40009== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40009== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40009== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40009== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40009== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40009== by 0xF292D38: PetscInitialize (pinit.c:924) +==40009== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40009== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40009== by 0x14368F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40009== by 0x13E09F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40009== by 0x140942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40009== by 0x14083D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40009== by 0x140E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40009== by 0x13C895: main (TestCreatingAndUsingANewForceTutorial.cpp:18) +==40009== +==40009== Open file descriptor 158: +==40009== +==40009== +==40009== Open file descriptor 155: +==40009== +==40009== +==40009== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewForceTutorial_valgrind.txt +==40009== +==40009== +==40009== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40009== +==40009== +==40009== +==40009== HEAP SUMMARY: +==40009== in use at exit: 618,370 bytes in 8,239 blocks +==40009== total heap usage: 681,547 allocs, 673,308 frees, 1,549,480,120 bytes allocated +==40009== +==40009== LEAK SUMMARY: +==40009== definitely lost: 0 bytes in 0 blocks +==40009== indirectly lost: 0 bytes in 0 blocks +==40009== possibly lost: 0 bytes in 0 blocks +==40009== still reachable: 56 bytes in 3 blocks +==40009== suppressed: 618,314 bytes in 8,236 blocks +==40009== Reachable blocks (those to which a pointer was found) are not shown. +==40009== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40009== +==40009== For lists of detected and suppressed errors, rerun with: -s +==40009== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt new file mode 100644 index 000000000..77da64e47 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40040== Memcheck, a memory error detector +==40040== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40040== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40040== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info +==40040== Parent PID: 24057 +==40040== +==40040== +==40040== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40040== Open file descriptor 12: +==40040== at 0x1102307D: pipe (pipe.c:29) +==40040== by 0x196B507D: ??? +==40040== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40040== by 0x10844418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40040== by 0x107DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40040== by 0xF4D4D38: PetscInitialize (pinit.c:924) +==40040== by 0xF3461D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40040== by 0xF346227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40040== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40040== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40040== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40040== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40040== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40040== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==40040== +==40040== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40040== at 0x11027A1C: __open_nocancel (open64_nocancel.c:39) +==40040== by 0x10FABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40040== by 0xF386822: ??? +==40040== by 0xF38696F: ??? +==40040== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40040== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40040== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40040== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40040== by 0x10844418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40040== by 0x107DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40040== by 0xF4D4D38: PetscInitialize (pinit.c:924) +==40040== by 0xF3461D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40040== by 0xF346227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40040== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40040== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40040== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40040== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40040== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40040== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) +==40040== +==40040== Open file descriptor 158: +==40040== +==40040== +==40040== Open file descriptor 155: +==40040== +==40040== +==40040== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt +==40040== +==40040== +==40040== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40040== +==40040== +==40040== +==40040== HEAP SUMMARY: +==40040== in use at exit: 618,297 bytes in 8,235 blocks +==40040== total heap usage: 3,817,499 allocs, 3,809,264 frees, 1,509,499,883 bytes allocated +==40040== +==40040== LEAK SUMMARY: +==40040== definitely lost: 0 bytes in 0 blocks +==40040== indirectly lost: 0 bytes in 0 blocks +==40040== possibly lost: 0 bytes in 0 blocks +==40040== still reachable: 56 bytes in 3 blocks +==40040== suppressed: 618,241 bytes in 8,232 blocks +==40040== Reachable blocks (those to which a pointer was found) are not shown. +==40040== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40040== +==40040== For lists of detected and suppressed errors, rerun with: -s +==40040== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt new file mode 100644 index 000000000..c0f8f8016 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40116== Memcheck, a memory error detector +==40116== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40116== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40116== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingNewCellBasedWritersTutorial -malloc_debug -malloc_dump -memory_info +==40116== Parent PID: 24057 +==40116== +==40116== +==40116== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40116== Open file descriptor 12: +==40116== at 0xF84307D: pipe (pipe.c:29) +==40116== by 0x196B407D: ??? +==40116== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40116== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40116== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40116== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40116== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40116== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40116== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40116== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40116== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40116== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40116== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40116== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==40116== +==40116== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40116== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==40116== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40116== by 0xF144822: ??? +==40116== by 0xF14496F: ??? +==40116== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40116== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40116== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40116== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40116== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40116== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40116== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40116== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40116== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40116== by 0x1B8DC8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40116== by 0x1B2CFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40116== by 0x1B669A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40116== by 0x1B6596: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40116== by 0x1B6BA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40116== by 0x1B14F5: main (TestCreatingAndUsingNewCellBasedWritersTutorial.cpp:18) +==40116== +==40116== Open file descriptor 158: +==40116== +==40116== +==40116== Open file descriptor 155: +==40116== +==40116== +==40116== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingNewCellBasedWritersTutorial_valgrind.txt +==40116== +==40116== +==40116== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40116== +==40116== +==40116== +==40116== HEAP SUMMARY: +==40116== in use at exit: 618,297 bytes in 8,235 blocks +==40116== total heap usage: 2,449,558 allocs, 2,441,323 frees, 1,578,043,691 bytes allocated +==40116== +==40116== LEAK SUMMARY: +==40116== definitely lost: 0 bytes in 0 blocks +==40116== indirectly lost: 0 bytes in 0 blocks +==40116== possibly lost: 0 bytes in 0 blocks +==40116== still reachable: 56 bytes in 3 blocks +==40116== suppressed: 618,241 bytes in 8,232 blocks +==40116== Reachable blocks (those to which a pointer was found) are not shown. +==40116== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40116== +==40116== For lists of detected and suppressed errors, rerun with: -s +==40116== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCryptCellsGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptCellsGenerator_valgrind.txt new file mode 100644 index 000000000..dfb10625e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==40418== Memcheck, a memory error detector +==40418== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40418== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40418== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptCellsGenerator -malloc_debug -malloc_dump -memory_info +==40418== Parent PID: 24057 +==40418== +==40418== +==40418== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40418== Open file descriptor 12: +==40418== at 0x1257807D: pipe (pipe.c:29) +==40418== by 0x1B37607D: ??? +==40418== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40418== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40418== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40418== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40418== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40418== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40418== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40418== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40418== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40418== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40418== +==40418== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40418== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40418== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40418== by 0x11D82822: ??? +==40418== by 0x11D8296F: ??? +==40418== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40418== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40418== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40418== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40418== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40418== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40418== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40418== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40418== by 0x1222A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40418== by 0x11D653: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40418== by 0x11FD06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40418== by 0x11FC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40418== by 0x120215: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40418== by 0x11BE55: main (TestCryptCellsGenerator.cpp:18) +==40418== +==40418== Open file descriptor 158: +==40418== +==40418== +==40418== Open file descriptor 155: +==40418== +==40418== +==40418== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptCellsGenerator_valgrind.txt +==40418== +==40418== +==40418== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40418== +==40418== +==40418== +==40418== HEAP SUMMARY: +==40418== in use at exit: 618,514 bytes in 8,240 blocks +==40418== total heap usage: 87,339 allocs, 79,099 frees, 1,342,272,726 bytes allocated +==40418== +==40418== LEAK SUMMARY: +==40418== definitely lost: 0 bytes in 0 blocks +==40418== indirectly lost: 0 bytes in 0 blocks +==40418== possibly lost: 0 bytes in 0 blocks +==40418== still reachable: 184 bytes in 4 blocks +==40418== suppressed: 618,330 bytes in 8,236 blocks +==40418== Reachable blocks (those to which a pointer was found) are not shown. +==40418== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40418== +==40418== For lists of detected and suppressed errors, rerun with: -s +==40418== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCryptDivisionRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptDivisionRules_valgrind.txt new file mode 100644 index 000000000..02a1ae922 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40632== Memcheck, a memory error detector +==40632== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40632== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40632== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info +==40632== Parent PID: 24057 +==40632== +==40632== +==40632== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40632== Open file descriptor 12: +==40632== at 0x125BA07D: pipe (pipe.c:29) +==40632== by 0x1B37607D: ??? +==40632== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40632== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40632== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40632== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40632== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40632== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40632== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40632== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40632== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40632== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40632== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40632== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40632== +==40632== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40632== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40632== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40632== by 0x10A04822: ??? +==40632== by 0x10A0496F: ??? +==40632== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40632== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40632== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40632== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40632== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40632== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40632== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40632== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40632== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40632== by 0x15D2DD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40632== by 0x15795D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40632== by 0x15A6A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40632== by 0x15A542: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40632== by 0x15ABD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40632== by 0x155D85: main (TestCryptDivisionRules.cpp:19) +==40632== +==40632== Open file descriptor 158: +==40632== +==40632== +==40632== Open file descriptor 155: +==40632== +==40632== +==40632== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptDivisionRules_valgrind.txt +==40632== +==40632== +==40632== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40632== +==40632== +==40632== +==40632== HEAP SUMMARY: +==40632== in use at exit: 618,402 bytes in 8,240 blocks +==40632== total heap usage: 56,683 allocs, 48,443 frees, 1,339,375,555 bytes allocated +==40632== +==40632== LEAK SUMMARY: +==40632== definitely lost: 0 bytes in 0 blocks +==40632== indirectly lost: 0 bytes in 0 blocks +==40632== possibly lost: 0 bytes in 0 blocks +==40632== still reachable: 72 bytes in 4 blocks +==40632== suppressed: 618,330 bytes in 8,236 blocks +==40632== Reachable blocks (those to which a pointer was found) are not shown. +==40632== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40632== +==40632== For lists of detected and suppressed errors, rerun with: -s +==40632== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCryptProjectionForce_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptProjectionForce_valgrind.txt new file mode 100644 index 000000000..258d6834f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptProjectionForce_valgrind.txt @@ -0,0 +1,73 @@ +==40529== Memcheck, a memory error detector +==40529== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40529== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40529== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionForce -malloc_debug -malloc_dump -memory_info +==40529== Parent PID: 24057 +==40529== +==40529== +==40529== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40529== Open file descriptor 12: +==40529== at 0x111EC07D: pipe (pipe.c:29) +==40529== by 0x1B37507D: ??? +==40529== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40529== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40529== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40529== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40529== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40529== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40529== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40529== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40529== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40529== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40529== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40529== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40529== +==40529== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40529== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) +==40529== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40529== by 0x10A04822: ??? +==40529== by 0x10A0496F: ??? +==40529== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40529== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40529== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40529== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40529== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40529== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40529== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40529== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40529== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40529== by 0x162A3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40529== by 0x15AE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40529== by 0x15DF5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40529== by 0x15DDFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40529== by 0x15E491: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40529== by 0x159295: main (TestCryptProjectionForce.cpp:19) +==40529== +==40529== Open file descriptor 158: +==40529== +==40529== +==40529== Open file descriptor 155: +==40529== +==40529== +==40529== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionForce_valgrind.txt +==40529== +==40529== +==40529== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40529== +==40529== +==40529== +==40529== HEAP SUMMARY: +==40529== in use at exit: 618,466 bytes in 8,240 blocks +==40529== total heap usage: 88,289 allocs, 80,049 frees, 1,341,617,960 bytes allocated +==40529== +==40529== LEAK SUMMARY: +==40529== definitely lost: 0 bytes in 0 blocks +==40529== indirectly lost: 0 bytes in 0 blocks +==40529== possibly lost: 0 bytes in 0 blocks +==40529== still reachable: 136 bytes in 4 blocks +==40529== suppressed: 618,330 bytes in 8,236 blocks +==40529== Reachable blocks (those to which a pointer was found) are not shown. +==40529== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40529== +==40529== For lists of detected and suppressed errors, rerun with: -s +==40529== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCryptProjectionStatistics_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptProjectionStatistics_valgrind.txt new file mode 100644 index 000000000..97e58e48d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptProjectionStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==41054== Memcheck, a memory error detector +==41054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info +==41054== Parent PID: 24057 +==41054== +==41054== +==41054== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41054== Open file descriptor 12: +==41054== at 0x1265F07D: pipe (pipe.c:29) +==41054== by 0x1B37607D: ??? +==41054== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41054== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41054== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41054== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41054== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41054== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41054== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41054== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41054== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41054== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==41054== +==41054== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41054== at 0x12663A1C: __open_nocancel (open64_nocancel.c:39) +==41054== by 0x125E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41054== by 0x11D82822: ??? +==41054== by 0x11D8296F: ??? +==41054== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41054== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41054== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41054== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41054== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41054== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41054== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41054== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41054== by 0x128443: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41054== by 0x123753: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41054== by 0x125C6C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41054== by 0x125B67: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41054== by 0x12617B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41054== by 0x121F55: main (TestCryptProjectionStatistics.cpp:18) +==41054== +==41054== Open file descriptor 158: +==41054== +==41054== +==41054== Open file descriptor 155: +==41054== +==41054== +==41054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptProjectionStatistics_valgrind.txt +==41054== +==41054== +==41054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41054== +==41054== +==41054== +==41054== HEAP SUMMARY: +==41054== in use at exit: 618,386 bytes in 8,239 blocks +==41054== total heap usage: 1,083,857 allocs, 1,075,618 frees, 1,401,240,057 bytes allocated +==41054== +==41054== LEAK SUMMARY: +==41054== definitely lost: 0 bytes in 0 blocks +==41054== indirectly lost: 0 bytes in 0 blocks +==41054== possibly lost: 0 bytes in 0 blocks +==41054== still reachable: 56 bytes in 3 blocks +==41054== suppressed: 618,330 bytes in 8,236 blocks +==41054== Reachable blocks (those to which a pointer was found) are not shown. +==41054== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41054== +==41054== For lists of detected and suppressed errors, rerun with: -s +==41054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCryptSimulation1d_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptSimulation1d_valgrind.txt new file mode 100644 index 000000000..0fed16351 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptSimulation1d_valgrind.txt @@ -0,0 +1,73 @@ +==40682== Memcheck, a memory error detector +==40682== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40682== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40682== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info +==40682== Parent PID: 24057 +==40682== +==40682== +==40682== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40682== Open file descriptor 12: +==40682== at 0x125BA07D: pipe (pipe.c:29) +==40682== by 0x1B37607D: ??? +==40682== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40682== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40682== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40682== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40682== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40682== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40682== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40682== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40682== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40682== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40682== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40682== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40682== +==40682== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40682== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40682== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40682== by 0x10A04822: ??? +==40682== by 0x10A0496F: ??? +==40682== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40682== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40682== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40682== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40682== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40682== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40682== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40682== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40682== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40682== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40682== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40682== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40682== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40682== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40682== by 0x21B395: main (TestCryptSimulation1d.cpp:18) +==40682== +==40682== Open file descriptor 158: +==40682== +==40682== +==40682== Open file descriptor 155: +==40682== +==40682== +==40682== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt +==40682== +==40682== +==40682== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40682== +==40682== +==40682== +==40682== HEAP SUMMARY: +==40682== in use at exit: 618,313 bytes in 8,235 blocks +==40682== total heap usage: 4,119,326 allocs, 4,111,091 frees, 1,972,574,766 bytes allocated +==40682== +==40682== LEAK SUMMARY: +==40682== definitely lost: 0 bytes in 0 blocks +==40682== indirectly lost: 0 bytes in 0 blocks +==40682== possibly lost: 0 bytes in 0 blocks +==40682== still reachable: 56 bytes in 3 blocks +==40682== suppressed: 618,257 bytes in 8,232 blocks +==40682== Reachable blocks (those to which a pointer was found) are not shown. +==40682== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40682== +==40682== For lists of detected and suppressed errors, rerun with: -s +==40682== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..31f84a63d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40721== Memcheck, a memory error detector +==40721== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40721== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40721== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40721== Parent PID: 24057 +==40721== +==40721== +==40721== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40721== Open file descriptor 12: +==40721== at 0x111EC07D: pipe (pipe.c:29) +==40721== by 0x1B37507D: ??? +==40721== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40721== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40721== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40721== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40721== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40721== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40721== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40721== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40721== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40721== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40721== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40721== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40721== +==40721== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40721== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) +==40721== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40721== by 0x10A04822: ??? +==40721== by 0x10A0496F: ??? +==40721== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40721== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40721== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40721== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40721== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40721== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40721== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40721== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40721== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40721== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40721== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40721== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40721== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40721== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40721== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) +==40721== +==40721== Open file descriptor 158: +==40721== +==40721== +==40721== Open file descriptor 155: +==40721== +==40721== +==40721== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt +==40721== +==40721== +==40721== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40721== +==40721== +==40721== +==40721== HEAP SUMMARY: +==40721== in use at exit: 618,313 bytes in 8,235 blocks +==40721== total heap usage: 6,320,396 allocs, 6,312,161 frees, 2,056,765,569 bytes allocated +==40721== +==40721== LEAK SUMMARY: +==40721== definitely lost: 0 bytes in 0 blocks +==40721== indirectly lost: 0 bytes in 0 blocks +==40721== possibly lost: 0 bytes in 0 blocks +==40721== still reachable: 56 bytes in 3 blocks +==40721== suppressed: 618,257 bytes in 8,232 blocks +==40721== Reachable blocks (those to which a pointer was found) are not shown. +==40721== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40721== +==40721== For lists of detected and suppressed errors, rerun with: -s +==40721== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..2e199fa6b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==40815== Memcheck, a memory error detector +==40815== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40815== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40815== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==40815== Parent PID: 24057 +==40815== +==40815== +==40815== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40815== Open file descriptor 12: +==40815== at 0x125BA07D: pipe (pipe.c:29) +==40815== by 0x1B37607D: ??? +==40815== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40815== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40815== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40815== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40815== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40815== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40815== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40815== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40815== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40815== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40815== +==40815== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40815== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40815== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40815== by 0x10A04822: ??? +==40815== by 0x10A0496F: ??? +==40815== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40815== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40815== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40815== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40815== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40815== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40815== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40815== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40815== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40815== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40815== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40815== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) +==40815== +==40815== Open file descriptor 158: +==40815== +==40815== +==40815== Open file descriptor 155: +==40815== +==40815== +==40815== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt +==40815== +==40815== +==40815== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40815== +==40815== +==40815== +==40815== HEAP SUMMARY: +==40815== in use at exit: 618,313 bytes in 8,235 blocks +==40815== total heap usage: 3,713,954 allocs, 3,705,719 frees, 1,620,333,024 bytes allocated +==40815== +==40815== LEAK SUMMARY: +==40815== definitely lost: 0 bytes in 0 blocks +==40815== indirectly lost: 0 bytes in 0 blocks +==40815== possibly lost: 0 bytes in 0 blocks +==40815== still reachable: 56 bytes in 3 blocks +==40815== suppressed: 618,257 bytes in 8,232 blocks +==40815== Reachable blocks (those to which a pointer was found) are not shown. +==40815== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40815== +==40815== For lists of detected and suppressed errors, rerun with: -s +==40815== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCryptSimulationBoundaryCondition_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptSimulationBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..c2507b08b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptSimulationBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==40633== Memcheck, a memory error detector +==40633== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40633== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40633== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info +==40633== Parent PID: 24057 +==40633== +==40633== +==40633== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40633== Open file descriptor 12: +==40633== at 0x125BA07D: pipe (pipe.c:29) +==40633== by 0x1B37607D: ??? +==40633== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40633== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40633== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40633== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40633== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40633== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40633== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40633== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40633== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40633== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40633== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40633== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40633== +==40633== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40633== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) +==40633== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40633== by 0x10A04822: ??? +==40633== by 0x10A0496F: ??? +==40633== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40633== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40633== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40633== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40633== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40633== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40633== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40633== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40633== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40633== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40633== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40633== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40633== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40633== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40633== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) +==40633== +==40633== Open file descriptor 158: +==40633== +==40633== +==40633== Open file descriptor 155: +==40633== +==40633== +==40633== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt +==40633== +==40633== +==40633== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40633== +==40633== +==40633== +==40633== HEAP SUMMARY: +==40633== in use at exit: 618,466 bytes in 8,240 blocks +==40633== total heap usage: 70,045 allocs, 61,805 frees, 1,343,021,202 bytes allocated +==40633== +==40633== LEAK SUMMARY: +==40633== definitely lost: 0 bytes in 0 blocks +==40633== indirectly lost: 0 bytes in 0 blocks +==40633== possibly lost: 0 bytes in 0 blocks +==40633== still reachable: 136 bytes in 4 blocks +==40633== suppressed: 618,330 bytes in 8,236 blocks +==40633== Reachable blocks (those to which a pointer was found) are not shown. +==40633== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40633== +==40633== For lists of detected and suppressed errors, rerun with: -s +==40633== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCryptStatistics_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCryptStatistics_valgrind.txt new file mode 100644 index 000000000..e03b8fa28 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCryptStatistics_valgrind.txt @@ -0,0 +1,73 @@ +==41095== Memcheck, a memory error detector +==41095== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41095== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41095== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info +==41095== Parent PID: 24057 +==41095== +==41095== +==41095== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41095== Open file descriptor 12: +==41095== at 0x1271407D: pipe (pipe.c:29) +==41095== by 0x1B37607D: ??? +==41095== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41095== by 0x11F35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41095== by 0x11ECED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41095== by 0x10BC5D38: PetscInitialize (pinit.c:924) +==41095== by 0x10A371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41095== by 0x10A37227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41095== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41095== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41095== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41095== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41095== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41095== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==41095== +==41095== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41095== at 0x12718A1C: __open_nocancel (open64_nocancel.c:39) +==41095== by 0x1269CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41095== by 0x10A77822: ??? +==41095== by 0x10A7796F: ??? +==41095== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41095== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41095== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41095== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41095== by 0x11F35418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41095== by 0x11ECED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41095== by 0x10BC5D38: PetscInitialize (pinit.c:924) +==41095== by 0x10A371D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41095== by 0x10A37227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41095== by 0x1BB797: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41095== by 0x1B35DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41095== by 0x1B6DC2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41095== by 0x1B6CBD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41095== by 0x1B72D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41095== by 0x1B1DD5: main (TestCryptStatistics.cpp:18) +==41095== +==41095== Open file descriptor 158: +==41095== +==41095== +==41095== Open file descriptor 155: +==41095== +==41095== +==41095== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptStatistics_valgrind.txt +==41095== +==41095== +==41095== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41095== +==41095== +==41095== +==41095== HEAP SUMMARY: +==41095== in use at exit: 618,281 bytes in 8,234 blocks +==41095== total heap usage: 1,798,763 allocs, 1,790,529 frees, 1,443,892,942 bytes allocated +==41095== +==41095== LEAK SUMMARY: +==41095== definitely lost: 0 bytes in 0 blocks +==41095== indirectly lost: 0 bytes in 0 blocks +==41095== possibly lost: 0 bytes in 0 blocks +==41095== still reachable: 24 bytes in 2 blocks +==41095== suppressed: 618,257 bytes in 8,232 blocks +==41095== Reachable blocks (those to which a pointer was found) are not shown. +==41095== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41095== +==41095== For lists of detected and suppressed errors, rerun with: -s +==41095== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCvodeAdaptor_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCvodeAdaptor_valgrind.txt new file mode 100644 index 000000000..1a4e3000c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCvodeAdaptor_valgrind.txt @@ -0,0 +1,73 @@ +==25023== Memcheck, a memory error detector +==25023== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25023== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25023== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestCvodeAdaptor -malloc_debug -malloc_dump -memory_info +==25023== Parent PID: 24057 +==25023== +==25023== +==25023== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25023== Open file descriptor 12: +==25023== at 0x4F5207D: pipe (pipe.c:29) +==25023== by 0xB1E607D: ??? +==25023== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25023== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25023== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25023== by 0x5308D38: PetscInitialize (pinit.c:924) +==25023== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25023== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25023== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25023== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25023== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25023== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25023== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25023== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==25023== +==25023== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25023== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==25023== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25023== by 0x4B7C822: ??? +==25023== by 0x4B7C96F: ??? +==25023== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25023== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25023== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25023== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25023== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25023== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25023== by 0x5308D38: PetscInitialize (pinit.c:924) +==25023== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25023== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25023== by 0x126E96: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25023== by 0x1215DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25023== by 0x1243B4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25023== by 0x124254: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25023== by 0x1248EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25023== by 0x11F185: main (TestCvodeAdaptor.cpp:19) +==25023== +==25023== Open file descriptor 158: +==25023== +==25023== +==25023== Open file descriptor 155: +==25023== +==25023== +==25023== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeAdaptor_valgrind.txt +==25023== +==25023== +==25023== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25023== +==25023== +==25023== +==25023== HEAP SUMMARY: +==25023== in use at exit: 617,938 bytes in 8,238 blocks +==25023== total heap usage: 49,835 allocs, 41,597 frees, 1,338,664,932 bytes allocated +==25023== +==25023== LEAK SUMMARY: +==25023== definitely lost: 0 bytes in 0 blocks +==25023== indirectly lost: 0 bytes in 0 blocks +==25023== possibly lost: 0 bytes in 0 blocks +==25023== still reachable: 24 bytes in 2 blocks +==25023== suppressed: 617,914 bytes in 8,236 blocks +==25023== Reachable blocks (those to which a pointer was found) are not shown. +==25023== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25023== +==25023== For lists of detected and suppressed errors, rerun with: -s +==25023== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCvodeCellsWithDataClamp_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCvodeCellsWithDataClamp_valgrind.txt new file mode 100644 index 000000000..90a86740c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCvodeCellsWithDataClamp_valgrind.txt @@ -0,0 +1,73 @@ +==41687== Memcheck, a memory error detector +==41687== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41687== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41687== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info +==41687== Parent PID: 24057 +==41687== +==41687== +==41687== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41687== Open file descriptor 12: +==41687== at 0x9D9107D: pipe (pipe.c:29) +==41687== by 0x1432F07D: ??? +==41687== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41687== by 0x98DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41687== by 0x9876D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41687== by 0x856DD38: PetscInitialize (pinit.c:924) +==41687== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41687== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41687== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41687== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41687== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41687== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41687== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41687== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41687== +==41687== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41687== at 0x9D95A1C: __open_nocancel (open64_nocancel.c:39) +==41687== by 0x9D19BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41687== by 0x841F822: ??? +==41687== by 0x841F96F: ??? +==41687== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41687== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41687== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41687== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41687== by 0x98DD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41687== by 0x9876D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41687== by 0x856DD38: PetscInitialize (pinit.c:924) +==41687== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41687== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41687== by 0x12948D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41687== by 0x124351: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41687== by 0x126E16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41687== by 0x126CB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41687== by 0x12734D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41687== by 0x1222A5: main (TestCvodeCellsWithDataClamp.cpp:19) +==41687== +==41687== Open file descriptor 158: +==41687== +==41687== +==41687== Open file descriptor 155: +==41687== +==41687== +==41687== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCellsWithDataClamp_valgrind.txt +==41687== +==41687== +==41687== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41687== +==41687== +==41687== +==41687== HEAP SUMMARY: +==41687== in use at exit: 624,636 bytes in 8,243 blocks +==41687== total heap usage: 102,616 allocs, 94,373 frees, 1,481,816,854 bytes allocated +==41687== +==41687== LEAK SUMMARY: +==41687== definitely lost: 0 bytes in 0 blocks +==41687== indirectly lost: 0 bytes in 0 blocks +==41687== possibly lost: 0 bytes in 0 blocks +==41687== still reachable: 6,379 bytes in 11 blocks +==41687== suppressed: 618,257 bytes in 8,232 blocks +==41687== Reachable blocks (those to which a pointer was found) are not shown. +==41687== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41687== +==41687== For lists of detected and suppressed errors, rerun with: -s +==41687== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestCvodeCells_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCvodeCells_valgrind.txt new file mode 100644 index 000000000..ab3ddb0c9 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCvodeCells_valgrind.txt @@ -0,0 +1,73 @@ +==41683== Memcheck, a memory error detector +==41683== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41683== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41683== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info +==41683== Parent PID: 24057 +==41683== +==41683== +==41683== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41683== Open file descriptor 12: +==41683== at 0x9D1D07D: pipe (pipe.c:29) +==41683== by 0x1432F07D: ??? +==41683== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41683== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41683== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41683== by 0x85E0D38: PetscInitialize (pinit.c:924) +==41683== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41683== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41683== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41683== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41683== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41683== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41683== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41683== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41683== +==41683== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41683== at 0x9D21A1C: __open_nocancel (open64_nocancel.c:39) +==41683== by 0x9CA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41683== by 0x8492822: ??? +==41683== by 0x849296F: ??? +==41683== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41683== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41683== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41683== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41683== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41683== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41683== by 0x85E0D38: PetscInitialize (pinit.c:924) +==41683== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41683== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41683== by 0x1353CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41683== by 0x12FB8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41683== by 0x132882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41683== by 0x132722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41683== by 0x132DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41683== by 0x12AB65: main (TestCvodeCells.cpp:19) +==41683== +==41683== Open file descriptor 158: +==41683== +==41683== +==41683== Open file descriptor 155: +==41683== +==41683== +==41683== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt +==41683== +==41683== +==41683== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41683== +==41683== +==41683== +==41683== HEAP SUMMARY: +==41683== in use at exit: 620,052 bytes in 8,238 blocks +==41683== total heap usage: 231,020 allocs, 222,782 frees, 1,363,913,465 bytes allocated +==41683== +==41683== LEAK SUMMARY: +==41683== definitely lost: 0 bytes in 0 blocks +==41683== indirectly lost: 0 bytes in 0 blocks +==41683== possibly lost: 0 bytes in 0 blocks +==41683== still reachable: 1,795 bytes in 6 blocks +==41683== suppressed: 618,257 bytes in 8,232 blocks +==41683== Reachable blocks (those to which a pointer was found) are not shown. +==41683== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41683== +==41683== For lists of detected and suppressed errors, rerun with: -s +==41683== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestCvodeWithJacobian_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCvodeWithJacobian_valgrind.txt new file mode 100644 index 000000000..b9de27a1d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCvodeWithJacobian_valgrind.txt @@ -0,0 +1,73 @@ +==41910== Memcheck, a memory error detector +==41910== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41910== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41910== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info +==41910== Parent PID: 24057 +==41910== +==41910== +==41910== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41910== Open file descriptor 12: +==41910== at 0x9C6807D: pipe (pipe.c:29) +==41910== by 0x1432F07D: ??? +==41910== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41910== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41910== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41910== by 0x8508D38: PetscInitialize (pinit.c:924) +==41910== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41910== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41910== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41910== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41910== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41910== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41910== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41910== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41910== +==41910== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41910== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==41910== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41910== by 0x979D822: ??? +==41910== by 0x979D96F: ??? +==41910== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41910== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41910== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41910== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41910== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41910== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41910== by 0x8508D38: PetscInitialize (pinit.c:924) +==41910== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41910== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41910== by 0x117769: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41910== by 0x1133B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41910== by 0x1155A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41910== by 0x11549E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41910== by 0x115AB1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41910== by 0x111BB5: main (TestCvodeWithJacobian.cpp:18) +==41910== +==41910== Open file descriptor 158: +==41910== +==41910== +==41910== Open file descriptor 155: +==41910== +==41910== +==41910== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeWithJacobian_valgrind.txt +==41910== +==41910== +==41910== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41910== +==41910== +==41910== +==41910== HEAP SUMMARY: +==41910== in use at exit: 618,281 bytes in 8,234 blocks +==41910== total heap usage: 74,028 allocs, 65,794 frees, 1,342,639,967 bytes allocated +==41910== +==41910== LEAK SUMMARY: +==41910== definitely lost: 0 bytes in 0 blocks +==41910== indirectly lost: 0 bytes in 0 blocks +==41910== possibly lost: 0 bytes in 0 blocks +==41910== still reachable: 24 bytes in 2 blocks +==41910== suppressed: 618,257 bytes in 8,232 blocks +==41910== Reachable blocks (those to which a pointer was found) are not shown. +==41910== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41910== +==41910== For lists of detected and suppressed errors, rerun with: -s +==41910== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestCwd_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCwd_valgrind.txt new file mode 100644 index 000000000..3fc92e142 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCwd_valgrind.txt @@ -0,0 +1,73 @@ +==24090== Memcheck, a memory error detector +==24090== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24090== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24090== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info +==24090== Parent PID: 24057 +==24090== +==24090== +==24090== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24090== Open file descriptor 12: +==24090== at 0x616907D: pipe (pipe.c:29) +==24090== by 0xAEA507D: ??? +==24090== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24090== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24090== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24090== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24090== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24090== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24090== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24090== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24090== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24090== by 0x10D7B5: main (TestCwd.cpp:18) +==24090== +==24090== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24090== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24090== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24090== by 0x5CB8822: ??? +==24090== by 0x5CB896F: ??? +==24090== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24090== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24090== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24090== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24090== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24090== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24090== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24090== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24090== by 0x1130E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24090== by 0x10EFB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24090== by 0x1111A2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24090== by 0x11109E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24090== by 0x1116B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24090== by 0x10D7B5: main (TestCwd.cpp:18) +==24090== +==24090== Open file descriptor 158: +==24090== +==24090== +==24090== Open file descriptor 155: +==24090== +==24090== +==24090== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCwd_valgrind.txt +==24090== +==24090== +==24090== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24090== +==24090== +==24090== +==24090== HEAP SUMMARY: +==24090== in use at exit: 617,874 bytes in 8,238 blocks +==24090== total heap usage: 44,919 allocs, 36,681 frees, 1,338,165,572 bytes allocated +==24090== +==24090== LEAK SUMMARY: +==24090== definitely lost: 0 bytes in 0 blocks +==24090== indirectly lost: 0 bytes in 0 blocks +==24090== possibly lost: 0 bytes in 0 blocks +==24090== still reachable: 24 bytes in 2 blocks +==24090== suppressed: 617,850 bytes in 8,236 blocks +==24090== Reachable blocks (those to which a pointer was found) are not shown. +==24090== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24090== +==24090== For lists of detected and suppressed errors, rerun with: -s +==24090== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCylindrical2dMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCylindrical2dMesh_valgrind.txt new file mode 100644 index 000000000..eec1b7064 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCylindrical2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24567== Memcheck, a memory error detector +==24567== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24567== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24567== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dMesh -malloc_debug -malloc_dump -memory_info +==24567== Parent PID: 24057 +==24567== +==24567== +==24567== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24567== Open file descriptor 12: +==24567== at 0x823C07D: pipe (pipe.c:29) +==24567== by 0x100CC07D: ??? +==24567== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24567== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24567== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24567== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24567== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24567== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24567== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24567== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24567== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24567== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24567== +==24567== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24567== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24567== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24567== by 0x659D822: ??? +==24567== by 0x659D96F: ??? +==24567== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24567== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24567== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24567== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24567== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24567== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24567== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24567== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24567== by 0x12A575: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24567== by 0x124FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24567== by 0x127D3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24567== by 0x127BDF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24567== by 0x128275: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24567== by 0x123425: main (TestCylindrical2dMesh.cpp:19) +==24567== +==24567== Open file descriptor 158: +==24567== +==24567== +==24567== Open file descriptor 155: +==24567== +==24567== +==24567== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dMesh_valgrind.txt +==24567== +==24567== +==24567== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24567== +==24567== +==24567== +==24567== HEAP SUMMARY: +==24567== in use at exit: 618,242 bytes in 8,238 blocks +==24567== total heap usage: 165,851 allocs, 157,613 frees, 1,356,853,136 bytes allocated +==24567== +==24567== LEAK SUMMARY: +==24567== definitely lost: 0 bytes in 0 blocks +==24567== indirectly lost: 0 bytes in 0 blocks +==24567== possibly lost: 0 bytes in 0 blocks +==24567== still reachable: 24 bytes in 2 blocks +==24567== suppressed: 618,218 bytes in 8,236 blocks +==24567== Reachable blocks (those to which a pointer was found) are not shown. +==24567== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24567== +==24567== For lists of detected and suppressed errors, rerun with: -s +==24567== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCylindrical2dNodesOnlyMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCylindrical2dNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..3146be9a0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCylindrical2dNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24568== Memcheck, a memory error detector +==24568== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24568== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24568== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24568== Parent PID: 24057 +==24568== +==24568== +==24568== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24568== Open file descriptor 12: +==24568== at 0x6D8507D: pipe (pipe.c:29) +==24568== by 0x100CC07D: ??? +==24568== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24568== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24568== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24568== by 0x701FD38: PetscInitialize (pinit.c:924) +==24568== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24568== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24568== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24568== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24568== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24568== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24568== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24568== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24568== +==24568== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24568== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24568== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24568== by 0x659D822: ??? +==24568== by 0x659D96F: ??? +==24568== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24568== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24568== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24568== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24568== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24568== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24568== by 0x701FD38: PetscInitialize (pinit.c:924) +==24568== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24568== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24568== by 0x126F1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24568== by 0x121B9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24568== by 0x1248C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24568== by 0x124768: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24568== by 0x124DFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24568== by 0x11FFC5: main (TestCylindrical2dNodesOnlyMesh.cpp:19) +==24568== +==24568== Open file descriptor 158: +==24568== +==24568== +==24568== Open file descriptor 155: +==24568== +==24568== +==24568== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dNodesOnlyMesh_valgrind.txt +==24568== +==24568== +==24568== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24568== +==24568== +==24568== +==24568== HEAP SUMMARY: +==24568== in use at exit: 618,242 bytes in 8,238 blocks +==24568== total heap usage: 58,558 allocs, 50,320 frees, 1,341,297,379 bytes allocated +==24568== +==24568== LEAK SUMMARY: +==24568== definitely lost: 0 bytes in 0 blocks +==24568== indirectly lost: 0 bytes in 0 blocks +==24568== possibly lost: 0 bytes in 0 blocks +==24568== still reachable: 24 bytes in 2 blocks +==24568== suppressed: 618,218 bytes in 8,236 blocks +==24568== Reachable blocks (those to which a pointer was found) are not shown. +==24568== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24568== +==24568== For lists of detected and suppressed errors, rerun with: -s +==24568== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCylindrical2dVertexMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCylindrical2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..be7064e4f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCylindrical2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24710== Memcheck, a memory error detector +==24710== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24710== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24710== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindrical2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24710== Parent PID: 24057 +==24710== +==24710== +==24710== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24710== Open file descriptor 12: +==24710== at 0x823C07D: pipe (pipe.c:29) +==24710== by 0x100CC07D: ??? +==24710== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24710== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24710== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24710== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24710== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24710== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24710== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24710== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24710== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24710== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24710== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24710== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24710== +==24710== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24710== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24710== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24710== by 0x659D822: ??? +==24710== by 0x659D96F: ??? +==24710== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24710== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24710== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24710== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24710== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24710== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24710== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24710== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24710== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24710== by 0x129413: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24710== by 0x123FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24710== by 0x126C38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24710== by 0x126AD9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24710== by 0x12716F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24710== by 0x1223E5: main (TestCylindrical2dVertexMesh.cpp:19) +==24710== +==24710== Open file descriptor 158: +==24710== +==24710== +==24710== Open file descriptor 155: +==24710== +==24710== +==24710== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindrical2dVertexMesh_valgrind.txt +==24710== +==24710== +==24710== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24710== +==24710== +==24710== +==24710== HEAP SUMMARY: +==24710== in use at exit: 618,242 bytes in 8,238 blocks +==24710== total heap usage: 152,614 allocs, 144,376 frees, 1,348,607,946 bytes allocated +==24710== +==24710== LEAK SUMMARY: +==24710== definitely lost: 0 bytes in 0 blocks +==24710== indirectly lost: 0 bytes in 0 blocks +==24710== possibly lost: 0 bytes in 0 blocks +==24710== still reachable: 24 bytes in 2 blocks +==24710== suppressed: 618,218 bytes in 8,236 blocks +==24710== Reachable blocks (those to which a pointer was found) are not shown. +==24710== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24710== +==24710== For lists of detected and suppressed errors, rerun with: -s +==24710== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestCylindricalHoneycombMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCylindricalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..4509d3813 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCylindricalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24583== Memcheck, a memory error detector +==24583== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24583== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24583== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24583== Parent PID: 24057 +==24583== +==24583== +==24583== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24583== Open file descriptor 12: +==24583== at 0x811107D: pipe (pipe.c:29) +==24583== by 0x100CC07D: ??? +==24583== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24583== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24583== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24583== by 0x6686D38: PetscInitialize (pinit.c:924) +==24583== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24583== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24583== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24583== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24583== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24583== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24583== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24583== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24583== +==24583== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24583== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24583== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24583== by 0x791B822: ??? +==24583== by 0x791B96F: ??? +==24583== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24583== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24583== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24583== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24583== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24583== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24583== by 0x6686D38: PetscInitialize (pinit.c:924) +==24583== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24583== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24583== by 0x11A3C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24583== by 0x1156CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24583== by 0x1181AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24583== by 0x11804C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24583== by 0x1186E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24583== by 0x113AF5: main (TestCylindricalHoneycombMeshGenerator.cpp:19) +==24583== +==24583== Open file descriptor 158: +==24583== +==24583== +==24583== Open file descriptor 155: +==24583== +==24583== +==24583== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombMeshGenerator_valgrind.txt +==24583== +==24583== +==24583== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24583== +==24583== +==24583== +==24583== HEAP SUMMARY: +==24583== in use at exit: 618,242 bytes in 8,238 blocks +==24583== total heap usage: 92,054 allocs, 83,816 frees, 1,341,719,130 bytes allocated +==24583== +==24583== LEAK SUMMARY: +==24583== definitely lost: 0 bytes in 0 blocks +==24583== indirectly lost: 0 bytes in 0 blocks +==24583== possibly lost: 0 bytes in 0 blocks +==24583== still reachable: 24 bytes in 2 blocks +==24583== suppressed: 618,218 bytes in 8,236 blocks +==24583== Reachable blocks (those to which a pointer was found) are not shown. +==24583== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24583== +==24583== For lists of detected and suppressed errors, rerun with: -s +==24583== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..8d774f4a7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24712== Memcheck, a memory error detector +==24712== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24712== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24712== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestCylindricalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24712== Parent PID: 24057 +==24712== +==24712== +==24712== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24712== Open file descriptor 12: +==24712== at 0x811107D: pipe (pipe.c:29) +==24712== by 0x100CC07D: ??? +==24712== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24712== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24712== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24712== by 0x6686D38: PetscInitialize (pinit.c:924) +==24712== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24712== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24712== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24712== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24712== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24712== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24712== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24712== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24712== +==24712== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24712== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24712== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24712== by 0x791B822: ??? +==24712== by 0x791B96F: ??? +==24712== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24712== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24712== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24712== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24712== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24712== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24712== by 0x6686D38: PetscInitialize (pinit.c:924) +==24712== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24712== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24712== by 0x11A15D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24712== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24712== by 0x1162D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24712== by 0x116176: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24712== by 0x11680D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24712== by 0x111D75: main (TestCylindricalHoneycombVertexMeshGenerator.cpp:19) +==24712== +==24712== Open file descriptor 158: +==24712== +==24712== +==24712== Open file descriptor 155: +==24712== +==24712== +==24712== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCylindricalHoneycombVertexMeshGenerator_valgrind.txt +==24712== +==24712== +==24712== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24712== +==24712== +==24712== +==24712== HEAP SUMMARY: +==24712== in use at exit: 618,242 bytes in 8,238 blocks +==24712== total heap usage: 50,610 allocs, 42,372 frees, 1,338,862,561 bytes allocated +==24712== +==24712== LEAK SUMMARY: +==24712== definitely lost: 0 bytes in 0 blocks +==24712== indirectly lost: 0 bytes in 0 blocks +==24712== possibly lost: 0 bytes in 0 blocks +==24712== still reachable: 24 bytes in 2 blocks +==24712== suppressed: 618,218 bytes in 8,236 blocks +==24712== Reachable blocks (those to which a pointer was found) are not shown. +==24712== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24712== +==24712== For lists of detected and suppressed errors, rerun with: -s +==24712== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestDebug_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDebug_valgrind.txt new file mode 100644 index 000000000..cc6d76a4d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDebug_valgrind.txt @@ -0,0 +1,73 @@ +==24116== Memcheck, a memory error detector +==24116== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24116== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24116== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDebug -malloc_debug -malloc_dump -memory_info +==24116== Parent PID: 24057 +==24116== +==24116== +==24116== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24116== Open file descriptor 12: +==24116== at 0x4CB207D: pipe (pipe.c:29) +==24116== by 0xAEA507D: ??? +==24116== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24116== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24116== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24116== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24116== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24116== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24116== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24116== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24116== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24116== by 0x10D635: main (TestDebug.cpp:18) +==24116== +==24116== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24116== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24116== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24116== by 0x493A822: ??? +==24116== by 0x493A96F: ??? +==24116== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24116== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24116== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24116== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24116== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24116== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24116== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24116== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24116== by 0x112F42: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24116== by 0x10EE33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24116== by 0x11100C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24116== by 0x110F08: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24116== by 0x11151B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24116== by 0x10D635: main (TestDebug.cpp:18) +==24116== +==24116== Open file descriptor 158: +==24116== +==24116== +==24116== Open file descriptor 155: +==24116== +==24116== +==24116== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDebug_valgrind.txt +==24116== +==24116== +==24116== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24116== +==24116== +==24116== +==24116== HEAP SUMMARY: +==24116== in use at exit: 617,874 bytes in 8,238 blocks +==24116== total heap usage: 44,919 allocs, 36,681 frees, 1,340,566,636 bytes allocated +==24116== +==24116== LEAK SUMMARY: +==24116== definitely lost: 0 bytes in 0 blocks +==24116== indirectly lost: 0 bytes in 0 blocks +==24116== possibly lost: 0 bytes in 0 blocks +==24116== still reachable: 24 bytes in 2 blocks +==24116== suppressed: 617,850 bytes in 8,236 blocks +==24116== Reachable blocks (those to which a pointer was found) are not shown. +==24116== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24116== +==24116== For lists of detected and suppressed errors, rerun with: -s +==24116== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestDeltaNotchModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDeltaNotchModifier_valgrind.txt new file mode 100644 index 000000000..7ae2e467a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDeltaNotchModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26337== Memcheck, a memory error detector +==26337== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26337== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26337== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchModifier -malloc_debug -malloc_dump -memory_info +==26337== Parent PID: 24057 +==26337== +==26337== +==26337== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26337== Open file descriptor 12: +==26337== at 0xF84307D: pipe (pipe.c:29) +==26337== by 0x196B407D: ??? +==26337== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26337== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26337== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26337== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26337== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26337== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26337== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26337== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26337== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26337== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26337== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26337== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26337== +==26337== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26337== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26337== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26337== by 0xF144822: ??? +==26337== by 0xF14496F: ??? +==26337== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26337== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26337== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26337== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26337== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26337== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26337== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26337== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26337== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26337== by 0x208508: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26337== by 0x1FFF99: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26337== by 0x203992: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26337== by 0x203832: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26337== by 0x203EC9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26337== by 0x1FE3B5: main (TestDeltaNotchModifier.cpp:19) +==26337== +==26337== Open file descriptor 158: +==26337== +==26337== +==26337== Open file descriptor 155: +==26337== +==26337== +==26337== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchModifier_valgrind.txt +==26337== +==26337== +==26337== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26337== +==26337== +==26337== +==26337== HEAP SUMMARY: +==26337== in use at exit: 618,297 bytes in 8,235 blocks +==26337== total heap usage: 5,587,077 allocs, 5,578,842 frees, 8,884,017,068 bytes allocated +==26337== +==26337== LEAK SUMMARY: +==26337== definitely lost: 0 bytes in 0 blocks +==26337== indirectly lost: 0 bytes in 0 blocks +==26337== possibly lost: 0 bytes in 0 blocks +==26337== still reachable: 56 bytes in 3 blocks +==26337== suppressed: 618,241 bytes in 8,232 blocks +==26337== Reachable blocks (those to which a pointer was found) are not shown. +==26337== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26337== +==26337== For lists of detected and suppressed errors, rerun with: -s +==26337== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestDeltaNotchOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDeltaNotchOdeSystem_valgrind.txt new file mode 100644 index 000000000..3cddbda48 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDeltaNotchOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25977== Memcheck, a memory error detector +==25977== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25977== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25977== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDeltaNotchOdeSystem -malloc_debug -malloc_dump -memory_info +==25977== Parent PID: 24057 +==25977== +==25977== +==25977== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25977== Open file descriptor 12: +==25977== at 0xEF9407D: pipe (pipe.c:29) +==25977== by 0x196B507D: ??? +==25977== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25977== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25977== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25977== by 0xD871D38: PetscInitialize (pinit.c:924) +==25977== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25977== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25977== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25977== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25977== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25977== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25977== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25977== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25977== +==25977== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25977== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25977== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25977== by 0xD723822: ??? +==25977== by 0xD72396F: ??? +==25977== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25977== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25977== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25977== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25977== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25977== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25977== by 0xD871D38: PetscInitialize (pinit.c:924) +==25977== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25977== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25977== by 0x123193: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25977== by 0x11E6C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25977== by 0x120CDC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25977== by 0x120BD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25977== by 0x1211EB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25977== by 0x11CEC5: main (TestDeltaNotchOdeSystem.cpp:18) +==25977== +==25977== Open file descriptor 158: +==25977== +==25977== +==25977== Open file descriptor 155: +==25977== +==25977== +==25977== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDeltaNotchOdeSystem_valgrind.txt +==25977== +==25977== +==25977== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25977== +==25977== +==25977== +==25977== HEAP SUMMARY: +==25977== in use at exit: 618,338 bytes in 8,238 blocks +==25977== total heap usage: 53,418 allocs, 45,180 frees, 1,338,943,902 bytes allocated +==25977== +==25977== LEAK SUMMARY: +==25977== definitely lost: 0 bytes in 0 blocks +==25977== indirectly lost: 0 bytes in 0 blocks +==25977== possibly lost: 0 bytes in 0 blocks +==25977== still reachable: 24 bytes in 2 blocks +==25977== suppressed: 618,314 bytes in 8,236 blocks +==25977== Reachable blocks (those to which a pointer was found) are not shown. +==25977== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25977== +==25977== For lists of detected and suppressed errors, rerun with: -s +==25977== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestDiscreteSystemForceCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDiscreteSystemForceCalculator_valgrind.txt new file mode 100644 index 000000000..20b9cc784 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDiscreteSystemForceCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==26115== Memcheck, a memory error detector +==26115== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26115== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26115== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDiscreteSystemForceCalculator -malloc_debug -malloc_dump -memory_info +==26115== Parent PID: 24057 +==26115== +==26115== +==26115== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26115== Open file descriptor 12: +==26115== at 0x10CB807D: pipe (pipe.c:29) +==26115== by 0x196B407D: ??? +==26115== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26115== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26115== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26115== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26115== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26115== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26115== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26115== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26115== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26115== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26115== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26115== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==26115== +==26115== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26115== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==26115== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26115== by 0x104C2822: ??? +==26115== by 0x104C296F: ??? +==26115== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26115== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26115== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26115== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26115== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26115== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26115== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26115== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26115== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26115== by 0x12A32F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26115== by 0x123F2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26115== by 0x1269BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26115== by 0x12685E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26115== by 0x126EF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26115== by 0x122355: main (TestDiscreteSystemForceCalculator.cpp:19) +==26115== +==26115== Open file descriptor 158: +==26115== +==26115== +==26115== Open file descriptor 155: +==26115== +==26115== +==26115== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDiscreteSystemForceCalculator_valgrind.txt +==26115== +==26115== +==26115== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26115== +==26115== +==26115== +==26115== HEAP SUMMARY: +==26115== in use at exit: 618,370 bytes in 8,239 blocks +==26115== total heap usage: 123,057 allocs, 114,818 frees, 1,345,486,802 bytes allocated +==26115== +==26115== LEAK SUMMARY: +==26115== definitely lost: 0 bytes in 0 blocks +==26115== indirectly lost: 0 bytes in 0 blocks +==26115== possibly lost: 0 bytes in 0 blocks +==26115== still reachable: 56 bytes in 3 blocks +==26115== suppressed: 618,314 bytes in 8,236 blocks +==26115== Reachable blocks (those to which a pointer was found) are not shown. +==26115== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26115== +==26115== For lists of detected and suppressed errors, rerun with: -s +==26115== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestDistanceMapCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDistanceMapCalculator_valgrind.txt new file mode 100644 index 000000000..63608c6a9 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDistanceMapCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==24664== Memcheck, a memory error detector +==24664== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24664== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24664== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistanceMapCalculator -malloc_debug -malloc_dump -memory_info +==24664== Parent PID: 24057 +==24664== +==24664== +==24664== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24664== Open file descriptor 12: +==24664== at 0x6D4307D: pipe (pipe.c:29) +==24664== by 0x100CC07D: ??? +==24664== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24664== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x701FD38: PetscInitialize (pinit.c:924) +==24664== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24664== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24664== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24664== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24664== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24664== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24664== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24664== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24664== +==24664== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24664== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24664== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24664== by 0x659D822: ??? +==24664== by 0x659D96F: ??? +==24664== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24664== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24664== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24664== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24664== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24664== by 0x701FD38: PetscInitialize (pinit.c:924) +==24664== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24664== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24664== by 0x121308: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24664== by 0x11C90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24664== by 0x11F030: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24664== by 0x11EED0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24664== by 0x11F567: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24664== by 0x11AD35: main (TestDistanceMapCalculator.cpp:19) +==24664== +==24664== Open file descriptor 158: +==24664== +==24664== +==24664== Open file descriptor 155: +==24664== +==24664== +==24664== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistanceMapCalculator_valgrind.txt +==24664== +==24664== +==24664== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24664== +==24664== +==24664== +==24664== HEAP SUMMARY: +==24664== in use at exit: 620,721 bytes in 8,235 blocks +==24664== total heap usage: 7,651,834 allocs, 7,643,599 frees, 1,604,363,720 bytes allocated +==24664== +==24664== LEAK SUMMARY: +==24664== definitely lost: 0 bytes in 0 blocks +==24664== indirectly lost: 0 bytes in 0 blocks +==24664== possibly lost: 0 bytes in 0 blocks +==24664== still reachable: 2,576 bytes in 3 blocks +==24664== suppressed: 618,145 bytes in 8,232 blocks +==24664== Reachable blocks (those to which a pointer was found) are not shown. +==24664== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24664== +==24664== For lists of detected and suppressed errors, rerun with: -s +==24664== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestDistributedBoxCollection_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDistributedBoxCollection_valgrind.txt new file mode 100644 index 000000000..a0dfbd0d7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDistributedBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24663== Memcheck, a memory error detector +==24663== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24663== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24663== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedBoxCollection -malloc_debug -malloc_dump -memory_info +==24663== Parent PID: 24057 +==24663== +==24663== +==24663== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24663== Open file descriptor 12: +==24663== at 0x823C07D: pipe (pipe.c:29) +==24663== by 0x100CC07D: ??? +==24663== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24663== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24663== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24663== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24663== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24663== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24663== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24663== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24663== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24663== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24663== +==24663== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24663== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24663== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24663== by 0x659D822: ??? +==24663== by 0x659D96F: ??? +==24663== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24663== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24663== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24663== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24663== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24663== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24663== by 0x161C60: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24663== by 0x15BFE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24663== by 0x15F37A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24663== by 0x15F21A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24663== by 0x15F8B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24663== by 0x15A405: main (TestDistributedBoxCollection.cpp:19) +==24663== +==24663== Open file descriptor 158: +==24663== +==24663== +==24663== Open file descriptor 155: +==24663== +==24663== +==24663== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedBoxCollection_valgrind.txt +==24663== +==24663== +==24663== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24663== +==24663== +==24663== +==24663== HEAP SUMMARY: +==24663== in use at exit: 618,242 bytes in 8,238 blocks +==24663== total heap usage: 179,702 allocs, 171,464 frees, 1,440,800,174 bytes allocated +==24663== +==24663== LEAK SUMMARY: +==24663== definitely lost: 0 bytes in 0 blocks +==24663== indirectly lost: 0 bytes in 0 blocks +==24663== possibly lost: 0 bytes in 0 blocks +==24663== still reachable: 24 bytes in 2 blocks +==24663== suppressed: 618,218 bytes in 8,236 blocks +==24663== Reachable blocks (those to which a pointer was found) are not shown. +==24663== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24663== +==24663== For lists of detected and suppressed errors, rerun with: -s +==24663== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestDistributedQuadraticMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDistributedQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..23d6f7ac4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDistributedQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24436== Memcheck, a memory error detector +==24436== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24436== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24436== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24436== Parent PID: 24057 +==24436== +==24436== +==24436== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24436== Open file descriptor 12: +==24436== at 0x6D8507D: pipe (pipe.c:29) +==24436== by 0x100CC07D: ??? +==24436== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24436== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x701FD38: PetscInitialize (pinit.c:924) +==24436== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24436== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24436== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24436== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24436== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24436== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24436== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24436== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24436== +==24436== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24436== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24436== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24436== by 0x659D822: ??? +==24436== by 0x659D96F: ??? +==24436== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24436== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24436== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24436== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24436== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24436== by 0x701FD38: PetscInitialize (pinit.c:924) +==24436== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24436== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24436== by 0x12A04E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24436== by 0x124E9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24436== by 0x127B7A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24436== by 0x127A1A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24436== by 0x1280B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24436== by 0x1232C5: main (TestDistributedQuadraticMesh.cpp:19) +==24436== +==24436== Open file descriptor 158: +==24436== +==24436== +==24436== Open file descriptor 155: +==24436== +==24436== +==24436== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedQuadraticMesh_valgrind.txt +==24436== +==24436== +==24436== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24436== +==24436== +==24436== +==24436== HEAP SUMMARY: +==24436== in use at exit: 618,242 bytes in 8,238 blocks +==24436== total heap usage: 204,142 allocs, 195,904 frees, 1,346,746,989 bytes allocated +==24436== +==24436== LEAK SUMMARY: +==24436== definitely lost: 0 bytes in 0 blocks +==24436== indirectly lost: 0 bytes in 0 blocks +==24436== possibly lost: 0 bytes in 0 blocks +==24436== still reachable: 24 bytes in 2 blocks +==24436== suppressed: 618,218 bytes in 8,236 blocks +==24436== Reachable blocks (those to which a pointer was found) are not shown. +==24436== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24436== +==24436== For lists of detected and suppressed errors, rerun with: -s +==24436== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestDistributedTetrahedralMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDistributedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..d88c3eef5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDistributedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24437== Memcheck, a memory error detector +==24437== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24437== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24437== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24437== Parent PID: 24057 +==24437== +==24437== +==24437== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24437== Open file descriptor 12: +==24437== at 0x823C07D: pipe (pipe.c:29) +==24437== by 0x100CC07D: ??? +==24437== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24437== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24437== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24437== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24437== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24437== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24437== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24437== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24437== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24437== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24437== +==24437== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24437== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24437== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24437== by 0x659D822: ??? +==24437== by 0x659D96F: ??? +==24437== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24437== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24437== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24437== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24437== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24437== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24437== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24437== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24437== by 0x1464DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24437== by 0x13EB23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24437== by 0x141FCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24437== by 0x141E6E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24437== by 0x142505: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24437== by 0x13CE05: main (TestDistributedTetrahedralMesh.cpp:19) +==24437== +==24437== Open file descriptor 158: +==24437== +==24437== +==24437== Open file descriptor 155: +==24437== +==24437== +==24437== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedTetrahedralMesh_valgrind.txt +==24437== +==24437== +==24437== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24437== +==24437== +==24437== +==24437== HEAP SUMMARY: +==24437== in use at exit: 620,721 bytes in 8,235 blocks +==24437== total heap usage: 3,378,468 allocs, 3,370,233 frees, 1,457,881,854 bytes allocated +==24437== +==24437== LEAK SUMMARY: +==24437== definitely lost: 0 bytes in 0 blocks +==24437== indirectly lost: 0 bytes in 0 blocks +==24437== possibly lost: 0 bytes in 0 blocks +==24437== still reachable: 2,576 bytes in 3 blocks +==24437== suppressed: 618,145 bytes in 8,232 blocks +==24437== Reachable blocks (those to which a pointer was found) are not shown. +==24437== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24437== +==24437== For lists of detected and suppressed errors, rerun with: -s +==24437== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestDistributedVector_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDistributedVector_valgrind.txt new file mode 100644 index 000000000..1f319963e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDistributedVector_valgrind.txt @@ -0,0 +1,73 @@ +==24117== Memcheck, a memory error detector +==24117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24117== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info +==24117== Parent PID: 24057 +==24117== +==24117== +==24117== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24117== Open file descriptor 12: +==24117== at 0x607407D: pipe (pipe.c:29) +==24117== by 0xAEA507D: ??? +==24117== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24117== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24117== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24117== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24117== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24117== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24117== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24117== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24117== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24117== by 0x123365: main (TestDistributedVector.cpp:19) +==24117== +==24117== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24117== at 0x6078A1C: __open_nocancel (open64_nocancel.c:39) +==24117== by 0x5FFCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24117== by 0x493A822: ??? +==24117== by 0x493A96F: ??? +==24117== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24117== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24117== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24117== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24117== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24117== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24117== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24117== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24117== by 0x129F94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24117== by 0x124F49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24117== by 0x127BA8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24117== by 0x127A48: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24117== by 0x1280DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24117== by 0x123365: main (TestDistributedVector.cpp:19) +==24117== +==24117== Open file descriptor 158: +==24117== +==24117== +==24117== Open file descriptor 155: +==24117== +==24117== +==24117== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDistributedVector_valgrind.txt +==24117== +==24117== +==24117== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24117== +==24117== +==24117== +==24117== HEAP SUMMARY: +==24117== in use at exit: 617,874 bytes in 8,238 blocks +==24117== total heap usage: 46,125 allocs, 37,887 frees, 1,338,418,762 bytes allocated +==24117== +==24117== LEAK SUMMARY: +==24117== definitely lost: 0 bytes in 0 blocks +==24117== indirectly lost: 0 bytes in 0 blocks +==24117== possibly lost: 0 bytes in 0 blocks +==24117== still reachable: 24 bytes in 2 blocks +==24117== suppressed: 617,850 bytes in 8,236 blocks +==24117== Reachable blocks (those to which a pointer was found) are not shown. +==24117== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24117== +==24117== For lists of detected and suppressed errors, rerun with: -s +==24117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestDivisionBiasTrackingModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDivisionBiasTrackingModifier_valgrind.txt new file mode 100644 index 000000000..d5652c73b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDivisionBiasTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26338== Memcheck, a memory error detector +==26338== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26338== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26338== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestDivisionBiasTrackingModifier -malloc_debug -malloc_dump -memory_info +==26338== Parent PID: 24057 +==26338== +==26338== +==26338== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26338== Open file descriptor 12: +==26338== at 0xF84307D: pipe (pipe.c:29) +==26338== by 0x196B407D: ??? +==26338== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26338== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26338== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26338== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26338== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26338== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26338== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26338== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26338== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26338== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26338== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26338== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26338== +==26338== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26338== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26338== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26338== by 0xF144822: ??? +==26338== by 0xF14496F: ??? +==26338== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26338== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26338== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26338== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26338== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26338== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26338== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26338== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26338== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26338== by 0x1FE694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26338== by 0x1F67DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26338== by 0x1F9F72: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26338== by 0x1F9E6D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26338== by 0x1FA481: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26338== by 0x1F4FD5: main (TestDivisionBiasTrackingModifier.cpp:18) +==26338== +==26338== Open file descriptor 158: +==26338== +==26338== +==26338== Open file descriptor 155: +==26338== +==26338== +==26338== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDivisionBiasTrackingModifier_valgrind.txt +==26338== +==26338== +==26338== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26338== +==26338== +==26338== +==26338== HEAP SUMMARY: +==26338== in use at exit: 618,297 bytes in 8,235 blocks +==26338== total heap usage: 7,634,498 allocs, 7,626,263 frees, 2,727,040,385 bytes allocated +==26338== +==26338== LEAK SUMMARY: +==26338== definitely lost: 0 bytes in 0 blocks +==26338== indirectly lost: 0 bytes in 0 blocks +==26338== possibly lost: 0 bytes in 0 blocks +==26338== still reachable: 56 bytes in 3 blocks +==26338== suppressed: 618,241 bytes in 8,232 blocks +==26338== Reachable blocks (those to which a pointer was found) are not shown. +==26338== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26338== +==26338== For lists of detected and suppressed errors, rerun with: -s +==26338== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestDynamicVentilation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDynamicVentilation_valgrind.txt new file mode 100644 index 000000000..adcdc3951 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDynamicVentilation_valgrind.txt @@ -0,0 +1,73 @@ +==41411== Memcheck, a memory error detector +==41411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41411== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestDynamicVentilation -malloc_debug -malloc_dump -memory_info +==41411== Parent PID: 24057 +==41411== +==41411== +==41411== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41411== Open file descriptor 12: +==41411== at 0x51FE07D: pipe (pipe.c:29) +==41411== by 0x107AC07D: ??? +==41411== by 0xBA564CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41411== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41411== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41411== by 0x5409D38: PetscInitialize (pinit.c:924) +==41411== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41411== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41411== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41411== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41411== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41411== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41411== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41411== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41411== +==41411== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41411== at 0x5202A1C: __open_nocancel (open64_nocancel.c:39) +==41411== by 0x5186BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41411== by 0x4A58822: ??? +==41411== by 0x4A5896F: ??? +==41411== by 0xBAFB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41411== by 0xBAFB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41411== by 0xBAB1922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41411== by 0xBA562DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41411== by 0x6779418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41411== by 0x6712D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41411== by 0x5409D38: PetscInitialize (pinit.c:924) +==41411== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41411== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41411== by 0x11807E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41411== by 0x11378D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41411== by 0x1160AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41411== by 0x115F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41411== by 0x1165E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41411== by 0x111BB5: main (TestDynamicVentilation.cpp:19) +==41411== +==41411== Open file descriptor 158: +==41411== +==41411== +==41411== Open file descriptor 155: +==41411== +==41411== +==41411== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicVentilation_valgrind.txt +==41411== +==41411== +==41411== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41411== +==41411== +==41411== +==41411== HEAP SUMMARY: +==41411== in use at exit: 618,338 bytes in 8,238 blocks +==41411== total heap usage: 74,108 allocs, 65,870 frees, 1,350,507,218 bytes allocated +==41411== +==41411== LEAK SUMMARY: +==41411== definitely lost: 0 bytes in 0 blocks +==41411== indirectly lost: 0 bytes in 0 blocks +==41411== possibly lost: 0 bytes in 0 blocks +==41411== still reachable: 24 bytes in 2 blocks +==41411== suppressed: 618,314 bytes in 8,236 blocks +==41411== Reachable blocks (those to which a pointer was found) are not shown. +==41411== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41411== +==41411== For lists of detected and suppressed errors, rerun with: -s +==41411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestDynamicallyLoadedCellModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestDynamicallyLoadedCellModels_valgrind.txt new file mode 100644 index 000000000..1071228ac --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestDynamicallyLoadedCellModels_valgrind.txt @@ -0,0 +1,73 @@ +==42030== Memcheck, a memory error detector +==42030== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42030== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42030== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestDynamicallyLoadedCellModels -malloc_debug -malloc_dump -memory_info +==42030== Parent PID: 24057 +==42030== +==42030== +==42030== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42030== Open file descriptor 12: +==42030== at 0x882407D: pipe (pipe.c:29) +==42030== by 0x1432F07D: ??? +==42030== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42030== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42030== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42030== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==42030== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42030== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42030== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42030== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42030== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42030== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42030== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42030== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==42030== +==42030== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42030== at 0x8828A1C: __open_nocancel (open64_nocancel.c:39) +==42030== by 0x87ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42030== by 0x8492822: ??? +==42030== by 0x849296F: ??? +==42030== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42030== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42030== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42030== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42030== by 0x9F1F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42030== by 0x9EB8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42030== by 0x8BAFD38: PetscInitialize (pinit.c:924) +==42030== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42030== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42030== by 0x123164: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42030== by 0x11E28F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42030== by 0x120CE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42030== by 0x120B88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42030== by 0x12121F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42030== by 0x119055: main (TestDynamicallyLoadedCellModels.cpp:19) +==42030== +==42030== Open file descriptor 158: +==42030== +==42030== +==42030== Open file descriptor 155: +==42030== +==42030== +==42030== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestDynamicallyLoadedCellModels_valgrind.txt +==42030== +==42030== +==42030== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42030== +==42030== +==42030== +==42030== HEAP SUMMARY: +==42030== in use at exit: 632,422 bytes in 8,265 blocks +==42030== total heap usage: 958,950 allocs, 950,685 frees, 1,914,139,836 bytes allocated +==42030== +==42030== LEAK SUMMARY: +==42030== definitely lost: 0 bytes in 0 blocks +==42030== indirectly lost: 0 bytes in 0 blocks +==42030== possibly lost: 0 bytes in 0 blocks +==42030== still reachable: 14,165 bytes in 33 blocks +==42030== suppressed: 618,257 bytes in 8,232 blocks +==42030== Reachable blocks (those to which a pointer was found) are not shown. +==42030== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42030== +==42030== For lists of detected and suppressed errors, rerun with: -s +==42030== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestEdgeInteriorSrn_valgrind.txt b/log-files/2025-02-12_21-17-58/TestEdgeInteriorSrn_valgrind.txt new file mode 100644 index 000000000..5850fd072 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestEdgeInteriorSrn_valgrind.txt @@ -0,0 +1,73 @@ +==25565== Memcheck, a memory error detector +==25565== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25565== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25565== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEdgeInteriorSrn -malloc_debug -malloc_dump -memory_info +==25565== Parent PID: 24057 +==25565== +==25565== +==25565== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25565== Open file descriptor 12: +==25565== at 0xF84307D: pipe (pipe.c:29) +==25565== by 0x196B407D: ??? +==25565== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25565== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25565== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25565== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25565== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25565== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25565== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25565== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25565== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25565== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25565== +==25565== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25565== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==25565== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25565== by 0xF144822: ??? +==25565== by 0xF14496F: ??? +==25565== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25565== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25565== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25565== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25565== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25565== by 0x1012FD38: PetscInitialize (pinit.c:924) +==25565== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25565== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25565== by 0x130B3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25565== by 0x12B59D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25565== by 0x12E2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25565== by 0x12E14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25565== by 0x12E7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25565== by 0x1299C5: main (TestEdgeInteriorSrn.cpp:19) +==25565== +==25565== Open file descriptor 158: +==25565== +==25565== +==25565== Open file descriptor 155: +==25565== +==25565== +==25565== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdgeInteriorSrn_valgrind.txt +==25565== +==25565== +==25565== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25565== +==25565== +==25565== +==25565== HEAP SUMMARY: +==25565== in use at exit: 618,386 bytes in 8,240 blocks +==25565== total heap usage: 90,090 allocs, 81,850 frees, 1,342,349,560 bytes allocated +==25565== +==25565== LEAK SUMMARY: +==25565== definitely lost: 0 bytes in 0 blocks +==25565== indirectly lost: 0 bytes in 0 blocks +==25565== possibly lost: 0 bytes in 0 blocks +==25565== still reachable: 72 bytes in 4 blocks +==25565== suppressed: 618,314 bytes in 8,236 blocks +==25565== Reachable blocks (those to which a pointer was found) are not shown. +==25565== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25565== +==25565== For lists of detected and suppressed errors, rerun with: -s +==25565== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestEdge_valgrind.txt b/log-files/2025-02-12_21-17-58/TestEdge_valgrind.txt new file mode 100644 index 000000000..b7fe8ab4f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestEdge_valgrind.txt @@ -0,0 +1,73 @@ +==24559== Memcheck, a memory error detector +==24559== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24559== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24559== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info +==24559== Parent PID: 24057 +==24559== +==24559== +==24559== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24559== Open file descriptor 12: +==24559== at 0x815307D: pipe (pipe.c:29) +==24559== by 0x100CC07D: ??? +==24559== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24559== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24559== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24559== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24559== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24559== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24559== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24559== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24559== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24559== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24559== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24559== by 0x157B05: main (TestEdge.cpp:18) +==24559== +==24559== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24559== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24559== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24559== by 0x659D822: ??? +==24559== by 0x659D96F: ??? +==24559== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24559== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24559== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24559== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24559== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24559== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24559== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24559== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24559== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24559== by 0x15EC55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24559== by 0x15930F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24559== by 0x15C29A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24559== by 0x15C196: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24559== by 0x15C7A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24559== by 0x157B05: main (TestEdge.cpp:18) +==24559== +==24559== Open file descriptor 158: +==24559== +==24559== +==24559== Open file descriptor 155: +==24559== +==24559== +==24559== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEdge_valgrind.txt +==24559== +==24559== +==24559== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24559== +==24559== +==24559== +==24559== HEAP SUMMARY: +==24559== in use at exit: 618,242 bytes in 8,238 blocks +==24559== total heap usage: 48,027 allocs, 39,789 frees, 1,338,477,063 bytes allocated +==24559== +==24559== LEAK SUMMARY: +==24559== definitely lost: 0 bytes in 0 blocks +==24559== indirectly lost: 0 bytes in 0 blocks +==24559== possibly lost: 0 bytes in 0 blocks +==24559== still reachable: 24 bytes in 2 blocks +==24559== suppressed: 618,218 bytes in 8,236 blocks +==24559== Reachable blocks (those to which a pointer was found) are not shown. +==24559== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24559== +==24559== For lists of detected and suppressed errors, rerun with: -s +==24559== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestElectroMechanicsExactSolution_valgrind.txt b/log-files/2025-02-12_21-17-58/TestElectroMechanicsExactSolution_valgrind.txt new file mode 100644 index 000000000..0ed12206b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestElectroMechanicsExactSolution_valgrind.txt @@ -0,0 +1,73 @@ +==43628== Memcheck, a memory error detector +==43628== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43628== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43628== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsExactSolution -malloc_debug -malloc_dump -memory_info +==43628== Parent PID: 24057 +==43628== +==43628== +==43628== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43628== Open file descriptor 12: +==43628== at 0xAAF907D: pipe (pipe.c:29) +==43628== by 0x1432F07D: ??? +==43628== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43628== by 0xA300418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43628== by 0xA299D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43628== by 0xAD02D38: PetscInitialize (pinit.c:924) +==43628== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43628== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43628== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43628== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43628== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43628== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43628== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43628== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43628== +==43628== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43628== at 0xAAFDA1C: __open_nocancel (open64_nocancel.c:39) +==43628== by 0xAA81BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43628== by 0xA202822: ??? +==43628== by 0xA20296F: ??? +==43628== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43628== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43628== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43628== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43628== by 0xA300418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43628== by 0xA299D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43628== by 0xAD02D38: PetscInitialize (pinit.c:924) +==43628== by 0xA1C21D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43628== by 0xA1C2227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43628== by 0x12D4D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43628== by 0x12824F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43628== by 0x12ADF6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43628== by 0x12ACF1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43628== by 0x12B305: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43628== by 0x126095: main (TestElectroMechanicsExactSolution.cpp:18) +==43628== +==43628== Open file descriptor 158: +==43628== +==43628== +==43628== Open file descriptor 155: +==43628== +==43628== +==43628== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsExactSolution_valgrind.txt +==43628== +==43628== +==43628== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43628== +==43628== +==43628== +==43628== HEAP SUMMARY: +==43628== in use at exit: 618,761 bytes in 8,244 blocks +==43628== total heap usage: 1,357,213 allocs, 1,348,969 frees, 1,489,734,969 bytes allocated +==43628== +==43628== LEAK SUMMARY: +==43628== definitely lost: 0 bytes in 0 blocks +==43628== indirectly lost: 0 bytes in 0 blocks +==43628== possibly lost: 0 bytes in 0 blocks +==43628== still reachable: 24 bytes in 2 blocks +==43628== suppressed: 618,737 bytes in 8,242 blocks +==43628== Reachable blocks (those to which a pointer was found) are not shown. +==43628== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43628== +==43628== For lists of detected and suppressed errors, rerun with: -s +==43628== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestElectroMechanicsProblemDefinition_valgrind.txt b/log-files/2025-02-12_21-17-58/TestElectroMechanicsProblemDefinition_valgrind.txt new file mode 100644 index 000000000..7cc03b295 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestElectroMechanicsProblemDefinition_valgrind.txt @@ -0,0 +1,36 @@ +==43620== Memcheck, a memory error detector +==43620== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43620== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43620== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectroMechanicsProblemDefinition -malloc_debug -malloc_dump -memory_info +==43620== Parent PID: 24057 +==43620== +==43620== +==43620== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43620== Open file descriptor 158: +==43620== +==43620== +==43620== Open file descriptor 155: +==43620== +==43620== +==43620== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectroMechanicsProblemDefinition_valgrind.txt +==43620== +==43620== +==43620== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43620== +==43620== +==43620== +==43620== HEAP SUMMARY: +==43620== in use at exit: 24 bytes in 2 blocks +==43620== total heap usage: 13,908 allocs, 13,906 frees, 1,516,411 bytes allocated +==43620== +==43620== LEAK SUMMARY: +==43620== definitely lost: 0 bytes in 0 blocks +==43620== indirectly lost: 0 bytes in 0 blocks +==43620== possibly lost: 0 bytes in 0 blocks +==43620== still reachable: 24 bytes in 2 blocks +==43620== suppressed: 0 bytes in 0 blocks +==43620== Reachable blocks (those to which a pointer was found) are not shown. +==43620== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43620== +==43620== For lists of detected and suppressed errors, rerun with: -s +==43620== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestElectrodes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestElectrodes_valgrind.txt new file mode 100644 index 000000000..5857f7b17 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestElectrodes_valgrind.txt @@ -0,0 +1,73 @@ +==44128== Memcheck, a memory error detector +==44128== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44128== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44128== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestElectrodes -malloc_debug -malloc_dump -memory_info +==44128== Parent PID: 24057 +==44128== +==44128== +==44128== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44128== Open file descriptor 12: +==44128== at 0xBD6B07D: pipe (pipe.c:29) +==44128== by 0x1432F07D: ??? +==44128== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44128== by 0xB659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44128== by 0xB5F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44128== by 0xA2C6D38: PetscInitialize (pinit.c:924) +==44128== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44128== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44128== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44128== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44128== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44128== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44128== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44128== by 0x114C15: main (TestElectrodes.cpp:19) +==44128== +==44128== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44128== at 0xBD6FA1C: __open_nocancel (open64_nocancel.c:39) +==44128== by 0xBCF3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44128== by 0xB55B822: ??? +==44128== by 0xB55B96F: ??? +==44128== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44128== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44128== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44128== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44128== by 0xB659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44128== by 0xB5F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44128== by 0xA2C6D38: PetscInitialize (pinit.c:924) +==44128== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44128== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44128== by 0x11B15C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44128== by 0x1167ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44128== by 0x118FC6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44128== by 0x118E66: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44128== by 0x1194FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44128== by 0x114C15: main (TestElectrodes.cpp:19) +==44128== +==44128== Open file descriptor 158: +==44128== +==44128== +==44128== Open file descriptor 155: +==44128== +==44128== +==44128== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElectrodes_valgrind.txt +==44128== +==44128== +==44128== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44128== +==44128== +==44128== +==44128== HEAP SUMMARY: +==44128== in use at exit: 618,354 bytes in 8,238 blocks +==44128== total heap usage: 264,948 allocs, 256,710 frees, 1,364,215,463 bytes allocated +==44128== +==44128== LEAK SUMMARY: +==44128== definitely lost: 0 bytes in 0 blocks +==44128== indirectly lost: 0 bytes in 0 blocks +==44128== possibly lost: 0 bytes in 0 blocks +==44128== still reachable: 24 bytes in 2 blocks +==44128== suppressed: 618,330 bytes in 8,236 blocks +==44128== Reachable blocks (those to which a pointer was found) are not shown. +==44128== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44128== +==44128== For lists of detected and suppressed errors, rerun with: -s +==44128== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestElementAttributes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestElementAttributes_valgrind.txt new file mode 100644 index 000000000..96641b120 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestElementAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24464== Memcheck, a memory error detector +==24464== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24464== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24464== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info +==24464== Parent PID: 24057 +==24464== +==24464== +==24464== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24464== Open file descriptor 12: +==24464== at 0x695907D: pipe (pipe.c:29) +==24464== by 0x100CC07D: ??? +==24464== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24464== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24464== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24464== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24464== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24464== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24464== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24464== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24464== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24464== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24464== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24464== by 0x126145: main (TestElementAttributes.cpp:19) +==24464== +==24464== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24464== at 0x695DA1C: __open_nocancel (open64_nocancel.c:39) +==24464== by 0x68E1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24464== by 0x659D822: ??? +==24464== by 0x659D96F: ??? +==24464== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24464== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24464== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24464== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24464== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24464== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24464== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24464== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24464== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24464== by 0x12CF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24464== by 0x127D29: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24464== by 0x12A996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24464== by 0x12A836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24464== by 0x12AECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24464== by 0x126145: main (TestElementAttributes.cpp:19) +==24464== +==24464== Open file descriptor 158: +==24464== +==24464== +==24464== Open file descriptor 155: +==24464== +==24464== +==24464== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElementAttributes_valgrind.txt +==24464== +==24464== +==24464== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24464== +==24464== +==24464== +==24464== HEAP SUMMARY: +==24464== in use at exit: 618,242 bytes in 8,238 blocks +==24464== total heap usage: 47,475 allocs, 39,237 frees, 1,338,443,295 bytes allocated +==24464== +==24464== LEAK SUMMARY: +==24464== definitely lost: 0 bytes in 0 blocks +==24464== indirectly lost: 0 bytes in 0 blocks +==24464== possibly lost: 0 bytes in 0 blocks +==24464== still reachable: 24 bytes in 2 blocks +==24464== suppressed: 618,218 bytes in 8,236 blocks +==24464== Reachable blocks (those to which a pointer was found) are not shown. +==24464== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24464== +==24464== For lists of detected and suppressed errors, rerun with: -s +==24464== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestElement_valgrind.txt b/log-files/2025-02-12_21-17-58/TestElement_valgrind.txt new file mode 100644 index 000000000..5a17e2aae --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestElement_valgrind.txt @@ -0,0 +1,73 @@ +==24463== Memcheck, a memory error detector +==24463== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24463== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24463== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElement -malloc_debug -malloc_dump -memory_info +==24463== Parent PID: 24057 +==24463== +==24463== +==24463== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24463== Open file descriptor 12: +==24463== at 0x6D4307D: pipe (pipe.c:29) +==24463== by 0x100CC07D: ??? +==24463== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24463== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24463== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24463== by 0x701FD38: PetscInitialize (pinit.c:924) +==24463== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24463== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24463== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24463== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24463== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24463== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24463== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24463== by 0x124855: main (TestElement.cpp:19) +==24463== +==24463== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24463== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24463== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24463== by 0x659D822: ??? +==24463== by 0x659D96F: ??? +==24463== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24463== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24463== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24463== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24463== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24463== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24463== by 0x701FD38: PetscInitialize (pinit.c:924) +==24463== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24463== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24463== by 0x12B5A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24463== by 0x12642D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24463== by 0x12932C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24463== by 0x1291CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24463== by 0x129863: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24463== by 0x124855: main (TestElement.cpp:19) +==24463== +==24463== Open file descriptor 158: +==24463== +==24463== +==24463== Open file descriptor 155: +==24463== +==24463== +==24463== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestElement_valgrind.txt +==24463== +==24463== +==24463== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24463== +==24463== +==24463== +==24463== HEAP SUMMARY: +==24463== in use at exit: 618,242 bytes in 8,238 blocks +==24463== total heap usage: 65,902 allocs, 57,664 frees, 1,340,510,053 bytes allocated +==24463== +==24463== LEAK SUMMARY: +==24463== definitely lost: 0 bytes in 0 blocks +==24463== indirectly lost: 0 bytes in 0 blocks +==24463== possibly lost: 0 bytes in 0 blocks +==24463== still reachable: 24 bytes in 2 blocks +==24463== suppressed: 618,218 bytes in 8,236 blocks +==24463== Reachable blocks (those to which a pointer was found) are not shown. +==24463== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24463== +==24463== For lists of detected and suppressed errors, rerun with: -s +==24463== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..f6093e935 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25589== Memcheck, a memory error detector +==25589== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25589== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25589== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25589== Parent PID: 24057 +==25589== +==25589== +==25589== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25589== Open file descriptor 12: +==25589== at 0x1109707D: pipe (pipe.c:29) +==25589== by 0x196B407D: ??? +==25589== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25589== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25589== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25589== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25589== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25589== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25589== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25589== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25589== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25589== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25589== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25589== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25589== +==25589== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25589== at 0x1109BA1C: __open_nocancel (open64_nocancel.c:39) +==25589== by 0x1101FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25589== by 0xF4E1822: ??? +==25589== by 0xF4E196F: ??? +==25589== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25589== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25589== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25589== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25589== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25589== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25589== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25589== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25589== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25589== by 0x13AB97: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25589== by 0x135563: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25589== by 0x138174: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25589== by 0x13806F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25589== by 0x138683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25589== by 0x133D65: main (TestEllipticBoxDomainPdeModifier.cpp:18) +==25589== +==25589== Open file descriptor 158: +==25589== +==25589== +==25589== Open file descriptor 155: +==25589== +==25589== +==25589== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticBoxDomainPdeModifier_valgrind.txt +==25589== +==25589== +==25589== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25589== +==25589== +==25589== +==25589== HEAP SUMMARY: +==25589== in use at exit: 618,297 bytes in 8,235 blocks +==25589== total heap usage: 5,616,019 allocs, 5,607,784 frees, 1,928,661,938 bytes allocated +==25589== +==25589== LEAK SUMMARY: +==25589== definitely lost: 0 bytes in 0 blocks +==25589== indirectly lost: 0 bytes in 0 blocks +==25589== possibly lost: 0 bytes in 0 blocks +==25589== still reachable: 56 bytes in 3 blocks +==25589== suppressed: 618,241 bytes in 8,232 blocks +==25589== Reachable blocks (those to which a pointer was found) are not shown. +==25589== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25589== +==25589== For lists of detected and suppressed errors, rerun with: -s +==25589== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..6efc4967f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25597== Memcheck, a memory error detector +==25597== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25597== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25597== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25597== Parent PID: 24057 +==25597== +==25597== +==25597== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25597== Open file descriptor 12: +==25597== at 0x1117E07D: pipe (pipe.c:29) +==25597== by 0x196B407D: ??? +==25597== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25597== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25597== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25597== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25597== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25597== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25597== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25597== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25597== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25597== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25597== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25597== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25597== +==25597== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25597== at 0x11182A1C: __open_nocancel (open64_nocancel.c:39) +==25597== by 0x11106BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25597== by 0xF4E1822: ??? +==25597== by 0xF4E196F: ??? +==25597== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25597== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25597== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25597== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25597== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25597== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25597== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25597== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25597== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25597== by 0x13FC51: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25597== by 0x139D3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25597== by 0x13CDD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25597== by 0x13CC74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25597== by 0x13D30B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25597== by 0x138165: main (TestEllipticGrowingDomainPdeModifier.cpp:19) +==25597== +==25597== Open file descriptor 158: +==25597== +==25597== +==25597== Open file descriptor 155: +==25597== +==25597== +==25597== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestEllipticGrowingDomainPdeModifier_valgrind.txt +==25597== +==25597== +==25597== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25597== +==25597== +==25597== +==25597== HEAP SUMMARY: +==25597== in use at exit: 618,370 bytes in 8,239 blocks +==25597== total heap usage: 1,610,272 allocs, 1,602,033 frees, 1,438,381,046 bytes allocated +==25597== +==25597== LEAK SUMMARY: +==25597== definitely lost: 0 bytes in 0 blocks +==25597== indirectly lost: 0 bytes in 0 blocks +==25597== possibly lost: 0 bytes in 0 blocks +==25597== still reachable: 56 bytes in 3 blocks +==25597== suppressed: 618,314 bytes in 8,236 blocks +==25597== Reachable blocks (those to which a pointer was found) are not shown. +==25597== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25597== +==25597== For lists of detected and suppressed errors, rerun with: -s +==25597== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestException_valgrind.txt b/log-files/2025-02-12_21-17-58/TestException_valgrind.txt new file mode 100644 index 000000000..29e72f7f2 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestException_valgrind.txt @@ -0,0 +1,73 @@ +==24118== Memcheck, a memory error detector +==24118== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24118== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24118== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestException -malloc_debug -malloc_dump -memory_info +==24118== Parent PID: 24057 +==24118== +==24118== +==24118== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24118== Open file descriptor 12: +==24118== at 0x4CB207D: pipe (pipe.c:29) +==24118== by 0xAEA507D: ??? +==24118== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24118== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24118== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24118== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24118== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24118== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24118== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24118== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24118== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24118== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24118== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24118== by 0x10E9D5: main (TestException.cpp:19) +==24118== +==24118== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24118== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24118== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24118== by 0x493A822: ??? +==24118== by 0x493A96F: ??? +==24118== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24118== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24118== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24118== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24118== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24118== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24118== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24118== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24118== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24118== by 0x114E36: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24118== by 0x1105AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24118== by 0x112ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24118== by 0x112D78: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24118== by 0x11340F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24118== by 0x10E9D5: main (TestException.cpp:19) +==24118== +==24118== Open file descriptor 158: +==24118== +==24118== +==24118== Open file descriptor 155: +==24118== +==24118== +==24118== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestException_valgrind.txt +==24118== +==24118== +==24118== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24118== +==24118== +==24118== +==24118== HEAP SUMMARY: +==24118== in use at exit: 617,874 bytes in 8,238 blocks +==24118== total heap usage: 45,182 allocs, 36,944 frees, 1,338,187,336 bytes allocated +==24118== +==24118== LEAK SUMMARY: +==24118== definitely lost: 0 bytes in 0 blocks +==24118== indirectly lost: 0 bytes in 0 blocks +==24118== possibly lost: 0 bytes in 0 blocks +==24118== still reachable: 24 bytes in 2 blocks +==24118== suppressed: 617,850 bytes in 8,236 blocks +==24118== Reachable blocks (those to which a pointer was found) are not shown. +==24118== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24118== +==24118== For lists of detected and suppressed errors, rerun with: -s +==24118== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestExecutableSupport_valgrind.txt b/log-files/2025-02-12_21-17-58/TestExecutableSupport_valgrind.txt new file mode 100644 index 000000000..14fc2c803 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestExecutableSupport_valgrind.txt @@ -0,0 +1,79 @@ +==24119== Memcheck, a memory error detector +==24119== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24119== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24119== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info +==24119== Parent PID: 24057 +==24119== +==24119== +==24119== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24119== Open file descriptor 12: +==24119== at 0x4CB207D: pipe (pipe.c:29) +==24119== by 0xAEA507D: ??? +==24119== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24119== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24119== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24119== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24119== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24119== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24119== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24119== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24119== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24119== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24119== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24119== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24119== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24119== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24119== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24119== +==24119== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24119== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24119== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24119== by 0x493A822: ??? +==24119== by 0x493A96F: ??? +==24119== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24119== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24119== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24119== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24119== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24119== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24119== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24119== by 0x48D632C: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) +==24119== by 0x48D7EC0: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:455) +==24119== by 0x1120FD: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) +==24119== by 0x1124BC: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) +==24119== by 0x10D6CA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) +==24119== by 0x1103DA: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) +==24119== by 0x1102BF: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) +==24119== by 0x110165: CxxTest::TestRunner::runWorld() (TestRunner.h:46) +==24119== by 0x110027: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24119== by 0x11063B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24119== by 0x10C695: main (TestExecutableSupport.cpp:18) +==24119== +==24119== Open file descriptor 158: +==24119== +==24119== +==24119== Open file descriptor 155: +==24119== +==24119== +==24119== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExecutableSupport_valgrind.txt +==24119== +==24119== +==24119== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24119== +==24119== +==24119== +==24119== HEAP SUMMARY: +==24119== in use at exit: 617,874 bytes in 8,238 blocks +==24119== total heap usage: 45,222 allocs, 36,984 frees, 1,338,262,853 bytes allocated +==24119== +==24119== LEAK SUMMARY: +==24119== definitely lost: 0 bytes in 0 blocks +==24119== indirectly lost: 0 bytes in 0 blocks +==24119== possibly lost: 0 bytes in 0 blocks +==24119== still reachable: 24 bytes in 2 blocks +==24119== suppressed: 617,850 bytes in 8,236 blocks +==24119== Reachable blocks (those to which a pointer was found) are not shown. +==24119== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24119== +==24119== For lists of detected and suppressed errors, rerun with: -s +==24119== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestExplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestExplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..82a8f750e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestExplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43655== Memcheck, a memory error detector +==43655== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43655== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43655== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43655== Parent PID: 24057 +==43655== +==43655== +==43655== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43655== Open file descriptor 12: +==43655== at 0xAB1D07D: pipe (pipe.c:29) +==43655== by 0x1433107D: ??? +==43655== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43655== by 0xC096418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43655== by 0xC02FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43655== by 0xAD26D38: PetscInitialize (pinit.c:924) +==43655== by 0xA31D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43655== by 0xA31D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43655== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43655== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43655== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43655== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43655== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43655== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43655== +==43655== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43655== at 0xAB21A1C: __open_nocancel (open64_nocancel.c:39) +==43655== by 0xAAA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43655== by 0xA35D822: ??? +==43655== by 0xA35D96F: ??? +==43655== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43655== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43655== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43655== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43655== by 0xC096418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43655== by 0xC02FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43655== by 0xAD26D38: PetscInitialize (pinit.c:924) +==43655== by 0xA31D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43655== by 0xA31D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43655== by 0x12399A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43655== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43655== by 0x1218A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43655== by 0x121746: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43655== by 0x121DDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43655== by 0x11D175: main (TestExplicitCardiacMechanicsSolver.cpp:19) +==43655== +==43655== Open file descriptor 158: +==43655== +==43655== +==43655== Open file descriptor 155: +==43655== +==43655== +==43655== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExplicitCardiacMechanicsSolver_valgrind.txt +==43655== +==43655== +==43655== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43655== +==43655== +==43655== +==43655== HEAP SUMMARY: +==43655== in use at exit: 618,281 bytes in 8,234 blocks +==43655== total heap usage: 1,798,672 allocs, 1,790,438 frees, 1,540,123,138 bytes allocated +==43655== +==43655== LEAK SUMMARY: +==43655== definitely lost: 0 bytes in 0 blocks +==43655== indirectly lost: 0 bytes in 0 blocks +==43655== possibly lost: 0 bytes in 0 blocks +==43655== still reachable: 24 bytes in 2 blocks +==43655== suppressed: 618,257 bytes in 8,232 blocks +==43655== Reachable blocks (those to which a pointer was found) are not shown. +==43655== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43655== +==43655== For lists of detected and suppressed errors, rerun with: -s +==43655== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestExtendedBidomainProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..696a33c27 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41619== Memcheck, a memory error detector +==41619== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41619== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41619== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41619== Parent PID: 24057 +==41619== +==41619== +==41619== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41619== Open file descriptor 12: +==41619== at 0xA99407D: pipe (pipe.c:29) +==41619== by 0x1432F07D: ??? +==41619== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41619== by 0xA282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41619== by 0xA21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41619== by 0xAD1FD38: PetscInitialize (pinit.c:924) +==41619== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41619== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41619== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41619== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41619== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41619== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41619== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41619== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41619== +==41619== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41619== at 0xA998A1C: __open_nocancel (open64_nocancel.c:39) +==41619== by 0xA91CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41619== by 0xA184822: ??? +==41619== by 0xA18496F: ??? +==41619== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41619== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41619== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41619== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41619== by 0xA282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41619== by 0xA21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41619== by 0xAD1FD38: PetscInitialize (pinit.c:924) +==41619== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41619== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41619== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41619== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41619== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41619== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41619== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41619== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) +==41619== +==41619== Open file descriptor 158: +==41619== +==41619== +==41619== Open file descriptor 155: +==41619== +==41619== +==41619== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt +==41619== +==41619== +==41619== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41619== +==41619== +==41619== +==41619== HEAP SUMMARY: +==41619== in use at exit: 618,761 bytes in 8,244 blocks +==41619== total heap usage: 2,372,930 allocs, 2,364,686 frees, 2,468,286,885 bytes allocated +==41619== +==41619== LEAK SUMMARY: +==41619== definitely lost: 0 bytes in 0 blocks +==41619== indirectly lost: 0 bytes in 0 blocks +==41619== possibly lost: 0 bytes in 0 blocks +==41619== still reachable: 24 bytes in 2 blocks +==41619== suppressed: 618,737 bytes in 8,242 blocks +==41619== Reachable blocks (those to which a pointer was found) are not shown. +==41619== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41619== +==41619== For lists of detected and suppressed errors, rerun with: -s +==41619== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestExtendedBidomainTissue_valgrind.txt b/log-files/2025-02-12_21-17-58/TestExtendedBidomainTissue_valgrind.txt new file mode 100644 index 000000000..9ee554b8b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestExtendedBidomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==41609== Memcheck, a memory error detector +==41609== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41609== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41609== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainTissue -malloc_debug -malloc_dump -memory_info +==41609== Parent PID: 24057 +==41609== +==41609== +==41609== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41609== Open file descriptor 12: +==41609== at 0xBBAA07D: pipe (pipe.c:29) +==41609== by 0x1432F07D: ??? +==41609== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41609== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41609== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41609== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41609== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41609== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41609== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41609== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41609== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41609== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41609== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41609== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41609== +==41609== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41609== at 0xBBAEA1C: __open_nocancel (open64_nocancel.c:39) +==41609== by 0xBB32BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41609== by 0xA111822: ??? +==41609== by 0xA11196F: ??? +==41609== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41609== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41609== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41609== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41609== by 0xBF27418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41609== by 0xBEC0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41609== by 0xA25FD38: PetscInitialize (pinit.c:924) +==41609== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41609== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41609== by 0x13BB6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41609== by 0x136223: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41609== by 0x1389FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41609== by 0x1388F6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41609== by 0x138F09: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41609== by 0x134A25: main (TestExtendedBidomainTissue.cpp:18) +==41609== +==41609== Open file descriptor 158: +==41609== +==41609== +==41609== Open file descriptor 155: +==41609== +==41609== +==41609== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainTissue_valgrind.txt +==41609== +==41609== +==41609== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41609== +==41609== +==41609== +==41609== HEAP SUMMARY: +==41609== in use at exit: 618,354 bytes in 8,238 blocks +==41609== total heap usage: 120,933 allocs, 112,695 frees, 1,354,350,231 bytes allocated +==41609== +==41609== LEAK SUMMARY: +==41609== definitely lost: 0 bytes in 0 blocks +==41609== indirectly lost: 0 bytes in 0 blocks +==41609== possibly lost: 0 bytes in 0 blocks +==41609== still reachable: 24 bytes in 2 blocks +==41609== suppressed: 618,330 bytes in 8,236 blocks +==41609== Reachable blocks (those to which a pointer was found) are not shown. +==41609== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41609== +==41609== For lists of detected and suppressed errors, rerun with: -s +==41609== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestExtendedVsBidomainProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestExtendedVsBidomainProblem_valgrind.txt new file mode 100644 index 000000000..21805130b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestExtendedVsBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41532== Memcheck, a memory error detector +==41532== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41532== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41532== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info +==41532== Parent PID: 24057 +==41532== +==41532== +==41532== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41532== Open file descriptor 12: +==41532== at 0xABFA07D: pipe (pipe.c:29) +==41532== by 0x1432F07D: ??? +==41532== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41532== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41532== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41532== by 0xAF85D38: PetscInitialize (pinit.c:924) +==41532== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41532== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41532== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41532== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41532== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41532== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41532== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41532== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41532== +==41532== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41532== at 0xABFEA1C: __open_nocancel (open64_nocancel.c:39) +==41532== by 0xAB82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41532== by 0xA521822: ??? +==41532== by 0xA52196F: ??? +==41532== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41532== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41532== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41532== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41532== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41532== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41532== by 0xAF85D38: PetscInitialize (pinit.c:924) +==41532== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41532== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41532== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41532== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41532== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41532== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41532== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41532== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) +==41532== +==41532== Open file descriptor 158: +==41532== +==41532== +==41532== Open file descriptor 155: +==41532== +==41532== +==41532== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt +==41532== +==41532== +==41532== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41532== +==41532== +==41532== +==41532== HEAP SUMMARY: +==41532== in use at exit: 618,834 bytes in 8,248 blocks +==41532== total heap usage: 466,061 allocs, 457,813 frees, 1,446,178,235 bytes allocated +==41532== +==41532== LEAK SUMMARY: +==41532== definitely lost: 0 bytes in 0 blocks +==41532== indirectly lost: 0 bytes in 0 blocks +==41532== possibly lost: 0 bytes in 0 blocks +==41532== still reachable: 24 bytes in 2 blocks +==41532== suppressed: 618,810 bytes in 8,246 blocks +==41532== Reachable blocks (those to which a pointer was found) are not shown. +==41532== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41532== +==41532== For lists of detected and suppressed errors, rerun with: -s +==41532== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 64 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestExtrinsicPullModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestExtrinsicPullModifier_valgrind.txt new file mode 100644 index 000000000..4e5bc5e06 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestExtrinsicPullModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26404== Memcheck, a memory error detector +==26404== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26404== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26404== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestExtrinsicPullModifier -malloc_debug -malloc_dump -memory_info +==26404== Parent PID: 24057 +==26404== +==26404== +==26404== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26404== Open file descriptor 12: +==26404== at 0xF84307D: pipe (pipe.c:29) +==26404== by 0x196B407D: ??? +==26404== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26404== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26404== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26404== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26404== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26404== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26404== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26404== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26404== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26404== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26404== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26404== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26404== +==26404== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26404== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26404== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26404== by 0xF144822: ??? +==26404== by 0xF14496F: ??? +==26404== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26404== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26404== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26404== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26404== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26404== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26404== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26404== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26404== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26404== by 0x1FC280: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26404== by 0x1F453F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26404== by 0x1F7DA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26404== by 0x1F7CA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26404== by 0x1F82B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26404== by 0x1F2D35: main (TestExtrinsicPullModifier.cpp:18) +==26404== +==26404== Open file descriptor 158: +==26404== +==26404== +==26404== Open file descriptor 155: +==26404== +==26404== +==26404== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtrinsicPullModifier_valgrind.txt +==26404== +==26404== +==26404== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26404== +==26404== +==26404== +==26404== HEAP SUMMARY: +==26404== in use at exit: 618,370 bytes in 8,239 blocks +==26404== total heap usage: 223,577 allocs, 215,338 frees, 1,365,678,246 bytes allocated +==26404== +==26404== LEAK SUMMARY: +==26404== definitely lost: 0 bytes in 0 blocks +==26404== indirectly lost: 0 bytes in 0 blocks +==26404== possibly lost: 0 bytes in 0 blocks +==26404== still reachable: 56 bytes in 3 blocks +==26404== suppressed: 618,314 bytes in 8,236 blocks +==26404== Reachable blocks (those to which a pointer was found) are not shown. +==26404== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26404== +==26404== For lists of detected and suppressed errors, rerun with: -s +==26404== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestFemlabMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFemlabMeshReader_valgrind.txt new file mode 100644 index 000000000..ba097d693 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFemlabMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24627== Memcheck, a memory error detector +==24627== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24627== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24627== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFemlabMeshReader -malloc_debug -malloc_dump -memory_info +==24627== Parent PID: 24057 +==24627== +==24627== +==24627== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24627== Open file descriptor 12: +==24627== at 0x691707D: pipe (pipe.c:29) +==24627== by 0x100CC07D: ??? +==24627== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24627== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24627== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24627== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24627== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24627== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24627== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24627== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24627== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24627== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24627== +==24627== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24627== at 0x691BA1C: __open_nocancel (open64_nocancel.c:39) +==24627== by 0x689FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24627== by 0x659D822: ??? +==24627== by 0x659D96F: ??? +==24627== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24627== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24627== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24627== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24627== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24627== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24627== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24627== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24627== by 0x116D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24627== by 0x11236D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24627== by 0x114DBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24627== by 0x114C5E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24627== by 0x1152F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24627== by 0x110795: main (TestFemlabMeshReader.cpp:19) +==24627== +==24627== Open file descriptor 158: +==24627== +==24627== +==24627== Open file descriptor 155: +==24627== +==24627== +==24627== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFemlabMeshReader_valgrind.txt +==24627== +==24627== +==24627== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24627== +==24627== +==24627== +==24627== HEAP SUMMARY: +==24627== in use at exit: 618,242 bytes in 8,238 blocks +==24627== total heap usage: 68,515 allocs, 60,277 frees, 1,339,841,932 bytes allocated +==24627== +==24627== LEAK SUMMARY: +==24627== definitely lost: 0 bytes in 0 blocks +==24627== indirectly lost: 0 bytes in 0 blocks +==24627== possibly lost: 0 bytes in 0 blocks +==24627== still reachable: 24 bytes in 2 blocks +==24627== suppressed: 618,218 bytes in 8,236 blocks +==24627== Reachable blocks (those to which a pointer was found) are not shown. +==24627== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24627== +==24627== For lists of detected and suppressed errors, rerun with: -s +==24627== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt new file mode 100644 index 000000000..080aa60ba --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41621== Memcheck, a memory error detector +==41621== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41621== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41621== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReaderAbilityExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info +==41621== Parent PID: 24057 +==41621== +==41621== +==41621== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41621== Open file descriptor 12: +==41621== at 0xA7EA07D: pipe (pipe.c:29) +==41621== by 0x1432F07D: ??? +==41621== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41621== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41621== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41621== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41621== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41621== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41621== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41621== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41621== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41621== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41621== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41621== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41621== +==41621== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41621== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==41621== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41621== by 0xA111822: ??? +==41621== by 0xA11196F: ??? +==41621== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41621== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41621== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41621== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41621== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41621== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41621== by 0xAB73D38: PetscInitialize (pinit.c:924) +==41621== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41621== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41621== by 0x128E4C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41621== by 0x123553: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41621== by 0x126214: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41621== by 0x12610F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41621== by 0x126723: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41621== by 0x121D55: main (TestFibreReaderAbilityExtendedBidomainProblem.cpp:18) +==41621== +==41621== Open file descriptor 158: +==41621== +==41621== +==41621== Open file descriptor 155: +==41621== +==41621== +==41621== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReaderAbilityExtendedBidomainProblem_valgrind.txt +==41621== +==41621== +==41621== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41621== +==41621== +==41621== +==41621== HEAP SUMMARY: +==41621== in use at exit: 618,354 bytes in 8,238 blocks +==41621== total heap usage: 115,880 allocs, 107,642 frees, 1,342,961,158 bytes allocated +==41621== +==41621== LEAK SUMMARY: +==41621== definitely lost: 0 bytes in 0 blocks +==41621== indirectly lost: 0 bytes in 0 blocks +==41621== possibly lost: 0 bytes in 0 blocks +==41621== still reachable: 24 bytes in 2 blocks +==41621== suppressed: 618,330 bytes in 8,236 blocks +==41621== Reachable blocks (those to which a pointer was found) are not shown. +==41621== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41621== +==41621== For lists of detected and suppressed errors, rerun with: -s +==41621== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestFibreReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFibreReader_valgrind.txt new file mode 100644 index 000000000..421ce6c25 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFibreReader_valgrind.txt @@ -0,0 +1,36 @@ +==41671== Memcheck, a memory error detector +==41671== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41671== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41671== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreReader -malloc_debug -malloc_dump -memory_info +==41671== Parent PID: 24057 +==41671== +==41671== +==41671== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41671== Open file descriptor 158: +==41671== +==41671== +==41671== Open file descriptor 155: +==41671== +==41671== +==41671== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreReader_valgrind.txt +==41671== +==41671== +==41671== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41671== +==41671== +==41671== +==41671== HEAP SUMMARY: +==41671== in use at exit: 24 bytes in 2 blocks +==41671== total heap usage: 9,356 allocs, 9,354 frees, 3,309,586 bytes allocated +==41671== +==41671== LEAK SUMMARY: +==41671== definitely lost: 0 bytes in 0 blocks +==41671== indirectly lost: 0 bytes in 0 blocks +==41671== possibly lost: 0 bytes in 0 blocks +==41671== still reachable: 24 bytes in 2 blocks +==41671== suppressed: 0 bytes in 0 blocks +==41671== Reachable blocks (those to which a pointer was found) are not shown. +==41671== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41671== +==41671== For lists of detected and suppressed errors, rerun with: -s +==41671== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestFibreWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFibreWriter_valgrind.txt new file mode 100644 index 000000000..3ec49be15 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFibreWriter_valgrind.txt @@ -0,0 +1,73 @@ +==41672== Memcheck, a memory error detector +==41672== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41672== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41672== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestFibreWriter -malloc_debug -malloc_dump -memory_info +==41672== Parent PID: 24057 +==41672== +==41672== +==41672== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41672== Open file descriptor 12: +==41672== at 0x9A2407D: pipe (pipe.c:29) +==41672== by 0x1433107D: ??? +==41672== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41672== by 0x9659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41672== by 0x95F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41672== by 0x82C6D38: PetscInitialize (pinit.c:924) +==41672== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41672== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41672== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41672== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41672== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41672== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41672== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41672== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41672== +==41672== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41672== at 0x9A28A1C: __open_nocancel (open64_nocancel.c:39) +==41672== by 0x99ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41672== by 0x955B822: ??? +==41672== by 0x955B96F: ??? +==41672== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41672== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41672== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41672== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41672== by 0x9659418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41672== by 0x95F2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41672== by 0x82C6D38: PetscInitialize (pinit.c:924) +==41672== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41672== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41672== by 0x11BA8B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41672== by 0x1155D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41672== by 0x117F74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41672== by 0x117E6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41672== by 0x118483: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41672== by 0x113DD5: main (TestFibreWriter.cpp:18) +==41672== +==41672== Open file descriptor 158: +==41672== +==41672== +==41672== Open file descriptor 155: +==41672== +==41672== +==41672== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFibreWriter_valgrind.txt +==41672== +==41672== +==41672== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41672== +==41672== +==41672== +==41672== HEAP SUMMARY: +==41672== in use at exit: 618,354 bytes in 8,238 blocks +==41672== total heap usage: 57,353 allocs, 49,115 frees, 1,339,752,227 bytes allocated +==41672== +==41672== LEAK SUMMARY: +==41672== definitely lost: 0 bytes in 0 blocks +==41672== indirectly lost: 0 bytes in 0 blocks +==41672== possibly lost: 0 bytes in 0 blocks +==41672== still reachable: 24 bytes in 2 blocks +==41672== suppressed: 618,330 bytes in 8,236 blocks +==41672== Reachable blocks (those to which a pointer was found) are not shown. +==41672== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41672== +==41672== For lists of detected and suppressed errors, rerun with: -s +==41672== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestFileComparison_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFileComparison_valgrind.txt new file mode 100644 index 000000000..2badfdfd4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24153== Memcheck, a memory error detector +==24153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24153== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileComparison -malloc_debug -malloc_dump -memory_info +==24153== Parent PID: 24057 +==24153== +==24153== +==24153== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24153== Open file descriptor 12: +==24153== at 0x4CB207D: pipe (pipe.c:29) +==24153== by 0xAEA507D: ??? +==24153== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24153== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24153== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24153== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24153== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24153== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24153== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24153== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24153== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24153== by 0x110B35: main (TestFileComparison.cpp:18) +==24153== +==24153== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24153== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24153== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24153== by 0x493A822: ??? +==24153== by 0x493A96F: ??? +==24153== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24153== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24153== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24153== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24153== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24153== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24153== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24153== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24153== by 0x11886E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24153== by 0x112333: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24153== by 0x114C32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24153== by 0x114B2D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24153== by 0x115141: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24153== by 0x110B35: main (TestFileComparison.cpp:18) +==24153== +==24153== Open file descriptor 158: +==24153== +==24153== +==24153== Open file descriptor 155: +==24153== +==24153== +==24153== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileComparison_valgrind.txt +==24153== +==24153== +==24153== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24153== +==24153== +==24153== +==24153== HEAP SUMMARY: +==24153== in use at exit: 617,874 bytes in 8,238 blocks +==24153== total heap usage: 45,389 allocs, 37,151 frees, 1,338,618,100 bytes allocated +==24153== +==24153== LEAK SUMMARY: +==24153== definitely lost: 0 bytes in 0 blocks +==24153== indirectly lost: 0 bytes in 0 blocks +==24153== possibly lost: 0 bytes in 0 blocks +==24153== still reachable: 24 bytes in 2 blocks +==24153== suppressed: 617,850 bytes in 8,236 blocks +==24153== Reachable blocks (those to which a pointer was found) are not shown. +==24153== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24153== +==24153== For lists of detected and suppressed errors, rerun with: -s +==24153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestFileFinder_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFileFinder_valgrind.txt new file mode 100644 index 000000000..fc537c534 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==24152== Memcheck, a memory error detector +==24152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24152== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info +==24152== Parent PID: 24057 +==24152== +==24152== +==24152== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24152== Open file descriptor 12: +==24152== at 0x616907D: pipe (pipe.c:29) +==24152== by 0xAEA507D: ??? +==24152== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24152== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24152== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24152== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24152== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24152== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24152== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24152== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24152== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24152== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24152== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24152== by 0x111FB5: main (TestFileFinder.cpp:19) +==24152== +==24152== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24152== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24152== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24152== by 0x5CB8822: ??? +==24152== by 0x5CB896F: ??? +==24152== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24152== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24152== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24152== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24152== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24152== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24152== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24152== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24152== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24152== by 0x118727: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24152== by 0x113B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24152== by 0x1166DA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24152== by 0x11657A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24152== by 0x116C11: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24152== by 0x111FB5: main (TestFileFinder.cpp:19) +==24152== +==24152== Open file descriptor 158: +==24152== +==24152== +==24152== Open file descriptor 155: +==24152== +==24152== +==24152== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFileFinder_valgrind.txt +==24152== +==24152== +==24152== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24152== +==24152== +==24152== +==24152== HEAP SUMMARY: +==24152== in use at exit: 617,874 bytes in 8,238 blocks +==24152== total heap usage: 48,447 allocs, 40,209 frees, 1,339,910,323 bytes allocated +==24152== +==24152== LEAK SUMMARY: +==24152== definitely lost: 0 bytes in 0 blocks +==24152== indirectly lost: 0 bytes in 0 blocks +==24152== possibly lost: 0 bytes in 0 blocks +==24152== still reachable: 24 bytes in 2 blocks +==24152== suppressed: 617,850 bytes in 8,236 blocks +==24152== Reachable blocks (those to which a pointer was found) are not shown. +==24152== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24152== +==24152== For lists of detected and suppressed errors, rerun with: -s +==24152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestFineCoarseMeshPair_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFineCoarseMeshPair_valgrind.txt new file mode 100644 index 000000000..82dedff5b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFineCoarseMeshPair_valgrind.txt @@ -0,0 +1,73 @@ +==25269== Memcheck, a memory error detector +==25269== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25269== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25269== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info +==25269== Parent PID: 24057 +==25269== +==25269== +==25269== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25269== Open file descriptor 12: +==25269== at 0x6FF907D: pipe (pipe.c:29) +==25269== by 0x104DE07D: ??? +==25269== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25269== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0x7348D38: PetscInitialize (pinit.c:924) +==25269== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25269== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25269== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25269== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25269== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25269== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25269== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25269== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25269== +==25269== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25269== at 0x6FFDA1C: __open_nocancel (open64_nocancel.c:39) +==25269== by 0x6F81BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25269== by 0x693C822: ??? +==25269== by 0x693C96F: ??? +==25269== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25269== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25269== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25269== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25269== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25269== by 0x7348D38: PetscInitialize (pinit.c:924) +==25269== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25269== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25269== by 0x1229DA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25269== by 0x11DBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25269== by 0x120762: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25269== by 0x120602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25269== by 0x120C99: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25269== by 0x11C015: main (TestFineCoarseMeshPair.cpp:19) +==25269== +==25269== Open file descriptor 158: +==25269== +==25269== +==25269== Open file descriptor 155: +==25269== +==25269== +==25269== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFineCoarseMeshPair_valgrind.txt +==25269== +==25269== +==25269== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25269== +==25269== +==25269== +==25269== HEAP SUMMARY: +==25269== in use at exit: 618,274 bytes in 8,238 blocks +==25269== total heap usage: 1,547,433 allocs, 1,539,195 frees, 1,479,794,460 bytes allocated +==25269== +==25269== LEAK SUMMARY: +==25269== definitely lost: 0 bytes in 0 blocks +==25269== indirectly lost: 0 bytes in 0 blocks +==25269== possibly lost: 0 bytes in 0 blocks +==25269== still reachable: 24 bytes in 2 blocks +==25269== suppressed: 618,250 bytes in 8,236 blocks +==25269== Reachable blocks (those to which a pointer was found) are not shown. +==25269== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25269== +==25269== For lists of detected and suppressed errors, rerun with: -s +==25269== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestFloatingPointDivisionByZeroPetsc_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFloatingPointDivisionByZeroPetsc_valgrind.txt new file mode 100644 index 000000000..c1771feb0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFloatingPointDivisionByZeroPetsc_valgrind.txt @@ -0,0 +1,73 @@ +==24155== Memcheck, a memory error detector +==24155== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24155== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24155== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZeroPetsc -malloc_debug -malloc_dump -memory_info +==24155== Parent PID: 24057 +==24155== +==24155== +==24155== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24155== Open file descriptor 12: +==24155== at 0x4CB207D: pipe (pipe.c:29) +==24155== by 0xAEA507D: ??? +==24155== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24155== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24155== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24155== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24155== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24155== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24155== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24155== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24155== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24155== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24155== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24155== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24155== +==24155== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24155== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24155== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24155== by 0x493A822: ??? +==24155== by 0x493A96F: ??? +==24155== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24155== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24155== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24155== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24155== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24155== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24155== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24155== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24155== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24155== by 0x1123B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24155== by 0x10DFCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24155== by 0x110452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24155== by 0x1102F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24155== by 0x110989: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24155== by 0x10C3F5: main (TestFloatingPointDivisionByZeroPetsc.cpp:19) +==24155== +==24155== Open file descriptor 158: +==24155== +==24155== +==24155== Open file descriptor 155: +==24155== +==24155== +==24155== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZeroPetsc_valgrind.txt +==24155== +==24155== +==24155== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24155== +==24155== +==24155== +==24155== HEAP SUMMARY: +==24155== in use at exit: 617,874 bytes in 8,238 blocks +==24155== total heap usage: 44,909 allocs, 36,671 frees, 1,338,159,957 bytes allocated +==24155== +==24155== LEAK SUMMARY: +==24155== definitely lost: 0 bytes in 0 blocks +==24155== indirectly lost: 0 bytes in 0 blocks +==24155== possibly lost: 0 bytes in 0 blocks +==24155== still reachable: 24 bytes in 2 blocks +==24155== suppressed: 617,850 bytes in 8,236 blocks +==24155== Reachable blocks (those to which a pointer was found) are not shown. +==24155== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24155== +==24155== For lists of detected and suppressed errors, rerun with: -s +==24155== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestFloatingPointDivisionByZero_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFloatingPointDivisionByZero_valgrind.txt new file mode 100644 index 000000000..6c6dff467 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFloatingPointDivisionByZero_valgrind.txt @@ -0,0 +1,73 @@ +==24154== Memcheck, a memory error detector +==24154== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24154== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24154== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFloatingPointDivisionByZero -malloc_debug -malloc_dump -memory_info +==24154== Parent PID: 24057 +==24154== +==24154== +==24154== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24154== Open file descriptor 12: +==24154== at 0x616907D: pipe (pipe.c:29) +==24154== by 0xAEA507D: ??? +==24154== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24154== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24154== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24154== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24154== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24154== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24154== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24154== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24154== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24154== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24154== +==24154== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24154== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24154== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24154== by 0x5CB8822: ??? +==24154== by 0x5CB896F: ??? +==24154== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24154== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24154== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24154== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24154== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24154== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24154== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24154== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24154== by 0x11245F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24154== by 0x10E06D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24154== by 0x1104F2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24154== by 0x110392: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24154== by 0x110A29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24154== by 0x10C495: main (TestFloatingPointDivisionByZero.cpp:19) +==24154== +==24154== Open file descriptor 158: +==24154== +==24154== +==24154== Open file descriptor 155: +==24154== +==24154== +==24154== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFloatingPointDivisionByZero_valgrind.txt +==24154== +==24154== +==24154== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24154== +==24154== +==24154== +==24154== HEAP SUMMARY: +==24154== in use at exit: 617,874 bytes in 8,238 blocks +==24154== total heap usage: 44,910 allocs, 36,672 frees, 1,338,159,670 bytes allocated +==24154== +==24154== LEAK SUMMARY: +==24154== definitely lost: 0 bytes in 0 blocks +==24154== indirectly lost: 0 bytes in 0 blocks +==24154== possibly lost: 0 bytes in 0 blocks +==24154== still reachable: 24 bytes in 2 blocks +==24154== suppressed: 617,850 bytes in 8,236 blocks +==24154== Reachable blocks (those to which a pointer was found) are not shown. +==24154== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24154== +==24154== For lists of detected and suppressed errors, rerun with: -s +==24154== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestFluidSource_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFluidSource_valgrind.txt new file mode 100644 index 000000000..eb7a1cf49 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFluidSource_valgrind.txt @@ -0,0 +1,73 @@ +==24835== Memcheck, a memory error detector +==24835== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24835== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24835== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestFluidSource -malloc_debug -malloc_dump -memory_info +==24835== Parent PID: 24057 +==24835== +==24835== +==24835== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24835== Open file descriptor 12: +==24835== at 0x7DCC07D: pipe (pipe.c:29) +==24835== by 0x100CC07D: ??? +==24835== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24835== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x6686D38: PetscInitialize (pinit.c:924) +==24835== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24835== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24835== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24835== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24835== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24835== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24835== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24835== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24835== +==24835== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24835== at 0x7DD0A1C: __open_nocancel (open64_nocancel.c:39) +==24835== by 0x7D54BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24835== by 0x791B822: ??? +==24835== by 0x791B96F: ??? +==24835== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24835== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24835== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24835== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24835== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24835== by 0x6686D38: PetscInitialize (pinit.c:924) +==24835== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24835== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24835== by 0x11576F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24835== by 0x110FF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24835== by 0x113510: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24835== by 0x11340B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24835== by 0x113A1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24835== by 0x10F7F5: main (TestFluidSource.cpp:18) +==24835== +==24835== Open file descriptor 158: +==24835== +==24835== +==24835== Open file descriptor 155: +==24835== +==24835== +==24835== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFluidSource_valgrind.txt +==24835== +==24835== +==24835== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24835== +==24835== +==24835== +==24835== HEAP SUMMARY: +==24835== in use at exit: 618,242 bytes in 8,238 blocks +==24835== total heap usage: 47,306 allocs, 39,068 frees, 1,338,381,592 bytes allocated +==24835== +==24835== LEAK SUMMARY: +==24835== definitely lost: 0 bytes in 0 blocks +==24835== indirectly lost: 0 bytes in 0 blocks +==24835== possibly lost: 0 bytes in 0 blocks +==24835== still reachable: 24 bytes in 2 blocks +==24835== suppressed: 618,218 bytes in 8,236 blocks +==24835== Reachable blocks (those to which a pointer was found) are not shown. +==24835== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24835== +==24835== For lists of detected and suppressed errors, rerun with: -s +==24835== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestForces_valgrind.txt b/log-files/2025-02-12_21-17-58/TestForces_valgrind.txt new file mode 100644 index 000000000..ba37378bf --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestForces_valgrind.txt @@ -0,0 +1,73 @@ +==26124== Memcheck, a memory error detector +==26124== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26124== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26124== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestForces -malloc_debug -malloc_dump -memory_info +==26124== Parent PID: 24057 +==26124== +==26124== +==26124== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26124== Open file descriptor 12: +==26124== at 0xF92C07D: pipe (pipe.c:29) +==26124== by 0x196B407D: ??? +==26124== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26124== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0x10218D38: PetscInitialize (pinit.c:924) +==26124== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26124== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26124== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26124== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26124== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26124== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26124== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26124== by 0x1463E5: main (TestForces.cpp:19) +==26124== +==26124== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26124== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26124== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26124== by 0xF144822: ??? +==26124== by 0xF14496F: ??? +==26124== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26124== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26124== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26124== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26124== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26124== by 0x10218D38: PetscInitialize (pinit.c:924) +==26124== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26124== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26124== by 0x14FA72: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26124== by 0x147FBD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26124== by 0x14B1C0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26124== by 0x14B060: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26124== by 0x14B6F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26124== by 0x1463E5: main (TestForces.cpp:19) +==26124== +==26124== Open file descriptor 158: +==26124== +==26124== +==26124== Open file descriptor 155: +==26124== +==26124== +==26124== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestForces_valgrind.txt +==26124== +==26124== +==26124== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26124== +==26124== +==26124== +==26124== HEAP SUMMARY: +==26124== in use at exit: 618,370 bytes in 8,239 blocks +==26124== total heap usage: 100,217 allocs, 91,978 frees, 1,344,051,669 bytes allocated +==26124== +==26124== LEAK SUMMARY: +==26124== definitely lost: 0 bytes in 0 blocks +==26124== indirectly lost: 0 bytes in 0 blocks +==26124== possibly lost: 0 bytes in 0 blocks +==26124== still reachable: 56 bytes in 3 blocks +==26124== suppressed: 618,314 bytes in 8,236 blocks +==26124== Reachable blocks (those to which a pointer was found) are not shown. +==26124== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26124== +==26124== For lists of detected and suppressed errors, rerun with: -s +==26124== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestFourthOrderTensor_valgrind.txt b/log-files/2025-02-12_21-17-58/TestFourthOrderTensor_valgrind.txt new file mode 100644 index 000000000..03cc24fa0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestFourthOrderTensor_valgrind.txt @@ -0,0 +1,73 @@ +==24362== Memcheck, a memory error detector +==24362== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24362== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24362== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestFourthOrderTensor -malloc_debug -malloc_dump -memory_info +==24362== Parent PID: 24057 +==24362== +==24362== +==24362== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24362== Open file descriptor 12: +==24362== at 0x4CB407D: pipe (pipe.c:29) +==24362== by 0xAEA507D: ??? +==24362== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24362== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24362== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24362== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24362== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24362== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24362== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24362== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24362== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24362== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24362== +==24362== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24362== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==24362== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24362== by 0x493A822: ??? +==24362== by 0x493A96F: ??? +==24362== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24362== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24362== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24362== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24362== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24362== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24362== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24362== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24362== by 0x114306: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24362== by 0x10FD33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24362== by 0x1122B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24362== by 0x1121AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24362== by 0x1127BF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24362== by 0x10E535: main (TestFourthOrderTensor.cpp:18) +==24362== +==24362== Open file descriptor 158: +==24362== +==24362== +==24362== Open file descriptor 155: +==24362== +==24362== +==24362== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestFourthOrderTensor_valgrind.txt +==24362== +==24362== +==24362== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24362== +==24362== +==24362== +==24362== HEAP SUMMARY: +==24362== in use at exit: 617,874 bytes in 8,238 blocks +==24362== total heap usage: 44,930 allocs, 36,692 frees, 1,338,167,054 bytes allocated +==24362== +==24362== LEAK SUMMARY: +==24362== definitely lost: 0 bytes in 0 blocks +==24362== indirectly lost: 0 bytes in 0 blocks +==24362== possibly lost: 0 bytes in 0 blocks +==24362== still reachable: 24 bytes in 2 blocks +==24362== suppressed: 617,850 bytes in 8,236 blocks +==24362== Reachable blocks (those to which a pointer was found) are not shown. +==24362== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24362== +==24362== For lists of detected and suppressed errors, rerun with: -s +==24362== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestGIModifiedModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGIModifiedModels_valgrind.txt new file mode 100644 index 000000000..4a24f1374 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGIModifiedModels_valgrind.txt @@ -0,0 +1,73 @@ +==41642== Memcheck, a memory error detector +==41642== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41642== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41642== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGIModifiedModels -malloc_debug -malloc_dump -memory_info +==41642== Parent PID: 24057 +==41642== +==41642== +==41642== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41642== Open file descriptor 12: +==41642== at 0x886807D: pipe (pipe.c:29) +==41642== by 0x1432F07D: ??? +==41642== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41642== by 0x9F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41642== by 0x9EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41642== by 0x8BF1D38: PetscInitialize (pinit.c:924) +==41642== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41642== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41642== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41642== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41642== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41642== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41642== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41642== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41642== +==41642== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41642== at 0x886CA1C: __open_nocancel (open64_nocancel.c:39) +==41642== by 0x87F0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41642== by 0x8492822: ??? +==41642== by 0x849296F: ??? +==41642== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41642== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41642== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41642== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41642== by 0x9F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41642== by 0x9EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41642== by 0x8BF1D38: PetscInitialize (pinit.c:924) +==41642== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41642== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41642== by 0x12C2F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41642== by 0x126ECB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41642== by 0x129968: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41642== by 0x129808: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41642== by 0x129E9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41642== by 0x122165: main (TestGIModifiedModels.cpp:19) +==41642== +==41642== Open file descriptor 158: +==41642== +==41642== +==41642== Open file descriptor 155: +==41642== +==41642== +==41642== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGIModifiedModels_valgrind.txt +==41642== +==41642== +==41642== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41642== +==41642== +==41642== +==41642== HEAP SUMMARY: +==41642== in use at exit: 618,281 bytes in 8,234 blocks +==41642== total heap usage: 1,453,371 allocs, 1,445,137 frees, 1,614,517,939 bytes allocated +==41642== +==41642== LEAK SUMMARY: +==41642== definitely lost: 0 bytes in 0 blocks +==41642== indirectly lost: 0 bytes in 0 blocks +==41642== possibly lost: 0 bytes in 0 blocks +==41642== still reachable: 24 bytes in 2 blocks +==41642== suppressed: 618,257 bytes in 8,232 blocks +==41642== Reachable blocks (those to which a pointer was found) are not shown. +==41642== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41642== +==41642== For lists of detected and suppressed errors, rerun with: -s +==41642== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestGRL1IvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGRL1IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..5e54d006e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGRL1IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25036== Memcheck, a memory error detector +==25036== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25036== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25036== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL1IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25036== Parent PID: 24057 +==25036== +==25036== +==25036== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25036== Open file descriptor 12: +==25036== at 0x503907D: pipe (pipe.c:29) +==25036== by 0xB1E607D: ??? +==25036== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25036== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25036== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25036== by 0x5308D38: PetscInitialize (pinit.c:924) +==25036== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25036== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25036== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25036== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25036== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25036== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25036== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25036== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==25036== +==25036== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25036== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25036== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25036== by 0x4B7C822: ??? +==25036== by 0x4B7C96F: ??? +==25036== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25036== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25036== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25036== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25036== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25036== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25036== by 0x5308D38: PetscInitialize (pinit.c:924) +==25036== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25036== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25036== by 0x1271A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25036== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25036== by 0x1242F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25036== by 0x124199: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25036== by 0x12482F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25036== by 0x11EEA5: main (TestGRL1IvpOdeSolver.cpp:19) +==25036== +==25036== Open file descriptor 158: +==25036== +==25036== +==25036== Open file descriptor 155: +==25036== +==25036== +==25036== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL1IvpOdeSolver_valgrind.txt +==25036== +==25036== +==25036== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25036== +==25036== +==25036== +==25036== HEAP SUMMARY: +==25036== in use at exit: 617,938 bytes in 8,238 blocks +==25036== total heap usage: 50,997 allocs, 42,759 frees, 1,338,666,127 bytes allocated +==25036== +==25036== LEAK SUMMARY: +==25036== definitely lost: 0 bytes in 0 blocks +==25036== indirectly lost: 0 bytes in 0 blocks +==25036== possibly lost: 0 bytes in 0 blocks +==25036== still reachable: 24 bytes in 2 blocks +==25036== suppressed: 617,914 bytes in 8,236 blocks +==25036== Reachable blocks (those to which a pointer was found) are not shown. +==25036== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25036== +==25036== For lists of detected and suppressed errors, rerun with: -s +==25036== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestGRL2IvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGRL2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..89b690fcf --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGRL2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25042== Memcheck, a memory error detector +==25042== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25042== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25042== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestGRL2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25042== Parent PID: 24057 +==25042== +==25042== +==25042== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25042== Open file descriptor 12: +==25042== at 0x503907D: pipe (pipe.c:29) +==25042== by 0xB1E607D: ??? +==25042== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25042== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x5308D38: PetscInitialize (pinit.c:924) +==25042== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25042== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25042== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25042== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25042== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25042== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25042== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25042== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==25042== +==25042== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25042== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25042== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25042== by 0x4B7C822: ??? +==25042== by 0x4B7C96F: ??? +==25042== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25042== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25042== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25042== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25042== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25042== by 0x5308D38: PetscInitialize (pinit.c:924) +==25042== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25042== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25042== by 0x127082: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25042== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25042== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25042== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25042== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25042== by 0x11EEA5: main (TestGRL2IvpOdeSolver.cpp:19) +==25042== +==25042== Open file descriptor 158: +==25042== +==25042== +==25042== Open file descriptor 155: +==25042== +==25042== +==25042== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGRL2IvpOdeSolver_valgrind.txt +==25042== +==25042== +==25042== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25042== +==25042== +==25042== +==25042== HEAP SUMMARY: +==25042== in use at exit: 617,938 bytes in 8,238 blocks +==25042== total heap usage: 51,372 allocs, 43,134 frees, 1,338,714,898 bytes allocated +==25042== +==25042== LEAK SUMMARY: +==25042== definitely lost: 0 bytes in 0 blocks +==25042== indirectly lost: 0 bytes in 0 blocks +==25042== possibly lost: 0 bytes in 0 blocks +==25042== still reachable: 24 bytes in 2 blocks +==25042== suppressed: 617,914 bytes in 8,236 blocks +==25042== Reachable blocks (those to which a pointer was found) are not shown. +==25042== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25042== +==25042== For lists of detected and suppressed errors, rerun with: -s +==25042== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestGaussianQuadratureRule_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGaussianQuadratureRule_valgrind.txt new file mode 100644 index 000000000..a4b660e6d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGaussianQuadratureRule_valgrind.txt @@ -0,0 +1,73 @@ +==25287== Memcheck, a memory error detector +==25287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info +==25287== Parent PID: 24057 +==25287== +==25287== +==25287== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25287== Open file descriptor 12: +==25287== at 0x6D9B07D: pipe (pipe.c:29) +==25287== by 0x104DE07D: ??? +==25287== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25287== by 0x880F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x87A8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x70EAD38: PetscInitialize (pinit.c:924) +==25287== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25287== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25287== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25287== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25287== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25287== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25287== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25287== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25287== +==25287== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25287== at 0x6D9FA1C: __open_nocancel (open64_nocancel.c:39) +==25287== by 0x6D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25287== by 0x693C822: ??? +==25287== by 0x693C96F: ??? +==25287== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25287== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25287== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25287== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25287== by 0x880F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x87A8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25287== by 0x70EAD38: PetscInitialize (pinit.c:924) +==25287== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25287== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25287== by 0x11A084: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25287== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25287== by 0x1180E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25287== by 0x117F82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25287== by 0x118619: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25287== by 0x113AB5: main (TestGaussianQuadratureRule.cpp:19) +==25287== +==25287== Open file descriptor 158: +==25287== +==25287== +==25287== Open file descriptor 155: +==25287== +==25287== +==25287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGaussianQuadratureRule_valgrind.txt +==25287== +==25287== +==25287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25287== +==25287== +==25287== +==25287== HEAP SUMMARY: +==25287== in use at exit: 618,274 bytes in 8,238 blocks +==25287== total heap usage: 47,637 allocs, 39,399 frees, 1,338,403,925 bytes allocated +==25287== +==25287== LEAK SUMMARY: +==25287== definitely lost: 0 bytes in 0 blocks +==25287== indirectly lost: 0 bytes in 0 blocks +==25287== possibly lost: 0 bytes in 0 blocks +==25287== still reachable: 24 bytes in 2 blocks +==25287== suppressed: 618,250 bytes in 8,236 blocks +==25287== Reachable blocks (those to which a pointer was found) are not shown. +==25287== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25287== +==25287== For lists of detected and suppressed errors, rerun with: -s +==25287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestGeneralizedRushLarsen_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGeneralizedRushLarsen_valgrind.txt new file mode 100644 index 000000000..c456e06a3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGeneralizedRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==42116== Memcheck, a memory error detector +==42116== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42116== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42116== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestGeneralizedRushLarsen -malloc_debug -malloc_dump -memory_info +==42116== Parent PID: 24057 +==42116== +==42116== +==42116== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42116== Open file descriptor 12: +==42116== at 0x87B107D: pipe (pipe.c:29) +==42116== by 0x1432F07D: ??? +==42116== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42116== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42116== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42116== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==42116== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42116== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42116== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42116== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42116== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42116== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42116== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42116== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==42116== +==42116== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42116== at 0x87B5A1C: __open_nocancel (open64_nocancel.c:39) +==42116== by 0x8739BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42116== by 0x841F822: ??? +==42116== by 0x841F96F: ??? +==42116== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42116== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42116== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42116== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42116== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42116== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42116== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==42116== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42116== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42116== by 0x11C6A0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42116== by 0x1178AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42116== by 0x11A2AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42116== by 0x11A14C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42116== by 0x11A7E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42116== by 0x115CD5: main (TestGeneralizedRushLarsen.cpp:19) +==42116== +==42116== Open file descriptor 158: +==42116== +==42116== +==42116== Open file descriptor 155: +==42116== +==42116== +==42116== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGeneralizedRushLarsen_valgrind.txt +==42116== +==42116== +==42116== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42116== +==42116== +==42116== +==42116== HEAP SUMMARY: +==42116== in use at exit: 621,886 bytes in 8,242 blocks +==42116== total heap usage: 3,054,219 allocs, 3,045,977 frees, 1,612,720,242 bytes allocated +==42116== +==42116== LEAK SUMMARY: +==42116== definitely lost: 0 bytes in 0 blocks +==42116== indirectly lost: 0 bytes in 0 blocks +==42116== possibly lost: 0 bytes in 0 blocks +==42116== still reachable: 3,629 bytes in 10 blocks +==42116== suppressed: 618,257 bytes in 8,232 blocks +==42116== Reachable blocks (those to which a pointer was found) are not shown. +==42116== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42116== +==42116== For lists of detected and suppressed errors, rerun with: -s +==42116== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestGenericEventHandler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGenericEventHandler_valgrind.txt new file mode 100644 index 000000000..1aa536cb1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGenericEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24181== Memcheck, a memory error detector +==24181== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24181== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24181== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info +==24181== Parent PID: 24057 +==24181== +==24181== +==24181== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24181== Open file descriptor 12: +==24181== at 0x4DEB07D: pipe (pipe.c:29) +==24181== by 0xAEA307D: ??? +==24181== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24181== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x5036D38: PetscInitialize (pinit.c:924) +==24181== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24181== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24181== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24181== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24181== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24181== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24181== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24181== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24181== +==24181== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24181== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24181== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24181== by 0x493A822: ??? +==24181== by 0x493A96F: ??? +==24181== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24181== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24181== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24181== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24181== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24181== by 0x5036D38: PetscInitialize (pinit.c:924) +==24181== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24181== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24181== by 0x1166EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24181== by 0x11164D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24181== by 0x11478C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24181== by 0x11462C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24181== by 0x114CC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24181== by 0x10FA75: main (TestGenericEventHandler.cpp:19) +==24181== +==24181== Open file descriptor 158: +==24181== +==24181== +==24181== Open file descriptor 155: +==24181== +==24181== +==24181== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGenericEventHandler_valgrind.txt +==24181== +==24181== +==24181== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24181== +==24181== +==24181== +==24181== HEAP SUMMARY: +==24181== in use at exit: 617,874 bytes in 8,238 blocks +==24181== total heap usage: 44,991 allocs, 36,753 frees, 1,338,170,560 bytes allocated +==24181== +==24181== LEAK SUMMARY: +==24181== definitely lost: 0 bytes in 0 blocks +==24181== indirectly lost: 0 bytes in 0 blocks +==24181== possibly lost: 0 bytes in 0 blocks +==24181== still reachable: 24 bytes in 2 blocks +==24181== suppressed: 617,850 bytes in 8,236 blocks +==24181== Reachable blocks (those to which a pointer was found) are not shown. +==24181== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24181== +==24181== For lists of detected and suppressed errors, rerun with: -s +==24181== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestGmshMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGmshMeshReader_valgrind.txt new file mode 100644 index 000000000..a5ae56624 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGmshMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24628== Memcheck, a memory error detector +==24628== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24628== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24628== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestGmshMeshReader -malloc_debug -malloc_dump -memory_info +==24628== Parent PID: 24057 +==24628== +==24628== +==24628== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24628== Open file descriptor 12: +==24628== at 0x6D4307D: pipe (pipe.c:29) +==24628== by 0x100CC07D: ??? +==24628== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24628== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x701FD38: PetscInitialize (pinit.c:924) +==24628== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24628== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24628== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24628== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24628== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24628== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24628== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24628== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24628== +==24628== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24628== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24628== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24628== by 0x659D822: ??? +==24628== by 0x659D96F: ??? +==24628== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24628== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24628== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24628== by 0x701FD38: PetscInitialize (pinit.c:924) +==24628== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24628== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24628== by 0x1235DE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24628== by 0x11EA0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24628== by 0x12152A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24628== by 0x1213CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24628== by 0x121A61: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24628== by 0x11CE35: main (TestGmshMeshReader.cpp:19) +==24628== +==24628== Open file descriptor 158: +==24628== +==24628== +==24628== Open file descriptor 155: +==24628== +==24628== +==24628== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGmshMeshReader_valgrind.txt +==24628== +==24628== +==24628== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24628== +==24628== +==24628== +==24628== HEAP SUMMARY: +==24628== in use at exit: 618,242 bytes in 8,238 blocks +==24628== total heap usage: 50,714 allocs, 42,476 frees, 1,339,358,705 bytes allocated +==24628== +==24628== LEAK SUMMARY: +==24628== definitely lost: 0 bytes in 0 blocks +==24628== indirectly lost: 0 bytes in 0 blocks +==24628== possibly lost: 0 bytes in 0 blocks +==24628== still reachable: 24 bytes in 2 blocks +==24628== suppressed: 618,218 bytes in 8,236 blocks +==24628== Reachable blocks (those to which a pointer was found) are not shown. +==24628== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24628== +==24628== For lists of detected and suppressed errors, rerun with: -s +==24628== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestGoldbeter1991OdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestGoldbeter1991OdeSystem_valgrind.txt new file mode 100644 index 000000000..0929a3157 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestGoldbeter1991OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==26005== Memcheck, a memory error detector +==26005== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26005== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26005== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestGoldbeter1991OdeSystem -malloc_debug -malloc_dump -memory_info +==26005== Parent PID: 24057 +==26005== +==26005== +==26005== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26005== Open file descriptor 12: +==26005== at 0xEF9407D: pipe (pipe.c:29) +==26005== by 0x196B507D: ??? +==26005== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26005== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26005== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26005== by 0xD871D38: PetscInitialize (pinit.c:924) +==26005== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26005== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26005== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26005== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26005== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26005== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26005== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26005== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==26005== +==26005== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26005== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==26005== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26005== by 0xD723822: ??? +==26005== by 0xD72396F: ??? +==26005== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26005== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26005== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26005== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26005== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26005== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26005== by 0xD871D38: PetscInitialize (pinit.c:924) +==26005== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26005== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26005== by 0x124157: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26005== by 0x11F6A3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26005== by 0x121BF4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26005== by 0x121AF0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26005== by 0x122103: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26005== by 0x11DEA5: main (TestGoldbeter1991OdeSystem.cpp:18) +==26005== +==26005== Open file descriptor 158: +==26005== +==26005== +==26005== Open file descriptor 155: +==26005== +==26005== +==26005== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestGoldbeter1991OdeSystem_valgrind.txt +==26005== +==26005== +==26005== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26005== +==26005== +==26005== +==26005== HEAP SUMMARY: +==26005== in use at exit: 618,338 bytes in 8,238 blocks +==26005== total heap usage: 63,221 allocs, 54,983 frees, 1,339,961,732 bytes allocated +==26005== +==26005== LEAK SUMMARY: +==26005== definitely lost: 0 bytes in 0 blocks +==26005== indirectly lost: 0 bytes in 0 blocks +==26005== possibly lost: 0 bytes in 0 blocks +==26005== still reachable: 24 bytes in 2 blocks +==26005== suppressed: 618,314 bytes in 8,236 blocks +==26005== Reachable blocks (those to which a pointer was found) are not shown. +==26005== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26005== +==26005== For lists of detected and suppressed errors, rerun with: -s +==26005== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHdf5Converters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHdf5Converters_valgrind.txt new file mode 100644 index 000000000..e156c0cb8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHdf5Converters_valgrind.txt @@ -0,0 +1,73 @@ +==25288== Memcheck, a memory error detector +==25288== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25288== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25288== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestHdf5Converters -malloc_debug -malloc_dump -memory_info +==25288== Parent PID: 24057 +==25288== +==25288== +==25288== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25288== Open file descriptor 12: +==25288== at 0x734D07D: pipe (pipe.c:29) +==25288== by 0x104DE07D: ??? +==25288== by 0xC6124CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25288== by 0x8DC1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25288== by 0x8D5AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25288== by 0x769CD38: PetscInitialize (pinit.c:924) +==25288== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25288== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25288== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25288== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25288== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25288== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25288== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25288== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25288== +==25288== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25288== at 0x7351A1C: __open_nocancel (open64_nocancel.c:39) +==25288== by 0x72D5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25288== by 0x693C822: ??? +==25288== by 0x693C96F: ??? +==25288== by 0xC6B76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25288== by 0xC6B7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25288== by 0xC66D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25288== by 0xC6122DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25288== by 0x8DC1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25288== by 0x8D5AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25288== by 0x769CD38: PetscInitialize (pinit.c:924) +==25288== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25288== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25288== by 0x1213EA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25288== by 0x11CA33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25288== by 0x11F486: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25288== by 0x11F381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25288== by 0x11F995: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25288== by 0x11B235: main (TestHdf5Converters.cpp:18) +==25288== +==25288== Open file descriptor 158: +==25288== +==25288== +==25288== Open file descriptor 155: +==25288== +==25288== +==25288== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5Converters_valgrind.txt +==25288== +==25288== +==25288== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25288== +==25288== +==25288== +==25288== HEAP SUMMARY: +==25288== in use at exit: 618,274 bytes in 8,238 blocks +==25288== total heap usage: 206,014 allocs, 197,776 frees, 1,394,472,476 bytes allocated +==25288== +==25288== LEAK SUMMARY: +==25288== definitely lost: 0 bytes in 0 blocks +==25288== indirectly lost: 0 bytes in 0 blocks +==25288== possibly lost: 0 bytes in 0 blocks +==25288== still reachable: 24 bytes in 2 blocks +==25288== suppressed: 618,250 bytes in 8,236 blocks +==25288== Reachable blocks (those to which a pointer was found) are not shown. +==25288== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25288== +==25288== For lists of detected and suppressed errors, rerun with: -s +==25288== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestHdf5DataReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHdf5DataReader_valgrind.txt new file mode 100644 index 000000000..ff5805fcc --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHdf5DataReader_valgrind.txt @@ -0,0 +1,73 @@ +==24314== Memcheck, a memory error detector +==24314== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24314== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24314== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info +==24314== Parent PID: 24057 +==24314== +==24314== +==24314== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24314== Open file descriptor 12: +==24314== at 0x645A07D: pipe (pipe.c:29) +==24314== by 0xAF1807D: ??? +==24314== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24314== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24314== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24314== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24314== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24314== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24314== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24314== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24314== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24314== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24314== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24314== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24314== +==24314== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24314== at 0x645EA1C: __open_nocancel (open64_nocancel.c:39) +==24314== by 0x63E2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24314== by 0x5D2B822: ??? +==24314== by 0x5D2B96F: ??? +==24314== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24314== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24314== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24314== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24314== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24314== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24314== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24314== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24314== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24314== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24314== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24314== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24314== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24314== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24314== by 0x1151B5: main (TestHdf5DataReader.cpp:19) +==24314== +==24314== Open file descriptor 158: +==24314== +==24314== +==24314== Open file descriptor 155: +==24314== +==24314== +==24314== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt +==24314== +==24314== +==24314== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24314== +==24314== +==24314== +==24314== HEAP SUMMARY: +==24314== in use at exit: 618,370 bytes in 8,248 blocks +==24314== total heap usage: 58,548 allocs, 50,300 frees, 1,348,775,736 bytes allocated +==24314== +==24314== LEAK SUMMARY: +==24314== definitely lost: 0 bytes in 0 blocks +==24314== indirectly lost: 0 bytes in 0 blocks +==24314== possibly lost: 0 bytes in 0 blocks +==24314== still reachable: 24 bytes in 2 blocks +==24314== suppressed: 618,346 bytes in 8,246 blocks +==24314== Reachable blocks (those to which a pointer was found) are not shown. +==24314== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24314== +==24314== For lists of detected and suppressed errors, rerun with: -s +==24314== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestHdf5DataWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHdf5DataWriter_valgrind.txt new file mode 100644 index 000000000..6c5f75a5e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHdf5DataWriter_valgrind.txt @@ -0,0 +1,74 @@ +==24332== Memcheck, a memory error detector +==24332== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24332== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24332== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info +==24332== Parent PID: 24057 +==24332== +==24332== Warning: invalid file descriptor -1 in syscall close() +==24332== +==24332== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24332== Open file descriptor 12: +==24332== at 0x659107D: pipe (pipe.c:29) +==24332== by 0xAF1807D: ??? +==24332== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24332== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24332== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24332== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24332== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24332== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24332== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24332== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24332== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24332== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24332== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24332== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24332== +==24332== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24332== at 0x6595A1C: __open_nocancel (open64_nocancel.c:39) +==24332== by 0x6519BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24332== by 0x5D2B822: ??? +==24332== by 0x5D2B96F: ??? +==24332== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24332== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24332== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24332== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24332== by 0x61E0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24332== by 0x6179D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24332== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24332== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24332== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24332== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24332== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24332== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24332== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24332== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24332== by 0x115255: main (TestHdf5DataWriter.cpp:19) +==24332== +==24332== Open file descriptor 158: +==24332== +==24332== +==24332== Open file descriptor 155: +==24332== +==24332== +==24332== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt +==24332== +==24332== +==24332== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24332== +==24332== +==24332== +==24332== HEAP SUMMARY: +==24332== in use at exit: 618,370 bytes in 8,248 blocks +==24332== total heap usage: 114,802 allocs, 106,554 frees, 1,412,665,953 bytes allocated +==24332== +==24332== LEAK SUMMARY: +==24332== definitely lost: 0 bytes in 0 blocks +==24332== indirectly lost: 0 bytes in 0 blocks +==24332== possibly lost: 0 bytes in 0 blocks +==24332== still reachable: 24 bytes in 2 blocks +==24332== suppressed: 618,346 bytes in 8,246 blocks +==24332== Reachable blocks (those to which a pointer was found) are not shown. +==24332== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24332== +==24332== For lists of detected and suppressed errors, rerun with: -s +==24332== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestHdf5ToVisualizerConverters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHdf5ToVisualizerConverters_valgrind.txt new file mode 100644 index 000000000..6d0305548 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHdf5ToVisualizerConverters_valgrind.txt @@ -0,0 +1,73 @@ +==43901== Memcheck, a memory error detector +==43901== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43901== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43901== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info +==43901== Parent PID: 24057 +==43901== +==43901== +==43901== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43901== Open file descriptor 12: +==43901== at 0xA8B607D: pipe (pipe.c:29) +==43901== by 0x1432F07D: ??? +==43901== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43901== by 0xBFAF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xBF48D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xAC3FD38: PetscInitialize (pinit.c:924) +==43901== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43901== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43901== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43901== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43901== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43901== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43901== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43901== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43901== +==43901== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43901== at 0xA8BAA1C: __open_nocancel (open64_nocancel.c:39) +==43901== by 0xA83EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43901== by 0xA1DD822: ??? +==43901== by 0xA1DD96F: ??? +==43901== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43901== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43901== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43901== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43901== by 0xBFAF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xBF48D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43901== by 0xAC3FD38: PetscInitialize (pinit.c:924) +==43901== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43901== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43901== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43901== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43901== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43901== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43901== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43901== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) +==43901== +==43901== Open file descriptor 158: +==43901== +==43901== +==43901== Open file descriptor 155: +==43901== +==43901== +==43901== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt +==43901== +==43901== +==43901== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43901== +==43901== +==43901== +==43901== HEAP SUMMARY: +==43901== in use at exit: 618,354 bytes in 8,238 blocks +==43901== total heap usage: 120,271 allocs, 112,033 frees, 1,366,198,361 bytes allocated +==43901== +==43901== LEAK SUMMARY: +==43901== definitely lost: 0 bytes in 0 blocks +==43901== indirectly lost: 0 bytes in 0 blocks +==43901== possibly lost: 0 bytes in 0 blocks +==43901== still reachable: 24 bytes in 2 blocks +==43901== suppressed: 618,330 bytes in 8,236 blocks +==43901== Reachable blocks (those to which a pointer was found) are not shown. +==43901== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43901== +==43901== For lists of detected and suppressed errors, rerun with: -s +==43901== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHeartConfig_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeartConfig_valgrind.txt new file mode 100644 index 000000000..fbff887e5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeartConfig_valgrind.txt @@ -0,0 +1,73 @@ +==44180== Memcheck, a memory error detector +==44180== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44180== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44180== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartConfig -malloc_debug -malloc_dump -memory_info +==44180== Parent PID: 24057 +==44180== +==44180== +==44180== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44180== Open file descriptor 12: +==44180== at 0xBA9F07D: pipe (pipe.c:29) +==44180== by 0x1432F07D: ??? +==44180== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44180== by 0xB38D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44180== by 0xB326D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44180== by 0xA01DD38: PetscInitialize (pinit.c:924) +==44180== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44180== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44180== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==44180== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44180== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44180== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44180== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44180== by 0x174125: main (TestHeartConfig.cpp:19) +==44180== +==44180== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44180== at 0xBAA3A1C: __open_nocancel (open64_nocancel.c:39) +==44180== by 0xBA27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44180== by 0x9ECF822: ??? +==44180== by 0x9ECF96F: ??? +==44180== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44180== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44180== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44180== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44180== by 0xB38D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44180== by 0xB326D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44180== by 0xA01DD38: PetscInitialize (pinit.c:924) +==44180== by 0x9E8F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44180== by 0x9E8F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44180== by 0x17E1E7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==44180== by 0x175CFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44180== by 0x179100: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44180== by 0x178FA0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44180== by 0x179637: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44180== by 0x174125: main (TestHeartConfig.cpp:19) +==44180== +==44180== Open file descriptor 158: +==44180== +==44180== +==44180== Open file descriptor 155: +==44180== +==44180== +==44180== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartConfig_valgrind.txt +==44180== +==44180== +==44180== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44180== +==44180== +==44180== +==44180== HEAP SUMMARY: +==44180== in use at exit: 618,354 bytes in 8,238 blocks +==44180== total heap usage: 2,320,355 allocs, 2,312,117 frees, 2,008,577,483 bytes allocated +==44180== +==44180== LEAK SUMMARY: +==44180== definitely lost: 0 bytes in 0 blocks +==44180== indirectly lost: 0 bytes in 0 blocks +==44180== possibly lost: 0 bytes in 0 blocks +==44180== still reachable: 24 bytes in 2 blocks +==44180== suppressed: 618,330 bytes in 8,236 blocks +==44180== Reachable blocks (those to which a pointer was found) are not shown. +==44180== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44180== +==44180== For lists of detected and suppressed errors, rerun with: -s +==44180== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHeartEventHandler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeartEventHandler_valgrind.txt new file mode 100644 index 000000000..5cc2c86fd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeartEventHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24182== Memcheck, a memory error detector +==24182== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24182== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24182== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHeartEventHandler -malloc_debug -malloc_dump -memory_info +==24182== Parent PID: 24057 +==24182== +==24182== +==24182== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24182== Open file descriptor 12: +==24182== at 0x4DEB07D: pipe (pipe.c:29) +==24182== by 0xAEA307D: ??? +==24182== by 0x643A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24182== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24182== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24182== by 0x5036D38: PetscInitialize (pinit.c:924) +==24182== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24182== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24182== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24182== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24182== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24182== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24182== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24182== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24182== +==24182== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24182== at 0x4DEFA1C: __open_nocancel (open64_nocancel.c:39) +==24182== by 0x4D73BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24182== by 0x493A822: ??? +==24182== by 0x493A96F: ??? +==24182== by 0x64E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24182== by 0x64E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24182== by 0x6497922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24182== by 0x643A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24182== by 0x4A38418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24182== by 0x49D1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24182== by 0x5036D38: PetscInitialize (pinit.c:924) +==24182== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24182== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24182== by 0x115454: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24182== by 0x11064D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24182== by 0x1134F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24182== by 0x113396: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24182== by 0x113A2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24182== by 0x10EA75: main (TestHeartEventHandler.cpp:19) +==24182== +==24182== Open file descriptor 158: +==24182== +==24182== +==24182== Open file descriptor 155: +==24182== +==24182== +==24182== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartEventHandler_valgrind.txt +==24182== +==24182== +==24182== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24182== +==24182== +==24182== +==24182== HEAP SUMMARY: +==24182== in use at exit: 617,874 bytes in 8,238 blocks +==24182== total heap usage: 44,954 allocs, 36,716 frees, 1,338,164,727 bytes allocated +==24182== +==24182== LEAK SUMMARY: +==24182== definitely lost: 0 bytes in 0 blocks +==24182== indirectly lost: 0 bytes in 0 blocks +==24182== possibly lost: 0 bytes in 0 blocks +==24182== still reachable: 24 bytes in 2 blocks +==24182== suppressed: 617,850 bytes in 8,236 blocks +==24182== Reachable blocks (those to which a pointer was found) are not shown. +==24182== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24182== +==24182== For lists of detected and suppressed errors, rerun with: -s +==24182== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestHeartFileFinder_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeartFileFinder_valgrind.txt new file mode 100644 index 000000000..d8f292a6c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeartFileFinder_valgrind.txt @@ -0,0 +1,73 @@ +==44206== Memcheck, a memory error detector +==44206== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44206== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44206== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartFileFinder -malloc_debug -malloc_dump -memory_info +==44206== Parent PID: 24057 +==44206== +==44206== +==44206== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44206== Open file descriptor 12: +==44206== at 0x856F07D: pipe (pipe.c:29) +==44206== by 0x1432F07D: ??? +==44206== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44206== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44206== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44206== by 0x88FAD38: PetscInitialize (pinit.c:924) +==44206== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44206== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44206== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44206== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44206== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44206== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44206== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44206== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==44206== +==44206== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44206== at 0x8573A1C: __open_nocancel (open64_nocancel.c:39) +==44206== by 0x84F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44206== by 0x81DB822: ??? +==44206== by 0x81DB96F: ??? +==44206== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44206== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44206== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44206== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44206== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44206== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44206== by 0x88FAD38: PetscInitialize (pinit.c:924) +==44206== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44206== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44206== by 0x11F18E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44206== by 0x11A2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44206== by 0x11C9B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44206== by 0x11C8AB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44206== by 0x11CEBF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44206== by 0x118AB5: main (TestHeartFileFinder.cpp:18) +==44206== +==44206== Open file descriptor 158: +==44206== +==44206== +==44206== Open file descriptor 155: +==44206== +==44206== +==44206== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartFileFinder_valgrind.txt +==44206== +==44206== +==44206== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44206== +==44206== +==44206== +==44206== HEAP SUMMARY: +==44206== in use at exit: 618,354 bytes in 8,238 blocks +==44206== total heap usage: 48,969 allocs, 40,731 frees, 1,338,596,531 bytes allocated +==44206== +==44206== LEAK SUMMARY: +==44206== definitely lost: 0 bytes in 0 blocks +==44206== indirectly lost: 0 bytes in 0 blocks +==44206== possibly lost: 0 bytes in 0 blocks +==44206== still reachable: 24 bytes in 2 blocks +==44206== suppressed: 618,330 bytes in 8,236 blocks +==44206== Reachable blocks (those to which a pointer was found) are not shown. +==44206== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44206== +==44206== For lists of detected and suppressed errors, rerun with: -s +==44206== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHeartGeometryInformation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeartGeometryInformation_valgrind.txt new file mode 100644 index 000000000..fcfc2bb10 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeartGeometryInformation_valgrind.txt @@ -0,0 +1,73 @@ +==44207== Memcheck, a memory error detector +==44207== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44207== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44207== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartGeometryInformation -malloc_debug -malloc_dump -memory_info +==44207== Parent PID: 24057 +==44207== +==44207== +==44207== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44207== Open file descriptor 12: +==44207== at 0xA51707D: pipe (pipe.c:29) +==44207== by 0x1432F07D: ??? +==44207== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44207== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44207== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44207== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==44207== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44207== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44207== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44207== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44207== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44207== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44207== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44207== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==44207== +==44207== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44207== at 0xA51BA1C: __open_nocancel (open64_nocancel.c:39) +==44207== by 0xA49FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44207== by 0x9E40822: ??? +==44207== by 0x9E4096F: ??? +==44207== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44207== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44207== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44207== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44207== by 0xBC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44207== by 0xBBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44207== by 0xA8A2D38: PetscInitialize (pinit.c:924) +==44207== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44207== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44207== by 0x11C60C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44207== by 0x117A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44207== by 0x11A4EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44207== by 0x11A38E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44207== by 0x11AA25: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44207== by 0x115E75: main (TestHeartGeometryInformation.cpp:19) +==44207== +==44207== Open file descriptor 158: +==44207== +==44207== +==44207== Open file descriptor 155: +==44207== +==44207== +==44207== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartGeometryInformation_valgrind.txt +==44207== +==44207== +==44207== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44207== +==44207== +==44207== +==44207== HEAP SUMMARY: +==44207== in use at exit: 618,281 bytes in 8,234 blocks +==44207== total heap usage: 2,705,973 allocs, 2,697,739 frees, 1,653,759,976 bytes allocated +==44207== +==44207== LEAK SUMMARY: +==44207== definitely lost: 0 bytes in 0 blocks +==44207== indirectly lost: 0 bytes in 0 blocks +==44207== possibly lost: 0 bytes in 0 blocks +==44207== still reachable: 24 bytes in 2 blocks +==44207== suppressed: 618,257 bytes in 8,232 blocks +==44207== Reachable blocks (those to which a pointer was found) are not shown. +==44207== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44207== +==44207== For lists of detected and suppressed errors, rerun with: -s +==44207== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestHeartRegionCodes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeartRegionCodes_valgrind.txt new file mode 100644 index 000000000..f853b2e95 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeartRegionCodes_valgrind.txt @@ -0,0 +1,36 @@ +==44214== Memcheck, a memory error detector +==44214== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44214== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44214== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeartRegionCodes -malloc_debug -malloc_dump -memory_info +==44214== Parent PID: 24057 +==44214== +==44214== +==44214== FILE DESCRIPTORS: 7 open (3 std) at exit. +==44214== Open file descriptor 158: +==44214== +==44214== +==44214== Open file descriptor 155: +==44214== +==44214== +==44214== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeartRegionCodes_valgrind.txt +==44214== +==44214== +==44214== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44214== +==44214== +==44214== +==44214== HEAP SUMMARY: +==44214== in use at exit: 24 bytes in 2 blocks +==44214== total heap usage: 7,159 allocs, 7,157 frees, 732,297 bytes allocated +==44214== +==44214== LEAK SUMMARY: +==44214== definitely lost: 0 bytes in 0 blocks +==44214== indirectly lost: 0 bytes in 0 blocks +==44214== possibly lost: 0 bytes in 0 blocks +==44214== still reachable: 24 bytes in 2 blocks +==44214== suppressed: 0 bytes in 0 blocks +==44214== Reachable blocks (those to which a pointer was found) are not shown. +==44214== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44214== +==44214== For lists of detected and suppressed errors, rerun with: -s +==44214== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestHelloWorld_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHelloWorld_valgrind.txt new file mode 100644 index 000000000..64c49bb01 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHelloWorld_valgrind.txt @@ -0,0 +1,73 @@ +==24183== Memcheck, a memory error detector +==24183== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24183== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestHelloWorld -malloc_debug -malloc_dump -memory_info +==24183== Parent PID: 24057 +==24183== +==24183== +==24183== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24183== Open file descriptor 12: +==24183== at 0x4CB207D: pipe (pipe.c:29) +==24183== by 0xAEA507D: ??? +==24183== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24183== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24183== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24183== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24183== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24183== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24183== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24183== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24183== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24183== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24183== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24183== by 0x10B355: main (TestHelloWorld.cpp:18) +==24183== +==24183== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24183== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24183== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24183== by 0x493A822: ??? +==24183== by 0x493A96F: ??? +==24183== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24183== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24183== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24183== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24183== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24183== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24183== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24183== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24183== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24183== by 0x110C3A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24183== by 0x10CB53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24183== by 0x10ED04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24183== by 0x10EC00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24183== by 0x10F213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24183== by 0x10B355: main (TestHelloWorld.cpp:18) +==24183== +==24183== Open file descriptor 158: +==24183== +==24183== +==24183== Open file descriptor 155: +==24183== +==24183== +==24183== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHelloWorld_valgrind.txt +==24183== +==24183== +==24183== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24183== +==24183== +==24183== +==24183== HEAP SUMMARY: +==24183== in use at exit: 617,874 bytes in 8,238 blocks +==24183== total heap usage: 44,912 allocs, 36,674 frees, 1,338,160,155 bytes allocated +==24183== +==24183== LEAK SUMMARY: +==24183== definitely lost: 0 bytes in 0 blocks +==24183== indirectly lost: 0 bytes in 0 blocks +==24183== possibly lost: 0 bytes in 0 blocks +==24183== still reachable: 24 bytes in 2 blocks +==24183== suppressed: 617,850 bytes in 8,236 blocks +==24183== Reachable blocks (those to which a pointer was found) are not shown. +==24183== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24183== +==24183== For lists of detected and suppressed errors, rerun with: -s +==24183== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestHeterogeneousConductivities_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeterogeneousConductivities_valgrind.txt new file mode 100644 index 000000000..dc864cedc --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeterogeneousConductivities_valgrind.txt @@ -0,0 +1,73 @@ +==44226== Memcheck, a memory error detector +==44226== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==44226== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==44226== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHeterogeneousConductivities -malloc_debug -malloc_dump -memory_info +==44226== Parent PID: 24057 +==44226== +==44226== +==44226== FILE DESCRIPTORS: 9 open (3 std) at exit. +==44226== Open file descriptor 12: +==44226== at 0xA7EA07D: pipe (pipe.c:29) +==44226== by 0x1432F07D: ??? +==44226== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44226== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44226== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44226== by 0xAB73D38: PetscInitialize (pinit.c:924) +==44226== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44226== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44226== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44226== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44226== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44226== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44226== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44226== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==44226== +==44226== Open file descriptor 8: /dev/shm/open_mpi.0000 +==44226== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==44226== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==44226== by 0xA111822: ??? +==44226== by 0xA11196F: ??? +==44226== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44226== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44226== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==44226== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==44226== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44226== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==44226== by 0xAB73D38: PetscInitialize (pinit.c:924) +==44226== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==44226== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==44226== by 0x11BF54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==44226== by 0x1174B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==44226== by 0x119942: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==44226== by 0x11983E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==44226== by 0x119E51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==44226== by 0x115CB5: main (TestHeterogeneousConductivities.cpp:18) +==44226== +==44226== Open file descriptor 158: +==44226== +==44226== +==44226== Open file descriptor 155: +==44226== +==44226== +==44226== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeterogeneousConductivities_valgrind.txt +==44226== +==44226== +==44226== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==44226== +==44226== +==44226== +==44226== HEAP SUMMARY: +==44226== in use at exit: 618,834 bytes in 8,248 blocks +==44226== total heap usage: 201,473 allocs, 193,225 frees, 1,372,226,888 bytes allocated +==44226== +==44226== LEAK SUMMARY: +==44226== definitely lost: 0 bytes in 0 blocks +==44226== indirectly lost: 0 bytes in 0 blocks +==44226== possibly lost: 0 bytes in 0 blocks +==44226== still reachable: 24 bytes in 2 blocks +==44226== suppressed: 618,810 bytes in 8,246 blocks +==44226== Reachable blocks (those to which a pointer was found) are not shown. +==44226== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==44226== +==44226== For lists of detected and suppressed errors, rerun with: -s +==44226== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHeun2IvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHeun2IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..a6cdde75c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHeun2IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25081== Memcheck, a memory error detector +==25081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25081== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestHeun2IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25081== Parent PID: 24057 +==25081== +==25081== +==25081== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25081== Open file descriptor 12: +==25081== at 0x503907D: pipe (pipe.c:29) +==25081== by 0xB1E607D: ??? +==25081== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25081== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25081== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25081== by 0x5308D38: PetscInitialize (pinit.c:924) +==25081== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25081== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25081== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25081== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25081== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25081== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25081== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25081== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==25081== +==25081== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25081== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25081== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25081== by 0x4B7C822: ??? +==25081== by 0x4B7C96F: ??? +==25081== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25081== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25081== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25081== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25081== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25081== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25081== by 0x5308D38: PetscInitialize (pinit.c:924) +==25081== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25081== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25081== by 0x127368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25081== by 0x1218FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25081== by 0x1243AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25081== by 0x12424F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25081== by 0x1248E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25081== by 0x11EEC5: main (TestHeun2IvpOdeSolver.cpp:19) +==25081== +==25081== Open file descriptor 158: +==25081== +==25081== +==25081== Open file descriptor 155: +==25081== +==25081== +==25081== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHeun2IvpOdeSolver_valgrind.txt +==25081== +==25081== +==25081== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25081== +==25081== +==25081== +==25081== HEAP SUMMARY: +==25081== in use at exit: 617,938 bytes in 8,238 blocks +==25081== total heap usage: 93,032 allocs, 84,794 frees, 1,339,245,973 bytes allocated +==25081== +==25081== LEAK SUMMARY: +==25081== definitely lost: 0 bytes in 0 blocks +==25081== indirectly lost: 0 bytes in 0 blocks +==25081== possibly lost: 0 bytes in 0 blocks +==25081== still reachable: 24 bytes in 2 blocks +==25081== suppressed: 617,914 bytes in 8,236 blocks +==25081== Reachable blocks (those to which a pointer was found) are not shown. +==25081== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25081== +==25081== For lists of detected and suppressed errors, rerun with: -s +==25081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt new file mode 100644 index 000000000..93c469f86 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==42125== Memcheck, a memory error detector +==42125== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42125== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42125== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info +==42125== Parent PID: 24057 +==42125== +==42125== +==42125== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42125== Open file descriptor 12: +==42125== at 0x856F07D: pipe (pipe.c:29) +==42125== by 0x1432F07D: ??? +==42125== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42125== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42125== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42125== by 0x88FAD38: PetscInitialize (pinit.c:924) +==42125== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42125== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42125== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42125== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42125== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42125== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42125== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42125== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==42125== +==42125== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42125== at 0x8573A1C: __open_nocancel (open64_nocancel.c:39) +==42125== by 0x84F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42125== by 0x81DB822: ??? +==42125== by 0x81DB96F: ??? +==42125== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42125== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42125== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42125== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42125== by 0x9C6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42125== by 0x9C03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42125== by 0x88FAD38: PetscInitialize (pinit.c:924) +==42125== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42125== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42125== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42125== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42125== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42125== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42125== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42125== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) +==42125== +==42125== Open file descriptor 158: +==42125== +==42125== +==42125== Open file descriptor 155: +==42125== +==42125== +==42125== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt +==42125== +==42125== +==42125== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42125== +==42125== +==42125== +==42125== HEAP SUMMARY: +==42125== in use at exit: 618,354 bytes in 8,238 blocks +==42125== total heap usage: 49,005 allocs, 40,767 frees, 1,338,536,009 bytes allocated +==42125== +==42125== LEAK SUMMARY: +==42125== definitely lost: 0 bytes in 0 blocks +==42125== indirectly lost: 0 bytes in 0 blocks +==42125== possibly lost: 0 bytes in 0 blocks +==42125== still reachable: 24 bytes in 2 blocks +==42125== suppressed: 618,330 bytes in 8,236 blocks +==42125== Reachable blocks (those to which a pointer was found) are not shown. +==42125== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42125== +==42125== For lists of detected and suppressed errors, rerun with: -s +==42125== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHoneycombMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..1d3c3b986 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24585== Memcheck, a memory error detector +==24585== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24585== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24585== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24585== Parent PID: 24057 +==24585== +==24585== +==24585== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24585== Open file descriptor 12: +==24585== at 0x81F807D: pipe (pipe.c:29) +==24585== by 0x100CC07D: ??? +==24585== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24585== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24585== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24585== by 0x6686D38: PetscInitialize (pinit.c:924) +==24585== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24585== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24585== by 0x11C935: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24585== by 0x1177CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24585== by 0x11A508: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24585== by 0x11A3A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24585== by 0x11AA3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24585== by 0x115BF5: main (TestHoneycombMeshGenerator.cpp:19) +==24585== +==24585== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24585== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24585== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24585== by 0x791B822: ??? +==24585== by 0x791B96F: ??? +==24585== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24585== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24585== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24585== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24585== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24585== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24585== by 0x6686D38: PetscInitialize (pinit.c:924) +==24585== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24585== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24585== by 0x11C935: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24585== by 0x1177CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24585== by 0x11A508: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24585== by 0x11A3A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24585== by 0x11AA3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24585== by 0x115BF5: main (TestHoneycombMeshGenerator.cpp:19) +==24585== +==24585== Open file descriptor 158: +==24585== +==24585== +==24585== Open file descriptor 155: +==24585== +==24585== +==24585== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombMeshGenerator_valgrind.txt +==24585== +==24585== +==24585== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24585== +==24585== +==24585== +==24585== HEAP SUMMARY: +==24585== in use at exit: 620,794 bytes in 8,239 blocks +==24585== total heap usage: 1,200,545 allocs, 1,192,306 frees, 1,378,998,307 bytes allocated +==24585== +==24585== LEAK SUMMARY: +==24585== definitely lost: 0 bytes in 0 blocks +==24585== indirectly lost: 0 bytes in 0 blocks +==24585== possibly lost: 0 bytes in 0 blocks +==24585== still reachable: 2,576 bytes in 3 blocks +==24585== suppressed: 618,218 bytes in 8,236 blocks +==24585== Reachable blocks (those to which a pointer was found) are not shown. +==24585== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24585== +==24585== For lists of detected and suppressed errors, rerun with: -s +==24585== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..cee9943f8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24726== Memcheck, a memory error detector +==24726== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24726== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24726== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24726== Parent PID: 24057 +==24726== +==24726== +==24726== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24726== Open file descriptor 12: +==24726== at 0x6C5C07D: pipe (pipe.c:29) +==24726== by 0x100CC07D: ??? +==24726== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24726== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24726== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24726== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24726== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24726== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24726== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24726== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24726== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24726== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24726== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24726== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24726== +==24726== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24726== at 0x6C60A1C: __open_nocancel (open64_nocancel.c:39) +==24726== by 0x6BE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24726== by 0x659D822: ??? +==24726== by 0x659D96F: ??? +==24726== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24726== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24726== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24726== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24726== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24726== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24726== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24726== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24726== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24726== by 0x1146C4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24726== by 0x110053: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24726== by 0x112582: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24726== by 0x11247D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24726== by 0x112A91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24726== by 0x10E855: main (TestHoneycombVertexMeshGenerator.cpp:18) +==24726== +==24726== Open file descriptor 158: +==24726== +==24726== +==24726== Open file descriptor 155: +==24726== +==24726== +==24726== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHoneycombVertexMeshGenerator_valgrind.txt +==24726== +==24726== +==24726== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24726== +==24726== +==24726== +==24726== HEAP SUMMARY: +==24726== in use at exit: 618,242 bytes in 8,238 blocks +==24726== total heap usage: 412,636 allocs, 404,398 frees, 1,357,654,194 bytes allocated +==24726== +==24726== LEAK SUMMARY: +==24726== definitely lost: 0 bytes in 0 blocks +==24726== indirectly lost: 0 bytes in 0 blocks +==24726== possibly lost: 0 bytes in 0 blocks +==24726== still reachable: 24 bytes in 2 blocks +==24726== suppressed: 618,218 bytes in 8,236 blocks +==24726== Reachable blocks (those to which a pointer was found) are not shown. +==24726== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24726== +==24726== For lists of detected and suppressed errors, rerun with: -s +==24726== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundary2dArrays_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundary2dArrays_valgrind.txt new file mode 100644 index 000000000..ff41f78a0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundary2dArrays_valgrind.txt @@ -0,0 +1,73 @@ +==24843== Memcheck, a memory error detector +==24843== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24843== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24843== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundary2dArrays -malloc_debug -malloc_dump -memory_info +==24843== Parent PID: 24057 +==24843== +==24843== +==24843== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24843== Open file descriptor 12: +==24843== at 0x81F807D: pipe (pipe.c:29) +==24843== by 0x100CC07D: ??? +==24843== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24843== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24843== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24843== by 0x6686D38: PetscInitialize (pinit.c:924) +==24843== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24843== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24843== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24843== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24843== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24843== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24843== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24843== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24843== +==24843== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24843== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24843== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24843== by 0x791B822: ??? +==24843== by 0x791B96F: ??? +==24843== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24843== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24843== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24843== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24843== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24843== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24843== by 0x6686D38: PetscInitialize (pinit.c:924) +==24843== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24843== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24843== by 0x12E481: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24843== by 0x129F13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24843== by 0x12C4B2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24843== by 0x12C3AD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24843== by 0x12C9C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24843== by 0x128715: main (TestImmersedBoundary2dArrays.cpp:18) +==24843== +==24843== Open file descriptor 158: +==24843== +==24843== +==24843== Open file descriptor 155: +==24843== +==24843== +==24843== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundary2dArrays_valgrind.txt +==24843== +==24843== +==24843== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24843== +==24843== +==24843== +==24843== HEAP SUMMARY: +==24843== in use at exit: 620,794 bytes in 8,239 blocks +==24843== total heap usage: 49,875 allocs, 41,636 frees, 1,345,274,657 bytes allocated +==24843== +==24843== LEAK SUMMARY: +==24843== definitely lost: 0 bytes in 0 blocks +==24843== indirectly lost: 0 bytes in 0 blocks +==24843== possibly lost: 0 bytes in 0 blocks +==24843== still reachable: 2,576 bytes in 3 blocks +==24843== suppressed: 618,218 bytes in 8,236 blocks +==24843== Reachable blocks (those to which a pointer was found) are not shown. +==24843== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24843== +==24843== For lists of detected and suppressed errors, rerun with: -s +==24843== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryCellPopulation_valgrind.txt new file mode 100644 index 000000000..30909bcb8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26147== Memcheck, a memory error detector +==26147== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26147== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26147== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryCellPopulation -malloc_debug -malloc_dump -memory_info +==26147== Parent PID: 24057 +==26147== +==26147== +==26147== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26147== Open file descriptor 12: +==26147== at 0x10CFA07D: pipe (pipe.c:29) +==26147== by 0x196B407D: ??? +==26147== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26147== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26147== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26147== by 0xF292D38: PetscInitialize (pinit.c:924) +==26147== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26147== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26147== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26147== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26147== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26147== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26147== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26147== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==26147== +==26147== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26147== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26147== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26147== by 0xF144822: ??? +==26147== by 0xF14496F: ??? +==26147== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26147== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26147== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26147== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26147== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26147== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26147== by 0xF292D38: PetscInitialize (pinit.c:924) +==26147== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26147== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26147== by 0x17AFD3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26147== by 0x1732C9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26147== by 0x1765FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26147== by 0x17649C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26147== by 0x176B33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26147== by 0x1716E5: main (TestImmersedBoundaryCellPopulation.cpp:19) +==26147== +==26147== Open file descriptor 158: +==26147== +==26147== +==26147== Open file descriptor 155: +==26147== +==26147== +==26147== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryCellPopulation_valgrind.txt +==26147== +==26147== +==26147== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26147== +==26147== +==26147== +==26147== HEAP SUMMARY: +==26147== in use at exit: 618,370 bytes in 8,239 blocks +==26147== total heap usage: 114,145 allocs, 105,906 frees, 1,385,784,973 bytes allocated +==26147== +==26147== LEAK SUMMARY: +==26147== definitely lost: 0 bytes in 0 blocks +==26147== indirectly lost: 0 bytes in 0 blocks +==26147== possibly lost: 0 bytes in 0 blocks +==26147== still reachable: 56 bytes in 3 blocks +==26147== suppressed: 618,314 bytes in 8,236 blocks +==26147== Reachable blocks (those to which a pointer was found) are not shown. +==26147== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26147== +==26147== For lists of detected and suppressed errors, rerun with: -s +==26147== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryDivisionRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryDivisionRules_valgrind.txt new file mode 100644 index 000000000..3014215b5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26148== Memcheck, a memory error detector +==26148== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26148== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26148== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryDivisionRules -malloc_debug -malloc_dump -memory_info +==26148== Parent PID: 24057 +==26148== +==26148== +==26148== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26148== Open file descriptor 12: +==26148== at 0x10CFA07D: pipe (pipe.c:29) +==26148== by 0x196B407D: ??? +==26148== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26148== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0xF292D38: PetscInitialize (pinit.c:924) +==26148== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26148== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26148== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26148== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26148== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26148== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26148== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26148== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26148== +==26148== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26148== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26148== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26148== by 0xF144822: ??? +==26148== by 0xF14496F: ??? +==26148== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26148== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26148== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26148== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26148== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26148== by 0xF292D38: PetscInitialize (pinit.c:924) +==26148== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26148== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26148== by 0x13B60B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26148== by 0x136903: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26148== by 0x138ED8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26148== by 0x138DD4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26148== by 0x1393E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26148== by 0x135105: main (TestImmersedBoundaryDivisionRules.cpp:18) +==26148== +==26148== Open file descriptor 158: +==26148== +==26148== +==26148== Open file descriptor 155: +==26148== +==26148== +==26148== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryDivisionRules_valgrind.txt +==26148== +==26148== +==26148== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26148== +==26148== +==26148== +==26148== HEAP SUMMARY: +==26148== in use at exit: 618,370 bytes in 8,239 blocks +==26148== total heap usage: 53,312 allocs, 45,073 frees, 1,339,217,910 bytes allocated +==26148== +==26148== LEAK SUMMARY: +==26148== definitely lost: 0 bytes in 0 blocks +==26148== indirectly lost: 0 bytes in 0 blocks +==26148== possibly lost: 0 bytes in 0 blocks +==26148== still reachable: 56 bytes in 3 blocks +==26148== suppressed: 618,314 bytes in 8,236 blocks +==26148== Reachable blocks (those to which a pointer was found) are not shown. +==26148== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26148== +==26148== For lists of detected and suppressed errors, rerun with: -s +==26148== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryElement_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryElement_valgrind.txt new file mode 100644 index 000000000..d56a607bb --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryElement_valgrind.txt @@ -0,0 +1,73 @@ +==24912== Memcheck, a memory error detector +==24912== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24912== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24912== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryElement -malloc_debug -malloc_dump -memory_info +==24912== Parent PID: 24057 +==24912== +==24912== +==24912== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24912== Open file descriptor 12: +==24912== at 0x7DCC07D: pipe (pipe.c:29) +==24912== by 0x100CC07D: ??? +==24912== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24912== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24912== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24912== by 0x6686D38: PetscInitialize (pinit.c:924) +==24912== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24912== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24912== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24912== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24912== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24912== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24912== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24912== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24912== +==24912== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24912== at 0x7DD0A1C: __open_nocancel (open64_nocancel.c:39) +==24912== by 0x7D54BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24912== by 0x791B822: ??? +==24912== by 0x791B96F: ??? +==24912== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24912== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24912== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24912== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24912== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24912== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24912== by 0x6686D38: PetscInitialize (pinit.c:924) +==24912== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24912== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24912== by 0x119A65: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24912== by 0x11544D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24912== by 0x117AA2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24912== by 0x117942: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24912== by 0x117FD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24912== by 0x113875: main (TestImmersedBoundaryElement.cpp:19) +==24912== +==24912== Open file descriptor 158: +==24912== +==24912== +==24912== Open file descriptor 155: +==24912== +==24912== +==24912== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryElement_valgrind.txt +==24912== +==24912== +==24912== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24912== +==24912== +==24912== +==24912== HEAP SUMMARY: +==24912== in use at exit: 618,242 bytes in 8,238 blocks +==24912== total heap usage: 47,353 allocs, 39,115 frees, 1,338,386,292 bytes allocated +==24912== +==24912== LEAK SUMMARY: +==24912== definitely lost: 0 bytes in 0 blocks +==24912== indirectly lost: 0 bytes in 0 blocks +==24912== possibly lost: 0 bytes in 0 blocks +==24912== still reachable: 24 bytes in 2 blocks +==24912== suppressed: 618,218 bytes in 8,236 blocks +==24912== Reachable blocks (those to which a pointer was found) are not shown. +==24912== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24912== +==24912== For lists of detected and suppressed errors, rerun with: -s +==24912== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryFftInterface_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryFftInterface_valgrind.txt new file mode 100644 index 000000000..66a495885 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryFftInterface_valgrind.txt @@ -0,0 +1,73 @@ +==24919== Memcheck, a memory error detector +==24919== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24919== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24919== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryFftInterface -malloc_debug -malloc_dump -memory_info +==24919== Parent PID: 24057 +==24919== +==24919== +==24919== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24919== Open file descriptor 12: +==24919== at 0x811107D: pipe (pipe.c:29) +==24919== by 0x100CC07D: ??? +==24919== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24919== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24919== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24919== by 0x6686D38: PetscInitialize (pinit.c:924) +==24919== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24919== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24919== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24919== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24919== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24919== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24919== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24919== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24919== +==24919== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24919== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24919== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24919== by 0x791B822: ??? +==24919== by 0x791B96F: ??? +==24919== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24919== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24919== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24919== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24919== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24919== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24919== by 0x6686D38: PetscInitialize (pinit.c:924) +==24919== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24919== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24919== by 0x11A441: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24919== by 0x115DD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24919== by 0x1184B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24919== by 0x1183B3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24919== by 0x1189C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24919== by 0x1145D5: main (TestImmersedBoundaryFftInterface.cpp:18) +==24919== +==24919== Open file descriptor 158: +==24919== +==24919== +==24919== Open file descriptor 155: +==24919== +==24919== +==24919== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryFftInterface_valgrind.txt +==24919== +==24919== +==24919== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24919== +==24919== +==24919== +==24919== HEAP SUMMARY: +==24919== in use at exit: 618,242 bytes in 8,238 blocks +==24919== total heap usage: 48,770 allocs, 40,532 frees, 1,346,895,639 bytes allocated +==24919== +==24919== LEAK SUMMARY: +==24919== definitely lost: 0 bytes in 0 blocks +==24919== indirectly lost: 0 bytes in 0 blocks +==24919== possibly lost: 0 bytes in 0 blocks +==24919== still reachable: 24 bytes in 2 blocks +==24919== suppressed: 618,218 bytes in 8,236 blocks +==24919== Reachable blocks (those to which a pointer was found) are not shown. +==24919== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24919== +==24919== For lists of detected and suppressed errors, rerun with: -s +==24919== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryForces_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryForces_valgrind.txt new file mode 100644 index 000000000..a61ab5042 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryForces_valgrind.txt @@ -0,0 +1,73 @@ +==26173== Memcheck, a memory error detector +==26173== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26173== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26173== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundaryForces -malloc_debug -malloc_dump -memory_info +==26173== Parent PID: 24057 +==26173== +==26173== +==26173== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26173== Open file descriptor 12: +==26173== at 0x10D8907D: pipe (pipe.c:29) +==26173== by 0x196B407D: ??? +==26173== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26173== by 0x10691418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0x1062AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0xF321D38: PetscInitialize (pinit.c:924) +==26173== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26173== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26173== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26173== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26173== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26173== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26173== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26173== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26173== +==26173== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26173== at 0x10D8DA1C: __open_nocancel (open64_nocancel.c:39) +==26173== by 0x10D11BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26173== by 0xF1D3822: ??? +==26173== by 0xF1D396F: ??? +==26173== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26173== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26173== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26173== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26173== by 0x10691418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0x1062AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26173== by 0xF321D38: PetscInitialize (pinit.c:924) +==26173== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26173== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26173== by 0x14A869: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26173== by 0x1430BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26173== by 0x145F70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26173== by 0x145E10: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26173== by 0x1464A7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26173== by 0x1414E5: main (TestImmersedBoundaryForces.cpp:19) +==26173== +==26173== Open file descriptor 158: +==26173== +==26173== +==26173== Open file descriptor 155: +==26173== +==26173== +==26173== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryForces_valgrind.txt +==26173== +==26173== +==26173== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26173== +==26173== +==26173== +==26173== HEAP SUMMARY: +==26173== in use at exit: 618,370 bytes in 8,239 blocks +==26173== total heap usage: 63,279 allocs, 55,040 frees, 1,343,086,392 bytes allocated +==26173== +==26173== LEAK SUMMARY: +==26173== definitely lost: 0 bytes in 0 blocks +==26173== indirectly lost: 0 bytes in 0 blocks +==26173== possibly lost: 0 bytes in 0 blocks +==26173== still reachable: 56 bytes in 3 blocks +==26173== suppressed: 618,314 bytes in 8,236 blocks +==26173== Reachable blocks (those to which a pointer was found) are not shown. +==26173== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26173== +==26173== For lists of detected and suppressed errors, rerun with: -s +==26173== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..557f67552 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24927== Memcheck, a memory error detector +==24927== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24927== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24927== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24927== Parent PID: 24057 +==24927== +==24927== +==24927== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24927== Open file descriptor 12: +==24927== at 0x811107D: pipe (pipe.c:29) +==24927== by 0x100CC07D: ??? +==24927== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24927== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x6686D38: PetscInitialize (pinit.c:924) +==24927== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24927== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24927== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24927== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24927== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24927== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24927== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24927== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24927== +==24927== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24927== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24927== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24927== by 0x791B822: ??? +==24927== by 0x791B96F: ??? +==24927== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24927== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24927== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24927== by 0x6686D38: PetscInitialize (pinit.c:924) +==24927== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24927== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24927== by 0x11345D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24927== by 0x10EDD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24927== by 0x111410: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24927== by 0x11130B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24927== by 0x11191F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24927== by 0x10D5D5: main (TestImmersedBoundaryHoneycombMeshGenerator.cpp:18) +==24927== +==24927== Open file descriptor 158: +==24927== +==24927== +==24927== Open file descriptor 155: +==24927== +==24927== +==24927== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryHoneycombMeshGenerator_valgrind.txt +==24927== +==24927== +==24927== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24927== +==24927== +==24927== +==24927== HEAP SUMMARY: +==24927== in use at exit: 618,242 bytes in 8,238 blocks +==24927== total heap usage: 51,861 allocs, 43,623 frees, 1,340,453,115 bytes allocated +==24927== +==24927== LEAK SUMMARY: +==24927== definitely lost: 0 bytes in 0 blocks +==24927== indirectly lost: 0 bytes in 0 blocks +==24927== possibly lost: 0 bytes in 0 blocks +==24927== still reachable: 24 bytes in 2 blocks +==24927== suppressed: 618,218 bytes in 8,236 blocks +==24927== Reachable blocks (those to which a pointer was found) are not shown. +==24927== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24927== +==24927== For lists of detected and suppressed errors, rerun with: -s +==24927== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMeshReader_valgrind.txt new file mode 100644 index 000000000..18ec6c6ac --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24937== Memcheck, a memory error detector +==24937== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24937== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24937== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshReader -malloc_debug -malloc_dump -memory_info +==24937== Parent PID: 24057 +==24937== +==24937== +==24937== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24937== Open file descriptor 12: +==24937== at 0x811107D: pipe (pipe.c:29) +==24937== by 0x100CC07D: ??? +==24937== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24937== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24937== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24937== by 0x6686D38: PetscInitialize (pinit.c:924) +==24937== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24937== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24937== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24937== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24937== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24937== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24937== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24937== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24937== +==24937== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24937== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24937== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24937== by 0x791B822: ??? +==24937== by 0x791B96F: ??? +==24937== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24937== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24937== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24937== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24937== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24937== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24937== by 0x6686D38: PetscInitialize (pinit.c:924) +==24937== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24937== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24937== by 0x119F95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24937== by 0x11568D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24937== by 0x117F84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24937== by 0x117E25: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24937== by 0x1184BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24937== by 0x113AB5: main (TestImmersedBoundaryMeshReader.cpp:19) +==24937== +==24937== Open file descriptor 158: +==24937== +==24937== +==24937== Open file descriptor 155: +==24937== +==24937== +==24937== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshReader_valgrind.txt +==24937== +==24937== +==24937== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24937== +==24937== +==24937== +==24937== HEAP SUMMARY: +==24937== in use at exit: 618,242 bytes in 8,238 blocks +==24937== total heap usage: 49,719 allocs, 41,481 frees, 1,339,666,983 bytes allocated +==24937== +==24937== LEAK SUMMARY: +==24937== definitely lost: 0 bytes in 0 blocks +==24937== indirectly lost: 0 bytes in 0 blocks +==24937== possibly lost: 0 bytes in 0 blocks +==24937== still reachable: 24 bytes in 2 blocks +==24937== suppressed: 618,218 bytes in 8,236 blocks +==24937== Reachable blocks (those to which a pointer was found) are not shown. +==24937== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24937== +==24937== For lists of detected and suppressed errors, rerun with: -s +==24937== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMeshWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMeshWriter_valgrind.txt new file mode 100644 index 000000000..9f38fdcbc --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24950== Memcheck, a memory error detector +==24950== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24950== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24950== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshWriter -malloc_debug -malloc_dump -memory_info +==24950== Parent PID: 24057 +==24950== +==24950== +==24950== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24950== Open file descriptor 12: +==24950== at 0x81F807D: pipe (pipe.c:29) +==24950== by 0x100CC07D: ??? +==24950== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24950== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24950== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24950== by 0x6686D38: PetscInitialize (pinit.c:924) +==24950== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24950== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24950== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24950== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24950== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24950== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24950== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24950== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24950== +==24950== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24950== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24950== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24950== by 0x791B822: ??? +==24950== by 0x791B96F: ??? +==24950== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24950== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24950== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24950== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24950== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24950== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24950== by 0x6686D38: PetscInitialize (pinit.c:924) +==24950== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24950== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24950== by 0x12285F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24950== by 0x11C5F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24950== by 0x11EE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24950== by 0x11ED1F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24950== by 0x11F333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24950== by 0x11ADF5: main (TestImmersedBoundaryMeshWriter.cpp:18) +==24950== +==24950== Open file descriptor 158: +==24950== +==24950== +==24950== Open file descriptor 155: +==24950== +==24950== +==24950== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMeshWriter_valgrind.txt +==24950== +==24950== +==24950== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24950== +==24950== +==24950== +==24950== HEAP SUMMARY: +==24950== in use at exit: 618,242 bytes in 8,238 blocks +==24950== total heap usage: 49,816 allocs, 41,578 frees, 1,339,465,068 bytes allocated +==24950== +==24950== LEAK SUMMARY: +==24950== definitely lost: 0 bytes in 0 blocks +==24950== indirectly lost: 0 bytes in 0 blocks +==24950== possibly lost: 0 bytes in 0 blocks +==24950== still reachable: 24 bytes in 2 blocks +==24950== suppressed: 618,218 bytes in 8,236 blocks +==24950== Reachable blocks (those to which a pointer was found) are not shown. +==24950== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24950== +==24950== For lists of detected and suppressed errors, rerun with: -s +==24950== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMesh_valgrind.txt new file mode 100644 index 000000000..4b9226a39 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24936== Memcheck, a memory error detector +==24936== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24936== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24936== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMesh -malloc_debug -malloc_dump -memory_info +==24936== Parent PID: 24057 +==24936== +==24936== +==24936== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24936== Open file descriptor 12: +==24936== at 0x82CB07D: pipe (pipe.c:29) +==24936== by 0x100CC07D: ??? +==24936== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24936== by 0x7AEC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x7A85D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x677CD38: PetscInitialize (pinit.c:924) +==24936== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24936== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24936== by 0x141959: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24936== by 0x13C5BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24936== by 0x13F522: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24936== by 0x13F3C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24936== by 0x13FA59: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24936== by 0x13A9E5: main (TestImmersedBoundaryMesh.cpp:19) +==24936== +==24936== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24936== at 0x82CFA1C: __open_nocancel (open64_nocancel.c:39) +==24936== by 0x8253BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24936== by 0x662C822: ??? +==24936== by 0x662C96F: ??? +==24936== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24936== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24936== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24936== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24936== by 0x7AEC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x7A85D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24936== by 0x677CD38: PetscInitialize (pinit.c:924) +==24936== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24936== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24936== by 0x141959: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24936== by 0x13C5BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24936== by 0x13F522: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24936== by 0x13F3C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24936== by 0x13FA59: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24936== by 0x13A9E5: main (TestImmersedBoundaryMesh.cpp:19) +==24936== +==24936== Open file descriptor 158: +==24936== +==24936== +==24936== Open file descriptor 155: +==24936== +==24936== +==24936== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryMesh_valgrind.txt +==24936== +==24936== +==24936== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24936== +==24936== +==24936== +==24936== HEAP SUMMARY: +==24936== in use at exit: 620,794 bytes in 8,239 blocks +==24936== total heap usage: 94,789 allocs, 86,550 frees, 1,370,841,234 bytes allocated +==24936== +==24936== LEAK SUMMARY: +==24936== definitely lost: 0 bytes in 0 blocks +==24936== indirectly lost: 0 bytes in 0 blocks +==24936== possibly lost: 0 bytes in 0 blocks +==24936== still reachable: 2,576 bytes in 3 blocks +==24936== suppressed: 618,218 bytes in 8,236 blocks +==24936== Reachable blocks (those to which a pointer was found) are not shown. +==24936== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24936== +==24936== For lists of detected and suppressed errors, rerun with: -s +==24936== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt new file mode 100644 index 000000000..b948511c1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24951== Memcheck, a memory error detector +==24951== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24951== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24951== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryPalisadeMeshGenerator -malloc_debug -malloc_dump -memory_info +==24951== Parent PID: 24057 +==24951== +==24951== +==24951== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24951== Open file descriptor 12: +==24951== at 0x811107D: pipe (pipe.c:29) +==24951== by 0x100CC07D: ??? +==24951== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24951== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24951== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24951== by 0x6686D38: PetscInitialize (pinit.c:924) +==24951== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24951== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24951== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24951== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24951== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24951== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24951== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24951== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24951== +==24951== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24951== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24951== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24951== by 0x791B822: ??? +==24951== by 0x791B96F: ??? +==24951== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24951== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24951== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24951== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24951== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24951== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24951== by 0x6686D38: PetscInitialize (pinit.c:924) +==24951== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24951== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24951== by 0x114D1D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24951== by 0x1103ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24951== by 0x112D9A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24951== by 0x112C3A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24951== by 0x1132D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24951== by 0x10E815: main (TestImmersedBoundaryPalisadeMeshGenerator.cpp:19) +==24951== +==24951== Open file descriptor 158: +==24951== +==24951== +==24951== Open file descriptor 155: +==24951== +==24951== +==24951== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundaryPalisadeMeshGenerator_valgrind.txt +==24951== +==24951== +==24951== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24951== +==24951== +==24951== +==24951== HEAP SUMMARY: +==24951== in use at exit: 620,794 bytes in 8,239 blocks +==24951== total heap usage: 57,742 allocs, 49,503 frees, 1,359,244,079 bytes allocated +==24951== +==24951== LEAK SUMMARY: +==24951== definitely lost: 0 bytes in 0 blocks +==24951== indirectly lost: 0 bytes in 0 blocks +==24951== possibly lost: 0 bytes in 0 blocks +==24951== still reachable: 2,576 bytes in 3 blocks +==24951== suppressed: 618,218 bytes in 8,236 blocks +==24951== Reachable blocks (those to which a pointer was found) are not shown. +==24951== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24951== +==24951== For lists of detected and suppressed errors, rerun with: -s +==24951== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundarySimulationModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundarySimulationModifier_valgrind.txt new file mode 100644 index 000000000..83e2a0579 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundarySimulationModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26543== Memcheck, a memory error detector +==26543== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26543== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26543== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySimulationModifier -malloc_debug -malloc_dump -memory_info +==26543== Parent PID: 24057 +==26543== +==26543== +==26543== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26543== Open file descriptor 12: +==26543== at 0x10CFA07D: pipe (pipe.c:29) +==26543== by 0x196B407D: ??? +==26543== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26543== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26543== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26543== by 0xF292D38: PetscInitialize (pinit.c:924) +==26543== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26543== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26543== by 0x147F87: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26543== by 0x14099D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26543== by 0x14393E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26543== by 0x1437DE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26543== by 0x143E75: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26543== by 0x13EDC5: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26543== +==26543== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26543== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26543== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26543== by 0xF144822: ??? +==26543== by 0xF14496F: ??? +==26543== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26543== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26543== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26543== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26543== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26543== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26543== by 0xF292D38: PetscInitialize (pinit.c:924) +==26543== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26543== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26543== by 0x147F87: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26543== by 0x14099D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26543== by 0x14393E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26543== by 0x1437DE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26543== by 0x143E75: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26543== by 0x13EDC5: main (TestImmersedBoundarySimulationModifier.cpp:19) +==26543== +==26543== Open file descriptor 158: +==26543== +==26543== +==26543== Open file descriptor 155: +==26543== +==26543== +==26543== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySimulationModifier_valgrind.txt +==26543== +==26543== +==26543== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26543== +==26543== +==26543== +==26543== HEAP SUMMARY: +==26543== in use at exit: 618,297 bytes in 8,235 blocks +==26543== total heap usage: 3,405,977 allocs, 3,397,742 frees, 1,588,212,685 bytes allocated +==26543== +==26543== LEAK SUMMARY: +==26543== definitely lost: 0 bytes in 0 blocks +==26543== indirectly lost: 0 bytes in 0 blocks +==26543== possibly lost: 0 bytes in 0 blocks +==26543== still reachable: 56 bytes in 3 blocks +==26543== suppressed: 618,241 bytes in 8,232 blocks +==26543== Reachable blocks (those to which a pointer was found) are not shown. +==26543== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26543== +==26543== For lists of detected and suppressed errors, rerun with: -s +==26543== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestImmersedBoundarySvgWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImmersedBoundarySvgWriter_valgrind.txt new file mode 100644 index 000000000..c3b39fed8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImmersedBoundarySvgWriter_valgrind.txt @@ -0,0 +1,73 @@ +==26559== Memcheck, a memory error detector +==26559== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26559== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26559== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestImmersedBoundarySvgWriter -malloc_debug -malloc_dump -memory_info +==26559== Parent PID: 24057 +==26559== +==26559== +==26559== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26559== Open file descriptor 12: +==26559== at 0x10CFA07D: pipe (pipe.c:29) +==26559== by 0x196B407D: ??? +==26559== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26559== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26559== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26559== by 0xF292D38: PetscInitialize (pinit.c:924) +==26559== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26559== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26559== by 0x135D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26559== by 0x12EEA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26559== by 0x1319E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26559== by 0x1318E3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26559== by 0x131EF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26559== by 0x12D6A5: main (TestImmersedBoundarySvgWriter.cpp:18) +==26559== +==26559== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26559== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26559== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26559== by 0xF144822: ??? +==26559== by 0xF14496F: ??? +==26559== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26559== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26559== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26559== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26559== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26559== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26559== by 0xF292D38: PetscInitialize (pinit.c:924) +==26559== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26559== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26559== by 0x135D89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26559== by 0x12EEA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26559== by 0x1319E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26559== by 0x1318E3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26559== by 0x131EF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26559== by 0x12D6A5: main (TestImmersedBoundarySvgWriter.cpp:18) +==26559== +==26559== Open file descriptor 158: +==26559== +==26559== +==26559== Open file descriptor 155: +==26559== +==26559== +==26559== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImmersedBoundarySvgWriter_valgrind.txt +==26559== +==26559== +==26559== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26559== +==26559== +==26559== +==26559== HEAP SUMMARY: +==26559== in use at exit: 620,890 bytes in 8,239 blocks +==26559== total heap usage: 53,579 allocs, 45,340 frees, 1,339,071,452 bytes allocated +==26559== +==26559== LEAK SUMMARY: +==26559== definitely lost: 0 bytes in 0 blocks +==26559== indirectly lost: 0 bytes in 0 blocks +==26559== possibly lost: 0 bytes in 0 blocks +==26559== still reachable: 2,576 bytes in 3 blocks +==26559== suppressed: 618,314 bytes in 8,236 blocks +==26559== Reachable blocks (those to which a pointer was found) are not shown. +==26559== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26559== +==26559== For lists of detected and suppressed errors, rerun with: -s +==26559== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestImpedancePostProcessor_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImpedancePostProcessor_valgrind.txt new file mode 100644 index 000000000..260cfc96c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImpedancePostProcessor_valgrind.txt @@ -0,0 +1,36 @@ +==41320== Memcheck, a memory error detector +==41320== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41320== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41320== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestImpedancePostProcessor -malloc_debug -malloc_dump -memory_info +==41320== Parent PID: 24057 +==41320== +==41320== +==41320== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41320== Open file descriptor 158: +==41320== +==41320== +==41320== Open file descriptor 155: +==41320== +==41320== +==41320== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImpedancePostProcessor_valgrind.txt +==41320== +==41320== +==41320== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41320== +==41320== +==41320== +==41320== HEAP SUMMARY: +==41320== in use at exit: 24 bytes in 2 blocks +==41320== total heap usage: 5,749 allocs, 5,747 frees, 616,805 bytes allocated +==41320== +==41320== LEAK SUMMARY: +==41320== definitely lost: 0 bytes in 0 blocks +==41320== indirectly lost: 0 bytes in 0 blocks +==41320== possibly lost: 0 bytes in 0 blocks +==41320== still reachable: 24 bytes in 2 blocks +==41320== suppressed: 0 bytes in 0 blocks +==41320== Reachable blocks (those to which a pointer was found) are not shown. +==41320== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41320== +==41320== For lists of detected and suppressed errors, rerun with: -s +==41320== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestImplicitCardiacMechanicsSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestImplicitCardiacMechanicsSolver_valgrind.txt new file mode 100644 index 000000000..b44385041 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestImplicitCardiacMechanicsSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43646== Memcheck, a memory error detector +==43646== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43646== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43646== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestImplicitCardiacMechanicsSolver -malloc_debug -malloc_dump -memory_info +==43646== Parent PID: 24057 +==43646== +==43646== +==43646== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43646== Open file descriptor 12: +==43646== at 0xBF2A07D: pipe (pipe.c:29) +==43646== by 0x1433107D: ??? +==43646== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43646== by 0xC127418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43646== by 0xC0C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43646== by 0xA4D5D38: PetscInitialize (pinit.c:924) +==43646== by 0xA3AC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43646== by 0xA3AC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43646== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43646== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43646== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43646== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43646== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43646== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43646== +==43646== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43646== at 0xBF2EA1C: __open_nocancel (open64_nocancel.c:39) +==43646== by 0xBEB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43646== by 0xB76A822: ??? +==43646== by 0xB76A96F: ??? +==43646== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43646== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43646== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43646== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43646== by 0xC127418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43646== by 0xC0C0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43646== by 0xA4D5D38: PetscInitialize (pinit.c:924) +==43646== by 0xA3AC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43646== by 0xA3AC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43646== by 0x12D058: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43646== by 0x127F95: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43646== by 0x12ABEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43646== by 0x12AA8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43646== by 0x12B123: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43646== by 0x126275: main (TestImplicitCardiacMechanicsSolver.cpp:19) +==43646== +==43646== Open file descriptor 158: +==43646== +==43646== +==43646== Open file descriptor 155: +==43646== +==43646== +==43646== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestImplicitCardiacMechanicsSolver_valgrind.txt +==43646== +==43646== +==43646== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43646== +==43646== +==43646== +==43646== HEAP SUMMARY: +==43646== in use at exit: 618,281 bytes in 8,234 blocks +==43646== total heap usage: 1,566,163 allocs, 1,557,929 frees, 1,485,079,083 bytes allocated +==43646== +==43646== LEAK SUMMARY: +==43646== definitely lost: 0 bytes in 0 blocks +==43646== indirectly lost: 0 bytes in 0 blocks +==43646== possibly lost: 0 bytes in 0 blocks +==43646== still reachable: 24 bytes in 2 blocks +==43646== suppressed: 618,257 bytes in 8,232 blocks +==43646== Reachable blocks (those to which a pointer was found) are not shown. +==43646== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43646== +==43646== For lists of detected and suppressed errors, rerun with: -s +==43646== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestIncompressibleNonlinearElasticitySolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestIncompressibleNonlinearElasticitySolver_valgrind.txt new file mode 100644 index 000000000..a42f9009e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestIncompressibleNonlinearElasticitySolver_valgrind.txt @@ -0,0 +1,73 @@ +==25364== Memcheck, a memory error detector +==25364== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25364== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25364== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestIncompressibleNonlinearElasticitySolver -malloc_debug -malloc_dump -memory_info +==25364== Parent PID: 24057 +==25364== +==25364== +==25364== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25364== Open file descriptor 12: +==25364== at 0x840907D: pipe (pipe.c:29) +==25364== by 0x106DF07D: ??? +==25364== by 0xBF344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25364== by 0x7C2A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25364== by 0x7BC3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25364== by 0x6897D38: PetscInitialize (pinit.c:924) +==25364== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25364== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25364== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25364== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25364== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25364== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25364== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25364== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25364== +==25364== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25364== at 0x840DA1C: __open_nocancel (open64_nocancel.c:39) +==25364== by 0x8391BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25364== by 0x7B2C822: ??? +==25364== by 0x7B2C96F: ??? +==25364== by 0xBFD96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25364== by 0xBFD9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25364== by 0xBF8F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25364== by 0xBF342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25364== by 0x7C2A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25364== by 0x7BC3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25364== by 0x6897D38: PetscInitialize (pinit.c:924) +==25364== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25364== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25364== by 0x1506C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25364== by 0x1497DB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25364== by 0x14CC52: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25364== by 0x14CAF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25364== by 0x14D189: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25364== by 0x147395: main (TestIncompressibleNonlinearElasticitySolver.cpp:19) +==25364== +==25364== Open file descriptor 158: +==25364== +==25364== +==25364== Open file descriptor 155: +==25364== +==25364== +==25364== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIncompressibleNonlinearElasticitySolver_valgrind.txt +==25364== +==25364== +==25364== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25364== +==25364== +==25364== +==25364== HEAP SUMMARY: +==25364== in use at exit: 618,217 bytes in 8,234 blocks +==25364== total heap usage: 641,871 allocs, 633,637 frees, 1,498,301,787 bytes allocated +==25364== +==25364== LEAK SUMMARY: +==25364== definitely lost: 0 bytes in 0 blocks +==25364== indirectly lost: 0 bytes in 0 blocks +==25364== possibly lost: 0 bytes in 0 blocks +==25364== still reachable: 24 bytes in 2 blocks +==25364== suppressed: 618,193 bytes in 8,232 blocks +==25364== Reachable blocks (those to which a pointer was found) are not shown. +==25364== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25364== +==25364== For lists of detected and suppressed errors, rerun with: -s +==25364== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestIonicModelsWithSacs_valgrind.txt b/log-files/2025-02-12_21-17-58/TestIonicModelsWithSacs_valgrind.txt new file mode 100644 index 000000000..c822df5ea --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestIonicModelsWithSacs_valgrind.txt @@ -0,0 +1,73 @@ +==42892== Memcheck, a memory error detector +==42892== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42892== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42892== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModelsWithSacs -malloc_debug -malloc_dump -memory_info +==42892== Parent PID: 24057 +==42892== +==42892== +==42892== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42892== Open file descriptor 12: +==42892== at 0x9C6807D: pipe (pipe.c:29) +==42892== by 0x1432F07D: ??? +==42892== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42892== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42892== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42892== by 0x8508D38: PetscInitialize (pinit.c:924) +==42892== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42892== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42892== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42892== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42892== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42892== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42892== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42892== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42892== +==42892== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42892== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==42892== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42892== by 0x979D822: ??? +==42892== by 0x979D96F: ??? +==42892== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42892== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42892== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42892== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42892== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42892== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42892== by 0x8508D38: PetscInitialize (pinit.c:924) +==42892== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42892== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42892== by 0x11A0FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42892== by 0x1145B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42892== by 0x116CB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42892== by 0x116BAD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42892== by 0x1171C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42892== by 0x112DB5: main (TestIonicModelsWithSacs.cpp:18) +==42892== +==42892== Open file descriptor 158: +==42892== +==42892== +==42892== Open file descriptor 155: +==42892== +==42892== +==42892== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModelsWithSacs_valgrind.txt +==42892== +==42892== +==42892== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42892== +==42892== +==42892== +==42892== HEAP SUMMARY: +==42892== in use at exit: 618,354 bytes in 8,238 blocks +==42892== total heap usage: 481,199 allocs, 472,961 frees, 1,442,367,225 bytes allocated +==42892== +==42892== LEAK SUMMARY: +==42892== definitely lost: 0 bytes in 0 blocks +==42892== indirectly lost: 0 bytes in 0 blocks +==42892== possibly lost: 0 bytes in 0 blocks +==42892== still reachable: 24 bytes in 2 blocks +==42892== suppressed: 618,330 bytes in 8,236 blocks +==42892== Reachable blocks (those to which a pointer was found) are not shown. +==42892== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42892== +==42892== For lists of detected and suppressed errors, rerun with: -s +==42892== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestIonicModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestIonicModels_valgrind.txt new file mode 100644 index 000000000..15389b0fe --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestIonicModels_valgrind.txt @@ -0,0 +1,73 @@ +==42318== Memcheck, a memory error detector +==42318== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42318== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42318== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestIonicModels -malloc_debug -malloc_dump -memory_info +==42318== Parent PID: 24057 +==42318== +==42318== +==42318== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42318== Open file descriptor 12: +==42318== at 0x9D1D07D: pipe (pipe.c:29) +==42318== by 0x1432F07D: ??? +==42318== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42318== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42318== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42318== by 0x85E0D38: PetscInitialize (pinit.c:924) +==42318== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42318== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42318== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42318== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42318== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42318== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42318== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42318== by 0x12BDA5: main (TestIonicModels.cpp:19) +==42318== +==42318== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42318== at 0x9D21A1C: __open_nocancel (open64_nocancel.c:39) +==42318== by 0x9CA5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42318== by 0x8492822: ??? +==42318== by 0x849296F: ??? +==42318== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42318== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42318== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42318== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42318== by 0x9950418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42318== by 0x98E9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42318== by 0x85E0D38: PetscInitialize (pinit.c:924) +==42318== by 0x84521D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42318== by 0x8452227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42318== by 0x1365FF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==42318== by 0x130B0B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42318== by 0x133AAE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42318== by 0x13394E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42318== by 0x133FE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42318== by 0x12BDA5: main (TestIonicModels.cpp:19) +==42318== +==42318== Open file descriptor 158: +==42318== +==42318== +==42318== Open file descriptor 155: +==42318== +==42318== +==42318== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestIonicModels_valgrind.txt +==42318== +==42318== +==42318== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42318== +==42318== +==42318== +==42318== HEAP SUMMARY: +==42318== in use at exit: 620,061 bytes in 8,238 blocks +==42318== total heap usage: 1,892,204 allocs, 1,883,966 frees, 3,069,794,430 bytes allocated +==42318== +==42318== LEAK SUMMARY: +==42318== definitely lost: 0 bytes in 0 blocks +==42318== indirectly lost: 0 bytes in 0 blocks +==42318== possibly lost: 0 bytes in 0 blocks +==42318== still reachable: 1,804 bytes in 6 blocks +==42318== suppressed: 618,257 bytes in 8,232 blocks +==42318== Reachable blocks (those to which a pointer was found) are not shown. +==42318== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42318== +==42318== For lists of detected and suppressed errors, rerun with: -s +==42318== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestLinearBasisFunction_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLinearBasisFunction_valgrind.txt new file mode 100644 index 000000000..7852a97f1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLinearBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25302== Memcheck, a memory error detector +==25302== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25302== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25302== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearBasisFunction -malloc_debug -malloc_dump -memory_info +==25302== Parent PID: 24057 +==25302== +==25302== +==25302== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25302== Open file descriptor 12: +==25302== at 0x6CB407D: pipe (pipe.c:29) +==25302== by 0x104DE07D: ??? +==25302== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25302== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0x7003D38: PetscInitialize (pinit.c:924) +==25302== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25302== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25302== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25302== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25302== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25302== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25302== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25302== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25302== +==25302== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25302== at 0x6CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25302== by 0x6C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25302== by 0x693C822: ??? +==25302== by 0x693C96F: ??? +==25302== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25302== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25302== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25302== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25302== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25302== by 0x7003D38: PetscInitialize (pinit.c:924) +==25302== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25302== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25302== by 0x1218A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25302== by 0x11D073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25302== by 0x11F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25302== by 0x11F565: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25302== by 0x11FB79: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25302== by 0x11B875: main (TestLinearBasisFunction.cpp:18) +==25302== +==25302== Open file descriptor 158: +==25302== +==25302== +==25302== Open file descriptor 155: +==25302== +==25302== +==25302== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearBasisFunction_valgrind.txt +==25302== +==25302== +==25302== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25302== +==25302== +==25302== +==25302== HEAP SUMMARY: +==25302== in use at exit: 618,274 bytes in 8,238 blocks +==25302== total heap usage: 47,355 allocs, 39,117 frees, 1,338,387,525 bytes allocated +==25302== +==25302== LEAK SUMMARY: +==25302== definitely lost: 0 bytes in 0 blocks +==25302== indirectly lost: 0 bytes in 0 blocks +==25302== possibly lost: 0 bytes in 0 blocks +==25302== still reachable: 24 bytes in 2 blocks +==25302== suppressed: 618,250 bytes in 8,236 blocks +==25302== Reachable blocks (those to which a pointer was found) are not shown. +==25302== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25302== +==25302== For lists of detected and suppressed errors, rerun with: -s +==25302== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt new file mode 100644 index 000000000..76fef8f84 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==25112== Memcheck, a memory error detector +==25112== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25112== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25112== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemForCoupledOdeSystem -malloc_debug -malloc_dump -memory_info +==25112== Parent PID: 24057 +==25112== +==25112== +==25112== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25112== Open file descriptor 12: +==25112== at 0x7DCC07D: pipe (pipe.c:29) +==25112== by 0x100CC07D: ??? +==25112== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25112== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25112== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25112== by 0x6688D38: PetscInitialize (pinit.c:924) +==25112== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25112== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25112== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25112== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25112== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25112== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25112== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25112== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25112== +==25112== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25112== at 0x7DD0A1C: __open_nocancel (open64_nocancel.c:39) +==25112== by 0x7D54BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25112== by 0x791D822: ??? +==25112== by 0x791D96F: ??? +==25112== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25112== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25112== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25112== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25112== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25112== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25112== by 0x6688D38: PetscInitialize (pinit.c:924) +==25112== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25112== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25112== by 0x1173E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25112== by 0x112E53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25112== by 0x11519C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25112== by 0x115097: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25112== by 0x1156AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25112== by 0x111655: main (TestLinearParabolicPdeSystemForCoupledOdeSystem.cpp:18) +==25112== +==25112== Open file descriptor 158: +==25112== +==25112== +==25112== Open file descriptor 155: +==25112== +==25112== +==25112== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemForCoupledOdeSystem_valgrind.txt +==25112== +==25112== +==25112== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25112== +==25112== +==25112== +==25112== HEAP SUMMARY: +==25112== in use at exit: 618,242 bytes in 8,238 blocks +==25112== total heap usage: 47,308 allocs, 39,070 frees, 1,338,382,424 bytes allocated +==25112== +==25112== LEAK SUMMARY: +==25112== definitely lost: 0 bytes in 0 blocks +==25112== indirectly lost: 0 bytes in 0 blocks +==25112== possibly lost: 0 bytes in 0 blocks +==25112== still reachable: 24 bytes in 2 blocks +==25112== suppressed: 618,218 bytes in 8,236 blocks +==25112== Reachable blocks (those to which a pointer was found) are not shown. +==25112== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25112== +==25112== For lists of detected and suppressed errors, rerun with: -s +==25112== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt new file mode 100644 index 000000000..7ad955851 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25133== Memcheck, a memory error detector +==25133== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25133== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25133== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver -malloc_debug -malloc_dump -memory_info +==25133== Parent PID: 24057 +==25133== +==25133== +==25133== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25133== Open file descriptor 12: +==25133== at 0x87BE07D: pipe (pipe.c:29) +==25133== by 0x1080D07D: ??? +==25133== by 0xC6214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25133== by 0x8DB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25133== by 0x8D4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25133== by 0x6D69D38: PetscInitialize (pinit.c:924) +==25133== by 0x6C401D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25133== by 0x6C40227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25133== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25133== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25133== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25133== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25133== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25133== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25133== +==25133== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25133== at 0x87C2A1C: __open_nocancel (open64_nocancel.c:39) +==25133== by 0x8746BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25133== by 0x7FFE822: ??? +==25133== by 0x7FFE96F: ??? +==25133== by 0xC6C66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25133== by 0xC6C6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25133== by 0xC67C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25133== by 0xC6212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25133== by 0x8DB2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25133== by 0x8D4BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25133== by 0x6D69D38: PetscInitialize (pinit.c:924) +==25133== by 0x6C401D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25133== by 0x6C40227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25133== by 0x199CB4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25133== by 0x191511: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25133== by 0x1949B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25133== by 0x194858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25133== by 0x194EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25133== by 0x18F635: main (TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver.cpp:19) +==25133== +==25133== Open file descriptor 158: +==25133== +==25133== +==25133== Open file descriptor 155: +==25133== +==25133== +==25133== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver_valgrind.txt +==25133== +==25133== +==25133== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25133== +==25133== +==25133== +==25133== HEAP SUMMARY: +==25133== in use at exit: 620,801 bytes in 8,235 blocks +==25133== total heap usage: 2,554,386 allocs, 2,546,151 frees, 1,577,429,413 bytes allocated +==25133== +==25133== LEAK SUMMARY: +==25133== definitely lost: 0 bytes in 0 blocks +==25133== indirectly lost: 0 bytes in 0 blocks +==25133== possibly lost: 0 bytes in 0 blocks +==25133== still reachable: 2,576 bytes in 3 blocks +==25133== suppressed: 618,225 bytes in 8,232 blocks +==25133== Reachable blocks (those to which a pointer was found) are not shown. +==25133== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25133== +==25133== For lists of detected and suppressed errors, rerun with: -s +==25133== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt new file mode 100644 index 000000000..4bfc9ff60 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt @@ -0,0 +1,73 @@ +==40548== Memcheck, a memory error detector +==40548== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40548== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40548== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestLinearSpringWithVariableSpringConstantsForce -malloc_debug -malloc_dump -memory_info +==40548== Parent PID: 24057 +==40548== +==40548== +==40548== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40548== Open file descriptor 12: +==40548== at 0x111EC07D: pipe (pipe.c:29) +==40548== by 0x1B37507D: ??? +==40548== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40548== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40548== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40548== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40548== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40548== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40548== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40548== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40548== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40548== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40548== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40548== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40548== +==40548== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40548== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) +==40548== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40548== by 0x10A04822: ??? +==40548== by 0x10A0496F: ??? +==40548== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40548== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40548== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40548== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40548== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40548== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40548== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40548== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40548== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40548== by 0x165A7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40548== by 0x15DE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40548== by 0x160FB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40548== by 0x160E58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40548== by 0x1614EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40548== by 0x15C295: main (TestLinearSpringWithVariableSpringConstantsForce.cpp:19) +==40548== +==40548== Open file descriptor 158: +==40548== +==40548== +==40548== Open file descriptor 155: +==40548== +==40548== +==40548== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSpringWithVariableSpringConstantsForce_valgrind.txt +==40548== +==40548== +==40548== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40548== +==40548== +==40548== +==40548== HEAP SUMMARY: +==40548== in use at exit: 618,386 bytes in 8,239 blocks +==40548== total heap usage: 558,475 allocs, 550,236 frees, 1,383,922,911 bytes allocated +==40548== +==40548== LEAK SUMMARY: +==40548== definitely lost: 0 bytes in 0 blocks +==40548== indirectly lost: 0 bytes in 0 blocks +==40548== possibly lost: 0 bytes in 0 blocks +==40548== still reachable: 56 bytes in 3 blocks +==40548== suppressed: 618,330 bytes in 8,236 blocks +==40548== Reachable blocks (those to which a pointer was found) are not shown. +==40548== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40548== +==40548== For lists of detected and suppressed errors, rerun with: -s +==40548== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestLinearSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLinearSystem_valgrind.txt new file mode 100644 index 000000000..e40376b8f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLinearSystem_valgrind.txt @@ -0,0 +1,73 @@ +==24363== Memcheck, a memory error detector +==24363== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24363== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24363== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestLinearSystem -malloc_debug -malloc_dump -memory_info +==24363== Parent PID: 24057 +==24363== +==24363== +==24363== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24363== Open file descriptor 12: +==24363== at 0x610307D: pipe (pipe.c:29) +==24363== by 0xAF3907D: ??? +==24363== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24363== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24363== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24363== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24363== by 0x135330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24363== by 0x12FA89: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24363== by 0x132BB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24363== by 0x132A50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24363== by 0x1330E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24363== by 0x12DEA5: main (TestLinearSystem.cpp:19) +==24363== +==24363== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24363== at 0x6107A1C: __open_nocancel (open64_nocancel.c:39) +==24363== by 0x608BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24363== by 0x49C9822: ??? +==24363== by 0x49C996F: ??? +==24363== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24363== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24363== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24363== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24363== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24363== by 0x4B19D38: PetscInitialize (pinit.c:924) +==24363== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24363== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24363== by 0x135330: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24363== by 0x12FA89: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24363== by 0x132BB0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24363== by 0x132A50: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24363== by 0x1330E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24363== by 0x12DEA5: main (TestLinearSystem.cpp:19) +==24363== +==24363== Open file descriptor 158: +==24363== +==24363== +==24363== Open file descriptor 155: +==24363== +==24363== +==24363== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLinearSystem_valgrind.txt +==24363== +==24363== +==24363== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24363== +==24363== +==24363== +==24363== HEAP SUMMARY: +==24363== in use at exit: 617,906 bytes in 8,239 blocks +==24363== total heap usage: 59,954 allocs, 51,715 frees, 1,374,857,577 bytes allocated +==24363== +==24363== LEAK SUMMARY: +==24363== definitely lost: 0 bytes in 0 blocks +==24363== indirectly lost: 0 bytes in 0 blocks +==24363== possibly lost: 0 bytes in 0 blocks +==24363== still reachable: 40 bytes in 3 blocks +==24363== suppressed: 617,866 bytes in 8,236 blocks +==24363== Reachable blocks (those to which a pointer was found) are not shown. +==24363== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24363== +==24363== For lists of detected and suppressed errors, rerun with: -s +==24363== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestLobePropertiesCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLobePropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..a2794b292 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLobePropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41355== Memcheck, a memory error detector +==41355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestLobePropertiesCalculator -malloc_debug -malloc_dump -memory_info +==41355== Parent PID: 24057 +==41355== +==41355== +==41355== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41355== Open file descriptor 158: +==41355== +==41355== +==41355== Open file descriptor 155: +==41355== +==41355== +==41355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLobePropertiesCalculator_valgrind.txt +==41355== +==41355== +==41355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41355== +==41355== +==41355== +==41355== HEAP SUMMARY: +==41355== in use at exit: 24 bytes in 2 blocks +==41355== total heap usage: 134,423 allocs, 134,421 frees, 48,976,316 bytes allocated +==41355== +==41355== LEAK SUMMARY: +==41355== definitely lost: 0 bytes in 0 blocks +==41355== indirectly lost: 0 bytes in 0 blocks +==41355== possibly lost: 0 bytes in 0 blocks +==41355== still reachable: 24 bytes in 2 blocks +==41355== suppressed: 0 bytes in 0 blocks +==41355== Reachable blocks (those to which a pointer was found) are not shown. +==41355== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41355== +==41355== For lists of detected and suppressed errors, rerun with: -s +==41355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestLogFile_valgrind.txt b/log-files/2025-02-12_21-17-58/TestLogFile_valgrind.txt new file mode 100644 index 000000000..6d865bfa0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestLogFile_valgrind.txt @@ -0,0 +1,73 @@ +==24184== Memcheck, a memory error detector +==24184== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24184== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24184== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestLogFile -malloc_debug -malloc_dump -memory_info +==24184== Parent PID: 24057 +==24184== +==24184== +==24184== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24184== Open file descriptor 12: +==24184== at 0x616907D: pipe (pipe.c:29) +==24184== by 0xAEA507D: ??? +==24184== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24184== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24184== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24184== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24184== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24184== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24184== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24184== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24184== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24184== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24184== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24184== by 0x111DB5: main (TestLogFile.cpp:19) +==24184== +==24184== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24184== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24184== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24184== by 0x5CB8822: ??? +==24184== by 0x5CB896F: ??? +==24184== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24184== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24184== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24184== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24184== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24184== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24184== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24184== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24184== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24184== by 0x11A18F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24184== by 0x11398D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24184== by 0x116442: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24184== by 0x1162E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24184== by 0x116979: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24184== by 0x111DB5: main (TestLogFile.cpp:19) +==24184== +==24184== Open file descriptor 158: +==24184== +==24184== +==24184== Open file descriptor 155: +==24184== +==24184== +==24184== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestLogFile_valgrind.txt +==24184== +==24184== +==24184== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24184== +==24184== +==24184== +==24184== HEAP SUMMARY: +==24184== in use at exit: 617,874 bytes in 8,238 blocks +==24184== total heap usage: 45,248 allocs, 37,010 frees, 1,338,411,997 bytes allocated +==24184== +==24184== LEAK SUMMARY: +==24184== definitely lost: 0 bytes in 0 blocks +==24184== indirectly lost: 0 bytes in 0 blocks +==24184== possibly lost: 0 bytes in 0 blocks +==24184== still reachable: 24 bytes in 2 blocks +==24184== suppressed: 617,850 bytes in 8,236 blocks +==24184== Reachable blocks (those to which a pointer was found) are not shown. +==24184== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24184== +==24184== For lists of detected and suppressed errors, rerun with: -s +==24184== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMajorAirwaysCentreLinesCleaner_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMajorAirwaysCentreLinesCleaner_valgrind.txt new file mode 100644 index 000000000..76d986e63 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMajorAirwaysCentreLinesCleaner_valgrind.txt @@ -0,0 +1,73 @@ +==41378== Memcheck, a memory error detector +==41378== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41378== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41378== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMajorAirwaysCentreLinesCleaner -malloc_debug -malloc_dump -memory_info +==41378== Parent PID: 24057 +==41378== +==41378== +==41378== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41378== Open file descriptor 12: +==41378== at 0x823107D: pipe (pipe.c:29) +==41378== by 0x107AC07D: ??? +==41378== by 0xBFD34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41378== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41378== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41378== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41378== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41378== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41378== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41378== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41378== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41378== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41378== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41378== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41378== +==41378== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41378== at 0x8235A1C: __open_nocancel (open64_nocancel.c:39) +==41378== by 0x81B9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41378== by 0x7A3B822: ??? +==41378== by 0x7A3B96F: ??? +==41378== by 0xC0786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41378== by 0xC078938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41378== by 0xC02E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41378== by 0xBFD32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41378== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41378== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41378== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41378== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41378== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41378== by 0x11675D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41378== by 0x1121F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41378== by 0x1146F0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41378== by 0x1145EB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41378== by 0x114BFF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41378== by 0x1109F5: main (TestMajorAirwaysCentreLinesCleaner.cpp:18) +==41378== +==41378== Open file descriptor 158: +==41378== +==41378== +==41378== Open file descriptor 155: +==41378== +==41378== +==41378== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMajorAirwaysCentreLinesCleaner_valgrind.txt +==41378== +==41378== +==41378== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41378== +==41378== +==41378== +==41378== HEAP SUMMARY: +==41378== in use at exit: 618,338 bytes in 8,238 blocks +==41378== total heap usage: 493,347 allocs, 485,109 frees, 1,357,250,041 bytes allocated +==41378== +==41378== LEAK SUMMARY: +==41378== definitely lost: 0 bytes in 0 blocks +==41378== indirectly lost: 0 bytes in 0 blocks +==41378== possibly lost: 0 bytes in 0 blocks +==41378== still reachable: 24 bytes in 2 blocks +==41378== suppressed: 618,314 bytes in 8,236 blocks +==41378== Reachable blocks (those to which a pointer was found) are not shown. +==41378== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41378== +==41378== For lists of detected and suppressed errors, rerun with: -s +==41378== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMaterialLaws_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMaterialLaws_valgrind.txt new file mode 100644 index 000000000..f92a0be79 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMaterialLaws_valgrind.txt @@ -0,0 +1,73 @@ +==25366== Memcheck, a memory error detector +==25366== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25366== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25366== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info +==25366== Parent PID: 24057 +==25366== +==25366== +==25366== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25366== Open file descriptor 12: +==25366== at 0x4F1B07D: pipe (pipe.c:29) +==25366== by 0x106E107D: ??? +==25366== by 0xBFE74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25366== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x71B5D38: PetscInitialize (pinit.c:924) +==25366== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25366== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25366== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25366== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25366== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25366== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25366== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25366== by 0x124255: main (TestMaterialLaws.cpp:19) +==25366== +==25366== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25366== at 0x4F1FA1C: __open_nocancel (open64_nocancel.c:39) +==25366== by 0x4EA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25366== by 0x4ABA822: ??? +==25366== by 0x4ABA96F: ??? +==25366== by 0xC08C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25366== by 0xC08C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25366== by 0xC042922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25366== by 0xBFE72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25366== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25366== by 0x71B5D38: PetscInitialize (pinit.c:924) +==25366== by 0x4A7A1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25366== by 0x4A7A227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25366== by 0x12ADEE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25366== by 0x125E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25366== by 0x128AB2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25366== by 0x128952: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25366== by 0x128FE9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25366== by 0x124255: main (TestMaterialLaws.cpp:19) +==25366== +==25366== Open file descriptor 158: +==25366== +==25366== +==25366== Open file descriptor 155: +==25366== +==25366== +==25366== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMaterialLaws_valgrind.txt +==25366== +==25366== +==25366== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25366== +==25366== +==25366== +==25366== HEAP SUMMARY: +==25366== in use at exit: 618,290 bytes in 8,238 blocks +==25366== total heap usage: 47,751 allocs, 39,513 frees, 1,338,429,759 bytes allocated +==25366== +==25366== LEAK SUMMARY: +==25366== definitely lost: 0 bytes in 0 blocks +==25366== indirectly lost: 0 bytes in 0 blocks +==25366== possibly lost: 0 bytes in 0 blocks +==25366== still reachable: 24 bytes in 2 blocks +==25366== suppressed: 618,266 bytes in 8,236 blocks +==25366== Reachable blocks (those to which a pointer was found) are not shown. +==25366== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25366== +==25366== For lists of detected and suppressed errors, rerun with: -s +==25366== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMathsCustomFunctions_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMathsCustomFunctions_valgrind.txt new file mode 100644 index 000000000..ec136aead --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMathsCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24209== Memcheck, a memory error detector +==24209== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24209== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24209== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestMathsCustomFunctions -malloc_debug -malloc_dump -memory_info +==24209== Parent PID: 24057 +==24209== +==24209== +==24209== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24209== Open file descriptor 12: +==24209== at 0x4D9B07D: pipe (pipe.c:29) +==24209== by 0xAEA507D: ??? +==24209== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24209== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24209== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24209== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24209== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24209== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24209== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24209== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24209== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24209== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24209== +==24209== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24209== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24209== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24209== by 0x493A822: ??? +==24209== by 0x493A96F: ??? +==24209== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24209== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24209== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24209== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24209== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24209== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24209== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24209== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24209== by 0x112348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24209== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24209== by 0x110412: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24209== by 0x11030D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24209== by 0x110921: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24209== by 0x10C555: main (TestMathsCustomFunctions.cpp:18) +==24209== +==24209== Open file descriptor 158: +==24209== +==24209== +==24209== Open file descriptor 155: +==24209== +==24209== +==24209== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMathsCustomFunctions_valgrind.txt +==24209== +==24209== +==24209== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24209== +==24209== +==24209== +==24209== HEAP SUMMARY: +==24209== in use at exit: 617,874 bytes in 8,238 blocks +==24209== total heap usage: 44,913 allocs, 36,675 frees, 1,338,161,407 bytes allocated +==24209== +==24209== LEAK SUMMARY: +==24209== definitely lost: 0 bytes in 0 blocks +==24209== indirectly lost: 0 bytes in 0 blocks +==24209== possibly lost: 0 bytes in 0 blocks +==24209== still reachable: 24 bytes in 2 blocks +==24209== suppressed: 617,850 bytes in 8,236 blocks +==24209== Reachable blocks (those to which a pointer was found) are not shown. +==24209== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24209== +==24209== For lists of detected and suppressed errors, rerun with: -s +==24209== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMatrixVentilationProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMatrixVentilationProblem_valgrind.txt new file mode 100644 index 000000000..481661f93 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMatrixVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41419== Memcheck, a memory error detector +==41419== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41419== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41419== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMatrixVentilationProblem -malloc_debug -malloc_dump -memory_info +==41419== Parent PID: 24057 +==41419== +==41419== +==41419== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41419== Open file descriptor 12: +==41419== at 0x81E107D: pipe (pipe.c:29) +==41419== by 0x107AC07D: ??? +==41419== by 0xC0204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41419== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41419== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41419== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41419== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41419== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41419== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41419== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41419== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41419== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41419== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41419== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41419== +==41419== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41419== at 0x81E5A1C: __open_nocancel (open64_nocancel.c:39) +==41419== by 0x8169BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41419== by 0x7A3B822: ??? +==41419== by 0x7A3B96F: ??? +==41419== by 0xC0C56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41419== by 0xC0C5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41419== by 0xC07B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41419== by 0xC0202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41419== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41419== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41419== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41419== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41419== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41419== by 0x117742: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41419== by 0x1128B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41419== by 0x1155E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41419== by 0x115486: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41419== by 0x115B1D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41419== by 0x110B35: main (TestMatrixVentilationProblem.cpp:19) +==41419== +==41419== Open file descriptor 158: +==41419== +==41419== +==41419== Open file descriptor 155: +==41419== +==41419== +==41419== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMatrixVentilationProblem_valgrind.txt +==41419== +==41419== +==41419== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41419== +==41419== +==41419== +==41419== HEAP SUMMARY: +==41419== in use at exit: 618,338 bytes in 8,238 blocks +==41419== total heap usage: 137,448 allocs, 129,210 frees, 1,515,201,324 bytes allocated +==41419== +==41419== LEAK SUMMARY: +==41419== definitely lost: 0 bytes in 0 blocks +==41419== indirectly lost: 0 bytes in 0 blocks +==41419== possibly lost: 0 bytes in 0 blocks +==41419== still reachable: 24 bytes in 2 blocks +==41419== suppressed: 618,314 bytes in 8,236 blocks +==41419== Reachable blocks (those to which a pointer was found) are not shown. +==41419== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41419== +==41419== For lists of detected and suppressed errors, rerun with: -s +==41419== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMemfemMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMemfemMeshReader_valgrind.txt new file mode 100644 index 000000000..7e0e5554b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMemfemMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24641== Memcheck, a memory error detector +==24641== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24641== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24641== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMemfemMeshReader -malloc_debug -malloc_dump -memory_info +==24641== Parent PID: 24057 +==24641== +==24641== +==24641== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24641== Open file descriptor 12: +==24641== at 0x6C5C07D: pipe (pipe.c:29) +==24641== by 0x100CC07D: ??? +==24641== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24641== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24641== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24641== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24641== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24641== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24641== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24641== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24641== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24641== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24641== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24641== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24641== +==24641== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24641== at 0x6C60A1C: __open_nocancel (open64_nocancel.c:39) +==24641== by 0x6BE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24641== by 0x659D822: ??? +==24641== by 0x659D96F: ??? +==24641== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24641== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24641== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24641== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24641== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24641== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24641== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24641== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24641== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24641== by 0x118FB6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24641== by 0x11470D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24641== by 0x116FF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24641== by 0x116E98: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24641== by 0x11752F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24641== by 0x112B35: main (TestMemfemMeshReader.cpp:19) +==24641== +==24641== Open file descriptor 158: +==24641== +==24641== +==24641== Open file descriptor 155: +==24641== +==24641== +==24641== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMemfemMeshReader_valgrind.txt +==24641== +==24641== +==24641== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24641== +==24641== +==24641== +==24641== HEAP SUMMARY: +==24641== in use at exit: 618,242 bytes in 8,238 blocks +==24641== total heap usage: 87,585 allocs, 79,347 frees, 1,340,445,303 bytes allocated +==24641== +==24641== LEAK SUMMARY: +==24641== definitely lost: 0 bytes in 0 blocks +==24641== indirectly lost: 0 bytes in 0 blocks +==24641== possibly lost: 0 bytes in 0 blocks +==24641== still reachable: 24 bytes in 2 blocks +==24641== suppressed: 618,218 bytes in 8,236 blocks +==24641== Reachable blocks (those to which a pointer was found) are not shown. +==24641== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24641== +==24641== For lists of detected and suppressed errors, rerun with: -s +==24641== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt new file mode 100644 index 000000000..c5f9a8190 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt @@ -0,0 +1,73 @@ +==26183== Memcheck, a memory error detector +==26183== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26183== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info +==26183== Parent PID: 24057 +==26183== +==26183== +==26183== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26183== Open file descriptor 12: +==26183== at 0x10D9F07D: pipe (pipe.c:29) +==26183== by 0x196B407D: ??? +==26183== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26183== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26183== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26183== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26183== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26183== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26183== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26183== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26183== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26183== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26183== +==26183== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26183== at 0x10DA3A1C: __open_nocancel (open64_nocancel.c:39) +==26183== by 0x10D27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26183== by 0x104C2822: ??? +==26183== by 0x104C296F: ??? +==26183== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26183== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26183== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26183== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26183== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26183== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26183== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26183== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26183== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26183== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26183== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26183== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26183== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26183== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) +==26183== +==26183== Open file descriptor 158: +==26183== +==26183== +==26183== Open file descriptor 155: +==26183== +==26183== +==26183== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt +==26183== +==26183== +==26183== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26183== +==26183== +==26183== +==26183== HEAP SUMMARY: +==26183== in use at exit: 618,370 bytes in 8,239 blocks +==26183== total heap usage: 224,633 allocs, 216,394 frees, 1,363,725,490 bytes allocated +==26183== +==26183== LEAK SUMMARY: +==26183== definitely lost: 0 bytes in 0 blocks +==26183== indirectly lost: 0 bytes in 0 blocks +==26183== possibly lost: 0 bytes in 0 blocks +==26183== still reachable: 56 bytes in 3 blocks +==26183== suppressed: 618,314 bytes in 8,236 blocks +==26183== Reachable blocks (those to which a pointer was found) are not shown. +==26183== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26183== +==26183== For lists of detected and suppressed errors, rerun with: -s +==26183== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMeshBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMeshBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..542be680f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMeshBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26181== Memcheck, a memory error detector +==26181== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26181== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26181== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26181== Parent PID: 24057 +==26181== +==26181== +==26181== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26181== Open file descriptor 12: +==26181== at 0xF92C07D: pipe (pipe.c:29) +==26181== by 0x196B407D: ??? +==26181== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26181== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x10218D38: PetscInitialize (pinit.c:924) +==26181== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26181== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26181== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26181== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26181== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26181== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26181== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26181== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26181== +==26181== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26181== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26181== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26181== by 0xF144822: ??? +==26181== by 0xF14496F: ??? +==26181== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26181== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26181== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26181== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26181== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26181== by 0x10218D38: PetscInitialize (pinit.c:924) +==26181== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26181== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26181== by 0x2EFB7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26181== by 0x2E6539: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26181== by 0x2EAE3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26181== by 0x2EACDE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26181== by 0x2EB375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26181== by 0x2E4955: main (TestMeshBasedCellPopulation.cpp:19) +==26181== +==26181== Open file descriptor 158: +==26181== +==26181== +==26181== Open file descriptor 155: +==26181== +==26181== +==26181== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulation_valgrind.txt +==26181== +==26181== +==26181== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26181== +==26181== +==26181== +==26181== HEAP SUMMARY: +==26181== in use at exit: 618,370 bytes in 8,239 blocks +==26181== total heap usage: 145,392 allocs, 137,153 frees, 1,366,617,409 bytes allocated +==26181== +==26181== LEAK SUMMARY: +==26181== definitely lost: 0 bytes in 0 blocks +==26181== indirectly lost: 0 bytes in 0 blocks +==26181== possibly lost: 0 bytes in 0 blocks +==26181== still reachable: 56 bytes in 3 blocks +==26181== suppressed: 618,314 bytes in 8,236 blocks +==26181== Reachable blocks (those to which a pointer was found) are not shown. +==26181== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26181== +==26181== For lists of detected and suppressed errors, rerun with: -s +==26181== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMeshUtilityFunctions_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMeshUtilityFunctions_valgrind.txt new file mode 100644 index 000000000..d83fd0d56 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMeshUtilityFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24667== Memcheck, a memory error detector +==24667== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24667== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24667== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshUtilityFunctions -malloc_debug -malloc_dump -memory_info +==24667== Parent PID: 24057 +==24667== +==24667== +==24667== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24667== Open file descriptor 12: +==24667== at 0x69A607D: pipe (pipe.c:29) +==24667== by 0x100CC07D: ??? +==24667== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24667== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24667== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24667== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24667== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24667== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24667== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24667== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24667== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24667== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24667== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24667== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24667== +==24667== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24667== at 0x69AAA1C: __open_nocancel (open64_nocancel.c:39) +==24667== by 0x692EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24667== by 0x662C822: ??? +==24667== by 0x662C96F: ??? +==24667== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24667== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24667== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24667== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24667== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24667== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24667== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24667== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24667== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24667== by 0x11E530: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24667== by 0x119E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24667== by 0x11C2F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24667== by 0x11C1F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24667== by 0x11C805: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24667== by 0x118635: main (TestMeshUtilityFunctions.cpp:18) +==24667== +==24667== Open file descriptor 158: +==24667== +==24667== +==24667== Open file descriptor 155: +==24667== +==24667== +==24667== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshUtilityFunctions_valgrind.txt +==24667== +==24667== +==24667== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24667== +==24667== +==24667== +==24667== HEAP SUMMARY: +==24667== in use at exit: 620,794 bytes in 8,239 blocks +==24667== total heap usage: 47,349 allocs, 39,110 frees, 1,338,387,561 bytes allocated +==24667== +==24667== LEAK SUMMARY: +==24667== definitely lost: 0 bytes in 0 blocks +==24667== indirectly lost: 0 bytes in 0 blocks +==24667== possibly lost: 0 bytes in 0 blocks +==24667== still reachable: 2,576 bytes in 3 blocks +==24667== suppressed: 618,218 bytes in 8,236 blocks +==24667== Reachable blocks (those to which a pointer was found) are not shown. +==24667== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24667== +==24667== For lists of detected and suppressed errors, rerun with: -s +==24667== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMeshWriters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMeshWriters_valgrind.txt new file mode 100644 index 000000000..440a8a439 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24806== Memcheck, a memory error detector +==24806== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24806== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24806== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info +==24806== Parent PID: 24057 +==24806== +==24806== +==24806== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24806== Open file descriptor 12: +==24806== at 0x81F807D: pipe (pipe.c:29) +==24806== by 0x100CC07D: ??? +==24806== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24806== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24806== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24806== by 0x6686D38: PetscInitialize (pinit.c:924) +==24806== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24806== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24806== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24806== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24806== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24806== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24806== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24806== by 0x13F235: main (TestMeshWriters.cpp:19) +==24806== +==24806== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24806== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24806== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24806== by 0x791B822: ??? +==24806== by 0x791B96F: ??? +==24806== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24806== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24806== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24806== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24806== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24806== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24806== by 0x6686D38: PetscInitialize (pinit.c:924) +==24806== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24806== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24806== by 0x1482F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24806== by 0x140E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24806== by 0x143F06: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24806== by 0x143DA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24806== by 0x14443D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24806== by 0x13F235: main (TestMeshWriters.cpp:19) +==24806== +==24806== Open file descriptor 158: +==24806== +==24806== +==24806== Open file descriptor 155: +==24806== +==24806== +==24806== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshWriters_valgrind.txt +==24806== +==24806== +==24806== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24806== +==24806== +==24806== +==24806== HEAP SUMMARY: +==24806== in use at exit: 618,242 bytes in 8,238 blocks +==24806== total heap usage: 187,274 allocs, 179,036 frees, 1,352,174,997 bytes allocated +==24806== +==24806== LEAK SUMMARY: +==24806== definitely lost: 0 bytes in 0 blocks +==24806== indirectly lost: 0 bytes in 0 blocks +==24806== possibly lost: 0 bytes in 0 blocks +==24806== still reachable: 24 bytes in 2 blocks +==24806== suppressed: 618,218 bytes in 8,236 blocks +==24806== Reachable blocks (those to which a pointer was found) are not shown. +==24806== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24806== +==24806== For lists of detected and suppressed errors, rerun with: -s +==24806== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMirams2010WntOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMirams2010WntOdeSystem_valgrind.txt new file mode 100644 index 000000000..020644408 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMirams2010WntOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40588== Memcheck, a memory error detector +==40588== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40588== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40588== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info +==40588== Parent PID: 24057 +==40588== +==40588== +==40588== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40588== Open file descriptor 12: +==40588== at 0xF39D07D: pipe (pipe.c:29) +==40588== by 0x1B37607D: ??? +==40588== by 0x165814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40588== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40588== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40588== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40588== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40588== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40588== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40588== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40588== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40588== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40588== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40588== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40588== +==40588== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40588== at 0xF3A1A1C: __open_nocancel (open64_nocancel.c:39) +==40588== by 0xF325BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40588== by 0xEFE3822: ??? +==40588== by 0xEFE396F: ??? +==40588== by 0x166266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40588== by 0x16626938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40588== by 0x165DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40588== by 0x165812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40588== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40588== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40588== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40588== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40588== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40588== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40588== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40588== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40588== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40588== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40588== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) +==40588== +==40588== Open file descriptor 158: +==40588== +==40588== +==40588== Open file descriptor 155: +==40588== +==40588== +==40588== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt +==40588== +==40588== +==40588== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40588== +==40588== +==40588== +==40588== HEAP SUMMARY: +==40588== in use at exit: 618,386 bytes in 8,239 blocks +==40588== total heap usage: 66,833 allocs, 58,594 frees, 1,340,373,478 bytes allocated +==40588== +==40588== LEAK SUMMARY: +==40588== definitely lost: 0 bytes in 0 blocks +==40588== indirectly lost: 0 bytes in 0 blocks +==40588== possibly lost: 0 bytes in 0 blocks +==40588== still reachable: 56 bytes in 3 blocks +==40588== suppressed: 618,330 bytes in 8,236 blocks +==40588== Reachable blocks (those to which a pointer was found) are not shown. +==40588== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40588== +==40588== For lists of detected and suppressed errors, rerun with: -s +==40588== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMixedDimensionMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMixedDimensionMesh_valgrind.txt new file mode 100644 index 000000000..6a9002842 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMixedDimensionMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24467== Memcheck, a memory error detector +==24467== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24467== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24467== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMixedDimensionMesh -malloc_debug -malloc_dump -memory_info +==24467== Parent PID: 24057 +==24467== +==24467== +==24467== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24467== Open file descriptor 12: +==24467== at 0x815307D: pipe (pipe.c:29) +==24467== by 0x100CC07D: ??? +==24467== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24467== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24467== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24467== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24467== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24467== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24467== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24467== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24467== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24467== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24467== +==24467== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24467== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24467== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24467== by 0x659D822: ??? +==24467== by 0x659D96F: ??? +==24467== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24467== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24467== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24467== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24467== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24467== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24467== by 0x125042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24467== by 0x11E27D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24467== by 0x121016: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24467== by 0x120EB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24467== by 0x12154D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24467== by 0x11C6A5: main (TestMixedDimensionMesh.cpp:19) +==24467== +==24467== Open file descriptor 158: +==24467== +==24467== +==24467== Open file descriptor 155: +==24467== +==24467== +==24467== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMixedDimensionMesh_valgrind.txt +==24467== +==24467== +==24467== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24467== +==24467== +==24467== +==24467== HEAP SUMMARY: +==24467== in use at exit: 618,242 bytes in 8,238 blocks +==24467== total heap usage: 121,798 allocs, 113,560 frees, 1,343,655,776 bytes allocated +==24467== +==24467== LEAK SUMMARY: +==24467== definitely lost: 0 bytes in 0 blocks +==24467== indirectly lost: 0 bytes in 0 blocks +==24467== possibly lost: 0 bytes in 0 blocks +==24467== still reachable: 24 bytes in 2 blocks +==24467== suppressed: 618,218 bytes in 8,236 blocks +==24467== Reachable blocks (those to which a pointer was found) are not shown. +==24467== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24467== +==24467== For lists of detected and suppressed errors, rerun with: -s +==24467== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMockEulerIvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMockEulerIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..3d11f0159 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMockEulerIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25044== Memcheck, a memory error detector +==25044== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25044== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25044== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestMockEulerIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25044== Parent PID: 24057 +==25044== +==25044== +==25044== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25044== Open file descriptor 12: +==25044== at 0x4F5207D: pipe (pipe.c:29) +==25044== by 0xB1E607D: ??? +==25044== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25044== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25044== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25044== by 0x5308D38: PetscInitialize (pinit.c:924) +==25044== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25044== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25044== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25044== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25044== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25044== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25044== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25044== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==25044== +==25044== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25044== at 0x4F56A1C: __open_nocancel (open64_nocancel.c:39) +==25044== by 0x4EDABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25044== by 0x4B7C822: ??? +==25044== by 0x4B7C96F: ??? +==25044== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25044== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25044== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25044== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25044== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25044== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25044== by 0x5308D38: PetscInitialize (pinit.c:924) +==25044== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25044== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25044== by 0x123542: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25044== by 0x11E7E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25044== by 0x120D60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25044== by 0x120C5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25044== by 0x12126F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25044== by 0x11CE65: main (TestMockEulerIvpOdeSolver.cpp:18) +==25044== +==25044== Open file descriptor 158: +==25044== +==25044== +==25044== Open file descriptor 155: +==25044== +==25044== +==25044== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMockEulerIvpOdeSolver_valgrind.txt +==25044== +==25044== +==25044== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25044== +==25044== +==25044== +==25044== HEAP SUMMARY: +==25044== in use at exit: 617,938 bytes in 8,238 blocks +==25044== total heap usage: 45,127 allocs, 36,889 frees, 1,338,195,116 bytes allocated +==25044== +==25044== LEAK SUMMARY: +==25044== definitely lost: 0 bytes in 0 blocks +==25044== indirectly lost: 0 bytes in 0 blocks +==25044== possibly lost: 0 bytes in 0 blocks +==25044== still reachable: 24 bytes in 2 blocks +==25044== suppressed: 617,914 bytes in 8,236 blocks +==25044== Reachable blocks (those to which a pointer was found) are not shown. +==25044== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25044== +==25044== For lists of detected and suppressed errors, rerun with: -s +==25044== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestModernCppFeatures_valgrind.txt b/log-files/2025-02-12_21-17-58/TestModernCppFeatures_valgrind.txt new file mode 100644 index 000000000..e20c01b72 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestModernCppFeatures_valgrind.txt @@ -0,0 +1,73 @@ +==24089== Memcheck, a memory error detector +==24089== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24089== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24089== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info +==24089== Parent PID: 24057 +==24089== +==24089== +==24089== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24089== Open file descriptor 12: +==24089== at 0x616907D: pipe (pipe.c:29) +==24089== by 0xAEA507D: ??? +==24089== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24089== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24089== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24089== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24089== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24089== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24089== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24089== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24089== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24089== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==24089== +==24089== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24089== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24089== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24089== by 0x5CB8822: ??? +==24089== by 0x5CB896F: ??? +==24089== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24089== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24089== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24089== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24089== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24089== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24089== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24089== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24089== by 0x115753: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24089== by 0x111013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24089== by 0x1137AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24089== by 0x1136AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24089== by 0x113CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24089== by 0x10F815: main (TestModernCppFeatures.cpp:18) +==24089== +==24089== Open file descriptor 158: +==24089== +==24089== +==24089== Open file descriptor 155: +==24089== +==24089== +==24089== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModernCppFeatures_valgrind.txt +==24089== +==24089== +==24089== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24089== +==24089== +==24089== +==24089== HEAP SUMMARY: +==24089== in use at exit: 617,874 bytes in 8,238 blocks +==24089== total heap usage: 44,921 allocs, 36,683 frees, 1,338,161,838 bytes allocated +==24089== +==24089== LEAK SUMMARY: +==24089== definitely lost: 0 bytes in 0 blocks +==24089== indirectly lost: 0 bytes in 0 blocks +==24089== possibly lost: 0 bytes in 0 blocks +==24089== still reachable: 24 bytes in 2 blocks +==24089== suppressed: 617,850 bytes in 8,236 blocks +==24089== Reachable blocks (those to which a pointer was found) are not shown. +==24089== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24089== +==24089== For lists of detected and suppressed errors, rerun with: -s +==24089== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestModifiers_valgrind.txt b/log-files/2025-02-12_21-17-58/TestModifiers_valgrind.txt new file mode 100644 index 000000000..e827fac8b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestModifiers_valgrind.txt @@ -0,0 +1,73 @@ +==42965== Memcheck, a memory error detector +==42965== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==42965== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==42965== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestModifiers -malloc_debug -malloc_dump -memory_info +==42965== Parent PID: 24057 +==42965== +==42965== +==42965== FILE DESCRIPTORS: 9 open (3 std) at exit. +==42965== Open file descriptor 12: +==42965== at 0x88DC07D: pipe (pipe.c:29) +==42965== by 0x1432F07D: ??? +==42965== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42965== by 0x9FD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42965== by 0x9F6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42965== by 0x8C65D38: PetscInitialize (pinit.c:924) +==42965== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42965== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42965== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42965== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42965== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42965== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42965== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42965== by 0x11DF45: main (TestModifiers.cpp:19) +==42965== +==42965== Open file descriptor 8: /dev/shm/open_mpi.0000 +==42965== at 0x88E0A1C: __open_nocancel (open64_nocancel.c:39) +==42965== by 0x8864BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==42965== by 0x841F822: ??? +==42965== by 0x841F96F: ??? +==42965== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42965== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42965== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==42965== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==42965== by 0x9FD5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42965== by 0x9F6ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==42965== by 0x8C65D38: PetscInitialize (pinit.c:924) +==42965== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==42965== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==42965== by 0x124F74: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==42965== by 0x11FB1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==42965== by 0x12265E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==42965== by 0x1224FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==42965== by 0x122B95: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==42965== by 0x11DF45: main (TestModifiers.cpp:19) +==42965== +==42965== Open file descriptor 158: +==42965== +==42965== +==42965== Open file descriptor 155: +==42965== +==42965== +==42965== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestModifiers_valgrind.txt +==42965== +==42965== +==42965== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==42965== +==42965== +==42965== +==42965== HEAP SUMMARY: +==42965== in use at exit: 620,197 bytes in 8,242 blocks +==42965== total heap usage: 50,663 allocs, 42,421 frees, 1,339,475,433 bytes allocated +==42965== +==42965== LEAK SUMMARY: +==42965== definitely lost: 0 bytes in 0 blocks +==42965== indirectly lost: 0 bytes in 0 blocks +==42965== possibly lost: 0 bytes in 0 blocks +==42965== still reachable: 1,867 bytes in 6 blocks +==42965== suppressed: 618,330 bytes in 8,236 blocks +==42965== Reachable blocks (those to which a pointer was found) are not shown. +==42965== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==42965== +==42965== For lists of detected and suppressed errors, rerun with: -s +==42965== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainConductionVelocity_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainConductionVelocity_valgrind.txt new file mode 100644 index 000000000..bcccb1ad5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainConductionVelocity_valgrind.txt @@ -0,0 +1,73 @@ +==43680== Memcheck, a memory error detector +==43680== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43680== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43680== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainConductionVelocity -malloc_debug -malloc_dump -memory_info +==43680== Parent PID: 24057 +==43680== +==43680== +==43680== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43680== Open file descriptor 12: +==43680== at 0xA85D07D: pipe (pipe.c:29) +==43680== by 0x1432F07D: ??? +==43680== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43680== by 0xBF58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43680== by 0xBEF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43680== by 0xABE6D38: PetscInitialize (pinit.c:924) +==43680== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43680== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43680== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43680== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43680== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43680== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43680== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43680== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43680== +==43680== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43680== at 0xA861A1C: __open_nocancel (open64_nocancel.c:39) +==43680== by 0xA7E5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43680== by 0xA184822: ??? +==43680== by 0xA18496F: ??? +==43680== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43680== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43680== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43680== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43680== by 0xBF58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43680== by 0xBEF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43680== by 0xABE6D38: PetscInitialize (pinit.c:924) +==43680== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43680== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43680== by 0x126B4A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43680== by 0x121E0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43680== by 0x1248CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43680== by 0x12476C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43680== by 0x124E03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43680== by 0x120235: main (TestMonodomainConductionVelocity.cpp:19) +==43680== +==43680== Open file descriptor 158: +==43680== +==43680== +==43680== Open file descriptor 155: +==43680== +==43680== +==43680== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainConductionVelocity_valgrind.txt +==43680== +==43680== +==43680== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43680== +==43680== +==43680== +==43680== HEAP SUMMARY: +==43680== in use at exit: 618,834 bytes in 8,248 blocks +==43680== total heap usage: 385,467 allocs, 377,219 frees, 1,419,223,265 bytes allocated +==43680== +==43680== LEAK SUMMARY: +==43680== definitely lost: 0 bytes in 0 blocks +==43680== indirectly lost: 0 bytes in 0 blocks +==43680== possibly lost: 0 bytes in 0 blocks +==43680== still reachable: 24 bytes in 2 blocks +==43680== suppressed: 618,810 bytes in 8,246 blocks +==43680== Reachable blocks (those to which a pointer was found) are not shown. +==43680== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43680== +==43680== For lists of detected and suppressed errors, rerun with: -s +==43680== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainFitzHughNagumo_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainFitzHughNagumo_valgrind.txt new file mode 100644 index 000000000..2f418c913 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainFitzHughNagumo_valgrind.txt @@ -0,0 +1,73 @@ +==43740== Memcheck, a memory error detector +==43740== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43740== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43740== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainFitzHughNagumo -malloc_debug -malloc_dump -memory_info +==43740== Parent PID: 24057 +==43740== +==43740== +==43740== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43740== Open file descriptor 12: +==43740== at 0xA7EA07D: pipe (pipe.c:29) +==43740== by 0x1432F07D: ??? +==43740== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43740== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43740== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43740== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43740== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43740== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43740== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43740== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43740== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43740== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43740== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43740== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43740== +==43740== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43740== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==43740== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43740== by 0xA111822: ??? +==43740== by 0xA11196F: ??? +==43740== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43740== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43740== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43740== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43740== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43740== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43740== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43740== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43740== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43740== by 0x1211B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43740== by 0x11C2B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43740== by 0x11E6C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43740== by 0x11E5BE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43740== by 0x11EBD1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43740== by 0x11AAB5: main (TestMonodomainFitzHughNagumo.cpp:18) +==43740== +==43740== Open file descriptor 158: +==43740== +==43740== +==43740== Open file descriptor 155: +==43740== +==43740== +==43740== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainFitzHughNagumo_valgrind.txt +==43740== +==43740== +==43740== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43740== +==43740== +==43740== +==43740== HEAP SUMMARY: +==43740== in use at exit: 618,834 bytes in 8,248 blocks +==43740== total heap usage: 80,865 allocs, 72,617 frees, 1,344,239,468 bytes allocated +==43740== +==43740== LEAK SUMMARY: +==43740== definitely lost: 0 bytes in 0 blocks +==43740== indirectly lost: 0 bytes in 0 blocks +==43740== possibly lost: 0 bytes in 0 blocks +==43740== still reachable: 24 bytes in 2 blocks +==43740== suppressed: 618,810 bytes in 8,246 blocks +==43740== Reachable blocks (those to which a pointer was found) are not shown. +==43740== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43740== +==43740== For lists of detected and suppressed errors, rerun with: -s +==43740== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainMassLumping_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainMassLumping_valgrind.txt new file mode 100644 index 000000000..afac892cf --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainMassLumping_valgrind.txt @@ -0,0 +1,73 @@ +==43748== Memcheck, a memory error detector +==43748== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43748== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43748== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info +==43748== Parent PID: 24057 +==43748== +==43748== +==43748== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43748== Open file descriptor 12: +==43748== at 0xA89207D: pipe (pipe.c:29) +==43748== by 0x1432F07D: ??? +==43748== by 0xD5A94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43748== by 0xA180418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43748== by 0xA119D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43748== by 0xAC1BD38: PetscInitialize (pinit.c:924) +==43748== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43748== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43748== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43748== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43748== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43748== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43748== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43748== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43748== +==43748== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43748== at 0xA896A1C: __open_nocancel (open64_nocancel.c:39) +==43748== by 0xA81ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43748== by 0xA082822: ??? +==43748== by 0xA08296F: ??? +==43748== by 0xD64E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43748== by 0xD64E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43748== by 0xD604922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43748== by 0xD5A92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43748== by 0xA180418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43748== by 0xA119D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43748== by 0xAC1BD38: PetscInitialize (pinit.c:924) +==43748== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43748== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43748== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43748== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43748== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43748== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43748== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43748== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) +==43748== +==43748== Open file descriptor 158: +==43748== +==43748== +==43748== Open file descriptor 155: +==43748== +==43748== +==43748== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt +==43748== +==43748== +==43748== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43748== +==43748== +==43748== +==43748== HEAP SUMMARY: +==43748== in use at exit: 618,761 bytes in 8,244 blocks +==43748== total heap usage: 406,621 allocs, 398,377 frees, 1,539,926,368 bytes allocated +==43748== +==43748== LEAK SUMMARY: +==43748== definitely lost: 0 bytes in 0 blocks +==43748== indirectly lost: 0 bytes in 0 blocks +==43748== possibly lost: 0 bytes in 0 blocks +==43748== still reachable: 24 bytes in 2 blocks +==43748== suppressed: 618,737 bytes in 8,242 blocks +==43748== Reachable blocks (those to which a pointer was found) are not shown. +==43748== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43748== +==43748== For lists of detected and suppressed errors, rerun with: -s +==43748== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainProblem_valgrind.txt new file mode 100644 index 000000000..c4887d282 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainProblem_valgrind.txt @@ -0,0 +1,74 @@ +==43695== Memcheck, a memory error detector +==43695== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43695== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43695== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info +==43695== Parent PID: 24057 +==43695== +==43695== Warning: invalid file descriptor -1 in syscall close() +==43695== +==43695== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43695== Open file descriptor 12: +==43695== at 0xC10B07D: pipe (pipe.c:29) +==43695== by 0x1432F07D: ??? +==43695== by 0xFFF54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43695== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==43695== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43695== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43695== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43695== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43695== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43695== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43695== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43695== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43695== +==43695== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43695== at 0xC10FA1C: __open_nocancel (open64_nocancel.c:39) +==43695== by 0xC093BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43695== by 0xA184822: ??? +==43695== by 0xA18496F: ??? +==43695== by 0x1009C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43695== by 0x1009C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43695== by 0x10052922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43695== by 0xFFF52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43695== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43695== by 0xA2D4D38: PetscInitialize (pinit.c:924) +==43695== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43695== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43695== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43695== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43695== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43695== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43695== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43695== by 0x13FC05: main (TestMonodomainProblem.cpp:19) +==43695== +==43695== Open file descriptor 158: +==43695== +==43695== +==43695== Open file descriptor 155: +==43695== +==43695== +==43695== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt +==43695== +==43695== +==43695== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43695== +==43695== +==43695== +==43695== HEAP SUMMARY: +==43695== in use at exit: 618,761 bytes in 8,244 blocks +==43695== total heap usage: 6,613,785 allocs, 6,605,541 frees, 4,016,613,536 bytes allocated +==43695== +==43695== LEAK SUMMARY: +==43695== definitely lost: 0 bytes in 0 blocks +==43695== indirectly lost: 0 bytes in 0 blocks +==43695== possibly lost: 0 bytes in 0 blocks +==43695== still reachable: 24 bytes in 2 blocks +==43695== suppressed: 618,737 bytes in 8,242 blocks +==43695== Reachable blocks (those to which a pointer was found) are not shown. +==43695== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43695== +==43695== For lists of detected and suppressed errors, rerun with: -s +==43695== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt new file mode 100644 index 000000000..c032824e5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43702== Memcheck, a memory error detector +==43702== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43702== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43702== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info +==43702== Parent PID: 24057 +==43702== +==43702== +==43702== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43702== Open file descriptor 12: +==43702== at 0xC05F07D: pipe (pipe.c:29) +==43702== by 0x1432F07D: ??? +==43702== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43702== by 0xC3DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43702== by 0xC375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43702== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43702== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43702== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43702== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43702== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43702== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43702== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43702== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43702== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43702== +==43702== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43702== at 0xC063A1C: __open_nocancel (open64_nocancel.c:39) +==43702== by 0xBFE7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43702== by 0xB8A1822: ??? +==43702== by 0xB8A196F: ??? +==43702== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43702== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43702== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43702== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43702== by 0xC3DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43702== by 0xC375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43702== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43702== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43702== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43702== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43702== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43702== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43702== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43702== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43702== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) +==43702== +==43702== Open file descriptor 158: +==43702== +==43702== +==43702== Open file descriptor 155: +==43702== +==43702== +==43702== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt +==43702== +==43702== +==43702== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43702== +==43702== +==43702== +==43702== HEAP SUMMARY: +==43702== in use at exit: 618,834 bytes in 8,248 blocks +==43702== total heap usage: 83,438 allocs, 75,190 frees, 1,344,977,015 bytes allocated +==43702== +==43702== LEAK SUMMARY: +==43702== definitely lost: 0 bytes in 0 blocks +==43702== indirectly lost: 0 bytes in 0 blocks +==43702== possibly lost: 0 bytes in 0 blocks +==43702== still reachable: 24 bytes in 2 blocks +==43702== suppressed: 618,810 bytes in 8,246 blocks +==43702== Reachable blocks (those to which a pointer was found) are not shown. +==43702== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43702== +==43702== For lists of detected and suppressed errors, rerun with: -s +==43702== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 40 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainPurkinjeProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainPurkinjeProblem_valgrind.txt new file mode 100644 index 000000000..54ecdf2e4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainPurkinjeProblem_valgrind.txt @@ -0,0 +1,73 @@ +==43717== Memcheck, a memory error detector +==43717== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43717== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43717== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info +==43717== Parent PID: 24057 +==43717== +==43717== +==43717== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43717== Open file descriptor 12: +==43717== at 0xA75B07D: pipe (pipe.c:29) +==43717== by 0x1432F07D: ??? +==43717== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43717== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43717== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43717== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43717== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43717== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43717== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43717== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43717== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43717== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43717== +==43717== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43717== at 0xA75FA1C: __open_nocancel (open64_nocancel.c:39) +==43717== by 0xA6E3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43717== by 0xA082822: ??? +==43717== by 0xA08296F: ??? +==43717== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43717== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43717== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43717== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43717== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43717== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43717== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43717== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43717== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43717== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43717== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43717== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43717== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43717== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) +==43717== +==43717== Open file descriptor 158: +==43717== +==43717== +==43717== Open file descriptor 155: +==43717== +==43717== +==43717== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt +==43717== +==43717== +==43717== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43717== +==43717== +==43717== +==43717== HEAP SUMMARY: +==43717== in use at exit: 618,761 bytes in 8,244 blocks +==43717== total heap usage: 1,149,690 allocs, 1,141,446 frees, 2,579,750,564 bytes allocated +==43717== +==43717== LEAK SUMMARY: +==43717== definitely lost: 0 bytes in 0 blocks +==43717== indirectly lost: 0 bytes in 0 blocks +==43717== possibly lost: 0 bytes in 0 blocks +==43717== still reachable: 24 bytes in 2 blocks +==43717== suppressed: 618,737 bytes in 8,242 blocks +==43717== Reachable blocks (those to which a pointer was found) are not shown. +==43717== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43717== +==43717== For lists of detected and suppressed errors, rerun with: -s +==43717== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 65 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainStiffnessMatrixAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainStiffnessMatrixAssembler_valgrind.txt new file mode 100644 index 000000000..e375215c8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainStiffnessMatrixAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==43679== Memcheck, a memory error detector +==43679== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43679== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43679== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainStiffnessMatrixAssembler -malloc_debug -malloc_dump -memory_info +==43679== Parent PID: 24057 +==43679== +==43679== +==43679== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43679== Open file descriptor 12: +==43679== at 0xBFEC07D: pipe (pipe.c:29) +==43679== by 0x1432F07D: ??? +==43679== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43679== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43679== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43679== by 0xA597D38: PetscInitialize (pinit.c:924) +==43679== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43679== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43679== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43679== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43679== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43679== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43679== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43679== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43679== +==43679== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43679== at 0xBFF0A1C: __open_nocancel (open64_nocancel.c:39) +==43679== by 0xBF74BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43679== by 0xB82C822: ??? +==43679== by 0xB82C96F: ??? +==43679== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43679== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43679== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43679== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43679== by 0xC369418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43679== by 0xC302D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43679== by 0xA597D38: PetscInitialize (pinit.c:924) +==43679== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43679== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43679== by 0x13BAD8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43679== by 0x136853: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43679== by 0x1393FA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43679== by 0x1392F5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43679== by 0x139909: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43679== by 0x135055: main (TestMonodomainStiffnessMatrixAssembler.cpp:18) +==43679== +==43679== Open file descriptor 158: +==43679== +==43679== +==43679== Open file descriptor 155: +==43679== +==43679== +==43679== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainStiffnessMatrixAssembler_valgrind.txt +==43679== +==43679== +==43679== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43679== +==43679== +==43679== +==43679== HEAP SUMMARY: +==43679== in use at exit: 618,354 bytes in 8,238 blocks +==43679== total heap usage: 49,643 allocs, 41,405 frees, 1,338,640,430 bytes allocated +==43679== +==43679== LEAK SUMMARY: +==43679== definitely lost: 0 bytes in 0 blocks +==43679== indirectly lost: 0 bytes in 0 blocks +==43679== possibly lost: 0 bytes in 0 blocks +==43679== still reachable: 24 bytes in 2 blocks +==43679== suppressed: 618,330 bytes in 8,236 blocks +==43679== Reachable blocks (those to which a pointer was found) are not shown. +==43679== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43679== +==43679== For lists of detected and suppressed errors, rerun with: -s +==43679== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainTissue_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainTissue_valgrind.txt new file mode 100644 index 000000000..dc46c1393 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainTissue_valgrind.txt @@ -0,0 +1,73 @@ +==43750== Memcheck, a memory error detector +==43750== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43750== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43750== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainTissue -malloc_debug -malloc_dump -memory_info +==43750== Parent PID: 24057 +==43750== +==43750== +==43750== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43750== Open file descriptor 12: +==43750== at 0xBB1B07D: pipe (pipe.c:29) +==43750== by 0x1432F07D: ??? +==43750== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43750== by 0xBE96418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43750== by 0xBE2FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43750== by 0xA1D0D38: PetscInitialize (pinit.c:924) +==43750== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43750== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43750== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43750== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43750== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43750== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43750== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43750== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43750== +==43750== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43750== at 0xBB1FA1C: __open_nocancel (open64_nocancel.c:39) +==43750== by 0xBAA3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43750== by 0xA082822: ??? +==43750== by 0xA08296F: ??? +==43750== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43750== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43750== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43750== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43750== by 0xBE96418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43750== by 0xBE2FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43750== by 0xA1D0D38: PetscInitialize (pinit.c:924) +==43750== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43750== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43750== by 0x1294CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43750== by 0x1242BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43750== by 0x126FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43750== by 0x126E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43750== by 0x1274D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43750== by 0x1226E5: main (TestMonodomainTissue.cpp:19) +==43750== +==43750== Open file descriptor 158: +==43750== +==43750== +==43750== Open file descriptor 155: +==43750== +==43750== +==43750== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainTissue_valgrind.txt +==43750== +==43750== +==43750== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43750== +==43750== +==43750== +==43750== HEAP SUMMARY: +==43750== in use at exit: 618,354 bytes in 8,238 blocks +==43750== total heap usage: 260,747 allocs, 252,509 frees, 1,394,489,077 bytes allocated +==43750== +==43750== LEAK SUMMARY: +==43750== definitely lost: 0 bytes in 0 blocks +==43750== indirectly lost: 0 bytes in 0 blocks +==43750== possibly lost: 0 bytes in 0 blocks +==43750== still reachable: 24 bytes in 2 blocks +==43750== suppressed: 618,330 bytes in 8,236 blocks +==43750== Reachable blocks (those to which a pointer was found) are not shown. +==43750== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43750== +==43750== For lists of detected and suppressed errors, rerun with: -s +==43750== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainWithSvi_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainWithSvi_valgrind.txt new file mode 100644 index 000000000..315882f58 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainWithSvi_valgrind.txt @@ -0,0 +1,73 @@ +==43753== Memcheck, a memory error detector +==43753== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43753== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43753== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithSvi -malloc_debug -malloc_dump -memory_info +==43753== Parent PID: 24057 +==43753== +==43753== +==43753== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43753== Open file descriptor 12: +==43753== at 0xA7EA07D: pipe (pipe.c:29) +==43753== by 0x1432F07D: ??? +==43753== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43753== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43753== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43753== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43753== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43753== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43753== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43753== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43753== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43753== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43753== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43753== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43753== +==43753== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43753== at 0xA7EEA1C: __open_nocancel (open64_nocancel.c:39) +==43753== by 0xA772BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43753== by 0xA111822: ??? +==43753== by 0xA11196F: ??? +==43753== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43753== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43753== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43753== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43753== by 0xBEE3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43753== by 0xBE7CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43753== by 0xAB73D38: PetscInitialize (pinit.c:924) +==43753== by 0xA0D11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43753== by 0xA0D1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43753== by 0x123842: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43753== by 0x11ED4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43753== by 0x121416: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43753== by 0x1212B6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43753== by 0x12194D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43753== by 0x11D175: main (TestMonodomainWithSvi.cpp:19) +==43753== +==43753== Open file descriptor 158: +==43753== +==43753== +==43753== Open file descriptor 155: +==43753== +==43753== +==43753== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithSvi_valgrind.txt +==43753== +==43753== +==43753== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43753== +==43753== +==43753== +==43753== HEAP SUMMARY: +==43753== in use at exit: 618,761 bytes in 8,244 blocks +==43753== total heap usage: 3,755,451 allocs, 3,747,207 frees, 1,783,480,811 bytes allocated +==43753== +==43753== LEAK SUMMARY: +==43753== definitely lost: 0 bytes in 0 blocks +==43753== indirectly lost: 0 bytes in 0 blocks +==43753== possibly lost: 0 bytes in 0 blocks +==43753== still reachable: 24 bytes in 2 blocks +==43753== suppressed: 618,737 bytes in 8,242 blocks +==43753== Reachable blocks (those to which a pointer was found) are not shown. +==43753== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43753== +==43753== For lists of detected and suppressed errors, rerun with: -s +==43753== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 75 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestMonodomainWithTimeAdaptivity_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMonodomainWithTimeAdaptivity_valgrind.txt new file mode 100644 index 000000000..845525469 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMonodomainWithTimeAdaptivity_valgrind.txt @@ -0,0 +1,73 @@ +==43836== Memcheck, a memory error detector +==43836== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43836== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43836== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainWithTimeAdaptivity -malloc_debug -malloc_dump -memory_info +==43836== Parent PID: 24057 +==43836== +==43836== +==43836== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43836== Open file descriptor 12: +==43836== at 0xBC1007D: pipe (pipe.c:29) +==43836== by 0x1432F07D: ??? +==43836== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43836== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43836== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43836== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43836== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43836== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43836== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43836== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43836== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43836== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43836== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43836== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43836== +==43836== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43836== at 0xBC14A1C: __open_nocancel (open64_nocancel.c:39) +==43836== by 0xBB98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43836== by 0xB400822: ??? +==43836== by 0xB40096F: ??? +==43836== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43836== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43836== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43836== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43836== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43836== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43836== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43836== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43836== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43836== by 0x127824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43836== by 0x121AED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43836== by 0x124B6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43836== by 0x124A0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43836== by 0x1250A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43836== by 0x11FF15: main (TestMonodomainWithTimeAdaptivity.cpp:19) +==43836== +==43836== Open file descriptor 158: +==43836== +==43836== +==43836== Open file descriptor 155: +==43836== +==43836== +==43836== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainWithTimeAdaptivity_valgrind.txt +==43836== +==43836== +==43836== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43836== +==43836== +==43836== +==43836== HEAP SUMMARY: +==43836== in use at exit: 618,761 bytes in 8,244 blocks +==43836== total heap usage: 1,145,049 allocs, 1,136,805 frees, 1,400,681,302 bytes allocated +==43836== +==43836== LEAK SUMMARY: +==43836== definitely lost: 0 bytes in 0 blocks +==43836== indirectly lost: 0 bytes in 0 blocks +==43836== possibly lost: 0 bytes in 0 blocks +==43836== still reachable: 24 bytes in 2 blocks +==43836== suppressed: 618,737 bytes in 8,242 blocks +==43836== Reachable blocks (those to which a pointer was found) are not shown. +==43836== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43836== +==43836== For lists of detected and suppressed errors, rerun with: -s +==43836== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 45 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMoreMechanics_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMoreMechanics_valgrind.txt new file mode 100644 index 000000000..bff829396 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMoreMechanics_valgrind.txt @@ -0,0 +1,73 @@ +==25368== Memcheck, a memory error detector +==25368== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25368== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25368== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info +==25368== Parent PID: 24057 +==25368== +==25368== +==25368== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25368== Open file descriptor 12: +==25368== at 0x866F07D: pipe (pipe.c:29) +==25368== by 0x106E107D: ??? +==25368== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25368== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25368== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25368== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25368== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25368== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25368== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25368== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25368== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25368== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25368== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25368== by 0x135775: main (TestMoreMechanics.cpp:19) +==25368== +==25368== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25368== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25368== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25368== by 0x7EC9822: ??? +==25368== by 0x7EC996F: ??? +==25368== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25368== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25368== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25368== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25368== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25368== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25368== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25368== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25368== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25368== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25368== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25368== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25368== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25368== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25368== by 0x135775: main (TestMoreMechanics.cpp:19) +==25368== +==25368== Open file descriptor 158: +==25368== +==25368== +==25368== Open file descriptor 155: +==25368== +==25368== +==25368== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt +==25368== +==25368== +==25368== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25368== +==25368== +==25368== +==25368== HEAP SUMMARY: +==25368== in use at exit: 618,217 bytes in 8,234 blocks +==25368== total heap usage: 417,199 allocs, 408,965 frees, 1,440,943,409 bytes allocated +==25368== +==25368== LEAK SUMMARY: +==25368== definitely lost: 0 bytes in 0 blocks +==25368== indirectly lost: 0 bytes in 0 blocks +==25368== possibly lost: 0 bytes in 0 blocks +==25368== still reachable: 24 bytes in 2 blocks +==25368== suppressed: 618,193 bytes in 8,232 blocks +==25368== Reachable blocks (those to which a pointer was found) are not shown. +==25368== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25368== +==25368== For lists of detected and suppressed errors, rerun with: -s +==25368== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestMultiLobeAirwayGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMultiLobeAirwayGenerator_valgrind.txt new file mode 100644 index 000000000..d208e7cc7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMultiLobeAirwayGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41394== Memcheck, a memory error detector +==41394== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41394== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41394== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info +==41394== Parent PID: 24057 +==41394== +==41394== +==41394== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41394== Open file descriptor 12: +==41394== at 0x8D3507D: pipe (pipe.c:29) +==41394== by 0x107AC07D: ??? +==41394== by 0xC0A64CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41394== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41394== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41394== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41394== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41394== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41394== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41394== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41394== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41394== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41394== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41394== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41394== +==41394== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41394== at 0x8D39A1C: __open_nocancel (open64_nocancel.c:39) +==41394== by 0x8CBDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41394== by 0x7A3B822: ??? +==41394== by 0x7A3B96F: ??? +==41394== by 0xC14B6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41394== by 0xC14B938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41394== by 0xC101922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41394== by 0xC0A62DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41394== by 0x7B39418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41394== by 0x7AD2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41394== by 0x67A6D38: PetscInitialize (pinit.c:924) +==41394== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41394== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41394== by 0x11A3B7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41394== by 0x11592D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41394== by 0x118434: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41394== by 0x1182D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41394== by 0x11896B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41394== by 0x113D55: main (TestMultiLobeAirwayGenerator.cpp:19) +==41394== +==41394== Open file descriptor 158: +==41394== +==41394== +==41394== Open file descriptor 155: +==41394== +==41394== +==41394== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMultiLobeAirwayGenerator_valgrind.txt +==41394== +==41394== +==41394== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41394== +==41394== +==41394== +==41394== HEAP SUMMARY: +==41394== in use at exit: 618,338 bytes in 8,238 blocks +==41394== total heap usage: 175,714 allocs, 167,476 frees, 1,419,543,611 bytes allocated +==41394== +==41394== LEAK SUMMARY: +==41394== definitely lost: 0 bytes in 0 blocks +==41394== indirectly lost: 0 bytes in 0 blocks +==41394== possibly lost: 0 bytes in 0 blocks +==41394== still reachable: 24 bytes in 2 blocks +==41394== suppressed: 618,314 bytes in 8,236 blocks +==41394== Reachable blocks (those to which a pointer was found) are not shown. +==41394== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41394== +==41394== For lists of detected and suppressed errors, rerun with: -s +==41394== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestMutableMeshRemesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMutableMeshRemesh_valgrind.txt new file mode 100644 index 000000000..2ae8186b3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMutableMeshRemesh_valgrind.txt @@ -0,0 +1,73 @@ +==24487== Memcheck, a memory error detector +==24487== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24487== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24487== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMeshRemesh -malloc_debug -malloc_dump -memory_info +==24487== Parent PID: 24057 +==24487== +==24487== +==24487== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24487== Open file descriptor 12: +==24487== at 0x6C5C07D: pipe (pipe.c:29) +==24487== by 0x100CC07D: ??? +==24487== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24487== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24487== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24487== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24487== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24487== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24487== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24487== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24487== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24487== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24487== +==24487== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24487== at 0x6C60A1C: __open_nocancel (open64_nocancel.c:39) +==24487== by 0x6BE4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24487== by 0x659D822: ??? +==24487== by 0x659D96F: ??? +==24487== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24487== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24487== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24487== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24487== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24487== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24487== by 0x1241D8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24487== by 0x11F1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24487== by 0x121F40: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24487== by 0x121DE0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24487== by 0x122477: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24487== by 0x11D615: main (TestMutableMeshRemesh.cpp:19) +==24487== +==24487== Open file descriptor 158: +==24487== +==24487== +==24487== Open file descriptor 155: +==24487== +==24487== +==24487== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMeshRemesh_valgrind.txt +==24487== +==24487== +==24487== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24487== +==24487== +==24487== +==24487== HEAP SUMMARY: +==24487== in use at exit: 618,242 bytes in 8,238 blocks +==24487== total heap usage: 264,076 allocs, 255,838 frees, 1,353,001,987 bytes allocated +==24487== +==24487== LEAK SUMMARY: +==24487== definitely lost: 0 bytes in 0 blocks +==24487== indirectly lost: 0 bytes in 0 blocks +==24487== possibly lost: 0 bytes in 0 blocks +==24487== still reachable: 24 bytes in 2 blocks +==24487== suppressed: 618,218 bytes in 8,236 blocks +==24487== Reachable blocks (those to which a pointer was found) are not shown. +==24487== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24487== +==24487== For lists of detected and suppressed errors, rerun with: -s +==24487== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestMutableMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMutableMesh_valgrind.txt new file mode 100644 index 000000000..654813683 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMutableMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24486== Memcheck, a memory error detector +==24486== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24486== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24486== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableMesh -malloc_debug -malloc_dump -memory_info +==24486== Parent PID: 24057 +==24486== +==24486== +==24486== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24486== Open file descriptor 12: +==24486== at 0x6C9E07D: pipe (pipe.c:29) +==24486== by 0x100CC07D: ??? +==24486== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24486== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24486== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24486== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24486== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24486== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24486== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24486== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24486== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24486== by 0x12C225: main (TestMutableMesh.cpp:19) +==24486== +==24486== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24486== at 0x6CA2A1C: __open_nocancel (open64_nocancel.c:39) +==24486== by 0x6C26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24486== by 0x659D822: ??? +==24486== by 0x659D96F: ??? +==24486== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24486== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24486== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24486== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24486== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24486== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24486== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24486== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24486== by 0x1333C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24486== by 0x12DDFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24486== by 0x13101C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24486== by 0x130EBC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24486== by 0x131553: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24486== by 0x12C225: main (TestMutableMesh.cpp:19) +==24486== +==24486== Open file descriptor 158: +==24486== +==24486== +==24486== Open file descriptor 155: +==24486== +==24486== +==24486== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableMesh_valgrind.txt +==24486== +==24486== +==24486== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24486== +==24486== +==24486== +==24486== HEAP SUMMARY: +==24486== in use at exit: 618,242 bytes in 8,238 blocks +==24486== total heap usage: 710,941 allocs, 702,703 frees, 1,368,555,548 bytes allocated +==24486== +==24486== LEAK SUMMARY: +==24486== definitely lost: 0 bytes in 0 blocks +==24486== indirectly lost: 0 bytes in 0 blocks +==24486== possibly lost: 0 bytes in 0 blocks +==24486== still reachable: 24 bytes in 2 blocks +==24486== suppressed: 618,218 bytes in 8,236 blocks +==24486== Reachable blocks (those to which a pointer was found) are not shown. +==24486== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24486== +==24486== For lists of detected and suppressed errors, rerun with: -s +==24486== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt new file mode 100644 index 000000000..d0e008b96 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt @@ -0,0 +1,73 @@ +==26196== Memcheck, a memory error detector +==26196== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26196== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26196== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMutableVertexMeshOperationsWithPopulationSrn -malloc_debug -malloc_dump -memory_info +==26196== Parent PID: 24057 +==26196== +==26196== +==26196== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26196== Open file descriptor 12: +==26196== at 0x10CB807D: pipe (pipe.c:29) +==26196== by 0x196B407D: ??? +==26196== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26196== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26196== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26196== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26196== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26196== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26196== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26196== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26196== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26196== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26196== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26196== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26196== +==26196== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26196== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==26196== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26196== by 0x104C2822: ??? +==26196== by 0x104C296F: ??? +==26196== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26196== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26196== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26196== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26196== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26196== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26196== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26196== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26196== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26196== by 0x12FA43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26196== by 0x12AAD3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26196== by 0x12D2E4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26196== by 0x12D1E0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26196== by 0x12D7F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26196== by 0x1292D5: main (TestMutableVertexMeshOperationsWithPopulationSrn.cpp:18) +==26196== +==26196== Open file descriptor 158: +==26196== +==26196== +==26196== Open file descriptor 155: +==26196== +==26196== +==26196== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshOperationsWithPopulationSrn_valgrind.txt +==26196== +==26196== +==26196== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26196== +==26196== +==26196== +==26196== HEAP SUMMARY: +==26196== in use at exit: 618,370 bytes in 8,239 blocks +==26196== total heap usage: 60,807 allocs, 52,568 frees, 1,339,311,723 bytes allocated +==26196== +==26196== LEAK SUMMARY: +==26196== definitely lost: 0 bytes in 0 blocks +==26196== indirectly lost: 0 bytes in 0 blocks +==26196== possibly lost: 0 bytes in 0 blocks +==26196== still reachable: 56 bytes in 3 blocks +==26196== suppressed: 618,314 bytes in 8,236 blocks +==26196== Reachable blocks (those to which a pointer was found) are not shown. +==26196== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26196== +==26196== For lists of detected and suppressed errors, rerun with: -s +==26196== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMutableVertexMeshReMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMutableVertexMeshReMesh_valgrind.txt new file mode 100644 index 000000000..155bb4232 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMutableVertexMeshReMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24740== Memcheck, a memory error detector +==24740== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24740== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24740== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshReMesh -malloc_debug -malloc_dump -memory_info +==24740== Parent PID: 24057 +==24740== +==24740== +==24740== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24740== Open file descriptor 12: +==24740== at 0x815307D: pipe (pipe.c:29) +==24740== by 0x100CC07D: ??? +==24740== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24740== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24740== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24740== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24740== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24740== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24740== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24740== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24740== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24740== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24740== +==24740== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24740== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24740== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24740== by 0x659D822: ??? +==24740== by 0x659D96F: ??? +==24740== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24740== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24740== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24740== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24740== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24740== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24740== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24740== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24740== by 0x1B0C07: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24740== by 0x1A87FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24740== by 0x1AC684: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24740== by 0x1AC524: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24740== by 0x1ACBBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24740== by 0x1A6C25: main (TestMutableVertexMeshReMesh.cpp:19) +==24740== +==24740== Open file descriptor 158: +==24740== +==24740== +==24740== Open file descriptor 155: +==24740== +==24740== +==24740== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshReMesh_valgrind.txt +==24740== +==24740== +==24740== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24740== +==24740== +==24740== +==24740== HEAP SUMMARY: +==24740== in use at exit: 620,794 bytes in 8,239 blocks +==24740== total heap usage: 81,708 allocs, 73,469 frees, 1,340,048,966 bytes allocated +==24740== +==24740== LEAK SUMMARY: +==24740== definitely lost: 0 bytes in 0 blocks +==24740== indirectly lost: 0 bytes in 0 blocks +==24740== possibly lost: 0 bytes in 0 blocks +==24740== still reachable: 2,576 bytes in 3 blocks +==24740== suppressed: 618,218 bytes in 8,236 blocks +==24740== Reachable blocks (those to which a pointer was found) are not shown. +==24740== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24740== +==24740== For lists of detected and suppressed errors, rerun with: -s +==24740== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestMutableVertexMeshRosetteMethods_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMutableVertexMeshRosetteMethods_valgrind.txt new file mode 100644 index 000000000..e71c645bb --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMutableVertexMeshRosetteMethods_valgrind.txt @@ -0,0 +1,73 @@ +==24741== Memcheck, a memory error detector +==24741== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24741== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24741== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMeshRosetteMethods -malloc_debug -malloc_dump -memory_info +==24741== Parent PID: 24057 +==24741== +==24741== +==24741== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24741== Open file descriptor 12: +==24741== at 0x823C07D: pipe (pipe.c:29) +==24741== by 0x100CC07D: ??? +==24741== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24741== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24741== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24741== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24741== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24741== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24741== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24741== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24741== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24741== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24741== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24741== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24741== +==24741== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24741== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24741== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24741== by 0x659D822: ??? +==24741== by 0x659D96F: ??? +==24741== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24741== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24741== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24741== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24741== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24741== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24741== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24741== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24741== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24741== by 0x122CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24741== by 0x11DCDD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24741== by 0x120960: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24741== by 0x120800: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24741== by 0x120E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24741== by 0x11C105: main (TestMutableVertexMeshRosetteMethods.cpp:19) +==24741== +==24741== Open file descriptor 158: +==24741== +==24741== +==24741== Open file descriptor 155: +==24741== +==24741== +==24741== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMeshRosetteMethods_valgrind.txt +==24741== +==24741== +==24741== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24741== +==24741== +==24741== +==24741== HEAP SUMMARY: +==24741== in use at exit: 620,794 bytes in 8,239 blocks +==24741== total heap usage: 53,312 allocs, 45,073 frees, 1,338,842,563 bytes allocated +==24741== +==24741== LEAK SUMMARY: +==24741== definitely lost: 0 bytes in 0 blocks +==24741== indirectly lost: 0 bytes in 0 blocks +==24741== possibly lost: 0 bytes in 0 blocks +==24741== still reachable: 2,576 bytes in 3 blocks +==24741== suppressed: 618,218 bytes in 8,236 blocks +==24741== Reachable blocks (those to which a pointer was found) are not shown. +==24741== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24741== +==24741== For lists of detected and suppressed errors, rerun with: -s +==24741== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestMutableVertexMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestMutableVertexMesh_valgrind.txt new file mode 100644 index 000000000..6d188f177 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestMutableVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24727== Memcheck, a memory error detector +==24727== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24727== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24727== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMutableVertexMesh -malloc_debug -malloc_dump -memory_info +==24727== Parent PID: 24057 +==24727== +==24727== +==24727== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24727== Open file descriptor 12: +==24727== at 0x815307D: pipe (pipe.c:29) +==24727== by 0x100CC07D: ??? +==24727== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24727== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24727== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24727== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24727== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24727== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24727== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24727== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24727== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24727== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24727== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24727== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24727== +==24727== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24727== at 0x8157A1C: __open_nocancel (open64_nocancel.c:39) +==24727== by 0x80DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24727== by 0x659D822: ??? +==24727== by 0x659D96F: ??? +==24727== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24727== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24727== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24727== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24727== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24727== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24727== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24727== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24727== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24727== by 0x1B5143: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24727== by 0x1AE9BD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24727== by 0x1B27F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24727== by 0x1B2696: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24727== by 0x1B2D2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24727== by 0x1ACDE5: main (TestMutableVertexMesh.cpp:19) +==24727== +==24727== Open file descriptor 158: +==24727== +==24727== +==24727== Open file descriptor 155: +==24727== +==24727== +==24727== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMutableVertexMesh_valgrind.txt +==24727== +==24727== +==24727== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24727== +==24727== +==24727== +==24727== HEAP SUMMARY: +==24727== in use at exit: 620,794 bytes in 8,239 blocks +==24727== total heap usage: 58,722 allocs, 50,483 frees, 1,339,663,613 bytes allocated +==24727== +==24727== LEAK SUMMARY: +==24727== definitely lost: 0 bytes in 0 blocks +==24727== indirectly lost: 0 bytes in 0 blocks +==24727== possibly lost: 0 bytes in 0 blocks +==24727== still reachable: 2,576 bytes in 3 blocks +==24727== suppressed: 618,218 bytes in 8,236 blocks +==24727== Reachable blocks (those to which a pointer was found) are not shown. +==24727== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24727== +==24727== For lists of detected and suppressed errors, rerun with: -s +==24727== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestNeumannStimulus_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNeumannStimulus_valgrind.txt new file mode 100644 index 000000000..78711d858 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNeumannStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43967== Memcheck, a memory error detector +==43967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNeumannStimulus -malloc_debug -malloc_dump -memory_info +==43967== Parent PID: 24057 +==43967== +==43967== +==43967== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43967== Open file descriptor 12: +==43967== at 0xAB8707D: pipe (pipe.c:29) +==43967== by 0x1432F07D: ??? +==43967== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43967== by 0xC282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43967== by 0xC21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43967== by 0xAF10D38: PetscInitialize (pinit.c:924) +==43967== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43967== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43967== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43967== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43967== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43967== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43967== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43967== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43967== +==43967== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43967== at 0xAB8BA1C: __open_nocancel (open64_nocancel.c:39) +==43967== by 0xAB0FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43967== by 0xA4AE822: ??? +==43967== by 0xA4AE96F: ??? +==43967== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43967== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43967== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43967== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43967== by 0xC282418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43967== by 0xC21BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43967== by 0xAF10D38: PetscInitialize (pinit.c:924) +==43967== by 0xA46E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43967== by 0xA46E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43967== by 0x12243C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43967== by 0x11D413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43967== by 0x11F854: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43967== by 0x11F750: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43967== by 0x11FD63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43967== by 0x11BC15: main (TestNeumannStimulus.cpp:18) +==43967== +==43967== Open file descriptor 158: +==43967== +==43967== +==43967== Open file descriptor 155: +==43967== +==43967== +==43967== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNeumannStimulus_valgrind.txt +==43967== +==43967== +==43967== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43967== +==43967== +==43967== +==43967== HEAP SUMMARY: +==43967== in use at exit: 618,834 bytes in 8,248 blocks +==43967== total heap usage: 100,655 allocs, 92,407 frees, 1,350,844,278 bytes allocated +==43967== +==43967== LEAK SUMMARY: +==43967== definitely lost: 0 bytes in 0 blocks +==43967== indirectly lost: 0 bytes in 0 blocks +==43967== possibly lost: 0 bytes in 0 blocks +==43967== still reachable: 24 bytes in 2 blocks +==43967== suppressed: 618,810 bytes in 8,246 blocks +==43967== Reachable blocks (those to which a pointer was found) are not shown. +==43967== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43967== +==43967== For lists of detected and suppressed errors, rerun with: -s +==43967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestNhsModelWithBackwardSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNhsModelWithBackwardSolver_valgrind.txt new file mode 100644 index 000000000..cbd54cf2f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNhsModelWithBackwardSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43671== Memcheck, a memory error detector +==43671== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43671== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43671== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestNhsModelWithBackwardSolver -malloc_debug -malloc_dump -memory_info +==43671== Parent PID: 24057 +==43671== +==43671== +==43671== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43671== Open file descriptor 12: +==43671== at 0x87B107D: pipe (pipe.c:29) +==43671== by 0x1432F07D: ??? +==43671== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43671== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43671== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43671== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==43671== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43671== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43671== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43671== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43671== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43671== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43671== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43671== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43671== +==43671== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43671== at 0x87B5A1C: __open_nocancel (open64_nocancel.c:39) +==43671== by 0x8739BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43671== by 0x841F822: ??? +==43671== by 0x841F96F: ??? +==43671== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43671== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43671== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43671== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43671== by 0x9EAC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43671== by 0x9E45D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43671== by 0x8B3CD38: PetscInitialize (pinit.c:924) +==43671== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43671== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43671== by 0x118B18: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43671== by 0x114093: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43671== by 0x11647E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43671== by 0x116379: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43671== by 0x11698D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43671== by 0x112895: main (TestNhsModelWithBackwardSolver.cpp:18) +==43671== +==43671== Open file descriptor 158: +==43671== +==43671== +==43671== Open file descriptor 155: +==43671== +==43671== +==43671== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNhsModelWithBackwardSolver_valgrind.txt +==43671== +==43671== +==43671== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43671== +==43671== +==43671== +==43671== HEAP SUMMARY: +==43671== in use at exit: 618,354 bytes in 8,238 blocks +==43671== total heap usage: 49,065 allocs, 40,827 frees, 1,338,540,095 bytes allocated +==43671== +==43671== LEAK SUMMARY: +==43671== definitely lost: 0 bytes in 0 blocks +==43671== indirectly lost: 0 bytes in 0 blocks +==43671== possibly lost: 0 bytes in 0 blocks +==43671== still reachable: 24 bytes in 2 blocks +==43671== suppressed: 618,330 bytes in 8,236 blocks +==43671== Reachable blocks (those to which a pointer was found) are not shown. +==43671== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43671== +==43671== For lists of detected and suppressed errors, rerun with: -s +==43671== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestNodeAttributes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNodeAttributes_valgrind.txt new file mode 100644 index 000000000..2a4053af0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNodeAttributes_valgrind.txt @@ -0,0 +1,73 @@ +==24507== Memcheck, a memory error detector +==24507== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24507== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24507== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodeAttributes -malloc_debug -malloc_dump -memory_info +==24507== Parent PID: 24057 +==24507== +==24507== +==24507== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24507== Open file descriptor 12: +==24507== at 0x695907D: pipe (pipe.c:29) +==24507== by 0x100CC07D: ??? +==24507== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24507== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24507== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24507== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24507== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24507== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24507== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24507== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24507== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24507== by 0x132445: main (TestNodeAttributes.cpp:19) +==24507== +==24507== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24507== at 0x695DA1C: __open_nocancel (open64_nocancel.c:39) +==24507== by 0x68E1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24507== by 0x659D822: ??? +==24507== by 0x659D96F: ??? +==24507== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24507== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24507== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24507== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24507== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24507== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24507== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24507== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24507== by 0x1396D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24507== by 0x134029: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24507== by 0x136E5A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24507== by 0x136CFA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24507== by 0x137391: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24507== by 0x132445: main (TestNodeAttributes.cpp:19) +==24507== +==24507== Open file descriptor 158: +==24507== +==24507== +==24507== Open file descriptor 155: +==24507== +==24507== +==24507== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeAttributes_valgrind.txt +==24507== +==24507== +==24507== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24507== +==24507== +==24507== +==24507== HEAP SUMMARY: +==24507== in use at exit: 618,242 bytes in 8,238 blocks +==24507== total heap usage: 47,487 allocs, 39,249 frees, 1,338,443,391 bytes allocated +==24507== +==24507== LEAK SUMMARY: +==24507== definitely lost: 0 bytes in 0 blocks +==24507== indirectly lost: 0 bytes in 0 blocks +==24507== possibly lost: 0 bytes in 0 blocks +==24507== still reachable: 24 bytes in 2 blocks +==24507== suppressed: 618,218 bytes in 8,236 blocks +==24507== Reachable blocks (those to which a pointer was found) are not shown. +==24507== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24507== +==24507== For lists of detected and suppressed errors, rerun with: -s +==24507== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..48334390a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26212== Memcheck, a memory error detector +==26212== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26212== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26212== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26212== Parent PID: 24057 +==26212== +==26212== +==26212== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26212== Open file descriptor 12: +==26212== at 0xF8E807D: pipe (pipe.c:29) +==26212== by 0x196B407D: ??? +==26212== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26212== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26212== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26212== by 0x10218D38: PetscInitialize (pinit.c:924) +==26212== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26212== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26212== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26212== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26212== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26212== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26212== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26212== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26212== +==26212== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26212== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26212== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26212== by 0xF144822: ??? +==26212== by 0xF14496F: ??? +==26212== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26212== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26212== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26212== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26212== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26212== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26212== by 0x10218D38: PetscInitialize (pinit.c:924) +==26212== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26212== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26212== by 0x13F4FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26212== by 0x13824D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26212== by 0x13AF0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26212== by 0x13ADAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26212== by 0x13B441: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26212== by 0x136675: main (TestNodeBasedCellPopulationParallelMethods.cpp:19) +==26212== +==26212== Open file descriptor 158: +==26212== +==26212== +==26212== Open file descriptor 155: +==26212== +==26212== +==26212== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationParallelMethods_valgrind.txt +==26212== +==26212== +==26212== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26212== +==26212== +==26212== +==26212== HEAP SUMMARY: +==26212== in use at exit: 618,370 bytes in 8,239 blocks +==26212== total heap usage: 60,289 allocs, 52,050 frees, 1,342,417,278 bytes allocated +==26212== +==26212== LEAK SUMMARY: +==26212== definitely lost: 0 bytes in 0 blocks +==26212== indirectly lost: 0 bytes in 0 blocks +==26212== possibly lost: 0 bytes in 0 blocks +==26212== still reachable: 56 bytes in 3 blocks +==26212== suppressed: 618,314 bytes in 8,236 blocks +==26212== Reachable blocks (those to which a pointer was found) are not shown. +==26212== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26212== +==26212== For lists of detected and suppressed errors, rerun with: -s +==26212== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt new file mode 100644 index 000000000..023d12d58 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt @@ -0,0 +1,73 @@ +==26214== Memcheck, a memory error detector +==26214== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26214== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26214== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info +==26214== Parent PID: 24057 +==26214== +==26214== +==26214== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26214== Open file descriptor 12: +==26214== at 0xF84307D: pipe (pipe.c:29) +==26214== by 0x196B407D: ??? +==26214== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26214== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26214== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26214== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26214== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26214== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26214== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26214== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26214== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26214== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26214== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26214== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26214== +==26214== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26214== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==26214== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26214== by 0xF144822: ??? +==26214== by 0xF14496F: ??? +==26214== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26214== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26214== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26214== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26214== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26214== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26214== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26214== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26214== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26214== by 0x2CC5B8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26214== by 0x2C3A9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26214== by 0x2C7EB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26214== by 0x2C7DB3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26214== by 0x2C83C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26214== by 0x2C2295: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) +==26214== +==26214== Open file descriptor 158: +==26214== +==26214== +==26214== Open file descriptor 155: +==26214== +==26214== +==26214== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt +==26214== +==26214== +==26214== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26214== +==26214== +==26214== +==26214== HEAP SUMMARY: +==26214== in use at exit: 618,370 bytes in 8,239 blocks +==26214== total heap usage: 57,007 allocs, 48,768 frees, 1,340,209,946 bytes allocated +==26214== +==26214== LEAK SUMMARY: +==26214== definitely lost: 0 bytes in 0 blocks +==26214== indirectly lost: 0 bytes in 0 blocks +==26214== possibly lost: 0 bytes in 0 blocks +==26214== still reachable: 56 bytes in 3 blocks +==26214== suppressed: 618,314 bytes in 8,236 blocks +==26214== Reachable blocks (those to which a pointer was found) are not shown. +==26214== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26214== +==26214== For lists of detected and suppressed errors, rerun with: -s +==26214== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationWithParticles_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationWithParticles_valgrind.txt new file mode 100644 index 000000000..36c97e544 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulationWithParticles_valgrind.txt @@ -0,0 +1,73 @@ +==26228== Memcheck, a memory error detector +==26228== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26228== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26228== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info +==26228== Parent PID: 24057 +==26228== +==26228== +==26228== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26228== Open file descriptor 12: +==26228== at 0xF92C07D: pipe (pipe.c:29) +==26228== by 0x196B407D: ??? +==26228== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26228== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0x10218D38: PetscInitialize (pinit.c:924) +==26228== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26228== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26228== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26228== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26228== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26228== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26228== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26228== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26228== +==26228== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26228== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26228== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26228== by 0xF144822: ??? +==26228== by 0xF14496F: ??? +==26228== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26228== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26228== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26228== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26228== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26228== by 0x10218D38: PetscInitialize (pinit.c:924) +==26228== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26228== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26228== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26228== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26228== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26228== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26228== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26228== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) +==26228== +==26228== Open file descriptor 158: +==26228== +==26228== +==26228== Open file descriptor 155: +==26228== +==26228== +==26228== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt +==26228== +==26228== +==26228== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26228== +==26228== +==26228== +==26228== HEAP SUMMARY: +==26228== in use at exit: 618,370 bytes in 8,239 blocks +==26228== total heap usage: 103,791 allocs, 95,552 frees, 1,346,202,965 bytes allocated +==26228== +==26228== LEAK SUMMARY: +==26228== definitely lost: 0 bytes in 0 blocks +==26228== indirectly lost: 0 bytes in 0 blocks +==26228== possibly lost: 0 bytes in 0 blocks +==26228== still reachable: 56 bytes in 3 blocks +==26228== suppressed: 618,314 bytes in 8,236 blocks +==26228== Reachable blocks (those to which a pointer was found) are not shown. +==26228== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26228== +==26228== For lists of detected and suppressed errors, rerun with: -s +==26228== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..885f72329 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26203== Memcheck, a memory error detector +==26203== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26203== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26203== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26203== Parent PID: 24057 +==26203== +==26203== +==26203== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26203== Open file descriptor 12: +==26203== at 0xF8D407D: pipe (pipe.c:29) +==26203== by 0x196B407D: ??? +==26203== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26203== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26203== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26203== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26203== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26203== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26203== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26203== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26203== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26203== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26203== +==26203== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26203== at 0xF8D8A1C: __open_nocancel (open64_nocancel.c:39) +==26203== by 0xF85CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26203== by 0xF1D3822: ??? +==26203== by 0xF1D396F: ??? +==26203== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26203== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26203== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26203== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26203== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26203== by 0x1012FD38: PetscInitialize (pinit.c:924) +==26203== by 0xF1931D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26203== by 0xF193227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26203== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26203== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26203== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26203== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26203== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26203== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) +==26203== +==26203== Open file descriptor 158: +==26203== +==26203== +==26203== Open file descriptor 155: +==26203== +==26203== +==26203== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt +==26203== +==26203== +==26203== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26203== +==26203== +==26203== +==26203== HEAP SUMMARY: +==26203== in use at exit: 618,297 bytes in 8,235 blocks +==26203== total heap usage: 20,193,223 allocs, 20,184,988 frees, 2,562,972,031 bytes allocated +==26203== +==26203== LEAK SUMMARY: +==26203== definitely lost: 0 bytes in 0 blocks +==26203== indirectly lost: 0 bytes in 0 blocks +==26203== possibly lost: 0 bytes in 0 blocks +==26203== still reachable: 56 bytes in 3 blocks +==26203== suppressed: 618,241 bytes in 8,232 blocks +==26203== Reachable blocks (those to which a pointer was found) are not shown. +==26203== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26203== +==26203== For lists of detected and suppressed errors, rerun with: -s +==26203== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestNode_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNode_valgrind.txt new file mode 100644 index 000000000..2bbeaad5d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNode_valgrind.txt @@ -0,0 +1,73 @@ +==24499== Memcheck, a memory error detector +==24499== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24499== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24499== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNode -malloc_debug -malloc_dump -memory_info +==24499== Parent PID: 24057 +==24499== +==24499== +==24499== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24499== Open file descriptor 12: +==24499== at 0x6C9E07D: pipe (pipe.c:29) +==24499== by 0x100CC07D: ??? +==24499== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24499== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24499== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24499== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24499== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24499== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24499== by 0x13EF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24499== by 0x139569: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24499== by 0x13C67E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24499== by 0x13C51E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24499== by 0x13CBB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24499== by 0x137985: main (TestNode.cpp:19) +==24499== +==24499== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24499== at 0x6CA2A1C: __open_nocancel (open64_nocancel.c:39) +==24499== by 0x6C26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24499== by 0x659D822: ??? +==24499== by 0x659D96F: ??? +==24499== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24499== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24499== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24499== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24499== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24499== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24499== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24499== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24499== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24499== by 0x13EF3C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24499== by 0x139569: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24499== by 0x13C67E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24499== by 0x13C51E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24499== by 0x13CBB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24499== by 0x137985: main (TestNode.cpp:19) +==24499== +==24499== Open file descriptor 158: +==24499== +==24499== +==24499== Open file descriptor 155: +==24499== +==24499== +==24499== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNode_valgrind.txt +==24499== +==24499== +==24499== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24499== +==24499== +==24499== +==24499== HEAP SUMMARY: +==24499== in use at exit: 618,242 bytes in 8,238 blocks +==24499== total heap usage: 47,492 allocs, 39,254 frees, 1,338,426,859 bytes allocated +==24499== +==24499== LEAK SUMMARY: +==24499== definitely lost: 0 bytes in 0 blocks +==24499== indirectly lost: 0 bytes in 0 blocks +==24499== possibly lost: 0 bytes in 0 blocks +==24499== still reachable: 24 bytes in 2 blocks +==24499== suppressed: 618,218 bytes in 8,236 blocks +==24499== Reachable blocks (those to which a pointer was found) are not shown. +==24499== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24499== +==24499== For lists of detected and suppressed errors, rerun with: -s +==24499== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestNodesOnlyMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..11b33e629 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24508== Memcheck, a memory error detector +==24508== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24508== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24508== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24508== Parent PID: 24057 +==24508== +==24508== +==24508== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24508== Open file descriptor 12: +==24508== at 0x6D8507D: pipe (pipe.c:29) +==24508== by 0x100CC07D: ??? +==24508== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24508== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24508== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24508== by 0x701FD38: PetscInitialize (pinit.c:924) +==24508== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24508== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24508== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24508== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24508== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24508== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24508== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24508== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24508== +==24508== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24508== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24508== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24508== by 0x659D822: ??? +==24508== by 0x659D96F: ??? +==24508== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24508== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24508== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24508== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24508== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24508== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24508== by 0x701FD38: PetscInitialize (pinit.c:924) +==24508== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24508== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24508== by 0x143026: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24508== by 0x13D7DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24508== by 0x14093C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24508== by 0x1407DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24508== by 0x140E73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24508== by 0x13BC05: main (TestNodesOnlyMesh.cpp:19) +==24508== +==24508== Open file descriptor 158: +==24508== +==24508== +==24508== Open file descriptor 155: +==24508== +==24508== +==24508== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodesOnlyMesh_valgrind.txt +==24508== +==24508== +==24508== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24508== +==24508== +==24508== +==24508== HEAP SUMMARY: +==24508== in use at exit: 618,242 bytes in 8,238 blocks +==24508== total heap usage: 359,550 allocs, 351,312 frees, 1,358,355,518 bytes allocated +==24508== +==24508== LEAK SUMMARY: +==24508== definitely lost: 0 bytes in 0 blocks +==24508== indirectly lost: 0 bytes in 0 blocks +==24508== possibly lost: 0 bytes in 0 blocks +==24508== still reachable: 24 bytes in 2 blocks +==24508== suppressed: 618,218 bytes in 8,236 blocks +==24508== Reachable blocks (those to which a pointer was found) are not shown. +==24508== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24508== +==24508== For lists of detected and suppressed errors, rerun with: -s +==24508== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestNonCachedTetrahedralMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNonCachedTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..315f86f6d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNonCachedTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24515== Memcheck, a memory error detector +==24515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24515== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestNonCachedTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24515== Parent PID: 24057 +==24515== +==24515== +==24515== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24515== Open file descriptor 12: +==24515== at 0x6C9E07D: pipe (pipe.c:29) +==24515== by 0x100CC07D: ??? +==24515== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24515== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24515== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24515== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24515== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24515== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24515== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24515== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24515== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24515== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24515== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24515== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24515== +==24515== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24515== at 0x6CA2A1C: __open_nocancel (open64_nocancel.c:39) +==24515== by 0x6C26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24515== by 0x659D822: ??? +==24515== by 0x659D96F: ??? +==24515== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24515== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24515== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24515== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24515== by 0x82A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24515== by 0x8241D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24515== by 0x6F38D38: PetscInitialize (pinit.c:924) +==24515== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24515== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24515== by 0x121954: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24515== by 0x11CD9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24515== by 0x11F7E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24515== by 0x11F682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24515== by 0x11FD19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24515== by 0x11B1C5: main (TestNonCachedTetrahedralMesh.cpp:19) +==24515== +==24515== Open file descriptor 158: +==24515== +==24515== +==24515== Open file descriptor 155: +==24515== +==24515== +==24515== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonCachedTetrahedralMesh_valgrind.txt +==24515== +==24515== +==24515== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24515== +==24515== +==24515== +==24515== HEAP SUMMARY: +==24515== in use at exit: 618,169 bytes in 8,234 blocks +==24515== total heap usage: 16,013,254 allocs, 16,005,020 frees, 3,441,282,539 bytes allocated +==24515== +==24515== LEAK SUMMARY: +==24515== definitely lost: 0 bytes in 0 blocks +==24515== indirectly lost: 0 bytes in 0 blocks +==24515== possibly lost: 0 bytes in 0 blocks +==24515== still reachable: 24 bytes in 2 blocks +==24515== suppressed: 618,145 bytes in 8,232 blocks +==24515== Reachable blocks (those to which a pointer was found) are not shown. +==24515== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24515== +==24515== For lists of detected and suppressed errors, rerun with: -s +==24515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestNonlinearElasticityTools_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNonlinearElasticityTools_valgrind.txt new file mode 100644 index 000000000..9caa490f7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNonlinearElasticityTools_valgrind.txt @@ -0,0 +1,73 @@ +==25388== Memcheck, a memory error detector +==25388== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25388== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25388== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info +==25388== Parent PID: 24057 +==25388== +==25388== +==25388== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25388== Open file descriptor 12: +==25388== at 0x6DDC07D: pipe (pipe.c:29) +==25388== by 0x106DF07D: ??? +==25388== by 0xBFF44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25388== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0x7413D38: PetscInitialize (pinit.c:924) +==25388== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25388== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25388== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25388== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25388== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25388== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25388== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25388== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25388== +==25388== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25388== at 0x6DE0A1C: __open_nocancel (open64_nocancel.c:39) +==25388== by 0x6D64BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25388== by 0x671F822: ??? +==25388== by 0x671F96F: ??? +==25388== by 0xC0996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25388== by 0xC099938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25388== by 0xC04F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25388== by 0xBFF42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25388== by 0x88AE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0x8847D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25388== by 0x7413D38: PetscInitialize (pinit.c:924) +==25388== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25388== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25388== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25388== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25388== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25388== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25388== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25388== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) +==25388== +==25388== Open file descriptor 158: +==25388== +==25388== +==25388== Open file descriptor 155: +==25388== +==25388== +==25388== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt +==25388== +==25388== +==25388== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25388== +==25388== +==25388== +==25388== HEAP SUMMARY: +==25388== in use at exit: 618,290 bytes in 8,238 blocks +==25388== total heap usage: 57,772 allocs, 49,534 frees, 1,339,460,735 bytes allocated +==25388== +==25388== LEAK SUMMARY: +==25388== definitely lost: 0 bytes in 0 blocks +==25388== indirectly lost: 0 bytes in 0 blocks +==25388== possibly lost: 0 bytes in 0 blocks +==25388== still reachable: 24 bytes in 2 blocks +==25388== suppressed: 618,266 bytes in 8,236 blocks +==25388== Reachable blocks (those to which a pointer was found) are not shown. +==25388== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25388== +==25388== For lists of detected and suppressed errors, rerun with: -s +==25388== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestNonlinearSolvers_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNonlinearSolvers_valgrind.txt new file mode 100644 index 000000000..52394c80a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNonlinearSolvers_valgrind.txt @@ -0,0 +1,73 @@ +==24370== Memcheck, a memory error detector +==24370== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24370== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24370== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info +==24370== Parent PID: 24057 +==24370== +==24370== +==24370== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24370== Open file descriptor 12: +==24370== at 0x60C107D: pipe (pipe.c:29) +==24370== by 0xAF3907D: ??? +==24370== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24370== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24370== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24370== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24370== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24370== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24370== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24370== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24370== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24370== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24370== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24370== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24370== +==24370== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24370== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24370== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24370== by 0x5D47822: ??? +==24370== by 0x5D4796F: ??? +==24370== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24370== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24370== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24370== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24370== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24370== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24370== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24370== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24370== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24370== by 0x1143C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24370== by 0x10FB69: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24370== by 0x1123C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24370== by 0x112266: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24370== by 0x1128FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24370== by 0x10D915: main (TestNonlinearSolvers.cpp:19) +==24370== +==24370== Open file descriptor 158: +==24370== +==24370== +==24370== Open file descriptor 155: +==24370== +==24370== +==24370== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearSolvers_valgrind.txt +==24370== +==24370== +==24370== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24370== +==24370== +==24370== +==24370== HEAP SUMMARY: +==24370== in use at exit: 617,890 bytes in 8,238 blocks +==24370== total heap usage: 101,428 allocs, 93,190 frees, 1,348,558,453 bytes allocated +==24370== +==24370== LEAK SUMMARY: +==24370== definitely lost: 0 bytes in 0 blocks +==24370== indirectly lost: 0 bytes in 0 blocks +==24370== possibly lost: 0 bytes in 0 blocks +==24370== still reachable: 24 bytes in 2 blocks +==24370== suppressed: 617,866 bytes in 8,236 blocks +==24370== Reachable blocks (those to which a pointer was found) are not shown. +==24370== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24370== +==24370== For lists of detected and suppressed errors, rerun with: -s +==24370== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestNormallyDistributedTargetAreaModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNormallyDistributedTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..72313894a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNormallyDistributedTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==26587== Memcheck, a memory error detector +==26587== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26587== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26587== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNormallyDistributedTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==26587== Parent PID: 24057 +==26587== +==26587== +==26587== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26587== Open file descriptor 12: +==26587== at 0x10CFA07D: pipe (pipe.c:29) +==26587== by 0x196B407D: ??? +==26587== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26587== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26587== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26587== by 0xF292D38: PetscInitialize (pinit.c:924) +==26587== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26587== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26587== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26587== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26587== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26587== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26587== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26587== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26587== +==26587== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26587== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26587== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26587== by 0xF144822: ??? +==26587== by 0xF14496F: ??? +==26587== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26587== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26587== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26587== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26587== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26587== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26587== by 0xF292D38: PetscInitialize (pinit.c:924) +==26587== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26587== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26587== by 0x139D83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26587== by 0x1324FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26587== by 0x1357FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26587== by 0x13569C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26587== by 0x135D33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26587== by 0x130925: main (TestNormallyDistributedTargetAreaModifier.cpp:19) +==26587== +==26587== Open file descriptor 158: +==26587== +==26587== +==26587== Open file descriptor 155: +==26587== +==26587== +==26587== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNormallyDistributedTargetAreaModifier_valgrind.txt +==26587== +==26587== +==26587== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26587== +==26587== +==26587== +==26587== HEAP SUMMARY: +==26587== in use at exit: 618,370 bytes in 8,239 blocks +==26587== total heap usage: 581,796 allocs, 573,557 frees, 1,435,425,868 bytes allocated +==26587== +==26587== LEAK SUMMARY: +==26587== definitely lost: 0 bytes in 0 blocks +==26587== indirectly lost: 0 bytes in 0 blocks +==26587== possibly lost: 0 bytes in 0 blocks +==26587== still reachable: 56 bytes in 3 blocks +==26587== suppressed: 618,314 bytes in 8,236 blocks +==26587== Reachable blocks (those to which a pointer was found) are not shown. +==26587== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26587== +==26587== For lists of detected and suppressed errors, rerun with: -s +==26587== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestNumericFileComparison_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNumericFileComparison_valgrind.txt new file mode 100644 index 000000000..f8953210a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNumericFileComparison_valgrind.txt @@ -0,0 +1,73 @@ +==24210== Memcheck, a memory error detector +==24210== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24210== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24210== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestNumericFileComparison -malloc_debug -malloc_dump -memory_info +==24210== Parent PID: 24057 +==24210== +==24210== +==24210== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24210== Open file descriptor 12: +==24210== at 0x4CB207D: pipe (pipe.c:29) +==24210== by 0xAEA507D: ??? +==24210== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24210== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24210== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24210== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24210== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24210== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24210== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24210== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24210== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24210== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24210== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24210== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24210== +==24210== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24210== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24210== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24210== by 0x493A822: ??? +==24210== by 0x493A96F: ??? +==24210== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24210== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24210== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24210== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24210== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24210== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24210== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24210== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24210== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24210== by 0x115A5C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24210== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24210== by 0x112A1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24210== by 0x112915: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24210== by 0x112F29: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24210== by 0x10EA95: main (TestNumericFileComparison.cpp:18) +==24210== +==24210== Open file descriptor 158: +==24210== +==24210== +==24210== Open file descriptor 155: +==24210== +==24210== +==24210== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericFileComparison_valgrind.txt +==24210== +==24210== +==24210== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24210== +==24210== +==24210== +==24210== HEAP SUMMARY: +==24210== in use at exit: 617,874 bytes in 8,238 blocks +==24210== total heap usage: 45,728 allocs, 37,490 frees, 1,338,467,106 bytes allocated +==24210== +==24210== LEAK SUMMARY: +==24210== definitely lost: 0 bytes in 0 blocks +==24210== indirectly lost: 0 bytes in 0 blocks +==24210== possibly lost: 0 bytes in 0 blocks +==24210== still reachable: 24 bytes in 2 blocks +==24210== suppressed: 617,850 bytes in 8,236 blocks +==24210== Reachable blocks (those to which a pointer was found) are not shown. +==24210== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24210== +==24210== For lists of detected and suppressed errors, rerun with: -s +==24210== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestNumericalMethods_valgrind.txt b/log-files/2025-02-12_21-17-58/TestNumericalMethods_valgrind.txt new file mode 100644 index 000000000..8d247c725 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestNumericalMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26472== Memcheck, a memory error detector +==26472== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26472== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26472== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNumericalMethods -malloc_debug -malloc_dump -memory_info +==26472== Parent PID: 24057 +==26472== +==26472== +==26472== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26472== Open file descriptor 12: +==26472== at 0xF8E807D: pipe (pipe.c:29) +==26472== by 0x196B407D: ??? +==26472== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26472== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26472== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26472== by 0x10218D38: PetscInitialize (pinit.c:924) +==26472== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26472== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26472== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26472== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26472== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26472== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26472== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26472== by 0x133475: main (TestNumericalMethods.cpp:19) +==26472== +==26472== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26472== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26472== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26472== by 0xF144822: ??? +==26472== by 0xF14496F: ??? +==26472== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26472== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26472== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26472== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26472== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26472== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26472== by 0x10218D38: PetscInitialize (pinit.c:924) +==26472== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26472== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26472== by 0x13A648: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26472== by 0x13504D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26472== by 0x137DD4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26472== by 0x137C74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26472== by 0x13830B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26472== by 0x133475: main (TestNumericalMethods.cpp:19) +==26472== +==26472== Open file descriptor 158: +==26472== +==26472== +==26472== Open file descriptor 155: +==26472== +==26472== +==26472== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNumericalMethods_valgrind.txt +==26472== +==26472== +==26472== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26472== +==26472== +==26472== +==26472== HEAP SUMMARY: +==26472== in use at exit: 618,370 bytes in 8,239 blocks +==26472== total heap usage: 69,198 allocs, 60,959 frees, 1,341,833,650 bytes allocated +==26472== +==26472== LEAK SUMMARY: +==26472== definitely lost: 0 bytes in 0 blocks +==26472== indirectly lost: 0 bytes in 0 blocks +==26472== possibly lost: 0 bytes in 0 blocks +==26472== still reachable: 56 bytes in 3 blocks +==26472== suppressed: 618,314 bytes in 8,236 blocks +==26472== Reachable blocks (those to which a pointer was found) are not shown. +==26472== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26472== +==26472== For lists of detected and suppressed errors, rerun with: -s +==26472== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestObjectCommunicator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestObjectCommunicator_valgrind.txt new file mode 100644 index 000000000..89ba03b36 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestObjectCommunicator_valgrind.txt @@ -0,0 +1,73 @@ +==24211== Memcheck, a memory error detector +==24211== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24211== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24211== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestObjectCommunicator -malloc_debug -malloc_dump -memory_info +==24211== Parent PID: 24057 +==24211== +==24211== +==24211== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24211== Open file descriptor 12: +==24211== at 0x61AB07D: pipe (pipe.c:29) +==24211== by 0xAEA507D: ??? +==24211== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24211== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24211== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24211== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24211== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24211== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24211== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24211== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24211== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24211== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24211== +==24211== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24211== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24211== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24211== by 0x493A822: ??? +==24211== by 0x493A96F: ??? +==24211== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24211== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24211== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24211== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24211== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24211== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24211== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24211== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24211== by 0x1221BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24211== by 0x11C051: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24211== by 0x11F5CC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24211== by 0x11F46C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24211== by 0x11FB03: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24211== by 0x11A325: main (TestObjectCommunicator.cpp:19) +==24211== +==24211== Open file descriptor 158: +==24211== +==24211== +==24211== Open file descriptor 155: +==24211== +==24211== +==24211== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObjectCommunicator_valgrind.txt +==24211== +==24211== +==24211== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24211== +==24211== +==24211== +==24211== HEAP SUMMARY: +==24211== in use at exit: 617,874 bytes in 8,238 blocks +==24211== total heap usage: 44,948 allocs, 36,710 frees, 1,338,162,020 bytes allocated +==24211== +==24211== LEAK SUMMARY: +==24211== definitely lost: 0 bytes in 0 blocks +==24211== indirectly lost: 0 bytes in 0 blocks +==24211== possibly lost: 0 bytes in 0 blocks +==24211== still reachable: 24 bytes in 2 blocks +==24211== suppressed: 617,850 bytes in 8,236 blocks +==24211== Reachable blocks (those to which a pointer was found) are not shown. +==24211== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24211== +==24211== For lists of detected and suppressed errors, rerun with: -s +==24211== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestObsoleteBoxCollection_valgrind.txt b/log-files/2025-02-12_21-17-58/TestObsoleteBoxCollection_valgrind.txt new file mode 100644 index 000000000..6fe57f771 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestObsoleteBoxCollection_valgrind.txt @@ -0,0 +1,73 @@ +==24695== Memcheck, a memory error detector +==24695== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24695== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24695== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestObsoleteBoxCollection -malloc_debug -malloc_dump -memory_info +==24695== Parent PID: 24057 +==24695== +==24695== +==24695== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24695== Open file descriptor 12: +==24695== at 0x6D4307D: pipe (pipe.c:29) +==24695== by 0x100CC07D: ??? +==24695== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24695== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24695== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24695== by 0x701FD38: PetscInitialize (pinit.c:924) +==24695== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24695== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24695== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24695== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24695== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24695== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24695== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24695== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24695== +==24695== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24695== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24695== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24695== by 0x659D822: ??? +==24695== by 0x659D96F: ??? +==24695== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24695== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24695== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24695== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24695== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24695== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24695== by 0x701FD38: PetscInitialize (pinit.c:924) +==24695== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24695== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24695== by 0x153352: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24695== by 0x14DF8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24695== by 0x150FA0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24695== by 0x150E40: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24695== by 0x1514D7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24695== by 0x14C3B5: main (TestObsoleteBoxCollection.cpp:19) +==24695== +==24695== Open file descriptor 158: +==24695== +==24695== +==24695== Open file descriptor 155: +==24695== +==24695== +==24695== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestObsoleteBoxCollection_valgrind.txt +==24695== +==24695== +==24695== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24695== +==24695== +==24695== +==24695== HEAP SUMMARY: +==24695== in use at exit: 618,242 bytes in 8,238 blocks +==24695== total heap usage: 276,944 allocs, 268,706 frees, 1,447,218,144 bytes allocated +==24695== +==24695== LEAK SUMMARY: +==24695== definitely lost: 0 bytes in 0 blocks +==24695== indirectly lost: 0 bytes in 0 blocks +==24695== possibly lost: 0 bytes in 0 blocks +==24695== still reachable: 24 bytes in 2 blocks +==24695== suppressed: 618,218 bytes in 8,236 blocks +==24695== Reachable blocks (those to which a pointer was found) are not shown. +==24695== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24695== +==24695== For lists of detected and suppressed errors, rerun with: -s +==24695== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..65f37ae5f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40422== Memcheck, a memory error detector +==40422== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40422== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40422== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40422== Parent PID: 24057 +==40422== +==40422== +==40422== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40422== Open file descriptor 12: +==40422== at 0x10B9907D: pipe (pipe.c:29) +==40422== by 0x1B37607D: ??? +==40422== by 0x155194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40422== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0xF131D38: PetscInitialize (pinit.c:924) +==40422== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40422== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40422== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40422== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40422== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40422== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40422== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40422== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40422== +==40422== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40422== at 0x10B9DA1C: __open_nocancel (open64_nocancel.c:39) +==40422== by 0x10B21BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40422== by 0xEFE3822: ??? +==40422== by 0xEFE396F: ??? +==40422== by 0x155BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x155BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x15574922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40422== by 0x155192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40422== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40422== by 0xF131D38: PetscInitialize (pinit.c:924) +==40422== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40422== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40422== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40422== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40422== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40422== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40422== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40422== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) +==40422== +==40422== Open file descriptor 158: +==40422== +==40422== +==40422== Open file descriptor 155: +==40422== +==40422== +==40422== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt +==40422== +==40422== +==40422== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40422== +==40422== +==40422== +==40422== HEAP SUMMARY: +==40422== in use at exit: 618,450 bytes in 8,240 blocks +==40422== total heap usage: 862,015 allocs, 853,775 frees, 1,460,911,347 bytes allocated +==40422== +==40422== LEAK SUMMARY: +==40422== definitely lost: 0 bytes in 0 blocks +==40422== indirectly lost: 0 bytes in 0 blocks +==40422== possibly lost: 0 bytes in 0 blocks +==40422== still reachable: 120 bytes in 4 blocks +==40422== suppressed: 618,330 bytes in 8,236 blocks +==40422== Reachable blocks (those to which a pointer was found) are not shown. +==40422== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40422== +==40422== For lists of detected and suppressed errors, rerun with: -s +==40422== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestOdeBasedCellCycleModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOdeBasedCellCycleModels_valgrind.txt new file mode 100644 index 000000000..a72ff2eb8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOdeBasedCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25515== Memcheck, a memory error detector +==25515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25515== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedCellCycleModels -malloc_debug -malloc_dump -memory_info +==25515== Parent PID: 24057 +==25515== +==25515== +==25515== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25515== Open file descriptor 12: +==25515== at 0xEF9407D: pipe (pipe.c:29) +==25515== by 0x196B507D: ??? +==25515== by 0x13C594CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25515== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25515== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25515== by 0xD871D38: PetscInitialize (pinit.c:924) +==25515== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25515== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25515== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25515== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25515== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25515== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25515== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25515== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25515== +==25515== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25515== at 0xEF98A1C: __open_nocancel (open64_nocancel.c:39) +==25515== by 0xEF1CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25515== by 0xD723822: ??? +==25515== by 0xD72396F: ??? +==25515== by 0x13CFE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25515== by 0x13CFE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25515== by 0x13CB4922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25515== by 0x13C592DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25515== by 0xEBE1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25515== by 0xEB7AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25515== by 0xD871D38: PetscInitialize (pinit.c:924) +==25515== by 0xD6E31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25515== by 0xD6E3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25515== by 0x1361D7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25515== by 0x12EF6F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25515== by 0x131C2A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25515== by 0x131ACA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25515== by 0x132161: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25515== by 0x12B8A5: main (TestOdeBasedCellCycleModels.cpp:19) +==25515== +==25515== Open file descriptor 158: +==25515== +==25515== +==25515== Open file descriptor 155: +==25515== +==25515== +==25515== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModels_valgrind.txt +==25515== +==25515== +==25515== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25515== +==25515== +==25515== +==25515== HEAP SUMMARY: +==25515== in use at exit: 618,313 bytes in 8,236 blocks +==25515== total heap usage: 4,179,305 allocs, 4,171,069 frees, 1,770,076,394 bytes allocated +==25515== +==25515== LEAK SUMMARY: +==25515== definitely lost: 0 bytes in 0 blocks +==25515== indirectly lost: 0 bytes in 0 blocks +==25515== possibly lost: 0 bytes in 0 blocks +==25515== still reachable: 72 bytes in 4 blocks +==25515== suppressed: 618,241 bytes in 8,232 blocks +==25515== Reachable blocks (those to which a pointer was found) are not shown. +==25515== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25515== +==25515== For lists of detected and suppressed errors, rerun with: -s +==25515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOdeBasedSrnModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOdeBasedSrnModels_valgrind.txt new file mode 100644 index 000000000..5dd8eacd0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOdeBasedSrnModels_valgrind.txt @@ -0,0 +1,73 @@ +==25523== Memcheck, a memory error detector +==25523== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25523== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25523== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeBasedSrnModels -malloc_debug -malloc_dump -memory_info +==25523== Parent PID: 24057 +==25523== +==25523== +==25523== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25523== Open file descriptor 12: +==25523== at 0xED5007D: pipe (pipe.c:29) +==25523== by 0x196B507D: ??? +==25523== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25523== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25523== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25523== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25523== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25523== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25523== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25523== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25523== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25523== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25523== +==25523== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25523== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25523== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25523== by 0xD4DF822: ??? +==25523== by 0xD4DF96F: ??? +==25523== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25523== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25523== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25523== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25523== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25523== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25523== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25523== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25523== by 0x12E3B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25523== by 0x1272FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25523== by 0x129E8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25523== by 0x129D2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25523== by 0x12A3C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25523== by 0x125725: main (TestOdeBasedSrnModels.cpp:19) +==25523== +==25523== Open file descriptor 158: +==25523== +==25523== +==25523== Open file descriptor 155: +==25523== +==25523== +==25523== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedSrnModels_valgrind.txt +==25523== +==25523== +==25523== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25523== +==25523== +==25523== +==25523== HEAP SUMMARY: +==25523== in use at exit: 618,386 bytes in 8,240 blocks +==25523== total heap usage: 57,245 allocs, 49,005 frees, 1,339,480,217 bytes allocated +==25523== +==25523== LEAK SUMMARY: +==25523== definitely lost: 0 bytes in 0 blocks +==25523== indirectly lost: 0 bytes in 0 blocks +==25523== possibly lost: 0 bytes in 0 blocks +==25523== still reachable: 72 bytes in 4 blocks +==25523== suppressed: 618,314 bytes in 8,236 blocks +==25523== Reachable blocks (those to which a pointer was found) are not shown. +==25523== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25523== +==25523== For lists of detected and suppressed errors, rerun with: -s +==25523== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestOdeLinearSystemSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOdeLinearSystemSolver_valgrind.txt new file mode 100644 index 000000000..a134fdba8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOdeLinearSystemSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25784== Memcheck, a memory error detector +==25784== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25784== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25784== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOdeLinearSystemSolver -malloc_debug -malloc_dump -memory_info +==25784== Parent PID: 24057 +==25784== +==25784== +==25784== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25784== Open file descriptor 12: +==25784== at 0xEC6607D: pipe (pipe.c:29) +==25784== by 0x196B507D: ??? +==25784== by 0x14C8B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25784== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25784== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25784== by 0xD659D38: PetscInitialize (pinit.c:924) +==25784== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25784== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25784== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25784== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25784== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25784== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25784== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25784== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25784== +==25784== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25784== at 0xEC6AA1C: __open_nocancel (open64_nocancel.c:39) +==25784== by 0xEBEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25784== by 0xE8EE822: ??? +==25784== by 0xE8EE96F: ??? +==25784== by 0x14D306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25784== by 0x14D30938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25784== by 0x14CE6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25784== by 0x14C8B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25784== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25784== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25784== by 0xD659D38: PetscInitialize (pinit.c:924) +==25784== by 0xD5301D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25784== by 0xD530227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25784== by 0x112010: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25784== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25784== by 0x1100A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25784== by 0x10FFA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25784== by 0x1105B5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25784== by 0x10C555: main (TestOdeLinearSystemSolver.cpp:18) +==25784== +==25784== Open file descriptor 158: +==25784== +==25784== +==25784== Open file descriptor 155: +==25784== +==25784== +==25784== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeLinearSystemSolver_valgrind.txt +==25784== +==25784== +==25784== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25784== +==25784== +==25784== +==25784== HEAP SUMMARY: +==25784== in use at exit: 618,338 bytes in 8,238 blocks +==25784== total heap usage: 55,511 allocs, 47,273 frees, 1,339,627,244 bytes allocated +==25784== +==25784== LEAK SUMMARY: +==25784== definitely lost: 0 bytes in 0 blocks +==25784== indirectly lost: 0 bytes in 0 blocks +==25784== possibly lost: 0 bytes in 0 blocks +==25784== still reachable: 24 bytes in 2 blocks +==25784== suppressed: 618,314 bytes in 8,236 blocks +==25784== Reachable blocks (those to which a pointer was found) are not shown. +==25784== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25784== +==25784== For lists of detected and suppressed errors, rerun with: -s +==25784== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeCryptProjectionSimulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeCryptProjectionSimulation_valgrind.txt new file mode 100644 index 000000000..4e66f3ff8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeCryptProjectionSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==40667== Memcheck, a memory error detector +==40667== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40667== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40667== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info +==40667== Parent PID: 24057 +==40667== +==40667== +==40667== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40667== Open file descriptor 12: +==40667== at 0x1265F07D: pipe (pipe.c:29) +==40667== by 0x1B37607D: ??? +==40667== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40667== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40667== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40667== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40667== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40667== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40667== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40667== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40667== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40667== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40667== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40667== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40667== +==40667== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40667== at 0x12663A1C: __open_nocancel (open64_nocancel.c:39) +==40667== by 0x125E7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40667== by 0x11D82822: ??? +==40667== by 0x11D8296F: ??? +==40667== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40667== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40667== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40667== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40667== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40667== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40667== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40667== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40667== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40667== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40667== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40667== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40667== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40667== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40667== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) +==40667== +==40667== Open file descriptor 158: +==40667== +==40667== +==40667== Open file descriptor 155: +==40667== +==40667== +==40667== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt +==40667== +==40667== +==40667== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40667== +==40667== +==40667== +==40667== HEAP SUMMARY: +==40667== in use at exit: 618,386 bytes in 8,239 blocks +==40667== total heap usage: 1,347,981 allocs, 1,339,742 frees, 1,453,034,674 bytes allocated +==40667== +==40667== LEAK SUMMARY: +==40667== definitely lost: 0 bytes in 0 blocks +==40667== indirectly lost: 0 bytes in 0 blocks +==40667== possibly lost: 0 bytes in 0 blocks +==40667== still reachable: 56 bytes in 3 blocks +==40667== suppressed: 618,330 bytes in 8,236 blocks +==40667== Reachable blocks (those to which a pointer was found) are not shown. +==40667== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40667== +==40667== For lists of detected and suppressed errors, rerun with: -s +==40667== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeRandomFieldGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..3be930f92 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeRandomFieldGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24958== Memcheck, a memory error detector +==24958== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24958== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24958== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestOffLatticeRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24958== Parent PID: 24057 +==24958== +==24958== +==24958== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24958== Open file descriptor 12: +==24958== at 0x7E5B07D: pipe (pipe.c:29) +==24958== by 0x100CC07D: ??? +==24958== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24958== by 0x7AAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x7A43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x6717D38: PetscInitialize (pinit.c:924) +==24958== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24958== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24958== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24958== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24958== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24958== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24958== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24958== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24958== +==24958== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24958== at 0x7E5FA1C: __open_nocancel (open64_nocancel.c:39) +==24958== by 0x7DE3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24958== by 0x79AC822: ??? +==24958== by 0x79AC96F: ??? +==24958== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24958== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24958== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24958== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24958== by 0x7AAA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x7A43D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24958== by 0x6717D38: PetscInitialize (pinit.c:924) +==24958== by 0x65EC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24958== by 0x65EC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24958== by 0x1256B1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24958== by 0x121073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24958== by 0x123452: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24958== by 0x12334D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24958== by 0x123961: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24958== by 0x11F875: main (TestOffLatticeRandomFieldGenerator.cpp:18) +==24958== +==24958== Open file descriptor 158: +==24958== +==24958== +==24958== Open file descriptor 155: +==24958== +==24958== +==24958== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeRandomFieldGenerator_valgrind.txt +==24958== +==24958== +==24958== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24958== +==24958== +==24958== +==24958== HEAP SUMMARY: +==24958== in use at exit: 620,794 bytes in 8,239 blocks +==24958== total heap usage: 515,646 allocs, 507,407 frees, 1,362,757,539 bytes allocated +==24958== +==24958== LEAK SUMMARY: +==24958== definitely lost: 0 bytes in 0 blocks +==24958== indirectly lost: 0 bytes in 0 blocks +==24958== possibly lost: 0 bytes in 0 blocks +==24958== still reachable: 2,576 bytes in 3 blocks +==24958== suppressed: 618,218 bytes in 8,236 blocks +==24958== Reachable blocks (those to which a pointer was found) are not shown. +==24958== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24958== +==24958== For lists of detected and suppressed errors, rerun with: -s +==24958== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulation3d_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulation3d_valgrind.txt new file mode 100644 index 000000000..ca4254ea2 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulation3d_valgrind.txt @@ -0,0 +1,73 @@ +==26631== Memcheck, a memory error detector +==26631== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26631== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26631== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info +==26631== Parent PID: 24057 +==26631== +==26631== +==26631== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26631== Open file descriptor 12: +==26631== at 0x10DE107D: pipe (pipe.c:29) +==26631== by 0x196B407D: ??? +==26631== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26631== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26631== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26631== by 0xF292D38: PetscInitialize (pinit.c:924) +==26631== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26631== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26631== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26631== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26631== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26631== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26631== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26631== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26631== +==26631== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26631== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26631== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26631== by 0xF144822: ??? +==26631== by 0xF14496F: ??? +==26631== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26631== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26631== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26631== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26631== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26631== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26631== by 0xF292D38: PetscInitialize (pinit.c:924) +==26631== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26631== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26631== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26631== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26631== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26631== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26631== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26631== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) +==26631== +==26631== Open file descriptor 158: +==26631== +==26631== +==26631== Open file descriptor 155: +==26631== +==26631== +==26631== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt +==26631== +==26631== +==26631== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26631== +==26631== +==26631== +==26631== HEAP SUMMARY: +==26631== in use at exit: 618,370 bytes in 8,239 blocks +==26631== total heap usage: 868,212 allocs, 859,973 frees, 1,504,054,058 bytes allocated +==26631== +==26631== LEAK SUMMARY: +==26631== definitely lost: 0 bytes in 0 blocks +==26631== indirectly lost: 0 bytes in 0 blocks +==26631== possibly lost: 0 bytes in 0 blocks +==26631== still reachable: 56 bytes in 3 blocks +==26631== suppressed: 618,314 bytes in 8,236 blocks +==26631== Reachable blocks (those to which a pointer was found) are not shown. +==26631== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26631== +==26631== For lists of detected and suppressed errors, rerun with: -s +==26631== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithBuskeForces_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithBuskeForces_valgrind.txt new file mode 100644 index 000000000..41e4493aa --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithBuskeForces_valgrind.txt @@ -0,0 +1,73 @@ +==26657== Memcheck, a memory error detector +==26657== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26657== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26657== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithBuskeForces -malloc_debug -malloc_dump -memory_info +==26657== Parent PID: 24057 +==26657== +==26657== +==26657== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26657== Open file descriptor 12: +==26657== at 0xF8E807D: pipe (pipe.c:29) +==26657== by 0x196B407D: ??? +==26657== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26657== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26657== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26657== by 0x10218D38: PetscInitialize (pinit.c:924) +==26657== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26657== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26657== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26657== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26657== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26657== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26657== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26657== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26657== +==26657== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26657== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26657== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26657== by 0xF144822: ??? +==26657== by 0xF14496F: ??? +==26657== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26657== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26657== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26657== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26657== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26657== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26657== by 0x10218D38: PetscInitialize (pinit.c:924) +==26657== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26657== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26657== by 0x1241FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26657== by 0x11F593: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26657== by 0x121AD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26657== by 0x1219D3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26657== by 0x121FE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26657== by 0x11DD95: main (TestOffLatticeSimulationWithBuskeForces.cpp:18) +==26657== +==26657== Open file descriptor 158: +==26657== +==26657== +==26657== Open file descriptor 155: +==26657== +==26657== +==26657== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithBuskeForces_valgrind.txt +==26657== +==26657== +==26657== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26657== +==26657== +==26657== +==26657== HEAP SUMMARY: +==26657== in use at exit: 618,297 bytes in 8,235 blocks +==26657== total heap usage: 3,734,020 allocs, 3,725,785 frees, 4,478,528,008 bytes allocated +==26657== +==26657== LEAK SUMMARY: +==26657== definitely lost: 0 bytes in 0 blocks +==26657== indirectly lost: 0 bytes in 0 blocks +==26657== possibly lost: 0 bytes in 0 blocks +==26657== still reachable: 56 bytes in 3 blocks +==26657== suppressed: 618,241 bytes in 8,232 blocks +==26657== Reachable blocks (those to which a pointer was found) are not shown. +==26657== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26657== +==26657== For lists of detected and suppressed errors, rerun with: -s +==26657== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt new file mode 100644 index 000000000..4cb5021ab --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt @@ -0,0 +1,73 @@ +==26875== Memcheck, a memory error detector +==26875== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26875== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26875== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info +==26875== Parent PID: 24057 +==26875== +==26875== +==26875== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26875== Open file descriptor 12: +==26875== at 0xF8E807D: pipe (pipe.c:29) +==26875== by 0x196B407D: ??? +==26875== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26875== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26875== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26875== by 0x10218D38: PetscInitialize (pinit.c:924) +==26875== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26875== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26875== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26875== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26875== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26875== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26875== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26875== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26875== +==26875== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26875== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26875== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26875== by 0xF144822: ??? +==26875== by 0xF14496F: ??? +==26875== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26875== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26875== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26875== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26875== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26875== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26875== by 0x10218D38: PetscInitialize (pinit.c:924) +==26875== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26875== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26875== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26875== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26875== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26875== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26875== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26875== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) +==26875== +==26875== Open file descriptor 158: +==26875== +==26875== +==26875== Open file descriptor 155: +==26875== +==26875== +==26875== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt +==26875== +==26875== +==26875== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26875== +==26875== +==26875== +==26875== HEAP SUMMARY: +==26875== in use at exit: 618,297 bytes in 8,235 blocks +==26875== total heap usage: 7,117,451 allocs, 7,109,216 frees, 8,996,566,402 bytes allocated +==26875== +==26875== LEAK SUMMARY: +==26875== definitely lost: 0 bytes in 0 blocks +==26875== indirectly lost: 0 bytes in 0 blocks +==26875== possibly lost: 0 bytes in 0 blocks +==26875== still reachable: 56 bytes in 3 blocks +==26875== suppressed: 618,241 bytes in 8,232 blocks +==26875== Reachable blocks (those to which a pointer was found) are not shown. +==26875== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26875== +==26875== For lists of detected and suppressed errors, rerun with: -s +==26875== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..4250c9b2c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26766== Memcheck, a memory error detector +==26766== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26766== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26766== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26766== Parent PID: 24057 +==26766== +==26766== +==26766== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26766== Open file descriptor 12: +==26766== at 0xF92C07D: pipe (pipe.c:29) +==26766== by 0x196B407D: ??? +==26766== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26766== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26766== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26766== by 0x10218D38: PetscInitialize (pinit.c:924) +==26766== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26766== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26766== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26766== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26766== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26766== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26766== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26766== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26766== +==26766== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26766== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26766== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26766== by 0xF144822: ??? +==26766== by 0xF14496F: ??? +==26766== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26766== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26766== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26766== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26766== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26766== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26766== by 0x10218D38: PetscInitialize (pinit.c:924) +==26766== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26766== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26766== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26766== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26766== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26766== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26766== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26766== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) +==26766== +==26766== Open file descriptor 158: +==26766== +==26766== +==26766== Open file descriptor 155: +==26766== +==26766== +==26766== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt +==26766== +==26766== +==26766== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26766== +==26766== +==26766== +==26766== HEAP SUMMARY: +==26766== in use at exit: 618,329 bytes in 8,236 blocks +==26766== total heap usage: 18,258,675 allocs, 18,250,439 frees, 30,027,858,383 bytes allocated +==26766== +==26766== LEAK SUMMARY: +==26766== definitely lost: 0 bytes in 0 blocks +==26766== indirectly lost: 0 bytes in 0 blocks +==26766== possibly lost: 0 bytes in 0 blocks +==26766== still reachable: 88 bytes in 4 blocks +==26766== suppressed: 618,241 bytes in 8,232 blocks +==26766== Reachable blocks (those to which a pointer was found) are not shown. +==26766== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26766== +==26766== For lists of detected and suppressed errors, rerun with: -s +==26766== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithPdes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..fdef0b6c2 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==27116== Memcheck, a memory error detector +==27116== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27116== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27116== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==27116== Parent PID: 24057 +==27116== +==27116== +==27116== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27116== Open file descriptor 12: +==27116== at 0xFCC907D: pipe (pipe.c:29) +==27116== by 0x196B407D: ??? +==27116== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27116== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27116== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27116== by 0x10218D38: PetscInitialize (pinit.c:924) +==27116== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27116== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27116== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27116== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27116== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27116== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27116== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27116== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==27116== +==27116== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27116== at 0xFCCDA1C: __open_nocancel (open64_nocancel.c:39) +==27116== by 0xFC51BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27116== by 0xF4E1822: ??? +==27116== by 0xF4E196F: ??? +==27116== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27116== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27116== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27116== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27116== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27116== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27116== by 0x10218D38: PetscInitialize (pinit.c:924) +==27116== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27116== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27116== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27116== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27116== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27116== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27116== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27116== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) +==27116== +==27116== Open file descriptor 158: +==27116== +==27116== +==27116== Open file descriptor 155: +==27116== +==27116== +==27116== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt +==27116== +==27116== +==27116== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27116== +==27116== +==27116== +==27116== HEAP SUMMARY: +==27116== in use at exit: 618,297 bytes in 8,235 blocks +==27116== total heap usage: 8,504,965 allocs, 8,496,730 frees, 2,658,931,378 bytes allocated +==27116== +==27116== LEAK SUMMARY: +==27116== definitely lost: 0 bytes in 0 blocks +==27116== indirectly lost: 0 bytes in 0 blocks +==27116== possibly lost: 0 bytes in 0 blocks +==27116== still reachable: 56 bytes in 3 blocks +==27116== suppressed: 618,241 bytes in 8,232 blocks +==27116== Reachable blocks (those to which a pointer was found) are not shown. +==27116== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27116== +==27116== For lists of detected and suppressed errors, rerun with: -s +==27116== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..d7a89dac9 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27354== Memcheck, a memory error detector +==27354== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27354== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27354== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27354== Parent PID: 24057 +==27354== +==27354== +==27354== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27354== Open file descriptor 12: +==27354== at 0x10DE107D: pipe (pipe.c:29) +==27354== by 0x196B407D: ??? +==27354== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27354== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27354== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27354== by 0xF292D38: PetscInitialize (pinit.c:924) +==27354== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27354== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27354== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27354== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27354== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27354== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27354== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27354== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27354== +==27354== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27354== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==27354== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27354== by 0xF144822: ??? +==27354== by 0xF14496F: ??? +==27354== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27354== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27354== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27354== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27354== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27354== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27354== by 0xF292D38: PetscInitialize (pinit.c:924) +==27354== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27354== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27354== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==27354== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27354== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27354== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27354== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27354== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) +==27354== +==27354== Open file descriptor 158: +==27354== +==27354== +==27354== Open file descriptor 155: +==27354== +==27354== +==27354== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt +==27354== +==27354== +==27354== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27354== +==27354== +==27354== +==27354== HEAP SUMMARY: +==27354== in use at exit: 618,297 bytes in 8,235 blocks +==27354== total heap usage: 9,703,048 allocs, 9,694,813 frees, 2,583,527,302 bytes allocated +==27354== +==27354== LEAK SUMMARY: +==27354== definitely lost: 0 bytes in 0 blocks +==27354== indirectly lost: 0 bytes in 0 blocks +==27354== possibly lost: 0 bytes in 0 blocks +==27354== still reachable: 56 bytes in 3 blocks +==27354== suppressed: 618,241 bytes in 8,232 blocks +==27354== Reachable blocks (those to which a pointer was found) are not shown. +==27354== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27354== +==27354== For lists of detected and suppressed errors, rerun with: -s +==27354== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOffLatticeSimulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulation_valgrind.txt new file mode 100644 index 000000000..9761946a8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOffLatticeSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==26616== Memcheck, a memory error detector +==26616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26616== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26616== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info +==26616== Parent PID: 24057 +==26616== +==26616== +==26616== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26616== Open file descriptor 12: +==26616== at 0xF92C07D: pipe (pipe.c:29) +==26616== by 0x196B407D: ??? +==26616== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26616== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26616== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26616== by 0x10218D38: PetscInitialize (pinit.c:924) +==26616== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26616== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26616== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26616== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26616== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26616== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26616== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26616== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26616== +==26616== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26616== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==26616== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26616== by 0xF144822: ??? +==26616== by 0xF14496F: ??? +==26616== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26616== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26616== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26616== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26616== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26616== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26616== by 0x10218D38: PetscInitialize (pinit.c:924) +==26616== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26616== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26616== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26616== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26616== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26616== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26616== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26616== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) +==26616== +==26616== Open file descriptor 158: +==26616== +==26616== +==26616== Open file descriptor 155: +==26616== +==26616== +==26616== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt +==26616== +==26616== +==26616== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26616== +==26616== +==26616== +==26616== HEAP SUMMARY: +==26616== in use at exit: 618,297 bytes in 8,235 blocks +==26616== total heap usage: 12,337,487 allocs, 12,329,252 frees, 3,798,822,162 bytes allocated +==26616== +==26616== LEAK SUMMARY: +==26616== definitely lost: 0 bytes in 0 blocks +==26616== indirectly lost: 0 bytes in 0 blocks +==26616== possibly lost: 0 bytes in 0 blocks +==26616== still reachable: 56 bytes in 3 blocks +==26616== suppressed: 618,241 bytes in 8,232 blocks +==26616== Reachable blocks (those to which a pointer was found) are not shown. +==26616== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26616== +==26616== For lists of detected and suppressed errors, rerun with: -s +==26616== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..0519c7a88 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==27460== Memcheck, a memory error detector +==27460== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27460== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27460== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==27460== Parent PID: 24057 +==27460== +==27460== +==27460== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27460== Open file descriptor 12: +==27460== at 0xFDA807D: pipe (pipe.c:29) +==27460== by 0x196B407D: ??? +==27460== by 0x14DDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27460== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27460== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27460== by 0x10694D38: PetscInitialize (pinit.c:924) +==27460== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27460== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27460== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27460== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27460== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27460== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27460== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27460== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27460== +==27460== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27460== at 0xFDACA1C: __open_nocancel (open64_nocancel.c:39) +==27460== by 0xFD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27460== by 0xF144822: ??? +==27460== by 0xF14496F: ??? +==27460== by 0x14E836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27460== by 0x14E83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27460== by 0x14E39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27460== by 0x14DDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27460== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27460== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27460== by 0x10694D38: PetscInitialize (pinit.c:924) +==27460== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27460== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27460== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27460== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27460== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27460== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27460== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27460== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) +==27460== +==27460== Open file descriptor 158: +==27460== +==27460== +==27460== Open file descriptor 155: +==27460== +==27460== +==27460== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt +==27460== +==27460== +==27460== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27460== +==27460== +==27460== +==27460== HEAP SUMMARY: +==27460== in use at exit: 618,297 bytes in 8,235 blocks +==27460== total heap usage: 7,141,343 allocs, 7,133,108 frees, 8,072,506,077 bytes allocated +==27460== +==27460== LEAK SUMMARY: +==27460== definitely lost: 0 bytes in 0 blocks +==27460== indirectly lost: 0 bytes in 0 blocks +==27460== possibly lost: 0 bytes in 0 blocks +==27460== still reachable: 56 bytes in 3 blocks +==27460== suppressed: 618,241 bytes in 8,232 blocks +==27460== Reachable blocks (those to which a pointer was found) are not shown. +==27460== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27460== +==27460== For lists of detected and suppressed errors, rerun with: -s +==27460== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithPdes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithPdes_valgrind.txt new file mode 100644 index 000000000..41dd582d3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithPdes_valgrind.txt @@ -0,0 +1,73 @@ +==27536== Memcheck, a memory error detector +==27536== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==27536== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==27536== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info +==27536== Parent PID: 24057 +==27536== +==27536== +==27536== FILE DESCRIPTORS: 9 open (3 std) at exit. +==27536== Open file descriptor 12: +==27536== at 0xFC8707D: pipe (pipe.c:29) +==27536== by 0x196B407D: ??? +==27536== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27536== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27536== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27536== by 0x10218D38: PetscInitialize (pinit.c:924) +==27536== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27536== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27536== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27536== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27536== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27536== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27536== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27536== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27536== +==27536== Open file descriptor 8: /dev/shm/open_mpi.0000 +==27536== at 0xFC8BA1C: __open_nocancel (open64_nocancel.c:39) +==27536== by 0xFC0FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==27536== by 0xF4E1822: ??? +==27536== by 0xF4E196F: ??? +==27536== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27536== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27536== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==27536== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==27536== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27536== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==27536== by 0x10218D38: PetscInitialize (pinit.c:924) +==27536== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==27536== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==27536== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==27536== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==27536== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==27536== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==27536== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==27536== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) +==27536== +==27536== Open file descriptor 158: +==27536== +==27536== +==27536== Open file descriptor 155: +==27536== +==27536== +==27536== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt +==27536== +==27536== +==27536== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==27536== +==27536== +==27536== +==27536== HEAP SUMMARY: +==27536== in use at exit: 618,297 bytes in 8,235 blocks +==27536== total heap usage: 2,400,123 allocs, 2,391,888 frees, 1,776,528,225 bytes allocated +==27536== +==27536== LEAK SUMMARY: +==27536== definitely lost: 0 bytes in 0 blocks +==27536== indirectly lost: 0 bytes in 0 blocks +==27536== possibly lost: 0 bytes in 0 blocks +==27536== still reachable: 56 bytes in 3 blocks +==27536== suppressed: 618,241 bytes in 8,232 blocks +==27536== Reachable blocks (those to which a pointer was found) are not shown. +==27536== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==27536== +==27536== For lists of detected and suppressed errors, rerun with: -s +==27536== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..fc2dbd9aa --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==37048== Memcheck, a memory error detector +==37048== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37048== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37048== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==37048== Parent PID: 24057 +==37048== +==37048== +==37048== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37048== Open file descriptor 12: +==37048== at 0xF92C07D: pipe (pipe.c:29) +==37048== by 0x196B407D: ??? +==37048== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37048== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37048== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37048== by 0x10218D38: PetscInitialize (pinit.c:924) +==37048== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37048== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37048== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37048== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37048== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37048== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37048== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37048== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==37048== +==37048== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37048== at 0xF930A1C: __open_nocancel (open64_nocancel.c:39) +==37048== by 0xF8B4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37048== by 0xF144822: ??? +==37048== by 0xF14496F: ??? +==37048== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37048== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37048== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37048== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37048== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37048== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37048== by 0x10218D38: PetscInitialize (pinit.c:924) +==37048== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37048== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37048== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==37048== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37048== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37048== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37048== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37048== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) +==37048== +==37048== Open file descriptor 158: +==37048== +==37048== +==37048== Open file descriptor 155: +==37048== +==37048== +==37048== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt +==37048== +==37048== +==37048== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37048== +==37048== +==37048== +==37048== HEAP SUMMARY: +==37048== in use at exit: 618,313 bytes in 8,236 blocks +==37048== total heap usage: 11,682,559 allocs, 11,674,323 frees, 2,208,189,350 bytes allocated +==37048== +==37048== LEAK SUMMARY: +==37048== definitely lost: 0 bytes in 0 blocks +==37048== indirectly lost: 0 bytes in 0 blocks +==37048== possibly lost: 0 bytes in 0 blocks +==37048== still reachable: 72 bytes in 4 blocks +==37048== suppressed: 618,241 bytes in 8,232 blocks +==37048== Reachable blocks (those to which a pointer was found) are not shown. +==37048== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37048== +==37048== For lists of detected and suppressed errors, rerun with: -s +==37048== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestOperatorSplittingMonodomainSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOperatorSplittingMonodomainSolver_valgrind.txt new file mode 100644 index 000000000..c2e294d2e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOperatorSplittingMonodomainSolver_valgrind.txt @@ -0,0 +1,73 @@ +==43863== Memcheck, a memory error detector +==43863== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43863== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43863== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestOperatorSplittingMonodomainSolver -malloc_debug -malloc_dump -memory_info +==43863== Parent PID: 24057 +==43863== +==43863== +==43863== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43863== Open file descriptor 12: +==43863== at 0xA75B07D: pipe (pipe.c:29) +==43863== by 0x1432F07D: ??? +==43863== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43863== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43863== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43863== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43863== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43863== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43863== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43863== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43863== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43863== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43863== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43863== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43863== +==43863== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43863== at 0xA75FA1C: __open_nocancel (open64_nocancel.c:39) +==43863== by 0xA6E3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43863== by 0xA082822: ??? +==43863== by 0xA08296F: ??? +==43863== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43863== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43863== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43863== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43863== by 0xBE54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43863== by 0xBDEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43863== by 0xAAE4D38: PetscInitialize (pinit.c:924) +==43863== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43863== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43863== by 0x1199B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43863== by 0x115213: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43863== by 0x1175A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43863== by 0x11749F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43863== by 0x117AB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43863== by 0x113A15: main (TestOperatorSplittingMonodomainSolver.cpp:18) +==43863== +==43863== Open file descriptor 158: +==43863== +==43863== +==43863== Open file descriptor 155: +==43863== +==43863== +==43863== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOperatorSplittingMonodomainSolver_valgrind.txt +==43863== +==43863== +==43863== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43863== +==43863== +==43863== +==43863== HEAP SUMMARY: +==43863== in use at exit: 618,834 bytes in 8,248 blocks +==43863== total heap usage: 81,701 allocs, 73,453 frees, 1,494,730,083 bytes allocated +==43863== +==43863== LEAK SUMMARY: +==43863== definitely lost: 0 bytes in 0 blocks +==43863== indirectly lost: 0 bytes in 0 blocks +==43863== possibly lost: 0 bytes in 0 blocks +==43863== still reachable: 24 bytes in 2 blocks +==43863== suppressed: 618,810 bytes in 8,246 blocks +==43863== Reachable blocks (those to which a pointer was found) are not shown. +==43863== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43863== +==43863== For lists of detected and suppressed errors, rerun with: -s +==43863== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestOutputDirectoryFifoQueue_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOutputDirectoryFifoQueue_valgrind.txt new file mode 100644 index 000000000..0f00aaf38 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOutputDirectoryFifoQueue_valgrind.txt @@ -0,0 +1,73 @@ +==24230== Memcheck, a memory error detector +==24230== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24230== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24230== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputDirectoryFifoQueue -malloc_debug -malloc_dump -memory_info +==24230== Parent PID: 24057 +==24230== +==24230== +==24230== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24230== Open file descriptor 12: +==24230== at 0x4CB207D: pipe (pipe.c:29) +==24230== by 0xAEA507D: ??? +==24230== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24230== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24230== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24230== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24230== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24230== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24230== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24230== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24230== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24230== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24230== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24230== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24230== +==24230== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24230== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24230== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24230== by 0x493A822: ??? +==24230== by 0x493A96F: ??? +==24230== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24230== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24230== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24230== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24230== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24230== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24230== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24230== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24230== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24230== by 0x114118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24230== by 0x10FF93: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24230== by 0x1121E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24230== by 0x1120DD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24230== by 0x1126F1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24230== by 0x10E795: main (TestOutputDirectoryFifoQueue.cpp:18) +==24230== +==24230== Open file descriptor 158: +==24230== +==24230== +==24230== Open file descriptor 155: +==24230== +==24230== +==24230== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputDirectoryFifoQueue_valgrind.txt +==24230== +==24230== +==24230== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24230== +==24230== +==24230== +==24230== HEAP SUMMARY: +==24230== in use at exit: 617,874 bytes in 8,238 blocks +==24230== total heap usage: 45,612 allocs, 37,374 frees, 1,338,680,049 bytes allocated +==24230== +==24230== LEAK SUMMARY: +==24230== definitely lost: 0 bytes in 0 blocks +==24230== indirectly lost: 0 bytes in 0 blocks +==24230== possibly lost: 0 bytes in 0 blocks +==24230== still reachable: 24 bytes in 2 blocks +==24230== suppressed: 617,850 bytes in 8,236 blocks +==24230== Reachable blocks (those to which a pointer was found) are not shown. +==24230== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24230== +==24230== For lists of detected and suppressed errors, rerun with: -s +==24230== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestOutputFileHandler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestOutputFileHandler_valgrind.txt new file mode 100644 index 000000000..4be6401ae --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestOutputFileHandler_valgrind.txt @@ -0,0 +1,73 @@ +==24232== Memcheck, a memory error detector +==24232== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24232== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24232== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestOutputFileHandler -malloc_debug -malloc_dump -memory_info +==24232== Parent PID: 24057 +==24232== +==24232== +==24232== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24232== Open file descriptor 12: +==24232== at 0x4CB207D: pipe (pipe.c:29) +==24232== by 0xAEA507D: ??? +==24232== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24232== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24232== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24232== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24232== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24232== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24232== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24232== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24232== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24232== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24232== +==24232== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24232== at 0x4CB6A1C: __open_nocancel (open64_nocancel.c:39) +==24232== by 0x4C3ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24232== by 0x493A822: ??? +==24232== by 0x493A96F: ??? +==24232== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24232== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24232== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24232== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24232== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24232== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==24232== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24232== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24232== by 0x11718A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24232== by 0x1128AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24232== by 0x11514C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24232== by 0x114FEC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24232== by 0x115683: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24232== by 0x110CD5: main (TestOutputFileHandler.cpp:19) +==24232== +==24232== Open file descriptor 158: +==24232== +==24232== +==24232== Open file descriptor 155: +==24232== +==24232== +==24232== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOutputFileHandler_valgrind.txt +==24232== +==24232== +==24232== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24232== +==24232== +==24232== +==24232== HEAP SUMMARY: +==24232== in use at exit: 617,874 bytes in 8,238 blocks +==24232== total heap usage: 46,514 allocs, 38,276 frees, 1,339,257,174 bytes allocated +==24232== +==24232== LEAK SUMMARY: +==24232== definitely lost: 0 bytes in 0 blocks +==24232== indirectly lost: 0 bytes in 0 blocks +==24232== possibly lost: 0 bytes in 0 blocks +==24232== still reachable: 24 bytes in 2 blocks +==24232== suppressed: 617,850 bytes in 8,236 blocks +==24232== Reachable blocks (those to which a pointer was found) are not shown. +==24232== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24232== +==24232== For lists of detected and suppressed errors, rerun with: -s +==24232== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPCBlockDiagonal_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPCBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..98d4fec55 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPCBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24406== Memcheck, a memory error detector +==24406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24406== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24406== Parent PID: 24057 +==24406== +==24406== +==24406== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24406== Open file descriptor 12: +==24406== at 0x60C107D: pipe (pipe.c:29) +==24406== by 0xAF3907D: ??? +==24406== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24406== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24406== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24406== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24406== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24406== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24406== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24406== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24406== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24406== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24406== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24406== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24406== +==24406== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24406== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24406== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24406== by 0x5D47822: ??? +==24406== by 0x5D4796F: ??? +==24406== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24406== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24406== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24406== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24406== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24406== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24406== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24406== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24406== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24406== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24406== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24406== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24406== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24406== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24406== by 0x10D995: main (TestPCBlockDiagonal.cpp:18) +==24406== +==24406== Open file descriptor 158: +==24406== +==24406== +==24406== Open file descriptor 155: +==24406== +==24406== +==24406== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCBlockDiagonal_valgrind.txt +==24406== +==24406== +==24406== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24406== +==24406== +==24406== +==24406== HEAP SUMMARY: +==24406== in use at exit: 617,906 bytes in 8,239 blocks +==24406== total heap usage: 56,334 allocs, 48,095 frees, 1,364,708,286 bytes allocated +==24406== +==24406== LEAK SUMMARY: +==24406== definitely lost: 0 bytes in 0 blocks +==24406== indirectly lost: 0 bytes in 0 blocks +==24406== possibly lost: 0 bytes in 0 blocks +==24406== still reachable: 40 bytes in 3 blocks +==24406== suppressed: 617,866 bytes in 8,236 blocks +==24406== Reachable blocks (those to which a pointer was found) are not shown. +==24406== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24406== +==24406== For lists of detected and suppressed errors, rerun with: -s +==24406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPCLDUFactorisation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPCLDUFactorisation_valgrind.txt new file mode 100644 index 000000000..b3f9a33f4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPCLDUFactorisation_valgrind.txt @@ -0,0 +1,73 @@ +==24407== Memcheck, a memory error detector +==24407== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24407== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24407== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info +==24407== Parent PID: 24057 +==24407== +==24407== +==24407== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24407== Open file descriptor 12: +==24407== at 0x60C107D: pipe (pipe.c:29) +==24407== by 0xAF3907D: ??? +==24407== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24407== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24407== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24407== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24407== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24407== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24407== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24407== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24407== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24407== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24407== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24407== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24407== +==24407== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24407== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24407== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24407== by 0x5D47822: ??? +==24407== by 0x5D4796F: ??? +==24407== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24407== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24407== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24407== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24407== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24407== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24407== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24407== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24407== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24407== by 0x113670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24407== by 0x10F193: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24407== by 0x1115C8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24407== by 0x1114C3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24407== by 0x111AD7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24407== by 0x10D995: main (TestPCLDUFactorisation.cpp:18) +==24407== +==24407== Open file descriptor 158: +==24407== +==24407== +==24407== Open file descriptor 155: +==24407== +==24407== +==24407== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCLDUFactorisation_valgrind.txt +==24407== +==24407== +==24407== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24407== +==24407== +==24407== +==24407== HEAP SUMMARY: +==24407== in use at exit: 617,906 bytes in 8,239 blocks +==24407== total heap usage: 57,130 allocs, 48,891 frees, 1,365,678,089 bytes allocated +==24407== +==24407== LEAK SUMMARY: +==24407== definitely lost: 0 bytes in 0 blocks +==24407== indirectly lost: 0 bytes in 0 blocks +==24407== possibly lost: 0 bytes in 0 blocks +==24407== still reachable: 40 bytes in 3 blocks +==24407== suppressed: 617,866 bytes in 8,236 blocks +==24407== Reachable blocks (those to which a pointer was found) are not shown. +==24407== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24407== +==24407== For lists of detected and suppressed errors, rerun with: -s +==24407== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPCTwoLevelsBlockDiagonal_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPCTwoLevelsBlockDiagonal_valgrind.txt new file mode 100644 index 000000000..fa6ae276d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPCTwoLevelsBlockDiagonal_valgrind.txt @@ -0,0 +1,73 @@ +==24414== Memcheck, a memory error detector +==24414== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24414== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24414== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCTwoLevelsBlockDiagonal -malloc_debug -malloc_dump -memory_info +==24414== Parent PID: 24057 +==24414== +==24414== +==24414== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24414== Open file descriptor 12: +==24414== at 0x60C107D: pipe (pipe.c:29) +==24414== by 0xAF3907D: ??? +==24414== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24414== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24414== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24414== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24414== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24414== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24414== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24414== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24414== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24414== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24414== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24414== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24414== +==24414== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24414== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24414== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24414== by 0x5D47822: ??? +==24414== by 0x5D4796F: ??? +==24414== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24414== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24414== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24414== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24414== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24414== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24414== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24414== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24414== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24414== by 0x114A0E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24414== by 0x110293: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24414== by 0x1127C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24414== by 0x1126C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24414== by 0x112CD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24414== by 0x10EA95: main (TestPCTwoLevelsBlockDiagonal.cpp:18) +==24414== +==24414== Open file descriptor 158: +==24414== +==24414== +==24414== Open file descriptor 155: +==24414== +==24414== +==24414== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPCTwoLevelsBlockDiagonal_valgrind.txt +==24414== +==24414== +==24414== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24414== +==24414== +==24414== +==24414== HEAP SUMMARY: +==24414== in use at exit: 617,906 bytes in 8,239 blocks +==24414== total heap usage: 76,513 allocs, 68,274 frees, 1,345,541,431 bytes allocated +==24414== +==24414== LEAK SUMMARY: +==24414== definitely lost: 0 bytes in 0 blocks +==24414== indirectly lost: 0 bytes in 0 blocks +==24414== possibly lost: 0 bytes in 0 blocks +==24414== still reachable: 40 bytes in 3 blocks +==24414== suppressed: 617,866 bytes in 8,236 blocks +==24414== Reachable blocks (those to which a pointer was found) are not shown. +==24414== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24414== +==24414== For lists of detected and suppressed errors, rerun with: -s +==24414== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPapillaryFibreCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPapillaryFibreCalculator_valgrind.txt new file mode 100644 index 000000000..9f2f0a55d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPapillaryFibreCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==41674== Memcheck, a memory error detector +==41674== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41674== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41674== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPapillaryFibreCalculator -malloc_debug -malloc_dump -memory_info +==41674== Parent PID: 24057 +==41674== +==41674== +==41674== FILE DESCRIPTORS: 7 open (3 std) at exit. +==41674== Open file descriptor 158: +==41674== +==41674== +==41674== Open file descriptor 155: +==41674== +==41674== +==41674== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPapillaryFibreCalculator_valgrind.txt +==41674== +==41674== +==41674== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41674== +==41674== +==41674== +==41674== HEAP SUMMARY: +==41674== in use at exit: 24 bytes in 2 blocks +==41674== total heap usage: 7,291 allocs, 7,289 frees, 1,074,352 bytes allocated +==41674== +==41674== LEAK SUMMARY: +==41674== definitely lost: 0 bytes in 0 blocks +==41674== indirectly lost: 0 bytes in 0 blocks +==41674== possibly lost: 0 bytes in 0 blocks +==41674== still reachable: 24 bytes in 2 blocks +==41674== suppressed: 0 bytes in 0 blocks +==41674== Reachable blocks (those to which a pointer was found) are not shown. +==41674== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41674== +==41674== For lists of detected and suppressed errors, rerun with: -s +==41674== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..8ef691c44 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25619== Memcheck, a memory error detector +==25619== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25619== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25619== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25619== Parent PID: 24057 +==25619== +==25619== +==25619== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25619== Open file descriptor 12: +==25619== at 0x1109707D: pipe (pipe.c:29) +==25619== by 0x196B407D: ??? +==25619== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25619== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25619== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25619== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25619== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25619== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25619== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25619== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25619== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25619== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25619== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25619== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25619== +==25619== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25619== at 0x1109BA1C: __open_nocancel (open64_nocancel.c:39) +==25619== by 0x1101FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25619== by 0xF4E1822: ??? +==25619== by 0xF4E196F: ??? +==25619== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25619== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25619== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25619== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25619== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25619== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25619== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25619== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25619== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25619== by 0x133C67: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25619== by 0x12E57D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25619== by 0x13121C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25619== by 0x1310BC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25619== by 0x131753: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25619== by 0x12C9A5: main (TestParabolicBoxDomainPdeModifier.cpp:19) +==25619== +==25619== Open file descriptor 158: +==25619== +==25619== +==25619== Open file descriptor 155: +==25619== +==25619== +==25619== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicBoxDomainPdeModifier_valgrind.txt +==25619== +==25619== +==25619== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25619== +==25619== +==25619== +==25619== HEAP SUMMARY: +==25619== in use at exit: 618,297 bytes in 8,235 blocks +==25619== total heap usage: 2,829,799 allocs, 2,821,564 frees, 1,621,917,828 bytes allocated +==25619== +==25619== LEAK SUMMARY: +==25619== definitely lost: 0 bytes in 0 blocks +==25619== indirectly lost: 0 bytes in 0 blocks +==25619== possibly lost: 0 bytes in 0 blocks +==25619== still reachable: 56 bytes in 3 blocks +==25619== suppressed: 618,241 bytes in 8,232 blocks +==25619== Reachable blocks (those to which a pointer was found) are not shown. +==25619== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25619== +==25619== For lists of detected and suppressed errors, rerun with: -s +==25619== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..de49132e6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25627== Memcheck, a memory error detector +==25627== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25627== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25627== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25627== Parent PID: 24057 +==25627== +==25627== +==25627== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25627== Open file descriptor 12: +==25627== at 0x1117E07D: pipe (pipe.c:29) +==25627== by 0x196B407D: ??? +==25627== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25627== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25627== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25627== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25627== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25627== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25627== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25627== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25627== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25627== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25627== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25627== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25627== +==25627== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25627== at 0x11182A1C: __open_nocancel (open64_nocancel.c:39) +==25627== by 0x11106BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25627== by 0xF4E1822: ??? +==25627== by 0xF4E196F: ??? +==25627== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25627== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25627== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25627== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25627== by 0x1099F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25627== by 0x10938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25627== by 0xF62FD38: PetscInitialize (pinit.c:924) +==25627== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25627== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25627== by 0x1396A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25627== by 0x13395D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25627== by 0x136826: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25627== by 0x1366C6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25627== by 0x136D5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25627== by 0x131D85: main (TestParabolicGrowingDomainPdeModifier.cpp:19) +==25627== +==25627== Open file descriptor 158: +==25627== +==25627== +==25627== Open file descriptor 155: +==25627== +==25627== +==25627== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParabolicGrowingDomainPdeModifier_valgrind.txt +==25627== +==25627== +==25627== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25627== +==25627== +==25627== +==25627== HEAP SUMMARY: +==25627== in use at exit: 618,297 bytes in 8,235 blocks +==25627== total heap usage: 7,057,268 allocs, 7,049,033 frees, 1,809,464,438 bytes allocated +==25627== +==25627== LEAK SUMMARY: +==25627== definitely lost: 0 bytes in 0 blocks +==25627== indirectly lost: 0 bytes in 0 blocks +==25627== possibly lost: 0 bytes in 0 blocks +==25627== still reachable: 56 bytes in 3 blocks +==25627== suppressed: 618,241 bytes in 8,232 blocks +==25627== Reachable blocks (those to which a pointer was found) are not shown. +==25627== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25627== +==25627== For lists of detected and suppressed errors, rerun with: -s +==25627== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestParallelCellsGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestParallelCellsGenerator_valgrind.txt new file mode 100644 index 000000000..0589b44b3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestParallelCellsGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25543== Memcheck, a memory error detector +==25543== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25543== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25543== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestParallelCellsGenerator -malloc_debug -malloc_dump -memory_info +==25543== Parent PID: 24057 +==25543== +==25543== +==25543== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25543== Open file descriptor 12: +==25543== at 0x10CB807D: pipe (pipe.c:29) +==25543== by 0x196B407D: ??? +==25543== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25543== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25543== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25543== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25543== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25543== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25543== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25543== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25543== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25543== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25543== +==25543== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25543== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==25543== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25543== by 0x104C2822: ??? +==25543== by 0x104C296F: ??? +==25543== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25543== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25543== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25543== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25543== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25543== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25543== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25543== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25543== by 0x123D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25543== by 0x11ED1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25543== by 0x1216E0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25543== by 0x121580: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25543== by 0x121C17: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25543== by 0x11D0F5: main (TestParallelCellsGenerator.cpp:19) +==25543== +==25543== Open file descriptor 158: +==25543== +==25543== +==25543== Open file descriptor 155: +==25543== +==25543== +==25543== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelCellsGenerator_valgrind.txt +==25543== +==25543== +==25543== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25543== +==25543== +==25543== +==25543== HEAP SUMMARY: +==25543== in use at exit: 618,434 bytes in 8,240 blocks +==25543== total heap usage: 54,340 allocs, 46,100 frees, 1,339,091,049 bytes allocated +==25543== +==25543== LEAK SUMMARY: +==25543== definitely lost: 0 bytes in 0 blocks +==25543== indirectly lost: 0 bytes in 0 blocks +==25543== possibly lost: 0 bytes in 0 blocks +==25543== still reachable: 120 bytes in 4 blocks +==25543== suppressed: 618,314 bytes in 8,236 blocks +==25543== Reachable blocks (those to which a pointer was found) are not shown. +==25543== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25543== +==25543== For lists of detected and suppressed errors, rerun with: -s +==25543== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestParallelColumnDataReaderWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestParallelColumnDataReaderWriter_valgrind.txt new file mode 100644 index 000000000..e5e05d058 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestParallelColumnDataReaderWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24334== Memcheck, a memory error detector +==24334== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24334== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24334== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info +==24334== Parent PID: 24057 +==24334== +==24334== +==24334== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24334== Open file descriptor 12: +==24334== at 0x60A507D: pipe (pipe.c:29) +==24334== by 0xAF1807D: ??? +==24334== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24334== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24334== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24334== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24334== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24334== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24334== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24334== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24334== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24334== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24334== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24334== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24334== +==24334== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24334== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24334== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24334== by 0x5D2B822: ??? +==24334== by 0x5D2B96F: ??? +==24334== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24334== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24334== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24334== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24334== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24334== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24334== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24334== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24334== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24334== by 0x11B354: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24334== by 0x114A4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24334== by 0x1174D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24334== by 0x117378: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24334== by 0x117A0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24334== by 0x112E75: main (TestParallelColumnDataReaderWriter.cpp:19) +==24334== +==24334== Open file descriptor 158: +==24334== +==24334== +==24334== Open file descriptor 155: +==24334== +==24334== +==24334== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelColumnDataReaderWriter_valgrind.txt +==24334== +==24334== +==24334== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24334== +==24334== +==24334== +==24334== HEAP SUMMARY: +==24334== in use at exit: 617,890 bytes in 8,238 blocks +==24334== total heap usage: 46,057 allocs, 37,819 frees, 1,338,789,003 bytes allocated +==24334== +==24334== LEAK SUMMARY: +==24334== definitely lost: 0 bytes in 0 blocks +==24334== indirectly lost: 0 bytes in 0 blocks +==24334== possibly lost: 0 bytes in 0 blocks +==24334== still reachable: 24 bytes in 2 blocks +==24334== suppressed: 617,866 bytes in 8,236 blocks +==24334== Reachable blocks (those to which a pointer was found) are not shown. +==24334== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24334== +==24334== For lists of detected and suppressed errors, rerun with: -s +==24334== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestParallelWriterPerformance_valgrind.txt b/log-files/2025-02-12_21-17-58/TestParallelWriterPerformance_valgrind.txt new file mode 100644 index 000000000..f5fceeda5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestParallelWriterPerformance_valgrind.txt @@ -0,0 +1,73 @@ +==24341== Memcheck, a memory error detector +==24341== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24341== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24341== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info +==24341== Parent PID: 24057 +==24341== +==24341== +==24341== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24341== Open file descriptor 12: +==24341== at 0x60A507D: pipe (pipe.c:29) +==24341== by 0xAF1807D: ??? +==24341== by 0x8F3D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24341== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24341== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24341== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24341== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24341== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24341== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24341== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24341== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24341== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24341== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24341== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24341== +==24341== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24341== at 0x60A9A1C: __open_nocancel (open64_nocancel.c:39) +==24341== by 0x602DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24341== by 0x5D2B822: ??? +==24341== by 0x5D2B96F: ??? +==24341== by 0x8FE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24341== by 0x8FE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24341== by 0x8F98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24341== by 0x8F3D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24341== by 0x6655418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24341== by 0x65EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24341== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24341== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24341== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24341== by 0x11316C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24341== by 0x10F013: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24341== by 0x111202: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24341== by 0x1110FE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24341== by 0x111711: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24341== by 0x10D815: main (TestParallelWriterPerformance.cpp:18) +==24341== +==24341== Open file descriptor 158: +==24341== +==24341== +==24341== Open file descriptor 155: +==24341== +==24341== +==24341== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestParallelWriterPerformance_valgrind.txt +==24341== +==24341== +==24341== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24341== +==24341== +==24341== +==24341== HEAP SUMMARY: +==24341== in use at exit: 617,890 bytes in 8,238 blocks +==24341== total heap usage: 45,428 allocs, 37,190 frees, 1,338,449,355 bytes allocated +==24341== +==24341== LEAK SUMMARY: +==24341== definitely lost: 0 bytes in 0 blocks +==24341== indirectly lost: 0 bytes in 0 blocks +==24341== possibly lost: 0 bytes in 0 blocks +==24341== still reachable: 24 bytes in 2 blocks +==24341== suppressed: 617,866 bytes in 8,236 blocks +==24341== Reachable blocks (those to which a pointer was found) are not shown. +==24341== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24341== +==24341== For lists of detected and suppressed errors, rerun with: -s +==24341== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPdeSimulationTime_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPdeSimulationTime_valgrind.txt new file mode 100644 index 000000000..55fb54564 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPdeSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25313== Memcheck, a memory error detector +==25313== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25313== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25313== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeSimulationTime -malloc_debug -malloc_dump -memory_info +==25313== Parent PID: 24057 +==25313== +==25313== +==25313== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25313== Open file descriptor 12: +==25313== at 0x505107D: pipe (pipe.c:29) +==25313== by 0x104DE07D: ??? +==25313== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25313== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25313== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25313== by 0x7003D38: PetscInitialize (pinit.c:924) +==25313== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25313== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25313== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25313== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25313== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25313== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25313== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25313== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25313== +==25313== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25313== at 0x5055A1C: __open_nocancel (open64_nocancel.c:39) +==25313== by 0x4FD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25313== by 0x4CD7822: ??? +==25313== by 0x4CD796F: ??? +==25313== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25313== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25313== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25313== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25313== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25313== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25313== by 0x7003D38: PetscInitialize (pinit.c:924) +==25313== by 0x4C971D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25313== by 0x4C97227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25313== by 0x111E6A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25313== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25313== by 0x10FF34: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25313== by 0x10FE2F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25313== by 0x110443: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25313== by 0x10C415: main (TestPdeSimulationTime.cpp:18) +==25313== +==25313== Open file descriptor 158: +==25313== +==25313== +==25313== Open file descriptor 155: +==25313== +==25313== +==25313== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeSimulationTime_valgrind.txt +==25313== +==25313== +==25313== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25313== +==25313== +==25313== +==25313== HEAP SUMMARY: +==25313== in use at exit: 618,274 bytes in 8,238 blocks +==25313== total heap usage: 47,332 allocs, 39,094 frees, 1,338,384,939 bytes allocated +==25313== +==25313== LEAK SUMMARY: +==25313== definitely lost: 0 bytes in 0 blocks +==25313== indirectly lost: 0 bytes in 0 blocks +==25313== possibly lost: 0 bytes in 0 blocks +==25313== still reachable: 24 bytes in 2 blocks +==25313== suppressed: 618,250 bytes in 8,236 blocks +==25313== Reachable blocks (those to which a pointer was found) are not shown. +==25313== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25313== +==25313== For lists of detected and suppressed errors, rerun with: -s +==25313== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestPdeTestClasses_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPdeTestClasses_valgrind.txt new file mode 100644 index 000000000..8b9f34344 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPdeTestClasses_valgrind.txt @@ -0,0 +1,73 @@ +==25134== Memcheck, a memory error detector +==25134== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25134== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25134== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestPdeTestClasses -malloc_debug -malloc_dump -memory_info +==25134== Parent PID: 24057 +==25134== +==25134== +==25134== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25134== Open file descriptor 12: +==25134== at 0x6A4007D: pipe (pipe.c:29) +==25134== by 0x100CC07D: ??? +==25134== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25134== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25134== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25134== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==25134== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25134== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25134== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25134== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25134== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25134== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25134== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25134== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25134== +==25134== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25134== at 0x6A44A1C: __open_nocancel (open64_nocancel.c:39) +==25134== by 0x69C8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25134== by 0x659D822: ??? +==25134== by 0x659D96F: ??? +==25134== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25134== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25134== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25134== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25134== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25134== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25134== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==25134== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25134== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25134== by 0x13051E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25134== by 0x12BAF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25134== by 0x12E0E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25134== by 0x12DFE4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25134== by 0x12E5F7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25134== by 0x12A2F5: main (TestPdeTestClasses.cpp:18) +==25134== +==25134== Open file descriptor 158: +==25134== +==25134== +==25134== Open file descriptor 155: +==25134== +==25134== +==25134== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPdeTestClasses_valgrind.txt +==25134== +==25134== +==25134== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25134== +==25134== +==25134== +==25134== HEAP SUMMARY: +==25134== in use at exit: 618,242 bytes in 8,238 blocks +==25134== total heap usage: 47,537 allocs, 39,299 frees, 1,338,442,140 bytes allocated +==25134== +==25134== LEAK SUMMARY: +==25134== definitely lost: 0 bytes in 0 blocks +==25134== indirectly lost: 0 bytes in 0 blocks +==25134== possibly lost: 0 bytes in 0 blocks +==25134== still reachable: 24 bytes in 2 blocks +==25134== suppressed: 618,218 bytes in 8,236 blocks +==25134== Reachable blocks (those to which a pointer was found) are not shown. +==25134== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25134== +==25134== For lists of detected and suppressed errors, rerun with: -s +==25134== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPerElementWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPerElementWriter_valgrind.txt new file mode 100644 index 000000000..945fca5b5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPerElementWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24703== Memcheck, a memory error detector +==24703== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24703== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24703== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPerElementWriter -malloc_debug -malloc_dump -memory_info +==24703== Parent PID: 24057 +==24703== +==24703== +==24703== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24703== Open file descriptor 12: +==24703== at 0x811107D: pipe (pipe.c:29) +==24703== by 0x100CC07D: ??? +==24703== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24703== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24703== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24703== by 0x6686D38: PetscInitialize (pinit.c:924) +==24703== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24703== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24703== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24703== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24703== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24703== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24703== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24703== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24703== +==24703== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24703== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24703== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24703== by 0x791B822: ??? +==24703== by 0x791B96F: ??? +==24703== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24703== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24703== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24703== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24703== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24703== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24703== by 0x6686D38: PetscInitialize (pinit.c:924) +==24703== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24703== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24703== by 0x118F70: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24703== by 0x113759: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24703== by 0x115E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24703== by 0x115D21: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24703== by 0x116335: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24703== by 0x111E15: main (TestPerElementWriter.cpp:18) +==24703== +==24703== Open file descriptor 158: +==24703== +==24703== +==24703== Open file descriptor 155: +==24703== +==24703== +==24703== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPerElementWriter_valgrind.txt +==24703== +==24703== +==24703== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24703== +==24703== +==24703== +==24703== HEAP SUMMARY: +==24703== in use at exit: 618,242 bytes in 8,238 blocks +==24703== total heap usage: 52,931 allocs, 44,693 frees, 1,338,983,856 bytes allocated +==24703== +==24703== LEAK SUMMARY: +==24703== definitely lost: 0 bytes in 0 blocks +==24703== indirectly lost: 0 bytes in 0 blocks +==24703== possibly lost: 0 bytes in 0 blocks +==24703== still reachable: 24 bytes in 2 blocks +==24703== suppressed: 618,218 bytes in 8,236 blocks +==24703== Reachable blocks (those to which a pointer was found) are not shown. +==24703== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24703== +==24703== For lists of detected and suppressed errors, rerun with: -s +==24703== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt new file mode 100644 index 000000000..4799df3f0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt @@ -0,0 +1,73 @@ +==26243== Memcheck, a memory error detector +==26243== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26243== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info +==26243== Parent PID: 24057 +==26243== +==26243== +==26243== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26243== Open file descriptor 12: +==26243== at 0xF8E807D: pipe (pipe.c:29) +==26243== by 0x196B407D: ??? +==26243== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26243== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26243== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26243== by 0x10218D38: PetscInitialize (pinit.c:924) +==26243== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26243== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26243== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26243== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26243== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26243== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26243== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26243== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26243== +==26243== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26243== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==26243== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26243== by 0xF144822: ??? +==26243== by 0xF14496F: ??? +==26243== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26243== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26243== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26243== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26243== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26243== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26243== by 0x10218D38: PetscInitialize (pinit.c:924) +==26243== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26243== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26243== by 0x12B4BA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26243== by 0x1266B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26243== by 0x128CBE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26243== by 0x128BBA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26243== by 0x1291CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26243== by 0x124EB5: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18) +==26243== +==26243== Open file descriptor 158: +==26243== +==26243== +==26243== Open file descriptor 155: +==26243== +==26243== +==26243== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodeBasedCellPopulationParallelMethods_valgrind.txt +==26243== +==26243== +==26243== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26243== +==26243== +==26243== +==26243== HEAP SUMMARY: +==26243== in use at exit: 618,370 bytes in 8,239 blocks +==26243== total heap usage: 53,076 allocs, 44,837 frees, 1,338,903,003 bytes allocated +==26243== +==26243== LEAK SUMMARY: +==26243== definitely lost: 0 bytes in 0 blocks +==26243== indirectly lost: 0 bytes in 0 blocks +==26243== possibly lost: 0 bytes in 0 blocks +==26243== still reachable: 56 bytes in 3 blocks +==26243== suppressed: 618,314 bytes in 8,236 blocks +==26243== Reachable blocks (those to which a pointer was found) are not shown. +==26243== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26243== +==26243== For lists of detected and suppressed errors, rerun with: -s +==26243== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPeriodicNodesOnlyMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPeriodicNodesOnlyMesh_valgrind.txt new file mode 100644 index 000000000..b8e220739 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPeriodicNodesOnlyMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24611== Memcheck, a memory error detector +==24611== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24611== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24611== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestPeriodicNodesOnlyMesh -malloc_debug -malloc_dump -memory_info +==24611== Parent PID: 24057 +==24611== +==24611== +==24611== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24611== Open file descriptor 12: +==24611== at 0x6D8507D: pipe (pipe.c:29) +==24611== by 0x100CC07D: ??? +==24611== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24611== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x701FD38: PetscInitialize (pinit.c:924) +==24611== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24611== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24611== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24611== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24611== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24611== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24611== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24611== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24611== +==24611== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24611== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24611== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24611== by 0x659D822: ??? +==24611== by 0x659D96F: ??? +==24611== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24611== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24611== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24611== by 0x701FD38: PetscInitialize (pinit.c:924) +==24611== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24611== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24611== by 0x1300A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24611== by 0x12AC9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24611== by 0x12DA8C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24611== by 0x12D92C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24611== by 0x12DFC3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24611== by 0x1290C5: main (TestPeriodicNodesOnlyMesh.cpp:19) +==24611== +==24611== Open file descriptor 158: +==24611== +==24611== +==24611== Open file descriptor 155: +==24611== +==24611== +==24611== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPeriodicNodesOnlyMesh_valgrind.txt +==24611== +==24611== +==24611== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24611== +==24611== +==24611== +==24611== HEAP SUMMARY: +==24611== in use at exit: 618,242 bytes in 8,238 blocks +==24611== total heap usage: 57,988 allocs, 49,750 frees, 1,341,006,158 bytes allocated +==24611== +==24611== LEAK SUMMARY: +==24611== definitely lost: 0 bytes in 0 blocks +==24611== indirectly lost: 0 bytes in 0 blocks +==24611== possibly lost: 0 bytes in 0 blocks +==24611== still reachable: 24 bytes in 2 blocks +==24611== suppressed: 618,218 bytes in 8,236 blocks +==24611== Reachable blocks (those to which a pointer was found) are not shown. +==24611== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24611== +==24611== For lists of detected and suppressed errors, rerun with: -s +==24611== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPetscEvents_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPetscEvents_valgrind.txt new file mode 100644 index 000000000..b60b26933 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPetscEvents_valgrind.txt @@ -0,0 +1,73 @@ +==24233== Memcheck, a memory error detector +==24233== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24233== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24233== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info +==24233== Parent PID: 24057 +==24233== +==24233== +==24233== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24233== Open file descriptor 12: +==24233== at 0x603207D: pipe (pipe.c:29) +==24233== by 0xAEA507D: ??? +==24233== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24233== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24233== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24233== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24233== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24233== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24233== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24233== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24233== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24233== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24233== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24233== by 0x10B375: main (TestPetscEvents.cpp:18) +==24233== +==24233== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24233== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24233== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24233== by 0x5CB8822: ??? +==24233== by 0x5CB896F: ??? +==24233== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24233== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24233== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24233== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24233== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24233== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24233== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24233== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24233== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24233== by 0x110C5A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24233== by 0x10CB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24233== by 0x10ED24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24233== by 0x10EC20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24233== by 0x10F233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24233== by 0x10B375: main (TestPetscEvents.cpp:18) +==24233== +==24233== Open file descriptor 158: +==24233== +==24233== +==24233== Open file descriptor 155: +==24233== +==24233== +==24233== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscEvents_valgrind.txt +==24233== +==24233== +==24233== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24233== +==24233== +==24233== +==24233== HEAP SUMMARY: +==24233== in use at exit: 617,874 bytes in 8,238 blocks +==24233== total heap usage: 44,911 allocs, 36,673 frees, 1,338,159,836 bytes allocated +==24233== +==24233== LEAK SUMMARY: +==24233== definitely lost: 0 bytes in 0 blocks +==24233== indirectly lost: 0 bytes in 0 blocks +==24233== possibly lost: 0 bytes in 0 blocks +==24233== still reachable: 24 bytes in 2 blocks +==24233== suppressed: 617,850 bytes in 8,236 blocks +==24233== Reachable blocks (those to which a pointer was found) are not shown. +==24233== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24233== +==24233== For lists of detected and suppressed errors, rerun with: -s +==24233== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPetscMatTools_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPetscMatTools_valgrind.txt new file mode 100644 index 000000000..10ca3f88b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPetscMatTools_valgrind.txt @@ -0,0 +1,73 @@ +==24390== Memcheck, a memory error detector +==24390== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24390== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24390== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscMatTools -malloc_debug -malloc_dump -memory_info +==24390== Parent PID: 24057 +==24390== +==24390== +==24390== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24390== Open file descriptor 12: +==24390== at 0x60C107D: pipe (pipe.c:29) +==24390== by 0xAF3907D: ??? +==24390== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24390== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24390== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24390== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24390== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24390== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24390== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24390== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24390== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24390== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24390== +==24390== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24390== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24390== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24390== by 0x5D47822: ??? +==24390== by 0x5D4796F: ??? +==24390== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24390== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24390== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24390== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24390== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24390== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24390== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24390== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24390== by 0x114148: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24390== by 0x10FD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24390== by 0x1121C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24390== by 0x1120BF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24390== by 0x1126D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24390== by 0x10E555: main (TestPetscMatTools.cpp:18) +==24390== +==24390== Open file descriptor 158: +==24390== +==24390== +==24390== Open file descriptor 155: +==24390== +==24390== +==24390== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscMatTools_valgrind.txt +==24390== +==24390== +==24390== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24390== +==24390== +==24390== +==24390== HEAP SUMMARY: +==24390== in use at exit: 617,890 bytes in 8,238 blocks +==24390== total heap usage: 46,918 allocs, 38,680 frees, 1,338,408,467 bytes allocated +==24390== +==24390== LEAK SUMMARY: +==24390== definitely lost: 0 bytes in 0 blocks +==24390== indirectly lost: 0 bytes in 0 blocks +==24390== possibly lost: 0 bytes in 0 blocks +==24390== still reachable: 24 bytes in 2 blocks +==24390== suppressed: 617,866 bytes in 8,236 blocks +==24390== Reachable blocks (those to which a pointer was found) are not shown. +==24390== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24390== +==24390== For lists of detected and suppressed errors, rerun with: -s +==24390== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPetscSetup_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPetscSetup_valgrind.txt new file mode 100644 index 000000000..e2d73f01d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPetscSetup_valgrind.txt @@ -0,0 +1,73 @@ +==24253== Memcheck, a memory error detector +==24253== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24253== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24253== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscSetup -malloc_debug -malloc_dump -memory_info +==24253== Parent PID: 24057 +==24253== +==24253== +==24253== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24253== Open file descriptor 12: +==24253== at 0x603207D: pipe (pipe.c:29) +==24253== by 0xAEA507D: ??? +==24253== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24253== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24253== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24253== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24253== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24253== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24253== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24253== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24253== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24253== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24253== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24253== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24253== +==24253== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24253== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24253== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24253== by 0x5CB8822: ??? +==24253== by 0x5CB896F: ??? +==24253== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24253== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24253== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24253== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24253== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24253== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24253== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24253== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24253== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24253== by 0x113E58: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24253== by 0x10F48D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24253== by 0x111EFA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24253== by 0x111D9A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24253== by 0x112431: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24253== by 0x10D8B5: main (TestPetscSetup.cpp:19) +==24253== +==24253== Open file descriptor 158: +==24253== +==24253== +==24253== Open file descriptor 155: +==24253== +==24253== +==24253== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscSetup_valgrind.txt +==24253== +==24253== +==24253== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24253== +==24253== +==24253== +==24253== HEAP SUMMARY: +==24253== in use at exit: 617,874 bytes in 8,238 blocks +==24253== total heap usage: 45,266 allocs, 37,028 frees, 1,338,216,933 bytes allocated +==24253== +==24253== LEAK SUMMARY: +==24253== definitely lost: 0 bytes in 0 blocks +==24253== indirectly lost: 0 bytes in 0 blocks +==24253== possibly lost: 0 bytes in 0 blocks +==24253== still reachable: 24 bytes in 2 blocks +==24253== suppressed: 617,850 bytes in 8,236 blocks +==24253== Reachable blocks (those to which a pointer was found) are not shown. +==24253== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24253== +==24253== For lists of detected and suppressed errors, rerun with: -s +==24253== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPetscTools2_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPetscTools2_valgrind.txt new file mode 100644 index 000000000..b36dfd14d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPetscTools2_valgrind.txt @@ -0,0 +1,36 @@ +==24255== Memcheck, a memory error detector +==24255== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24255== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24255== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools2 -malloc_debug -malloc_dump -memory_info +==24255== Parent PID: 24057 +==24255== +==24255== +==24255== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24255== Open file descriptor 158: +==24255== +==24255== +==24255== Open file descriptor 155: +==24255== +==24255== +==24255== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools2_valgrind.txt +==24255== +==24255== +==24255== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24255== +==24255== +==24255== +==24255== HEAP SUMMARY: +==24255== in use at exit: 24 bytes in 2 blocks +==24255== total heap usage: 3,070 allocs, 3,068 frees, 350,757 bytes allocated +==24255== +==24255== LEAK SUMMARY: +==24255== definitely lost: 0 bytes in 0 blocks +==24255== indirectly lost: 0 bytes in 0 blocks +==24255== possibly lost: 0 bytes in 0 blocks +==24255== still reachable: 24 bytes in 2 blocks +==24255== suppressed: 0 bytes in 0 blocks +==24255== Reachable blocks (those to which a pointer was found) are not shown. +==24255== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24255== +==24255== For lists of detected and suppressed errors, rerun with: -s +==24255== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestPetscTools_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPetscTools_valgrind.txt new file mode 100644 index 000000000..cfb49450c --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPetscTools_valgrind.txt @@ -0,0 +1,73 @@ +==24254== Memcheck, a memory error detector +==24254== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24254== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24254== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info +==24254== Parent PID: 24057 +==24254== +==24254== +==24254== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24254== Open file descriptor 12: +==24254== at 0x616907D: pipe (pipe.c:29) +==24254== by 0xAEA507D: ??? +==24254== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24254== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24254== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24254== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24254== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24254== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24254== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24254== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24254== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24254== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24254== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24254== by 0x110FB5: main (TestPetscTools.cpp:19) +==24254== +==24254== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24254== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24254== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24254== by 0x5CB8822: ??? +==24254== by 0x5CB896F: ??? +==24254== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24254== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24254== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24254== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24254== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24254== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24254== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24254== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24254== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24254== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24254== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24254== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24254== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24254== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24254== by 0x110FB5: main (TestPetscTools.cpp:19) +==24254== +==24254== Open file descriptor 158: +==24254== +==24254== +==24254== Open file descriptor 155: +==24254== +==24254== +==24254== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt +==24254== +==24254== +==24254== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24254== +==24254== +==24254== +==24254== HEAP SUMMARY: +==24254== in use at exit: 617,874 bytes in 8,238 blocks +==24254== total heap usage: 47,877 allocs, 39,639 frees, 1,338,865,997 bytes allocated +==24254== +==24254== LEAK SUMMARY: +==24254== definitely lost: 0 bytes in 0 blocks +==24254== indirectly lost: 0 bytes in 0 blocks +==24254== possibly lost: 0 bytes in 0 blocks +==24254== still reachable: 24 bytes in 2 blocks +==24254== suppressed: 617,850 bytes in 8,236 blocks +==24254== Reachable blocks (those to which a pointer was found) are not shown. +==24254== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24254== +==24254== For lists of detected and suppressed errors, rerun with: -s +==24254== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPetscVecTools_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPetscVecTools_valgrind.txt new file mode 100644 index 000000000..25fe48c8a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPetscVecTools_valgrind.txt @@ -0,0 +1,73 @@ +==24391== Memcheck, a memory error detector +==24391== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24391== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24391== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPetscVecTools -malloc_debug -malloc_dump -memory_info +==24391== Parent PID: 24057 +==24391== +==24391== +==24391== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24391== Open file descriptor 12: +==24391== at 0x60C107D: pipe (pipe.c:29) +==24391== by 0xAF3907D: ??? +==24391== by 0x8A4B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24391== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24391== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24391== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24391== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24391== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24391== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24391== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24391== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24391== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24391== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24391== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24391== +==24391== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24391== at 0x60C5A1C: __open_nocancel (open64_nocancel.c:39) +==24391== by 0x6049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24391== by 0x5D47822: ??? +==24391== by 0x5D4796F: ??? +==24391== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24391== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24391== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24391== by 0x8A4B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24391== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24391== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24391== by 0x4AB2D38: PetscInitialize (pinit.c:924) +==24391== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24391== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24391== by 0x1121EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24391== by 0x10DD73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24391== by 0x11016A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24391== by 0x110065: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24391== by 0x110679: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24391== by 0x10C575: main (TestPetscVecTools.cpp:18) +==24391== +==24391== Open file descriptor 158: +==24391== +==24391== +==24391== Open file descriptor 155: +==24391== +==24391== +==24391== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscVecTools_valgrind.txt +==24391== +==24391== +==24391== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24391== +==24391== +==24391== +==24391== HEAP SUMMARY: +==24391== in use at exit: 617,890 bytes in 8,238 blocks +==24391== total heap usage: 45,463 allocs, 37,225 frees, 1,338,258,953 bytes allocated +==24391== +==24391== LEAK SUMMARY: +==24391== definitely lost: 0 bytes in 0 blocks +==24391== indirectly lost: 0 bytes in 0 blocks +==24391== possibly lost: 0 bytes in 0 blocks +==24391== still reachable: 24 bytes in 2 blocks +==24391== suppressed: 617,866 bytes in 8,236 blocks +==24391== Reachable blocks (those to which a pointer was found) are not shown. +==24391== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24391== +==24391== For lists of detected and suppressed errors, rerun with: -s +==24391== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPlaneStimulusCellFactory_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPlaneStimulusCellFactory_valgrind.txt new file mode 100644 index 000000000..fc7bbce93 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPlaneStimulusCellFactory_valgrind.txt @@ -0,0 +1,73 @@ +==43968== Memcheck, a memory error detector +==43968== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43968== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43968== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPlaneStimulusCellFactory -malloc_debug -malloc_dump -memory_info +==43968== Parent PID: 24057 +==43968== +==43968== +==43968== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43968== Open file descriptor 12: +==43968== at 0xBC1007D: pipe (pipe.c:29) +==43968== by 0x1432F07D: ??? +==43968== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43968== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43968== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43968== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43968== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43968== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43968== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43968== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43968== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43968== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43968== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43968== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43968== +==43968== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43968== at 0xBC14A1C: __open_nocancel (open64_nocancel.c:39) +==43968== by 0xBB98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43968== by 0xB400822: ??? +==43968== by 0xB40096F: ??? +==43968== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43968== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43968== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43968== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43968== by 0xB4FE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43968== by 0xB497D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43968== by 0xA16BD38: PetscInitialize (pinit.c:924) +==43968== by 0xA0421D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43968== by 0xA042227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43968== by 0x12063D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43968== by 0x11B96D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43968== by 0x11E212: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43968== by 0x11E0B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43968== by 0x11E749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43968== by 0x119D95: main (TestPlaneStimulusCellFactory.cpp:19) +==43968== +==43968== Open file descriptor 158: +==43968== +==43968== +==43968== Open file descriptor 155: +==43968== +==43968== +==43968== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPlaneStimulusCellFactory_valgrind.txt +==43968== +==43968== +==43968== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43968== +==43968== +==43968== +==43968== HEAP SUMMARY: +==43968== in use at exit: 618,354 bytes in 8,238 blocks +==43968== total heap usage: 82,004 allocs, 73,766 frees, 1,343,194,218 bytes allocated +==43968== +==43968== LEAK SUMMARY: +==43968== definitely lost: 0 bytes in 0 blocks +==43968== indirectly lost: 0 bytes in 0 blocks +==43968== possibly lost: 0 bytes in 0 blocks +==43968== still reachable: 24 bytes in 2 blocks +==43968== suppressed: 618,330 bytes in 8,236 blocks +==43968== Reachable blocks (those to which a pointer was found) are not shown. +==43968== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43968== +==43968== For lists of detected and suppressed errors, rerun with: -s +==43968== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPostProcessingWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPostProcessingWriter_valgrind.txt new file mode 100644 index 000000000..71c38bd6e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPostProcessingWriter_valgrind.txt @@ -0,0 +1,73 @@ +==43909== Memcheck, a memory error detector +==43909== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43909== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43909== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPostProcessingWriter -malloc_debug -malloc_dump -memory_info +==43909== Parent PID: 24057 +==43909== +==43909== +==43909== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43909== Open file descriptor 12: +==43909== at 0xBF7807D: pipe (pipe.c:29) +==43909== by 0x1432F07D: ??? +==43909== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43909== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43909== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43909== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43909== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43909== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43909== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43909== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43909== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43909== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43909== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43909== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43909== +==43909== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43909== at 0xBF7CA1C: __open_nocancel (open64_nocancel.c:39) +==43909== by 0xBF00BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43909== by 0xB8A1822: ??? +==43909== by 0xB8A196F: ??? +==43909== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43909== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43909== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43909== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43909== by 0xC2F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43909== by 0xC28ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43909== by 0xA60CD38: PetscInitialize (pinit.c:924) +==43909== by 0xA4E11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43909== by 0xA4E1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43909== by 0x127348: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43909== by 0x1210D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43909== by 0x123BD8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43909== by 0x123AD3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43909== by 0x1240E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43909== by 0x11F8D5: main (TestPostProcessingWriter.cpp:18) +==43909== +==43909== Open file descriptor 158: +==43909== +==43909== +==43909== Open file descriptor 155: +==43909== +==43909== +==43909== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPostProcessingWriter_valgrind.txt +==43909== +==43909== +==43909== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43909== +==43909== +==43909== +==43909== HEAP SUMMARY: +==43909== in use at exit: 618,761 bytes in 8,244 blocks +==43909== total heap usage: 10,863,092 allocs, 10,854,848 frees, 11,717,760,083 bytes allocated +==43909== +==43909== LEAK SUMMARY: +==43909== definitely lost: 0 bytes in 0 blocks +==43909== indirectly lost: 0 bytes in 0 blocks +==43909== possibly lost: 0 bytes in 0 blocks +==43909== still reachable: 24 bytes in 2 blocks +==43909== suppressed: 618,737 bytes in 8,242 blocks +==43909== Reachable blocks (those to which a pointer was found) are not shown. +==43909== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43909== +==43909== For lists of detected and suppressed errors, rerun with: -s +==43909== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 101 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestPottsBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..0702cbe4a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26245== Memcheck, a memory error detector +==26245== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26245== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26245== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26245== Parent PID: 24057 +==26245== +==26245== +==26245== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26245== Open file descriptor 12: +==26245== at 0x10DE107D: pipe (pipe.c:29) +==26245== by 0x196B407D: ??? +==26245== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26245== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26245== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26245== by 0xF292D38: PetscInitialize (pinit.c:924) +==26245== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26245== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26245== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26245== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26245== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26245== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26245== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26245== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26245== +==26245== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26245== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26245== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26245== by 0xF144822: ??? +==26245== by 0xF14496F: ??? +==26245== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26245== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26245== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26245== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26245== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26245== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26245== by 0xF292D38: PetscInitialize (pinit.c:924) +==26245== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26245== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26245== by 0x16AB57: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26245== by 0x162E49: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26245== by 0x166190: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26245== by 0x166030: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26245== by 0x1666C7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26245== by 0x161265: main (TestPottsBasedCellPopulation.cpp:19) +==26245== +==26245== Open file descriptor 158: +==26245== +==26245== +==26245== Open file descriptor 155: +==26245== +==26245== +==26245== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCellPopulation_valgrind.txt +==26245== +==26245== +==26245== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26245== +==26245== +==26245== +==26245== HEAP SUMMARY: +==26245== in use at exit: 618,370 bytes in 8,239 blocks +==26245== total heap usage: 74,954 allocs, 66,715 frees, 1,343,983,084 bytes allocated +==26245== +==26245== LEAK SUMMARY: +==26245== definitely lost: 0 bytes in 0 blocks +==26245== indirectly lost: 0 bytes in 0 blocks +==26245== possibly lost: 0 bytes in 0 blocks +==26245== still reachable: 56 bytes in 3 blocks +==26245== suppressed: 618,314 bytes in 8,236 blocks +==26245== Reachable blocks (those to which a pointer was found) are not shown. +==26245== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26245== +==26245== For lists of detected and suppressed errors, rerun with: -s +==26245== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPottsBasedCryptSimulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsBasedCryptSimulation_valgrind.txt new file mode 100644 index 000000000..e8173e3df --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsBasedCryptSimulation_valgrind.txt @@ -0,0 +1,73 @@ +==41053== Memcheck, a memory error detector +==41053== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41053== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41053== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestPottsBasedCryptSimulation -malloc_debug -malloc_dump -memory_info +==41053== Parent PID: 24057 +==41053== +==41053== +==41053== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41053== Open file descriptor 12: +==41053== at 0x110C107D: pipe (pipe.c:29) +==41053== by 0x1B37507D: ??? +==41053== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41053== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41053== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41053== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==41053== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41053== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41053== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41053== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41053== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41053== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41053== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41053== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==41053== +==41053== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41053== at 0x110C5A1C: __open_nocancel (open64_nocancel.c:39) +==41053== by 0x11049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41053== by 0x10A04822: ??? +==41053== by 0x10A0496F: ??? +==41053== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41053== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41053== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41053== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41053== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41053== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41053== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==41053== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41053== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41053== by 0x122076: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41053== by 0x11D6B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41053== by 0x11FAA6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41053== by 0x11F9A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41053== by 0x11FFB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41053== by 0x11BEB5: main (TestPottsBasedCryptSimulation.cpp:18) +==41053== +==41053== Open file descriptor 158: +==41053== +==41053== +==41053== Open file descriptor 155: +==41053== +==41053== +==41053== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsBasedCryptSimulation_valgrind.txt +==41053== +==41053== +==41053== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41053== +==41053== +==41053== +==41053== HEAP SUMMARY: +==41053== in use at exit: 618,393 bytes in 8,236 blocks +==41053== total heap usage: 46,840,659 allocs, 46,832,423 frees, 5,592,618,139 bytes allocated +==41053== +==41053== LEAK SUMMARY: +==41053== definitely lost: 0 bytes in 0 blocks +==41053== indirectly lost: 0 bytes in 0 blocks +==41053== possibly lost: 0 bytes in 0 blocks +==41053== still reachable: 136 bytes in 4 blocks +==41053== suppressed: 618,257 bytes in 8,232 blocks +==41053== Reachable blocks (those to which a pointer was found) are not shown. +==41053== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41053== +==41053== For lists of detected and suppressed errors, rerun with: -s +==41053== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestPottsElement_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsElement_valgrind.txt new file mode 100644 index 000000000..4ae1a5be1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsElement_valgrind.txt @@ -0,0 +1,73 @@ +==25878== Memcheck, a memory error detector +==25878== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25878== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25878== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsElement -malloc_debug -malloc_dump -memory_info +==25878== Parent PID: 24057 +==25878== +==25878== +==25878== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25878== Open file descriptor 12: +==25878== at 0xF4BC07D: pipe (pipe.c:29) +==25878== by 0x196B407D: ??? +==25878== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25878== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25878== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25878== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25878== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25878== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25878== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25878== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25878== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25878== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25878== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25878== by 0x113E95: main (TestPottsElement.cpp:19) +==25878== +==25878== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25878== at 0xF4C0A1C: __open_nocancel (open64_nocancel.c:39) +==25878== by 0xF444BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25878== by 0xF144822: ??? +==25878== by 0xF14496F: ??? +==25878== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25878== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25878== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25878== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25878== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25878== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25878== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25878== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25878== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25878== by 0x11A5B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25878== by 0x115A6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25878== by 0x118520: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25878== by 0x1183C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25878== by 0x118A57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25878== by 0x113E95: main (TestPottsElement.cpp:19) +==25878== +==25878== Open file descriptor 158: +==25878== +==25878== +==25878== Open file descriptor 155: +==25878== +==25878== +==25878== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsElement_valgrind.txt +==25878== +==25878== +==25878== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25878== +==25878== +==25878== +==25878== HEAP SUMMARY: +==25878== in use at exit: 618,338 bytes in 8,238 blocks +==25878== total heap usage: 53,130 allocs, 44,892 frees, 1,338,897,723 bytes allocated +==25878== +==25878== LEAK SUMMARY: +==25878== definitely lost: 0 bytes in 0 blocks +==25878== indirectly lost: 0 bytes in 0 blocks +==25878== possibly lost: 0 bytes in 0 blocks +==25878== still reachable: 24 bytes in 2 blocks +==25878== suppressed: 618,314 bytes in 8,236 blocks +==25878== Reachable blocks (those to which a pointer was found) are not shown. +==25878== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25878== +==25878== For lists of detected and suppressed errors, rerun with: -s +==25878== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPottsMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsMeshGenerator_valgrind.txt new file mode 100644 index 000000000..d4e136855 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==25930== Memcheck, a memory error detector +==25930== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25930== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25930== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshGenerator -malloc_debug -malloc_dump -memory_info +==25930== Parent PID: 24057 +==25930== +==25930== +==25930== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25930== Open file descriptor 12: +==25930== at 0xF4BC07D: pipe (pipe.c:29) +==25930== by 0x196B407D: ??? +==25930== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25930== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25930== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25930== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25930== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25930== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25930== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25930== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25930== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25930== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25930== +==25930== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25930== at 0xF4C0A1C: __open_nocancel (open64_nocancel.c:39) +==25930== by 0xF444BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25930== by 0xF144822: ??? +==25930== by 0xF14496F: ??? +==25930== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25930== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25930== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25930== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25930== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25930== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25930== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25930== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25930== by 0x118EF2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25930== by 0x1145AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25930== by 0x116DAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25930== by 0x116C4D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25930== by 0x1172E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25930== by 0x1129D5: main (TestPottsMeshGenerator.cpp:19) +==25930== +==25930== Open file descriptor 158: +==25930== +==25930== +==25930== Open file descriptor 155: +==25930== +==25930== +==25930== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshGenerator_valgrind.txt +==25930== +==25930== +==25930== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25930== +==25930== +==25930== +==25930== HEAP SUMMARY: +==25930== in use at exit: 618,338 bytes in 8,238 blocks +==25930== total heap usage: 154,743 allocs, 146,505 frees, 1,343,497,947 bytes allocated +==25930== +==25930== LEAK SUMMARY: +==25930== definitely lost: 0 bytes in 0 blocks +==25930== indirectly lost: 0 bytes in 0 blocks +==25930== possibly lost: 0 bytes in 0 blocks +==25930== still reachable: 24 bytes in 2 blocks +==25930== suppressed: 618,314 bytes in 8,236 blocks +==25930== Reachable blocks (those to which a pointer was found) are not shown. +==25930== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25930== +==25930== For lists of detected and suppressed errors, rerun with: -s +==25930== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPottsMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsMeshReader_valgrind.txt new file mode 100644 index 000000000..71cd6b168 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==25950== Memcheck, a memory error detector +==25950== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25950== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25950== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshReader -malloc_debug -malloc_dump -memory_info +==25950== Parent PID: 24057 +==25950== +==25950== +==25950== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25950== Open file descriptor 12: +==25950== at 0xF4BC07D: pipe (pipe.c:29) +==25950== by 0x196B407D: ??? +==25950== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25950== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25950== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25950== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25950== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25950== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25950== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25950== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25950== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25950== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25950== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25950== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25950== +==25950== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25950== at 0xF4C0A1C: __open_nocancel (open64_nocancel.c:39) +==25950== by 0xF444BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25950== by 0xF144822: ??? +==25950== by 0xF14496F: ??? +==25950== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25950== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25950== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25950== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25950== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25950== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25950== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25950== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25950== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25950== by 0x118F5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25950== by 0x11450D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25950== by 0x116FE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25950== by 0x116E80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25950== by 0x117517: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25950== by 0x112935: main (TestPottsMeshReader.cpp:19) +==25950== +==25950== Open file descriptor 158: +==25950== +==25950== +==25950== Open file descriptor 155: +==25950== +==25950== +==25950== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshReader_valgrind.txt +==25950== +==25950== +==25950== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25950== +==25950== +==25950== +==25950== HEAP SUMMARY: +==25950== in use at exit: 618,338 bytes in 8,238 blocks +==25950== total heap usage: 53,378 allocs, 45,140 frees, 1,339,154,357 bytes allocated +==25950== +==25950== LEAK SUMMARY: +==25950== definitely lost: 0 bytes in 0 blocks +==25950== indirectly lost: 0 bytes in 0 blocks +==25950== possibly lost: 0 bytes in 0 blocks +==25950== still reachable: 24 bytes in 2 blocks +==25950== suppressed: 618,314 bytes in 8,236 blocks +==25950== Reachable blocks (those to which a pointer was found) are not shown. +==25950== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25950== +==25950== For lists of detected and suppressed errors, rerun with: -s +==25950== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPottsMeshWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsMeshWriter_valgrind.txt new file mode 100644 index 000000000..de20220fe --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25952== Memcheck, a memory error detector +==25952== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25952== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25952== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMeshWriter -malloc_debug -malloc_dump -memory_info +==25952== Parent PID: 24057 +==25952== +==25952== +==25952== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25952== Open file descriptor 12: +==25952== at 0x10CB807D: pipe (pipe.c:29) +==25952== by 0x196B407D: ??? +==25952== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25952== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25952== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25952== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25952== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25952== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25952== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25952== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25952== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25952== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25952== +==25952== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25952== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==25952== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25952== by 0x104C2822: ??? +==25952== by 0x104C296F: ??? +==25952== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25952== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25952== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25952== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25952== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25952== by 0xF22DD38: PetscInitialize (pinit.c:924) +==25952== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25952== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25952== by 0x11BA1F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25952== by 0x1156B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25952== by 0x117F02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25952== by 0x117DFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25952== by 0x118411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25952== by 0x113EB5: main (TestPottsMeshWriter.cpp:18) +==25952== +==25952== Open file descriptor 158: +==25952== +==25952== +==25952== Open file descriptor 155: +==25952== +==25952== +==25952== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMeshWriter_valgrind.txt +==25952== +==25952== +==25952== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25952== +==25952== +==25952== +==25952== HEAP SUMMARY: +==25952== in use at exit: 618,338 bytes in 8,238 blocks +==25952== total heap usage: 54,559 allocs, 46,321 frees, 1,339,583,727 bytes allocated +==25952== +==25952== LEAK SUMMARY: +==25952== definitely lost: 0 bytes in 0 blocks +==25952== indirectly lost: 0 bytes in 0 blocks +==25952== possibly lost: 0 bytes in 0 blocks +==25952== still reachable: 24 bytes in 2 blocks +==25952== suppressed: 618,314 bytes in 8,236 blocks +==25952== Reachable blocks (those to which a pointer was found) are not shown. +==25952== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25952== +==25952== For lists of detected and suppressed errors, rerun with: -s +==25952== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPottsMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsMesh_valgrind.txt new file mode 100644 index 000000000..527940f98 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==25910== Memcheck, a memory error detector +==25910== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25910== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25910== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsMesh -malloc_debug -malloc_dump -memory_info +==25910== Parent PID: 24057 +==25910== +==25910== +==25910== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25910== Open file descriptor 12: +==25910== at 0xF4FE07D: pipe (pipe.c:29) +==25910== by 0x196B407D: ??? +==25910== by 0x14C6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25910== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25910== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25910== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25910== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25910== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25910== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25910== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25910== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25910== by 0x131665: main (TestPottsMesh.cpp:19) +==25910== +==25910== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25910== at 0xF502A1C: __open_nocancel (open64_nocancel.c:39) +==25910== by 0xF486BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25910== by 0xF144822: ??? +==25910== by 0xF14496F: ??? +==25910== by 0x14D146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25910== by 0x14D14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25910== by 0x14CCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25910== by 0x14C6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25910== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25910== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25910== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25910== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25910== by 0x1387B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25910== by 0x13323D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25910== by 0x136272: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25910== by 0x136112: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25910== by 0x1367A9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25910== by 0x131665: main (TestPottsMesh.cpp:19) +==25910== +==25910== Open file descriptor 158: +==25910== +==25910== +==25910== Open file descriptor 155: +==25910== +==25910== +==25910== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsMesh_valgrind.txt +==25910== +==25910== +==25910== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25910== +==25910== +==25910== +==25910== HEAP SUMMARY: +==25910== in use at exit: 618,338 bytes in 8,238 blocks +==25910== total heap usage: 79,313 allocs, 71,075 frees, 1,340,375,158 bytes allocated +==25910== +==25910== LEAK SUMMARY: +==25910== definitely lost: 0 bytes in 0 blocks +==25910== indirectly lost: 0 bytes in 0 blocks +==25910== possibly lost: 0 bytes in 0 blocks +==25910== still reachable: 24 bytes in 2 blocks +==25910== suppressed: 618,314 bytes in 8,236 blocks +==25910== Reachable blocks (those to which a pointer was found) are not shown. +==25910== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25910== +==25910== For lists of detected and suppressed errors, rerun with: -s +==25910== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPottsUpdateRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPottsUpdateRules_valgrind.txt new file mode 100644 index 000000000..b300aa68a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPottsUpdateRules_valgrind.txt @@ -0,0 +1,73 @@ +==26252== Memcheck, a memory error detector +==26252== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26252== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26252== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPottsUpdateRules -malloc_debug -malloc_dump -memory_info +==26252== Parent PID: 24057 +==26252== +==26252== +==26252== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26252== Open file descriptor 12: +==26252== at 0xF09707D: pipe (pipe.c:29) +==26252== by 0x196B507D: ??? +==26252== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26252== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26252== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26252== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26252== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26252== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26252== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26252== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26252== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26252== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26252== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26252== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26252== +==26252== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26252== at 0xF09BA1C: __open_nocancel (open64_nocancel.c:39) +==26252== by 0xF01FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26252== by 0xD4DF822: ??? +==26252== by 0xD4DF96F: ??? +==26252== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26252== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26252== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26252== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26252== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26252== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26252== by 0xD62FD38: PetscInitialize (pinit.c:924) +==26252== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26252== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26252== by 0x133C55: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26252== by 0x12C93D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26252== by 0x12F6BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26252== by 0x12F55E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26252== by 0x12FBF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26252== by 0x12AD65: main (TestPottsUpdateRules.cpp:19) +==26252== +==26252== Open file descriptor 158: +==26252== +==26252== +==26252== Open file descriptor 155: +==26252== +==26252== +==26252== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPottsUpdateRules_valgrind.txt +==26252== +==26252== +==26252== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26252== +==26252== +==26252== +==26252== HEAP SUMMARY: +==26252== in use at exit: 618,370 bytes in 8,239 blocks +==26252== total heap usage: 67,529 allocs, 59,290 frees, 1,339,984,456 bytes allocated +==26252== +==26252== LEAK SUMMARY: +==26252== definitely lost: 0 bytes in 0 blocks +==26252== indirectly lost: 0 bytes in 0 blocks +==26252== possibly lost: 0 bytes in 0 blocks +==26252== still reachable: 56 bytes in 3 blocks +==26252== suppressed: 618,314 bytes in 8,236 blocks +==26252== Reachable blocks (those to which a pointer was found) are not shown. +==26252== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26252== +==26252== For lists of detected and suppressed errors, rerun with: -s +==26252== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestProblemDefinitions_valgrind.txt b/log-files/2025-02-12_21-17-58/TestProblemDefinitions_valgrind.txt new file mode 100644 index 000000000..24cc064b7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestProblemDefinitions_valgrind.txt @@ -0,0 +1,73 @@ +==25396== Memcheck, a memory error detector +==25396== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25396== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25396== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info +==25396== Parent PID: 24057 +==25396== +==25396== +==25396== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25396== Open file descriptor 12: +==25396== at 0x6EC307D: pipe (pipe.c:29) +==25396== by 0x106DF07D: ??? +==25396== by 0xBFF44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25396== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25396== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25396== by 0x74FAD38: PetscInitialize (pinit.c:924) +==25396== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25396== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25396== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25396== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25396== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25396== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25396== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25396== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25396== +==25396== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25396== at 0x6EC7A1C: __open_nocancel (open64_nocancel.c:39) +==25396== by 0x6E4BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25396== by 0x671F822: ??? +==25396== by 0x671F96F: ??? +==25396== by 0xC0996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25396== by 0xC099938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25396== by 0xC04F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25396== by 0xBFF42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25396== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25396== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25396== by 0x74FAD38: PetscInitialize (pinit.c:924) +==25396== by 0x66DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25396== by 0x66DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25396== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25396== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25396== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25396== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25396== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25396== by 0x124F95: main (TestProblemDefinitions.cpp:19) +==25396== +==25396== Open file descriptor 158: +==25396== +==25396== +==25396== Open file descriptor 155: +==25396== +==25396== +==25396== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt +==25396== +==25396== +==25396== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25396== +==25396== +==25396== +==25396== HEAP SUMMARY: +==25396== in use at exit: 618,290 bytes in 8,238 blocks +==25396== total heap usage: 48,561 allocs, 40,323 frees, 1,338,503,916 bytes allocated +==25396== +==25396== LEAK SUMMARY: +==25396== definitely lost: 0 bytes in 0 blocks +==25396== indirectly lost: 0 bytes in 0 blocks +==25396== possibly lost: 0 bytes in 0 blocks +==25396== still reachable: 24 bytes in 2 blocks +==25396== suppressed: 618,266 bytes in 8,236 blocks +==25396== Reachable blocks (those to which a pointer was found) are not shown. +==25396== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25396== +==25396== For lists of detected and suppressed errors, rerun with: -s +==25396== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestProgressReporter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestProgressReporter_valgrind.txt new file mode 100644 index 000000000..2ee9d5d20 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestProgressReporter_valgrind.txt @@ -0,0 +1,73 @@ +==24256== Memcheck, a memory error detector +==24256== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24256== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24256== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestProgressReporter -malloc_debug -malloc_dump -memory_info +==24256== Parent PID: 24057 +==24256== +==24256== +==24256== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24256== Open file descriptor 12: +==24256== at 0x616907D: pipe (pipe.c:29) +==24256== by 0xAEA507D: ??? +==24256== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24256== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24256== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24256== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24256== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24256== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24256== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24256== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24256== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24256== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24256== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24256== by 0x110C35: main (TestProgressReporter.cpp:19) +==24256== +==24256== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24256== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24256== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24256== by 0x5CB8822: ??? +==24256== by 0x5CB896F: ??? +==24256== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24256== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24256== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24256== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24256== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24256== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24256== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24256== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24256== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24256== by 0x118E11: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24256== by 0x11280D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24256== by 0x1150D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24256== by 0x114F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24256== by 0x11560B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24256== by 0x110C35: main (TestProgressReporter.cpp:19) +==24256== +==24256== Open file descriptor 158: +==24256== +==24256== +==24256== Open file descriptor 155: +==24256== +==24256== +==24256== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProgressReporter_valgrind.txt +==24256== +==24256== +==24256== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24256== +==24256== +==24256== +==24256== HEAP SUMMARY: +==24256== in use at exit: 617,874 bytes in 8,238 blocks +==24256== total heap usage: 45,068 allocs, 36,830 frees, 1,338,282,710 bytes allocated +==24256== +==24256== LEAK SUMMARY: +==24256== definitely lost: 0 bytes in 0 blocks +==24256== indirectly lost: 0 bytes in 0 blocks +==24256== possibly lost: 0 bytes in 0 blocks +==24256== still reachable: 24 bytes in 2 blocks +==24256== suppressed: 617,850 bytes in 8,236 blocks +==24256== Reachable blocks (those to which a pointer was found) are not shown. +==24256== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24256== +==24256== For lists of detected and suppressed errors, rerun with: -s +==24256== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestPropagationPropertiesCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPropagationPropertiesCalculator_valgrind.txt new file mode 100644 index 000000000..34c6e0396 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPropagationPropertiesCalculator_valgrind.txt @@ -0,0 +1,36 @@ +==43930== Memcheck, a memory error detector +==43930== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43930== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43930== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPropagationPropertiesCalculator -malloc_debug -malloc_dump -memory_info +==43930== Parent PID: 24057 +==43930== +==43930== +==43930== FILE DESCRIPTORS: 7 open (3 std) at exit. +==43930== Open file descriptor 158: +==43930== +==43930== +==43930== Open file descriptor 155: +==43930== +==43930== +==43930== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPropagationPropertiesCalculator_valgrind.txt +==43930== +==43930== +==43930== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43930== +==43930== +==43930== +==43930== HEAP SUMMARY: +==43930== in use at exit: 24 bytes in 2 blocks +==43930== total heap usage: 14,997,641 allocs, 14,997,639 frees, 9,167,962,383 bytes allocated +==43930== +==43930== LEAK SUMMARY: +==43930== definitely lost: 0 bytes in 0 blocks +==43930== indirectly lost: 0 bytes in 0 blocks +==43930== possibly lost: 0 bytes in 0 blocks +==43930== still reachable: 24 bytes in 2 blocks +==43930== suppressed: 0 bytes in 0 blocks +==43930== Reachable blocks (those to which a pointer was found) are not shown. +==43930== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43930== +==43930== For lists of detected and suppressed errors, rerun with: -s +==43930== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestPseudoEcgCalculator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestPseudoEcgCalculator_valgrind.txt new file mode 100644 index 000000000..75db9e2a1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestPseudoEcgCalculator_valgrind.txt @@ -0,0 +1,73 @@ +==43938== Memcheck, a memory error detector +==43938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestPseudoEcgCalculator -malloc_debug -malloc_dump -memory_info +==43938== Parent PID: 24057 +==43938== +==43938== +==43938== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43938== Open file descriptor 12: +==43938== at 0xBB4C07D: pipe (pipe.c:29) +==43938== by 0x1432F07D: ??? +==43938== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43938== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43938== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43938== by 0xA1DED38: PetscInitialize (pinit.c:924) +==43938== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43938== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43938== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43938== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43938== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43938== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43938== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43938== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43938== +==43938== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43938== at 0xBB50A1C: __open_nocancel (open64_nocancel.c:39) +==43938== by 0xBAD4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43938== by 0xB473822: ??? +==43938== by 0xB47396F: ??? +==43938== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43938== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43938== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43938== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43938== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43938== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43938== by 0xA1DED38: PetscInitialize (pinit.c:924) +==43938== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43938== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43938== by 0x1233A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43938== by 0x11E38D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43938== by 0x120E26: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43938== by 0x120CC6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43938== by 0x12135D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43938== by 0x11C615: main (TestPseudoEcgCalculator.cpp:19) +==43938== +==43938== Open file descriptor 158: +==43938== +==43938== +==43938== Open file descriptor 155: +==43938== +==43938== +==43938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPseudoEcgCalculator_valgrind.txt +==43938== +==43938== +==43938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43938== +==43938== +==43938== +==43938== HEAP SUMMARY: +==43938== in use at exit: 618,834 bytes in 8,248 blocks +==43938== total heap usage: 282,960 allocs, 274,712 frees, 1,373,757,267 bytes allocated +==43938== +==43938== LEAK SUMMARY: +==43938== definitely lost: 0 bytes in 0 blocks +==43938== indirectly lost: 0 bytes in 0 blocks +==43938== possibly lost: 0 bytes in 0 blocks +==43938== still reachable: 24 bytes in 2 blocks +==43938== suppressed: 618,810 bytes in 8,246 blocks +==43938== Reachable blocks (those to which a pointer was found) are not shown. +==43938== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43938== +==43938== For lists of detected and suppressed errors, rerun with: -s +==43938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestQuadraticBasisFunction_valgrind.txt b/log-files/2025-02-12_21-17-58/TestQuadraticBasisFunction_valgrind.txt new file mode 100644 index 000000000..d2f294862 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestQuadraticBasisFunction_valgrind.txt @@ -0,0 +1,73 @@ +==25314== Memcheck, a memory error detector +==25314== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25314== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25314== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraticBasisFunction -malloc_debug -malloc_dump -memory_info +==25314== Parent PID: 24057 +==25314== +==25314== +==25314== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25314== Open file descriptor 12: +==25314== at 0x6CB407D: pipe (pipe.c:29) +==25314== by 0x104DE07D: ??? +==25314== by 0xC3264CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25314== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25314== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25314== by 0x7003D38: PetscInitialize (pinit.c:924) +==25314== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25314== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25314== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25314== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25314== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25314== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25314== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25314== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25314== +==25314== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25314== at 0x6CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25314== by 0x6C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25314== by 0x693C822: ??? +==25314== by 0x693C96F: ??? +==25314== by 0xC3CD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25314== by 0xC3CD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25314== by 0xC383922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25314== by 0xC3262DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25314== by 0x8728418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25314== by 0x86C1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25314== by 0x7003D38: PetscInitialize (pinit.c:924) +==25314== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25314== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25314== by 0x12166A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25314== by 0x11D0F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25314== by 0x11F5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25314== by 0x11F4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25314== by 0x11FB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25314== by 0x11B8F5: main (TestQuadraticBasisFunction.cpp:18) +==25314== +==25314== Open file descriptor 158: +==25314== +==25314== +==25314== Open file descriptor 155: +==25314== +==25314== +==25314== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticBasisFunction_valgrind.txt +==25314== +==25314== +==25314== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25314== +==25314== +==25314== +==25314== HEAP SUMMARY: +==25314== in use at exit: 618,274 bytes in 8,238 blocks +==25314== total heap usage: 47,376 allocs, 39,138 frees, 1,338,388,693 bytes allocated +==25314== +==25314== LEAK SUMMARY: +==25314== definitely lost: 0 bytes in 0 blocks +==25314== indirectly lost: 0 bytes in 0 blocks +==25314== possibly lost: 0 bytes in 0 blocks +==25314== still reachable: 24 bytes in 2 blocks +==25314== suppressed: 618,250 bytes in 8,236 blocks +==25314== Reachable blocks (those to which a pointer was found) are not shown. +==25314== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25314== +==25314== For lists of detected and suppressed errors, rerun with: -s +==25314== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestQuadraticMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestQuadraticMesh_valgrind.txt new file mode 100644 index 000000000..33f314a72 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestQuadraticMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24522== Memcheck, a memory error detector +==24522== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24522== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24522== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestQuadraticMesh -malloc_debug -malloc_dump -memory_info +==24522== Parent PID: 24057 +==24522== +==24522== +==24522== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24522== Open file descriptor 12: +==24522== at 0x6D8507D: pipe (pipe.c:29) +==24522== by 0x100CC07D: ??? +==24522== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24522== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24522== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24522== by 0x701FD38: PetscInitialize (pinit.c:924) +==24522== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24522== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24522== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24522== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24522== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24522== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24522== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24522== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24522== +==24522== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24522== at 0x6D89A1C: __open_nocancel (open64_nocancel.c:39) +==24522== by 0x6D0DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24522== by 0x659D822: ??? +==24522== by 0x659D96F: ??? +==24522== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24522== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24522== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24522== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24522== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24522== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24522== by 0x701FD38: PetscInitialize (pinit.c:924) +==24522== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24522== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24522== by 0x12FAA4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24522== by 0x12A6FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24522== by 0x12D700: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24522== by 0x12D5A0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24522== by 0x12DC37: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24522== by 0x128B25: main (TestQuadraticMesh.cpp:19) +==24522== +==24522== Open file descriptor 158: +==24522== +==24522== +==24522== Open file descriptor 155: +==24522== +==24522== +==24522== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraticMesh_valgrind.txt +==24522== +==24522== +==24522== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24522== +==24522== +==24522== +==24522== HEAP SUMMARY: +==24522== in use at exit: 618,242 bytes in 8,238 blocks +==24522== total heap usage: 721,069 allocs, 712,831 frees, 1,393,906,711 bytes allocated +==24522== +==24522== LEAK SUMMARY: +==24522== definitely lost: 0 bytes in 0 blocks +==24522== indirectly lost: 0 bytes in 0 blocks +==24522== possibly lost: 0 bytes in 0 blocks +==24522== still reachable: 24 bytes in 2 blocks +==24522== suppressed: 618,218 bytes in 8,236 blocks +==24522== Reachable blocks (those to which a pointer was found) are not shown. +==24522== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24522== +==24522== For lists of detected and suppressed errors, rerun with: -s +==24522== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 2270 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestQuadraturePointsGroup_valgrind.txt b/log-files/2025-02-12_21-17-58/TestQuadraturePointsGroup_valgrind.txt new file mode 100644 index 000000000..6fe5f3411 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestQuadraturePointsGroup_valgrind.txt @@ -0,0 +1,73 @@ +==25315== Memcheck, a memory error detector +==25315== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25315== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25315== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info +==25315== Parent PID: 24057 +==25315== +==25315== +==25315== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25315== Open file descriptor 12: +==25315== at 0x6FF907D: pipe (pipe.c:29) +==25315== by 0x104DE07D: ??? +==25315== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25315== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x7348D38: PetscInitialize (pinit.c:924) +==25315== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25315== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25315== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25315== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25315== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25315== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25315== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25315== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25315== +==25315== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25315== at 0x6FFDA1C: __open_nocancel (open64_nocancel.c:39) +==25315== by 0x6F81BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25315== by 0x693C822: ??? +==25315== by 0x693C96F: ??? +==25315== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25315== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25315== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25315== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25315== by 0x8A6D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x8A06D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25315== by 0x7348D38: PetscInitialize (pinit.c:924) +==25315== by 0x68FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25315== by 0x68FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25315== by 0x11DFB0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25315== by 0x11972D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25315== by 0x11BD38: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25315== by 0x11BBD8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25315== by 0x11C26F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25315== by 0x117B55: main (TestQuadraturePointsGroup.cpp:19) +==25315== +==25315== Open file descriptor 158: +==25315== +==25315== +==25315== Open file descriptor 155: +==25315== +==25315== +==25315== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestQuadraturePointsGroup_valgrind.txt +==25315== +==25315== +==25315== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25315== +==25315== +==25315== +==25315== HEAP SUMMARY: +==25315== in use at exit: 618,274 bytes in 8,238 blocks +==25315== total heap usage: 48,440 allocs, 40,202 frees, 1,338,878,888 bytes allocated +==25315== +==25315== LEAK SUMMARY: +==25315== definitely lost: 0 bytes in 0 blocks +==25315== indirectly lost: 0 bytes in 0 blocks +==25315== possibly lost: 0 bytes in 0 blocks +==25315== still reachable: 24 bytes in 2 blocks +==25315== suppressed: 618,250 bytes in 8,236 blocks +==25315== Reachable blocks (those to which a pointer was found) are not shown. +==25315== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25315== +==25315== For lists of detected and suppressed errors, rerun with: -s +==25315== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestRKC21IvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRKC21IvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..af549a234 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRKC21IvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25059== Memcheck, a memory error detector +==25059== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25059== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25059== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRKC21IvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25059== Parent PID: 24057 +==25059== +==25059== +==25059== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25059== Open file descriptor 12: +==25059== at 0x503907D: pipe (pipe.c:29) +==25059== by 0xB1E607D: ??? +==25059== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25059== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25059== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25059== by 0x5308D38: PetscInitialize (pinit.c:924) +==25059== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25059== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25059== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25059== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25059== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25059== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25059== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25059== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==25059== +==25059== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25059== at 0x503DA1C: __open_nocancel (open64_nocancel.c:39) +==25059== by 0x4FC1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25059== by 0x4B7C822: ??? +==25059== by 0x4B7C96F: ??? +==25059== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25059== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25059== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25059== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25059== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25059== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25059== by 0x5308D38: PetscInitialize (pinit.c:924) +==25059== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25059== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25059== by 0x127042: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25059== by 0x1218DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25059== by 0x1242C6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25059== by 0x124167: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25059== by 0x1247FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25059== by 0x11EEA5: main (TestRKC21IvpOdeSolver.cpp:19) +==25059== +==25059== Open file descriptor 158: +==25059== +==25059== +==25059== Open file descriptor 155: +==25059== +==25059== +==25059== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRKC21IvpOdeSolver_valgrind.txt +==25059== +==25059== +==25059== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25059== +==25059== +==25059== +==25059== HEAP SUMMARY: +==25059== in use at exit: 617,938 bytes in 8,238 blocks +==25059== total heap usage: 85,383 allocs, 77,145 frees, 1,339,006,127 bytes allocated +==25059== +==25059== LEAK SUMMARY: +==25059== definitely lost: 0 bytes in 0 blocks +==25059== indirectly lost: 0 bytes in 0 blocks +==25059== possibly lost: 0 bytes in 0 blocks +==25059== still reachable: 24 bytes in 2 blocks +==25059== suppressed: 617,914 bytes in 8,236 blocks +==25059== Reachable blocks (those to which a pointer was found) are not shown. +==25059== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25059== +==25059== For lists of detected and suppressed errors, rerun with: -s +==25059== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestRandomNumberGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRandomNumberGenerator_valgrind.txt new file mode 100644 index 000000000..a7238096e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRandomNumberGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24257== Memcheck, a memory error detector +==24257== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24257== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24257== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info +==24257== Parent PID: 24057 +==24257== +==24257== +==24257== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24257== Open file descriptor 12: +==24257== at 0x61AB07D: pipe (pipe.c:29) +==24257== by 0xAEA507D: ??? +==24257== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24257== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24257== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24257== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24257== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24257== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24257== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24257== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24257== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24257== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24257== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24257== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24257== +==24257== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24257== at 0x61AFA1C: __open_nocancel (open64_nocancel.c:39) +==24257== by 0x6133BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24257== by 0x493A822: ??? +==24257== by 0x493A96F: ??? +==24257== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24257== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24257== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24257== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24257== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24257== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24257== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24257== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24257== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24257== by 0x122A91: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24257== by 0x11DA0F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24257== by 0x1202C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24257== by 0x1201BD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24257== by 0x1207D1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24257== by 0x11C205: main (TestRandomNumberGenerator.cpp:18) +==24257== +==24257== Open file descriptor 158: +==24257== +==24257== +==24257== Open file descriptor 155: +==24257== +==24257== +==24257== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRandomNumberGenerator_valgrind.txt +==24257== +==24257== +==24257== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24257== +==24257== +==24257== +==24257== HEAP SUMMARY: +==24257== in use at exit: 620,426 bytes in 8,239 blocks +==24257== total heap usage: 45,035 allocs, 36,796 frees, 1,338,253,890 bytes allocated +==24257== +==24257== LEAK SUMMARY: +==24257== definitely lost: 0 bytes in 0 blocks +==24257== indirectly lost: 0 bytes in 0 blocks +==24257== possibly lost: 0 bytes in 0 blocks +==24257== still reachable: 2,576 bytes in 3 blocks +==24257== suppressed: 617,850 bytes in 8,236 blocks +==24257== Reachable blocks (those to which a pointer was found) are not shown. +==24257== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24257== +==24257== For lists of detected and suppressed errors, rerun with: -s +==24257== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestReplicatableVector_valgrind.txt b/log-files/2025-02-12_21-17-58/TestReplicatableVector_valgrind.txt new file mode 100644 index 000000000..aa215867e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestReplicatableVector_valgrind.txt @@ -0,0 +1,73 @@ +==24282== Memcheck, a memory error detector +==24282== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24282== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24282== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestReplicatableVector -malloc_debug -malloc_dump -memory_info +==24282== Parent PID: 24057 +==24282== +==24282== +==24282== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24282== Open file descriptor 12: +==24282== at 0x603207D: pipe (pipe.c:29) +==24282== by 0xAEA507D: ??? +==24282== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24282== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24282== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24282== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24282== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24282== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24282== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24282== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24282== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24282== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24282== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24282== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24282== +==24282== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24282== at 0x6036A1C: __open_nocancel (open64_nocancel.c:39) +==24282== by 0x5FBABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24282== by 0x5CB8822: ??? +==24282== by 0x5CB896F: ??? +==24282== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24282== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24282== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24282== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24282== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24282== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24282== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24282== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24282== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24282== by 0x1121BE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24282== by 0x10DD53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24282== by 0x110288: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24282== by 0x110183: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24282== by 0x110797: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24282== by 0x10C555: main (TestReplicatableVector.cpp:18) +==24282== +==24282== Open file descriptor 158: +==24282== +==24282== +==24282== Open file descriptor 155: +==24282== +==24282== +==24282== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestReplicatableVector_valgrind.txt +==24282== +==24282== +==24282== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24282== +==24282== +==24282== +==24282== HEAP SUMMARY: +==24282== in use at exit: 617,874 bytes in 8,238 blocks +==24282== total heap usage: 47,501 allocs, 39,263 frees, 1,338,612,975 bytes allocated +==24282== +==24282== LEAK SUMMARY: +==24282== definitely lost: 0 bytes in 0 blocks +==24282== indirectly lost: 0 bytes in 0 blocks +==24282== possibly lost: 0 bytes in 0 blocks +==24282== still reachable: 24 bytes in 2 blocks +==24282== suppressed: 617,850 bytes in 8,236 blocks +==24282== Reachable blocks (those to which a pointer was found) are not shown. +==24282== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24282== +==24282== For lists of detected and suppressed errors, rerun with: -s +==24282== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestRepresentativeImmersedBoundarySimulations_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRepresentativeImmersedBoundarySimulations_valgrind.txt new file mode 100644 index 000000000..223751461 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRepresentativeImmersedBoundarySimulations_valgrind.txt @@ -0,0 +1,73 @@ +==26560== Memcheck, a memory error detector +==26560== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26560== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26560== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRepresentativeImmersedBoundarySimulations -malloc_debug -malloc_dump -memory_info +==26560== Parent PID: 24057 +==26560== +==26560== +==26560== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26560== Open file descriptor 12: +==26560== at 0x10CB807D: pipe (pipe.c:29) +==26560== by 0x196B407D: ??? +==26560== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26560== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26560== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26560== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26560== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26560== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26560== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26560== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26560== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26560== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26560== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26560== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26560== +==26560== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26560== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==26560== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26560== by 0x104C2822: ??? +==26560== by 0x104C296F: ??? +==26560== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26560== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26560== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26560== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26560== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26560== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26560== by 0xF22DD38: PetscInitialize (pinit.c:924) +==26560== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26560== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26560== by 0x12B28D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26560== by 0x126793: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26560== by 0x128B70: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26560== by 0x128A6B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26560== by 0x12907F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26560== by 0x124F95: main (TestRepresentativeImmersedBoundarySimulations.cpp:18) +==26560== +==26560== Open file descriptor 158: +==26560== +==26560== +==26560== Open file descriptor 155: +==26560== +==26560== +==26560== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRepresentativeImmersedBoundarySimulations_valgrind.txt +==26560== +==26560== +==26560== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26560== +==26560== +==26560== +==26560== HEAP SUMMARY: +==26560== in use at exit: 618,297 bytes in 8,235 blocks +==26560== total heap usage: 2,315,231 allocs, 2,306,996 frees, 2,101,668,088 bytes allocated +==26560== +==26560== LEAK SUMMARY: +==26560== definitely lost: 0 bytes in 0 blocks +==26560== indirectly lost: 0 bytes in 0 blocks +==26560== possibly lost: 0 bytes in 0 blocks +==26560== still reachable: 56 bytes in 3 blocks +==26560== suppressed: 618,241 bytes in 8,232 blocks +==26560== Reachable blocks (those to which a pointer was found) are not shown. +==26560== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26560== +==26560== For lists of detected and suppressed errors, rerun with: -s +==26560== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestRestitutionStimuli_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRestitutionStimuli_valgrind.txt new file mode 100644 index 000000000..d9887c97a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRestitutionStimuli_valgrind.txt @@ -0,0 +1,73 @@ +==43983== Memcheck, a memory error detector +==43983== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43983== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43983== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info +==43983== Parent PID: 24057 +==43983== +==43983== +==43983== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43983== Open file descriptor 12: +==43983== at 0x9A6807D: pipe (pipe.c:29) +==43983== by 0x1432F07D: ??? +==43983== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43983== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43983== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43983== by 0x832BD38: PetscInitialize (pinit.c:924) +==43983== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43983== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43983== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43983== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43983== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43983== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43983== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43983== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43983== +==43983== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43983== at 0x9A6CA1C: __open_nocancel (open64_nocancel.c:39) +==43983== by 0x99F0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43983== by 0x81DB822: ??? +==43983== by 0x81DB96F: ??? +==43983== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43983== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43983== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43983== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43983== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43983== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43983== by 0x832BD38: PetscInitialize (pinit.c:924) +==43983== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43983== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43983== by 0x1227E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43983== by 0x11DA5D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43983== by 0x12049C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43983== by 0x12033C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43983== by 0x1209D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43983== by 0x11BE85: main (TestRestitutionStimuli.cpp:19) +==43983== +==43983== Open file descriptor 158: +==43983== +==43983== +==43983== Open file descriptor 155: +==43983== +==43983== +==43983== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRestitutionStimuli_valgrind.txt +==43983== +==43983== +==43983== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43983== +==43983== +==43983== +==43983== HEAP SUMMARY: +==43983== in use at exit: 618,354 bytes in 8,238 blocks +==43983== total heap usage: 49,257 allocs, 41,019 frees, 1,338,587,722 bytes allocated +==43983== +==43983== LEAK SUMMARY: +==43983== definitely lost: 0 bytes in 0 blocks +==43983== indirectly lost: 0 bytes in 0 blocks +==43983== possibly lost: 0 bytes in 0 blocks +==43983== still reachable: 24 bytes in 2 blocks +==43983== suppressed: 618,330 bytes in 8,236 blocks +==43983== Reachable blocks (those to which a pointer was found) are not shown. +==43983== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43983== +==43983== For lists of detected and suppressed errors, rerun with: -s +==43983== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt new file mode 100644 index 000000000..473bfeae6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25060== Memcheck, a memory error detector +==25060== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25060== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestRungeKuttaFehlbergIvpOdeSolver -malloc_debug -malloc_dump -memory_info +==25060== Parent PID: 24057 +==25060== +==25060== +==25060== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25060== Open file descriptor 12: +==25060== at 0x64F007D: pipe (pipe.c:29) +==25060== by 0xB1E407D: ??? +==25060== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25060== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25060== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25060== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==25060== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25060== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25060== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25060== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25060== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25060== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25060== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25060== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==25060== +==25060== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25060== at 0x64F4A1C: __open_nocancel (open64_nocancel.c:39) +==25060== by 0x6478BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25060== by 0x4B7C822: ??? +==25060== by 0x4B7C96F: ??? +==25060== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25060== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25060== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25060== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25060== by 0x603C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25060== by 0x5FD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25060== by 0x4CCCD38: PetscInitialize (pinit.c:924) +==25060== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25060== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25060== by 0x129E27: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25060== by 0x123D15: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25060== by 0x126B50: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25060== by 0x1269F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25060== by 0x127087: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25060== by 0x121085: main (TestRungeKuttaFehlbergIvpOdeSolver.cpp:19) +==25060== +==25060== Open file descriptor 158: +==25060== +==25060== +==25060== Open file descriptor 155: +==25060== +==25060== +==25060== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRungeKuttaFehlbergIvpOdeSolver_valgrind.txt +==25060== +==25060== +==25060== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25060== +==25060== +==25060== +==25060== HEAP SUMMARY: +==25060== in use at exit: 617,938 bytes in 8,238 blocks +==25060== total heap usage: 45,766 allocs, 37,528 frees, 1,338,245,263 bytes allocated +==25060== +==25060== LEAK SUMMARY: +==25060== definitely lost: 0 bytes in 0 blocks +==25060== indirectly lost: 0 bytes in 0 blocks +==25060== possibly lost: 0 bytes in 0 blocks +==25060== still reachable: 24 bytes in 2 blocks +==25060== suppressed: 617,914 bytes in 8,236 blocks +==25060== Reachable blocks (those to which a pointer was found) are not shown. +==25060== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25060== +==25060== For lists of detected and suppressed errors, rerun with: -s +==25060== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..16433b163 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40148== Memcheck, a memory error detector +==40148== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40148== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40148== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40148== Parent PID: 24057 +==40148== +==40148== +==40148== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40148== Open file descriptor 12: +==40148== at 0x10D9F07D: pipe (pipe.c:29) +==40148== by 0x196B407D: ??? +==40148== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40148== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40148== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40148== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40148== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40148== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40148== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40148== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40148== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40148== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40148== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40148== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==40148== +==40148== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40148== at 0x10DA3A1C: __open_nocancel (open64_nocancel.c:39) +==40148== by 0x10D27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40148== by 0x104C2822: ??? +==40148== by 0x104C296F: ??? +==40148== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40148== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40148== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40148== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40148== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40148== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40148== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40148== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40148== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40148== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40148== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40148== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40148== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40148== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40148== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) +==40148== +==40148== Open file descriptor 158: +==40148== +==40148== +==40148== Open file descriptor 155: +==40148== +==40148== +==40148== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt +==40148== +==40148== +==40148== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40148== +==40148== +==40148== +==40148== HEAP SUMMARY: +==40148== in use at exit: 618,297 bytes in 8,235 blocks +==40148== total heap usage: 11,260,183 allocs, 11,251,948 frees, 4,769,460,193 bytes allocated +==40148== +==40148== LEAK SUMMARY: +==40148== definitely lost: 0 bytes in 0 blocks +==40148== indirectly lost: 0 bytes in 0 blocks +==40148== possibly lost: 0 bytes in 0 blocks +==40148== still reachable: 56 bytes in 3 blocks +==40148== suppressed: 618,241 bytes in 8,232 blocks +==40148== Reachable blocks (those to which a pointer was found) are not shown. +==40148== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40148== +==40148== For lists of detected and suppressed errors, rerun with: -s +==40148== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt new file mode 100644 index 000000000..8cc095f74 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==41204== Memcheck, a memory error detector +==41204== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41204== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41204== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info +==41204== Parent PID: 24057 +==41204== +==41204== +==41204== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41204== Open file descriptor 12: +==41204== at 0x1257807D: pipe (pipe.c:29) +==41204== by 0x1B37607D: ??? +==41204== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41204== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41204== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41204== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41204== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41204== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41204== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41204== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41204== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41204== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41204== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41204== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==41204== +==41204== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41204== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==41204== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41204== by 0x11D82822: ??? +==41204== by 0x11D8296F: ??? +==41204== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41204== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41204== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41204== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41204== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41204== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41204== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41204== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41204== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41204== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41204== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41204== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41204== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41204== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41204== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) +==41204== +==41204== Open file descriptor 158: +==41204== +==41204== +==41204== Open file descriptor 155: +==41204== +==41204== +==41204== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt +==41204== +==41204== +==41204== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41204== +==41204== +==41204== +==41204== HEAP SUMMARY: +==41204== in use at exit: 618,313 bytes in 8,235 blocks +==41204== total heap usage: 16,190,852 allocs, 16,182,617 frees, 2,829,844,632 bytes allocated +==41204== +==41204== LEAK SUMMARY: +==41204== definitely lost: 0 bytes in 0 blocks +==41204== indirectly lost: 0 bytes in 0 blocks +==41204== possibly lost: 0 bytes in 0 blocks +==41204== still reachable: 56 bytes in 3 blocks +==41204== suppressed: 618,257 bytes in 8,232 blocks +==41204== Reachable blocks (those to which a pointer was found) are not shown. +==41204== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41204== +==41204== For lists of detected and suppressed errors, rerun with: -s +==41204== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..83940b52d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40180== Memcheck, a memory error detector +==40180== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40180== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40180== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40180== Parent PID: 24057 +==40180== +==40180== +==40180== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40180== Open file descriptor 12: +==40180== at 0xF80107D: pipe (pipe.c:29) +==40180== by 0x196B407D: ??? +==40180== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40180== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40180== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40180== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40180== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40180== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40180== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40180== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40180== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40180== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40180== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40180== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==40180== +==40180== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40180== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) +==40180== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40180== by 0xF144822: ??? +==40180== by 0xF14496F: ??? +==40180== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40180== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40180== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40180== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40180== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40180== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40180== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40180== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40180== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40180== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40180== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40180== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40180== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40180== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40180== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) +==40180== +==40180== Open file descriptor 158: +==40180== +==40180== +==40180== Open file descriptor 155: +==40180== +==40180== +==40180== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt +==40180== +==40180== +==40180== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40180== +==40180== +==40180== +==40180== HEAP SUMMARY: +==40180== in use at exit: 618,297 bytes in 8,235 blocks +==40180== total heap usage: 5,222,268 allocs, 5,214,033 frees, 1,778,261,781 bytes allocated +==40180== +==40180== LEAK SUMMARY: +==40180== definitely lost: 0 bytes in 0 blocks +==40180== indirectly lost: 0 bytes in 0 blocks +==40180== possibly lost: 0 bytes in 0 blocks +==40180== still reachable: 56 bytes in 3 blocks +==40180== suppressed: 618,241 bytes in 8,232 blocks +==40180== Reachable blocks (those to which a pointer was found) are not shown. +==40180== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40180== +==40180== For lists of detected and suppressed errors, rerun with: -s +==40180== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..ccbd70008 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40211== Memcheck, a memory error detector +==40211== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40211== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40211== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40211== Parent PID: 24057 +==40211== +==40211== +==40211== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40211== Open file descriptor 12: +==40211== at 0x10CB807D: pipe (pipe.c:29) +==40211== by 0x196B407D: ??? +==40211== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40211== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40211== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40211== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40211== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40211== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40211== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40211== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40211== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40211== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40211== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40211== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40211== +==40211== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40211== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40211== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40211== by 0x104C2822: ??? +==40211== by 0x104C296F: ??? +==40211== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40211== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40211== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40211== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40211== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40211== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40211== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40211== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40211== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40211== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40211== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40211== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40211== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40211== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40211== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) +==40211== +==40211== Open file descriptor 158: +==40211== +==40211== +==40211== Open file descriptor 155: +==40211== +==40211== +==40211== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt +==40211== +==40211== +==40211== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40211== +==40211== +==40211== +==40211== HEAP SUMMARY: +==40211== in use at exit: 618,313 bytes in 8,236 blocks +==40211== total heap usage: 2,563,996 allocs, 2,555,760 frees, 1,463,690,385 bytes allocated +==40211== +==40211== LEAK SUMMARY: +==40211== definitely lost: 0 bytes in 0 blocks +==40211== indirectly lost: 0 bytes in 0 blocks +==40211== possibly lost: 0 bytes in 0 blocks +==40211== still reachable: 72 bytes in 4 blocks +==40211== suppressed: 618,241 bytes in 8,232 blocks +==40211== Reachable blocks (those to which a pointer was found) are not shown. +==40211== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40211== +==40211== For lists of detected and suppressed errors, rerun with: -s +==40211== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..6a607a9f9 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40212== Memcheck, a memory error detector +==40212== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40212== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40212== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40212== Parent PID: 24057 +==40212== +==40212== +==40212== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40212== Open file descriptor 12: +==40212== at 0x10CB807D: pipe (pipe.c:29) +==40212== by 0x196B407D: ??? +==40212== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40212== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40212== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40212== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40212== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40212== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40212== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40212== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40212== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40212== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40212== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40212== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40212== +==40212== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40212== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40212== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40212== by 0x104C2822: ??? +==40212== by 0x104C296F: ??? +==40212== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40212== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40212== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40212== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40212== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40212== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40212== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40212== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40212== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40212== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40212== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40212== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40212== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40212== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40212== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) +==40212== +==40212== Open file descriptor 158: +==40212== +==40212== +==40212== Open file descriptor 155: +==40212== +==40212== +==40212== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt +==40212== +==40212== +==40212== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40212== +==40212== +==40212== +==40212== HEAP SUMMARY: +==40212== in use at exit: 618,297 bytes in 8,235 blocks +==40212== total heap usage: 654,977 allocs, 646,742 frees, 1,512,861,674 bytes allocated +==40212== +==40212== LEAK SUMMARY: +==40212== definitely lost: 0 bytes in 0 blocks +==40212== indirectly lost: 0 bytes in 0 blocks +==40212== possibly lost: 0 bytes in 0 blocks +==40212== still reachable: 56 bytes in 3 blocks +==40212== suppressed: 618,241 bytes in 8,232 blocks +==40212== Reachable blocks (those to which a pointer was found) are not shown. +==40212== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40212== +==40212== For lists of detected and suppressed errors, rerun with: -s +==40212== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..9e9c7fd7b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==41261== Memcheck, a memory error detector +==41261== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41261== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41261== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==41261== Parent PID: 24057 +==41261== +==41261== +==41261== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41261== Open file descriptor 12: +==41261== at 0x1257807D: pipe (pipe.c:29) +==41261== by 0x1B37607D: ??? +==41261== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41261== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41261== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41261== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41261== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41261== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41261== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41261== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41261== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41261== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==41261== +==41261== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41261== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==41261== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41261== by 0x11D82822: ??? +==41261== by 0x11D8296F: ??? +==41261== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41261== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41261== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41261== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41261== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41261== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41261== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41261== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41261== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41261== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41261== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41261== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41261== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41261== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) +==41261== +==41261== Open file descriptor 158: +==41261== +==41261== +==41261== Open file descriptor 155: +==41261== +==41261== +==41261== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt +==41261== +==41261== +==41261== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41261== +==41261== +==41261== +==41261== HEAP SUMMARY: +==41261== in use at exit: 618,386 bytes in 8,239 blocks +==41261== total heap usage: 1,754,085 allocs, 1,745,846 frees, 1,514,904,343 bytes allocated +==41261== +==41261== LEAK SUMMARY: +==41261== definitely lost: 0 bytes in 0 blocks +==41261== indirectly lost: 0 bytes in 0 blocks +==41261== possibly lost: 0 bytes in 0 blocks +==41261== still reachable: 56 bytes in 3 blocks +==41261== suppressed: 618,330 bytes in 8,236 blocks +==41261== Reachable blocks (those to which a pointer was found) are not shown. +==41261== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41261== +==41261== For lists of detected and suppressed errors, rerun with: -s +==41261== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestRunningMeshBasedSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningMeshBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..890c5f08d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningMeshBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40265== Memcheck, a memory error detector +==40265== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40265== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40265== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40265== Parent PID: 24057 +==40265== +==40265== +==40265== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40265== Open file descriptor 12: +==40265== at 0x10CB807D: pipe (pipe.c:29) +==40265== by 0x196B407D: ??? +==40265== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40265== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40265== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40265== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40265== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40265== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40265== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40265== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40265== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40265== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40265== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40265== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40265== +==40265== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40265== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40265== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40265== by 0x104C2822: ??? +==40265== by 0x104C296F: ??? +==40265== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40265== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40265== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40265== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40265== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40265== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40265== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40265== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40265== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40265== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40265== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40265== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40265== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40265== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40265== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) +==40265== +==40265== Open file descriptor 158: +==40265== +==40265== +==40265== Open file descriptor 155: +==40265== +==40265== +==40265== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt +==40265== +==40265== +==40265== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40265== +==40265== +==40265== +==40265== HEAP SUMMARY: +==40265== in use at exit: 618,297 bytes in 8,235 blocks +==40265== total heap usage: 3,498,766 allocs, 3,490,531 frees, 2,269,713,207 bytes allocated +==40265== +==40265== LEAK SUMMARY: +==40265== definitely lost: 0 bytes in 0 blocks +==40265== indirectly lost: 0 bytes in 0 blocks +==40265== possibly lost: 0 bytes in 0 blocks +==40265== still reachable: 56 bytes in 3 blocks +==40265== suppressed: 618,241 bytes in 8,232 blocks +==40265== Reachable blocks (those to which a pointer was found) are not shown. +==40265== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40265== +==40265== For lists of detected and suppressed errors, rerun with: -s +==40265== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestRunningNodeBasedSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningNodeBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..5360f931b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningNodeBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40303== Memcheck, a memory error detector +==40303== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40303== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40303== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40303== Parent PID: 24057 +==40303== +==40303== +==40303== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40303== Open file descriptor 12: +==40303== at 0xF8E807D: pipe (pipe.c:29) +==40303== by 0x196B407D: ??? +==40303== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40303== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40303== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40303== by 0x10218D38: PetscInitialize (pinit.c:924) +==40303== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40303== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40303== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40303== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40303== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40303== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40303== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40303== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40303== +==40303== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40303== at 0xF8ECA1C: __open_nocancel (open64_nocancel.c:39) +==40303== by 0xF870BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40303== by 0xF144822: ??? +==40303== by 0xF14496F: ??? +==40303== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40303== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40303== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40303== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40303== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40303== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40303== by 0x10218D38: PetscInitialize (pinit.c:924) +==40303== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40303== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40303== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40303== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40303== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40303== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40303== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40303== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) +==40303== +==40303== Open file descriptor 158: +==40303== +==40303== +==40303== Open file descriptor 155: +==40303== +==40303== +==40303== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt +==40303== +==40303== +==40303== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40303== +==40303== +==40303== +==40303== HEAP SUMMARY: +==40303== in use at exit: 618,370 bytes in 8,239 blocks +==40303== total heap usage: 721,858 allocs, 713,619 frees, 1,725,215,518 bytes allocated +==40303== +==40303== LEAK SUMMARY: +==40303== definitely lost: 0 bytes in 0 blocks +==40303== indirectly lost: 0 bytes in 0 blocks +==40303== possibly lost: 0 bytes in 0 blocks +==40303== still reachable: 56 bytes in 3 blocks +==40303== suppressed: 618,314 bytes in 8,236 blocks +==40303== Reachable blocks (those to which a pointer was found) are not shown. +==40303== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40303== +==40303== For lists of detected and suppressed errors, rerun with: -s +==40303== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestRunningPottsBasedSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningPottsBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..388b4d5e4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningPottsBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40304== Memcheck, a memory error detector +==40304== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40304== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40304== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40304== Parent PID: 24057 +==40304== +==40304== +==40304== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40304== Open file descriptor 12: +==40304== at 0xDB9E07D: pipe (pipe.c:29) +==40304== by 0x196B407D: ??? +==40304== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40304== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40304== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40304== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40304== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40304== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40304== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40304== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40304== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40304== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40304== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40304== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40304== +==40304== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40304== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40304== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40304== by 0xD4DF822: ??? +==40304== by 0xD4DF96F: ??? +==40304== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40304== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40304== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40304== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40304== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40304== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40304== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40304== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40304== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40304== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40304== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40304== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40304== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40304== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40304== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) +==40304== +==40304== Open file descriptor 158: +==40304== +==40304== +==40304== Open file descriptor 155: +==40304== +==40304== +==40304== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt +==40304== +==40304== +==40304== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40304== +==40304== +==40304== +==40304== HEAP SUMMARY: +==40304== in use at exit: 618,297 bytes in 8,235 blocks +==40304== total heap usage: 40,687,076 allocs, 40,678,841 frees, 3,830,317,198 bytes allocated +==40304== +==40304== LEAK SUMMARY: +==40304== definitely lost: 0 bytes in 0 blocks +==40304== indirectly lost: 0 bytes in 0 blocks +==40304== possibly lost: 0 bytes in 0 blocks +==40304== still reachable: 56 bytes in 3 blocks +==40304== suppressed: 618,241 bytes in 8,232 blocks +==40304== Reachable blocks (those to which a pointer was found) are not shown. +==40304== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40304== +==40304== For lists of detected and suppressed errors, rerun with: -s +==40304== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..2f7222c66 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40309== Memcheck, a memory error detector +==40309== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40309== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40309== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40309== Parent PID: 24057 +==40309== +==40309== +==40309== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40309== Open file descriptor 12: +==40309== at 0xFB9E07D: pipe (pipe.c:29) +==40309== by 0x196B407D: ??? +==40309== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40309== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40309== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40309== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40309== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40309== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40309== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40309== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40309== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40309== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40309== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40309== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40309== +==40309== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40309== at 0xFBA2A1C: __open_nocancel (open64_nocancel.c:39) +==40309== by 0xFB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40309== by 0xF4E1822: ??? +==40309== by 0xF4E196F: ??? +==40309== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40309== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40309== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40309== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40309== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40309== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40309== by 0x1012FD38: PetscInitialize (pinit.c:924) +==40309== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40309== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40309== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40309== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40309== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40309== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40309== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40309== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) +==40309== +==40309== Open file descriptor 158: +==40309== +==40309== +==40309== Open file descriptor 155: +==40309== +==40309== +==40309== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt +==40309== +==40309== +==40309== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40309== +==40309== +==40309== +==40309== HEAP SUMMARY: +==40309== in use at exit: 618,297 bytes in 8,235 blocks +==40309== total heap usage: 2,084,195 allocs, 2,075,960 frees, 1,674,711,058 bytes allocated +==40309== +==40309== LEAK SUMMARY: +==40309== definitely lost: 0 bytes in 0 blocks +==40309== indirectly lost: 0 bytes in 0 blocks +==40309== possibly lost: 0 bytes in 0 blocks +==40309== still reachable: 56 bytes in 3 blocks +==40309== suppressed: 618,241 bytes in 8,232 blocks +==40309== Reachable blocks (those to which a pointer was found) are not shown. +==40309== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40309== +==40309== For lists of detected and suppressed errors, rerun with: -s +==40309== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..07de11254 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==41264== Memcheck, a memory error detector +==41264== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41264== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41264== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==41264== Parent PID: 24057 +==41264== +==41264== +==41264== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41264== Open file descriptor 12: +==41264== at 0x1257807D: pipe (pipe.c:29) +==41264== by 0x1B37607D: ??? +==41264== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41264== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41264== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41264== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41264== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41264== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41264== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41264== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41264== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41264== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==41264== +==41264== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41264== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==41264== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41264== by 0x11D82822: ??? +==41264== by 0x11D8296F: ??? +==41264== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41264== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41264== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41264== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41264== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41264== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==41264== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41264== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41264== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==41264== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41264== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41264== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41264== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41264== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) +==41264== +==41264== Open file descriptor 158: +==41264== +==41264== +==41264== Open file descriptor 155: +==41264== +==41264== +==41264== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt +==41264== +==41264== +==41264== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41264== +==41264== +==41264== +==41264== HEAP SUMMARY: +==41264== in use at exit: 618,466 bytes in 8,240 blocks +==41264== total heap usage: 1,617,681 allocs, 1,609,441 frees, 1,458,368,713 bytes allocated +==41264== +==41264== LEAK SUMMARY: +==41264== definitely lost: 0 bytes in 0 blocks +==41264== indirectly lost: 0 bytes in 0 blocks +==41264== possibly lost: 0 bytes in 0 blocks +==41264== still reachable: 136 bytes in 4 blocks +==41264== suppressed: 618,330 bytes in 8,236 blocks +==41264== Reachable blocks (those to which a pointer was found) are not shown. +==41264== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41264== +==41264== For lists of detected and suppressed errors, rerun with: -s +==41264== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestRunningVertexBasedSimulationsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRunningVertexBasedSimulationsTutorial_valgrind.txt new file mode 100644 index 000000000..ae24f92a3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRunningVertexBasedSimulationsTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40365== Memcheck, a memory error detector +==40365== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40365== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40365== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info +==40365== Parent PID: 24057 +==40365== +==40365== +==40365== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40365== Open file descriptor 12: +==40365== at 0x10D9F07D: pipe (pipe.c:29) +==40365== by 0x196B407D: ??? +==40365== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40365== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40365== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40365== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40365== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40365== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40365== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40365== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40365== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40365== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40365== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40365== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40365== +==40365== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40365== at 0x10DA3A1C: __open_nocancel (open64_nocancel.c:39) +==40365== by 0x10D27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40365== by 0x104C2822: ??? +==40365== by 0x104C296F: ??? +==40365== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40365== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40365== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40365== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40365== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40365== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40365== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40365== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40365== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40365== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40365== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40365== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40365== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40365== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40365== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) +==40365== +==40365== Open file descriptor 158: +==40365== +==40365== +==40365== Open file descriptor 155: +==40365== +==40365== +==40365== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt +==40365== +==40365== +==40365== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40365== +==40365== +==40365== +==40365== HEAP SUMMARY: +==40365== in use at exit: 618,370 bytes in 8,239 blocks +==40365== total heap usage: 1,398,844 allocs, 1,390,605 frees, 1,398,429,201 bytes allocated +==40365== +==40365== LEAK SUMMARY: +==40365== definitely lost: 0 bytes in 0 blocks +==40365== indirectly lost: 0 bytes in 0 blocks +==40365== possibly lost: 0 bytes in 0 blocks +==40365== still reachable: 56 bytes in 3 blocks +==40365== suppressed: 618,314 bytes in 8,236 blocks +==40365== Reachable blocks (those to which a pointer was found) are not shown. +==40365== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40365== +==40365== For lists of detected and suppressed errors, rerun with: -s +==40365== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestRushLarsen_valgrind.txt b/log-files/2025-02-12_21-17-58/TestRushLarsen_valgrind.txt new file mode 100644 index 000000000..ca07d05b0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestRushLarsen_valgrind.txt @@ -0,0 +1,73 @@ +==43081== Memcheck, a memory error detector +==43081== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43081== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43081== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info +==43081== Parent PID: 24057 +==43081== +==43081== +==43081== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43081== Open file descriptor 12: +==43081== at 0x9C6807D: pipe (pipe.c:29) +==43081== by 0x1432F07D: ??? +==43081== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43081== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43081== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43081== by 0x8508D38: PetscInitialize (pinit.c:924) +==43081== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43081== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43081== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43081== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43081== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43081== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43081== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43081== by 0x114C35: main (TestRushLarsen.cpp:18) +==43081== +==43081== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43081== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==43081== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43081== by 0x979D822: ??? +==43081== by 0x979D96F: ??? +==43081== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43081== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43081== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43081== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43081== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43081== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43081== by 0x8508D38: PetscInitialize (pinit.c:924) +==43081== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43081== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43081== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43081== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43081== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43081== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43081== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43081== by 0x114C35: main (TestRushLarsen.cpp:18) +==43081== +==43081== Open file descriptor 158: +==43081== +==43081== +==43081== Open file descriptor 155: +==43081== +==43081== +==43081== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt +==43081== +==43081== +==43081== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43081== +==43081== +==43081== +==43081== HEAP SUMMARY: +==43081== in use at exit: 621,832 bytes in 8,242 blocks +==43081== total heap usage: 1,051,896 allocs, 1,043,654 frees, 1,778,852,596 bytes allocated +==43081== +==43081== LEAK SUMMARY: +==43081== definitely lost: 0 bytes in 0 blocks +==43081== indirectly lost: 0 bytes in 0 blocks +==43081== possibly lost: 0 bytes in 0 blocks +==43081== still reachable: 3,575 bytes in 10 blocks +==43081== suppressed: 618,257 bytes in 8,232 blocks +==43081== Reachable blocks (those to which a pointer was found) are not shown. +==43081== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43081== +==43081== For lists of detected and suppressed errors, rerun with: -s +==43081== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestShovingCaBasedDivisionRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestShovingCaBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..f3d65c27f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestShovingCaBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==40646== Memcheck, a memory error detector +==40646== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40646== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40646== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==40646== Parent PID: 24057 +==40646== +==40646== +==40646== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40646== Open file descriptor 12: +==40646== at 0x1095707D: pipe (pipe.c:29) +==40646== by 0x1B37607D: ??? +==40646== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40646== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40646== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40646== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40646== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40646== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40646== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40646== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40646== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40646== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40646== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40646== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40646== +==40646== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40646== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40646== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40646== by 0xEDA1822: ??? +==40646== by 0xEDA196F: ??? +==40646== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40646== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40646== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40646== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40646== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40646== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40646== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40646== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40646== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40646== by 0x12E1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40646== by 0x128F3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40646== by 0x12B950: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40646== by 0x12B7F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40646== by 0x12BE87: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40646== by 0x127365: main (TestShovingCaBasedDivisionRules.cpp:19) +==40646== +==40646== Open file descriptor 158: +==40646== +==40646== +==40646== Open file descriptor 155: +==40646== +==40646== +==40646== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestShovingCaBasedDivisionRules_valgrind.txt +==40646== +==40646== +==40646== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40646== +==40646== +==40646== +==40646== HEAP SUMMARY: +==40646== in use at exit: 618,402 bytes in 8,240 blocks +==40646== total heap usage: 57,801 allocs, 49,561 frees, 1,339,211,619 bytes allocated +==40646== +==40646== LEAK SUMMARY: +==40646== definitely lost: 0 bytes in 0 blocks +==40646== indirectly lost: 0 bytes in 0 blocks +==40646== possibly lost: 0 bytes in 0 blocks +==40646== still reachable: 72 bytes in 4 blocks +==40646== suppressed: 618,330 bytes in 8,236 blocks +==40646== Reachable blocks (those to which a pointer was found) are not shown. +==40646== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40646== +==40646== For lists of detected and suppressed errors, rerun with: -s +==40646== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleCellCycleModelsForCrypt_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleCellCycleModelsForCrypt_valgrind.txt new file mode 100644 index 000000000..33757fe40 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleCellCycleModelsForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40431== Memcheck, a memory error detector +==40431== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40431== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40431== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info +==40431== Parent PID: 24057 +==40431== +==40431== +==40431== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40431== Open file descriptor 12: +==40431== at 0x1095707D: pipe (pipe.c:29) +==40431== by 0x1B37607D: ??? +==40431== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40431== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40431== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40431== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40431== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40431== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40431== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40431== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40431== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40431== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40431== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40431== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40431== +==40431== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40431== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40431== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40431== by 0xEDA1822: ??? +==40431== by 0xEDA196F: ??? +==40431== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40431== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40431== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40431== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40431== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40431== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40431== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40431== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40431== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40431== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40431== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40431== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40431== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40431== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40431== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) +==40431== +==40431== Open file descriptor 158: +==40431== +==40431== +==40431== Open file descriptor 155: +==40431== +==40431== +==40431== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt +==40431== +==40431== +==40431== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40431== +==40431== +==40431== +==40431== HEAP SUMMARY: +==40431== in use at exit: 618,450 bytes in 8,240 blocks +==40431== total heap usage: 754,742 allocs, 746,502 frees, 1,372,781,791 bytes allocated +==40431== +==40431== LEAK SUMMARY: +==40431== definitely lost: 0 bytes in 0 blocks +==40431== indirectly lost: 0 bytes in 0 blocks +==40431== possibly lost: 0 bytes in 0 blocks +==40431== still reachable: 120 bytes in 4 blocks +==40431== suppressed: 618,330 bytes in 8,236 blocks +==40431== Reachable blocks (those to which a pointer was found) are not shown. +==40431== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40431== +==40431== For lists of detected and suppressed errors, rerun with: -s +==40431== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleCellCycleModels_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleCellCycleModels_valgrind.txt new file mode 100644 index 000000000..60b7980aa --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleCellCycleModels_valgrind.txt @@ -0,0 +1,73 @@ +==25555== Memcheck, a memory error detector +==25555== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25555== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25555== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info +==25555== Parent PID: 24057 +==25555== +==25555== +==25555== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25555== Open file descriptor 12: +==25555== at 0xED5007D: pipe (pipe.c:29) +==25555== by 0x196B507D: ??? +==25555== by 0x13C084CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25555== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25555== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25555== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25555== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25555== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25555== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25555== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25555== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25555== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25555== +==25555== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25555== at 0xED54A1C: __open_nocancel (open64_nocancel.c:39) +==25555== by 0xECD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25555== by 0xD4DF822: ??? +==25555== by 0xD4DF96F: ??? +==25555== by 0x13CAD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25555== by 0x13CAD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25555== by 0x13C63922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25555== by 0x13C082DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25555== by 0xE99F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0xE938D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25555== by 0xD62FD38: PetscInitialize (pinit.c:924) +==25555== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25555== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25555== by 0x137FA7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25555== by 0x13098F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25555== by 0x133A5C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25555== by 0x1338FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25555== by 0x133F93: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25555== by 0x12D2C5: main (TestSimpleCellCycleModels.cpp:19) +==25555== +==25555== Open file descriptor 158: +==25555== +==25555== +==25555== Open file descriptor 155: +==25555== +==25555== +==25555== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModels_valgrind.txt +==25555== +==25555== +==25555== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25555== +==25555== +==25555== +==25555== HEAP SUMMARY: +==25555== in use at exit: 618,402 bytes in 8,240 blocks +==25555== total heap usage: 78,951 allocs, 70,711 frees, 1,342,261,689 bytes allocated +==25555== +==25555== LEAK SUMMARY: +==25555== definitely lost: 0 bytes in 0 blocks +==25555== indirectly lost: 0 bytes in 0 blocks +==25555== possibly lost: 0 bytes in 0 blocks +==25555== still reachable: 88 bytes in 4 blocks +==25555== suppressed: 618,314 bytes in 8,236 blocks +==25555== Reachable blocks (those to which a pointer was found) are not shown. +==25555== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25555== +==25555== For lists of detected and suppressed errors, rerun with: -s +==25555== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleDataWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleDataWriter_valgrind.txt new file mode 100644 index 000000000..fa5d3cfb2 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleDataWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24348== Memcheck, a memory error detector +==24348== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24348== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24348== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestSimpleDataWriter -malloc_debug -malloc_dump -memory_info +==24348== Parent PID: 24057 +==24348== +==24348== +==24348== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24348== Open file descriptor 12: +==24348== at 0x61DC07D: pipe (pipe.c:29) +==24348== by 0xAF1807D: ??? +==24348== by 0x8A2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24348== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24348== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24348== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24348== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24348== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24348== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24348== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24348== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24348== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24348== +==24348== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24348== at 0x61E0A1C: __open_nocancel (open64_nocancel.c:39) +==24348== by 0x6164BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24348== by 0x5D2B822: ??? +==24348== by 0x5D2B96F: ??? +==24348== by 0x8AD66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24348== by 0x8AD6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24348== by 0x8A8C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24348== by 0x8A2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24348== by 0x5E2B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x5DC4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24348== by 0x4A96D38: PetscInitialize (pinit.c:924) +==24348== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24348== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24348== by 0x11CE43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24348== by 0x11682D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24348== by 0x119106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24348== by 0x118FA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24348== by 0x11963D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24348== by 0x114C55: main (TestSimpleDataWriter.cpp:19) +==24348== +==24348== Open file descriptor 158: +==24348== +==24348== +==24348== Open file descriptor 155: +==24348== +==24348== +==24348== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleDataWriter_valgrind.txt +==24348== +==24348== +==24348== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24348== +==24348== +==24348== +==24348== HEAP SUMMARY: +==24348== in use at exit: 617,890 bytes in 8,238 blocks +==24348== total heap usage: 45,179 allocs, 36,941 frees, 1,338,361,334 bytes allocated +==24348== +==24348== LEAK SUMMARY: +==24348== definitely lost: 0 bytes in 0 blocks +==24348== indirectly lost: 0 bytes in 0 blocks +==24348== possibly lost: 0 bytes in 0 blocks +==24348== still reachable: 24 bytes in 2 blocks +==24348== suppressed: 617,866 bytes in 8,236 blocks +==24348== Reachable blocks (those to which a pointer was found) are not shown. +==24348== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24348== +==24348== For lists of detected and suppressed errors, rerun with: -s +==24348== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleImpedanceProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleImpedanceProblem_valgrind.txt new file mode 100644 index 000000000..d7a957b38 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleImpedanceProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41321== Memcheck, a memory error detector +==41321== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41321== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41321== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info +==41321== Parent PID: 24057 +==41321== +==41321== +==41321== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41321== Open file descriptor 12: +==41321== at 0x6D7A07D: pipe (pipe.c:29) +==41321== by 0x107AC07D: ??? +==41321== by 0xC0204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41321== by 0x82F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41321== by 0x828ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41321== by 0x6F85D38: PetscInitialize (pinit.c:924) +==41321== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41321== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41321== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41321== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41321== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41321== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41321== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41321== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==41321== +==41321== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41321== at 0x6D7EA1C: __open_nocancel (open64_nocancel.c:39) +==41321== by 0x6D02BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41321== by 0x66BD822: ??? +==41321== by 0x66BD96F: ??? +==41321== by 0xC0C56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41321== by 0xC0C5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41321== by 0xC07B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41321== by 0xC0202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41321== by 0x82F5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41321== by 0x828ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41321== by 0x6F85D38: PetscInitialize (pinit.c:924) +==41321== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41321== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41321== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41321== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41321== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41321== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41321== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41321== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) +==41321== +==41321== Open file descriptor 158: +==41321== +==41321== +==41321== Open file descriptor 155: +==41321== +==41321== +==41321== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt +==41321== +==41321== +==41321== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41321== +==41321== +==41321== +==41321== HEAP SUMMARY: +==41321== in use at exit: 618,265 bytes in 8,234 blocks +==41321== total heap usage: 7,105,340 allocs, 7,097,106 frees, 1,601,381,772 bytes allocated +==41321== +==41321== LEAK SUMMARY: +==41321== definitely lost: 0 bytes in 0 blocks +==41321== indirectly lost: 0 bytes in 0 blocks +==41321== possibly lost: 0 bytes in 0 blocks +==41321== still reachable: 24 bytes in 2 blocks +==41321== suppressed: 618,241 bytes in 8,232 blocks +==41321== Reachable blocks (those to which a pointer was found) are not shown. +==41321== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41321== +==41321== For lists of detected and suppressed errors, rerun with: -s +==41321== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleLinearEllipticSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleLinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..a744b9572 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleLinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25160== Memcheck, a memory error detector +==25160== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25160== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25160== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25160== Parent PID: 24057 +==25160== +==25160== +==25160== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25160== Open file descriptor 12: +==25160== at 0x84EF07D: pipe (pipe.c:29) +==25160== by 0x104DE07D: ??? +==25160== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25160== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25160== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25160== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25160== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25160== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25160== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25160== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25160== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25160== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25160== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25160== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25160== +==25160== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25160== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25160== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25160== by 0x7D49822: ??? +==25160== by 0x7D4996F: ??? +==25160== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25160== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25160== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25160== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25160== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25160== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25160== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25160== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25160== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25160== by 0x19C0B0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25160== by 0x1968F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25160== by 0x1998A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25160== by 0x19979F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25160== by 0x199DB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25160== by 0x1950F5: main (TestSimpleLinearEllipticSolver.cpp:18) +==25160== +==25160== Open file descriptor 158: +==25160== +==25160== +==25160== Open file descriptor 155: +==25160== +==25160== +==25160== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearEllipticSolver_valgrind.txt +==25160== +==25160== +==25160== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25160== +==25160== +==25160== +==25160== HEAP SUMMARY: +==25160== in use at exit: 618,274 bytes in 8,238 blocks +==25160== total heap usage: 210,201 allocs, 201,963 frees, 1,356,096,869 bytes allocated +==25160== +==25160== LEAK SUMMARY: +==25160== definitely lost: 0 bytes in 0 blocks +==25160== indirectly lost: 0 bytes in 0 blocks +==25160== possibly lost: 0 bytes in 0 blocks +==25160== still reachable: 24 bytes in 2 blocks +==25160== suppressed: 618,250 bytes in 8,236 blocks +==25160== Reachable blocks (those to which a pointer was found) are not shown. +==25160== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25160== +==25160== For lists of detected and suppressed errors, rerun with: -s +==25160== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleLinearParabolicSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleLinearParabolicSolver_valgrind.txt new file mode 100644 index 000000000..44963dc6b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleLinearParabolicSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25149== Memcheck, a memory error detector +==25149== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25149== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25149== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleLinearParabolicSolver -malloc_debug -malloc_dump -memory_info +==25149== Parent PID: 24057 +==25149== +==25149== +==25149== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25149== Open file descriptor 12: +==25149== at 0x856207D: pipe (pipe.c:29) +==25149== by 0x104DE07D: ??? +==25149== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25149== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25149== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25149== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25149== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25149== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25149== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25149== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25149== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25149== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25149== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25149== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25149== +==25149== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25149== at 0x8566A1C: __open_nocancel (open64_nocancel.c:39) +==25149== by 0x84EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25149== by 0x7DBC822: ??? +==25149== by 0x7DBC96F: ??? +==25149== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25149== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25149== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25149== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25149== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25149== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25149== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25149== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25149== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25149== by 0x1553A8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25149== by 0x14FA6D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25149== by 0x152E08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25149== by 0x152CA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25149== by 0x15333F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25149== by 0x14DE95: main (TestSimpleLinearParabolicSolver.cpp:19) +==25149== +==25149== Open file descriptor 158: +==25149== +==25149== +==25149== Open file descriptor 155: +==25149== +==25149== +==25149== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleLinearParabolicSolver_valgrind.txt +==25149== +==25149== +==25149== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25149== +==25149== +==25149== +==25149== HEAP SUMMARY: +==25149== in use at exit: 618,754 bytes in 8,248 blocks +==25149== total heap usage: 370,033 allocs, 361,785 frees, 1,429,167,478 bytes allocated +==25149== +==25149== LEAK SUMMARY: +==25149== definitely lost: 0 bytes in 0 blocks +==25149== indirectly lost: 0 bytes in 0 blocks +==25149== possibly lost: 0 bytes in 0 blocks +==25149== still reachable: 24 bytes in 2 blocks +==25149== suppressed: 618,730 bytes in 8,246 blocks +==25149== Reachable blocks (those to which a pointer was found) are not shown. +==25149== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25149== +==25149== For lists of detected and suppressed errors, rerun with: -s +==25149== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 43 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleNonlinearEllipticSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleNonlinearEllipticSolver_valgrind.txt new file mode 100644 index 000000000..15812f207 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleNonlinearEllipticSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25167== Memcheck, a memory error detector +==25167== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25167== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25167== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSimpleNonlinearEllipticSolver -malloc_debug -malloc_dump -memory_info +==25167== Parent PID: 24057 +==25167== +==25167== +==25167== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25167== Open file descriptor 12: +==25167== at 0x84EF07D: pipe (pipe.c:29) +==25167== by 0x104DE07D: ??? +==25167== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25167== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25167== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25167== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25167== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25167== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25167== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25167== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25167== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25167== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25167== +==25167== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25167== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25167== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25167== by 0x7D49822: ??? +==25167== by 0x7D4996F: ??? +==25167== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25167== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25167== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25167== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25167== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25167== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25167== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25167== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25167== by 0x14D424: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25167== by 0x14766F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25167== by 0x14A908: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25167== by 0x14A7A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25167== by 0x14AE3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25167== by 0x1458D5: main (TestSimpleNonlinearEllipticSolver.cpp:19) +==25167== +==25167== Open file descriptor 158: +==25167== +==25167== +==25167== Open file descriptor 155: +==25167== +==25167== +==25167== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleNonlinearEllipticSolver_valgrind.txt +==25167== +==25167== +==25167== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25167== +==25167== +==25167== +==25167== HEAP SUMMARY: +==25167== in use at exit: 618,201 bytes in 8,234 blocks +==25167== total heap usage: 390,359 allocs, 382,125 frees, 1,347,161,979 bytes allocated +==25167== +==25167== LEAK SUMMARY: +==25167== definitely lost: 0 bytes in 0 blocks +==25167== indirectly lost: 0 bytes in 0 blocks +==25167== possibly lost: 0 bytes in 0 blocks +==25167== still reachable: 24 bytes in 2 blocks +==25167== suppressed: 618,177 bytes in 8,232 blocks +==25167== Reachable blocks (those to which a pointer was found) are not shown. +==25167== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25167== +==25167== For lists of detected and suppressed errors, rerun with: -s +==25167== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestSimpleTargetAreaModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimpleTargetAreaModifier_valgrind.txt new file mode 100644 index 000000000..f92b0c9c7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimpleTargetAreaModifier_valgrind.txt @@ -0,0 +1,73 @@ +==37216== Memcheck, a memory error detector +==37216== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==37216== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==37216== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info +==37216== Parent PID: 24057 +==37216== +==37216== +==37216== FILE DESCRIPTORS: 9 open (3 std) at exit. +==37216== Open file descriptor 12: +==37216== at 0x10CFA07D: pipe (pipe.c:29) +==37216== by 0x196B407D: ??? +==37216== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37216== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37216== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37216== by 0xF292D38: PetscInitialize (pinit.c:924) +==37216== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37216== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37216== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==37216== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37216== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37216== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37216== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37216== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==37216== +==37216== Open file descriptor 8: /dev/shm/open_mpi.0000 +==37216== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==37216== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==37216== by 0xF144822: ??? +==37216== by 0xF14496F: ??? +==37216== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37216== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37216== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==37216== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==37216== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37216== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==37216== by 0xF292D38: PetscInitialize (pinit.c:924) +==37216== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==37216== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==37216== by 0x139D63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==37216== by 0x1324DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==37216== by 0x1357DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==37216== by 0x13567C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==37216== by 0x135D13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==37216== by 0x130905: main (TestSimpleTargetAreaModifier.cpp:19) +==37216== +==37216== Open file descriptor 158: +==37216== +==37216== +==37216== Open file descriptor 155: +==37216== +==37216== +==37216== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleTargetAreaModifier_valgrind.txt +==37216== +==37216== +==37216== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==37216== +==37216== +==37216== +==37216== HEAP SUMMARY: +==37216== in use at exit: 618,370 bytes in 8,239 blocks +==37216== total heap usage: 588,725 allocs, 580,486 frees, 1,437,137,433 bytes allocated +==37216== +==37216== LEAK SUMMARY: +==37216== definitely lost: 0 bytes in 0 blocks +==37216== indirectly lost: 0 bytes in 0 blocks +==37216== possibly lost: 0 bytes in 0 blocks +==37216== still reachable: 56 bytes in 3 blocks +==37216== suppressed: 618,314 bytes in 8,236 blocks +==37216== Reachable blocks (those to which a pointer was found) are not shown. +==37216== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==37216== +==37216== For lists of detected and suppressed errors, rerun with: -s +==37216== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSimulationTime_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimulationTime_valgrind.txt new file mode 100644 index 000000000..9d91cca75 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimulationTime_valgrind.txt @@ -0,0 +1,73 @@ +==25803== Memcheck, a memory error detector +==25803== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25803== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25803== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationTime -malloc_debug -malloc_dump -memory_info +==25803== Parent PID: 24057 +==25803== +==25803== +==25803== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25803== Open file descriptor 12: +==25803== at 0xD89B07D: pipe (pipe.c:29) +==25803== by 0x196B507D: ??? +==25803== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25803== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25803== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25803== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25803== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25803== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25803== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25803== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25803== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25803== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25803== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25803== by 0x154225: main (TestSimulationTime.cpp:19) +==25803== +==25803== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25803== at 0xD89FA1C: __open_nocancel (open64_nocancel.c:39) +==25803== by 0xD823BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25803== by 0xD4DF822: ??? +==25803== by 0xD4DF96F: ??? +==25803== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25803== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25803== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25803== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25803== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25803== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25803== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==25803== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25803== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25803== by 0x15B7E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25803== by 0x155E09: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25803== by 0x158E6E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25803== by 0x158D0E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25803== by 0x1593A5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25803== by 0x154225: main (TestSimulationTime.cpp:19) +==25803== +==25803== Open file descriptor 158: +==25803== +==25803== +==25803== Open file descriptor 155: +==25803== +==25803== +==25803== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationTime_valgrind.txt +==25803== +==25803== +==25803== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25803== +==25803== +==25803== +==25803== HEAP SUMMARY: +==25803== in use at exit: 618,338 bytes in 8,238 blocks +==25803== total heap usage: 53,204 allocs, 44,966 frees, 1,338,921,940 bytes allocated +==25803== +==25803== LEAK SUMMARY: +==25803== definitely lost: 0 bytes in 0 blocks +==25803== indirectly lost: 0 bytes in 0 blocks +==25803== possibly lost: 0 bytes in 0 blocks +==25803== still reachable: 24 bytes in 2 blocks +==25803== suppressed: 618,314 bytes in 8,236 blocks +==25803== Reachable blocks (those to which a pointer was found) are not shown. +==25803== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25803== +==25803== For lists of detected and suppressed errors, rerun with: -s +==25803== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..219f7ee2a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25650== Memcheck, a memory error detector +==25650== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25650== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25650== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25650== Parent PID: 24057 +==25650== +==25650== +==25650== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25650== Open file descriptor 12: +==25650== at 0x1105507D: pipe (pipe.c:29) +==25650== by 0x196B407D: ??? +==25650== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25650== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25650== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25650== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25650== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25650== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25650== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25650== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25650== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25650== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25650== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25650== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25650== +==25650== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25650== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25650== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25650== by 0x1085F822: ??? +==25650== by 0x1085F96F: ??? +==25650== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25650== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25650== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25650== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25650== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25650== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25650== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25650== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25650== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25650== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25650== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25650== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25650== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25650== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25650== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) +==25650== +==25650== Open file descriptor 158: +==25650== +==25650== +==25650== Open file descriptor 155: +==25650== +==25650== +==25650== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt +==25650== +==25650== +==25650== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25650== +==25650== +==25650== +==25650== HEAP SUMMARY: +==25650== in use at exit: 618,297 bytes in 8,235 blocks +==25650== total heap usage: 7,860,251 allocs, 7,852,016 frees, 2,184,346,212 bytes allocated +==25650== +==25650== LEAK SUMMARY: +==25650== definitely lost: 0 bytes in 0 blocks +==25650== indirectly lost: 0 bytes in 0 blocks +==25650== possibly lost: 0 bytes in 0 blocks +==25650== still reachable: 56 bytes in 3 blocks +==25650== suppressed: 618,241 bytes in 8,232 blocks +==25650== Reachable blocks (those to which a pointer was found) are not shown. +==25650== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25650== +==25650== For lists of detected and suppressed errors, rerun with: -s +==25650== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..b0fe2133b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25675== Memcheck, a memory error detector +==25675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25675== Parent PID: 24057 +==25675== +==25675== +==25675== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25675== Open file descriptor 12: +==25675== at 0x1105507D: pipe (pipe.c:29) +==25675== by 0x196B407D: ??? +==25675== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25675== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25675== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25675== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25675== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25675== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25675== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25675== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25675== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25675== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25675== +==25675== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25675== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25675== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25675== by 0x1085F822: ??? +==25675== by 0x1085F96F: ??? +==25675== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25675== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25675== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25675== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25675== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25675== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25675== by 0x12F3BB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25675== by 0x12A2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25675== by 0x12CDFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25675== by 0x12CC9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25675== by 0x12D333: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25675== by 0x1286D5: main (TestSimulationsWithEllipticGrowingDomainPdeModifier.cpp:19) +==25675== +==25675== Open file descriptor 158: +==25675== +==25675== +==25675== Open file descriptor 155: +==25675== +==25675== +==25675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticGrowingDomainPdeModifier_valgrind.txt +==25675== +==25675== +==25675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25675== +==25675== +==25675== +==25675== HEAP SUMMARY: +==25675== in use at exit: 618,297 bytes in 8,235 blocks +==25675== total heap usage: 5,213,990 allocs, 5,205,755 frees, 2,319,889,567 bytes allocated +==25675== +==25675== LEAK SUMMARY: +==25675== definitely lost: 0 bytes in 0 blocks +==25675== indirectly lost: 0 bytes in 0 blocks +==25675== possibly lost: 0 bytes in 0 blocks +==25675== still reachable: 56 bytes in 3 blocks +==25675== suppressed: 618,241 bytes in 8,232 blocks +==25675== Reachable blocks (those to which a pointer was found) are not shown. +==25675== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25675== +==25675== For lists of detected and suppressed errors, rerun with: -s +==25675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..428c84dd4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25751== Memcheck, a memory error detector +==25751== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25751== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25751== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25751== Parent PID: 24057 +==25751== +==25751== +==25751== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25751== Open file descriptor 12: +==25751== at 0x1105507D: pipe (pipe.c:29) +==25751== by 0x196B407D: ??? +==25751== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25751== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25751== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25751== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25751== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25751== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25751== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25751== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25751== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25751== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25751== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25751== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25751== +==25751== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25751== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25751== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25751== by 0x1085F822: ??? +==25751== by 0x1085F96F: ??? +==25751== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25751== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25751== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25751== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25751== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25751== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25751== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25751== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25751== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25751== by 0x129501: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25751== by 0x1249F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25751== by 0x126F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25751== by 0x126E65: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25751== by 0x127479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25751== by 0x1231F5: main (TestSimulationsWithParabolicBoxDomainPdeModifier.cpp:18) +==25751== +==25751== Open file descriptor 158: +==25751== +==25751== +==25751== Open file descriptor 155: +==25751== +==25751== +==25751== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicBoxDomainPdeModifier_valgrind.txt +==25751== +==25751== +==25751== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25751== +==25751== +==25751== +==25751== HEAP SUMMARY: +==25751== in use at exit: 618,297 bytes in 8,235 blocks +==25751== total heap usage: 4,545,501 allocs, 4,537,266 frees, 1,827,474,962 bytes allocated +==25751== +==25751== LEAK SUMMARY: +==25751== definitely lost: 0 bytes in 0 blocks +==25751== indirectly lost: 0 bytes in 0 blocks +==25751== possibly lost: 0 bytes in 0 blocks +==25751== still reachable: 56 bytes in 3 blocks +==25751== suppressed: 618,241 bytes in 8,232 blocks +==25751== Reachable blocks (those to which a pointer was found) are not shown. +==25751== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25751== +==25751== For lists of detected and suppressed errors, rerun with: -s +==25751== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt new file mode 100644 index 000000000..59ad2b3ba --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt @@ -0,0 +1,73 @@ +==25752== Memcheck, a memory error detector +==25752== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25752== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25752== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info +==25752== Parent PID: 24057 +==25752== +==25752== +==25752== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25752== Open file descriptor 12: +==25752== at 0x1105507D: pipe (pipe.c:29) +==25752== by 0x196B407D: ??? +==25752== by 0x14C1A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25752== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25752== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25752== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25752== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25752== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25752== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25752== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25752== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25752== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25752== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25752== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25752== +==25752== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25752== at 0x11059A1C: __open_nocancel (open64_nocancel.c:39) +==25752== by 0x10FDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25752== by 0x1085F822: ??? +==25752== by 0x1085F96F: ??? +==25752== by 0x14CBF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25752== by 0x14CBF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25752== by 0x14C75922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25752== by 0x14C1A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25752== by 0x1095D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25752== by 0x108F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25752== by 0xF5CAD38: PetscInitialize (pinit.c:924) +==25752== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25752== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25752== by 0x128F89: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25752== by 0x123EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25752== by 0x1269CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25752== by 0x12686A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25752== by 0x126F01: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25752== by 0x1222D5: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19) +==25752== +==25752== Open file descriptor 158: +==25752== +==25752== +==25752== Open file descriptor 155: +==25752== +==25752== +==25752== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithParabolicGrowingDomainPdeModifier_valgrind.txt +==25752== +==25752== +==25752== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25752== +==25752== +==25752== +==25752== HEAP SUMMARY: +==25752== in use at exit: 618,297 bytes in 8,235 blocks +==25752== total heap usage: 5,584,987 allocs, 5,576,752 frees, 1,885,959,823 bytes allocated +==25752== +==25752== LEAK SUMMARY: +==25752== definitely lost: 0 bytes in 0 blocks +==25752== indirectly lost: 0 bytes in 0 blocks +==25752== possibly lost: 0 bytes in 0 blocks +==25752== still reachable: 56 bytes in 3 blocks +==25752== suppressed: 618,241 bytes in 8,232 blocks +==25752== Reachable blocks (those to which a pointer was found) are not shown. +==25752== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25752== +==25752== For lists of detected and suppressed errors, rerun with: -s +==25752== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestSingleOdeWntCellCycleModel_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSingleOdeWntCellCycleModel_valgrind.txt new file mode 100644 index 000000000..abfe0c132 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSingleOdeWntCellCycleModel_valgrind.txt @@ -0,0 +1,73 @@ +==40516== Memcheck, a memory error detector +==40516== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40516== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40516== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info +==40516== Parent PID: 24057 +==40516== +==40516== +==40516== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40516== Open file descriptor 12: +==40516== at 0x1095707D: pipe (pipe.c:29) +==40516== by 0x1B37607D: ??? +==40516== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40516== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40516== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40516== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40516== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40516== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40516== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40516== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40516== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40516== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40516== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40516== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40516== +==40516== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40516== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) +==40516== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40516== by 0xEDA1822: ??? +==40516== by 0xEDA196F: ??? +==40516== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40516== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40516== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40516== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40516== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40516== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40516== by 0xEEEFD38: PetscInitialize (pinit.c:924) +==40516== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40516== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40516== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40516== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40516== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40516== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40516== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40516== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) +==40516== +==40516== Open file descriptor 158: +==40516== +==40516== +==40516== Open file descriptor 155: +==40516== +==40516== +==40516== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt +==40516== +==40516== +==40516== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40516== +==40516== +==40516== +==40516== HEAP SUMMARY: +==40516== in use at exit: 618,530 bytes in 8,241 blocks +==40516== total heap usage: 263,090 allocs, 254,849 frees, 1,357,295,298 bytes allocated +==40516== +==40516== LEAK SUMMARY: +==40516== definitely lost: 0 bytes in 0 blocks +==40516== indirectly lost: 0 bytes in 0 blocks +==40516== possibly lost: 0 bytes in 0 blocks +==40516== still reachable: 200 bytes in 5 blocks +==40516== suppressed: 618,330 bytes in 8,236 blocks +==40516== Reachable blocks (those to which a pointer was found) are not shown. +==40516== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40516== +==40516== For lists of detected and suppressed errors, rerun with: -s +==40516== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSloughingCellKillers_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSloughingCellKillers_valgrind.txt new file mode 100644 index 000000000..124585a84 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSloughingCellKillers_valgrind.txt @@ -0,0 +1,73 @@ +==40654== Memcheck, a memory error detector +==40654== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40654== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40654== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info +==40654== Parent PID: 24057 +==40654== +==40654== +==40654== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40654== Open file descriptor 12: +==40654== at 0x126A107D: pipe (pipe.c:29) +==40654== by 0x1B37607D: ??? +==40654== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40654== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40654== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40654== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40654== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40654== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40654== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40654== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40654== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40654== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40654== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40654== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40654== +==40654== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40654== at 0x126A5A1C: __open_nocancel (open64_nocancel.c:39) +==40654== by 0x12629BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40654== by 0x10A04822: ??? +==40654== by 0x10A0496F: ??? +==40654== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40654== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40654== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40654== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40654== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40654== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40654== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40654== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40654== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40654== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40654== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40654== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40654== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40654== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40654== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) +==40654== +==40654== Open file descriptor 158: +==40654== +==40654== +==40654== Open file descriptor 155: +==40654== +==40654== +==40654== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt +==40654== +==40654== +==40654== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40654== +==40654== +==40654== +==40654== HEAP SUMMARY: +==40654== in use at exit: 618,386 bytes in 8,239 blocks +==40654== total heap usage: 100,670 allocs, 92,431 frees, 1,342,470,293 bytes allocated +==40654== +==40654== LEAK SUMMARY: +==40654== definitely lost: 0 bytes in 0 blocks +==40654== indirectly lost: 0 bytes in 0 blocks +==40654== possibly lost: 0 bytes in 0 blocks +==40654== still reachable: 56 bytes in 3 blocks +==40654== suppressed: 618,330 bytes in 8,236 blocks +==40654== Reachable blocks (those to which a pointer was found) are not shown. +==40654== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40654== +==40654== For lists of detected and suppressed errors, rerun with: -s +==40654== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestSolveLaplacianWithQuadratics_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSolveLaplacianWithQuadratics_valgrind.txt new file mode 100644 index 000000000..30793965b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSolveLaplacianWithQuadratics_valgrind.txt @@ -0,0 +1,73 @@ +==25183== Memcheck, a memory error detector +==25183== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25183== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25183== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolveLaplacianWithQuadratics -malloc_debug -malloc_dump -memory_info +==25183== Parent PID: 24057 +==25183== +==25183== +==25183== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25183== Open file descriptor 12: +==25183== at 0x84EF07D: pipe (pipe.c:29) +==25183== by 0x104DE07D: ??? +==25183== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25183== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25183== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25183== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25183== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25183== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25183== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25183== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25183== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25183== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25183== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25183== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25183== +==25183== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25183== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25183== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25183== by 0x7D49822: ??? +==25183== by 0x7D4996F: ??? +==25183== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25183== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25183== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25183== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25183== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25183== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25183== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25183== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25183== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25183== by 0x15D32E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25183== by 0x1582D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25183== by 0x15AFE6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25183== by 0x15AEE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25183== by 0x15B4F5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25183== by 0x156AD5: main (TestSolveLaplacianWithQuadratics.cpp:18) +==25183== +==25183== Open file descriptor 158: +==25183== +==25183== +==25183== Open file descriptor 155: +==25183== +==25183== +==25183== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolveLaplacianWithQuadratics_valgrind.txt +==25183== +==25183== +==25183== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25183== +==25183== +==25183== +==25183== HEAP SUMMARY: +==25183== in use at exit: 618,274 bytes in 8,238 blocks +==25183== total heap usage: 317,735 allocs, 309,497 frees, 1,357,888,801 bytes allocated +==25183== +==25183== LEAK SUMMARY: +==25183== definitely lost: 0 bytes in 0 blocks +==25183== indirectly lost: 0 bytes in 0 blocks +==25183== possibly lost: 0 bytes in 0 blocks +==25183== still reachable: 24 bytes in 2 blocks +==25183== suppressed: 618,250 bytes in 8,236 blocks +==25183== Reachable blocks (those to which a pointer was found) are not shown. +==25183== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25183== +==25183== For lists of detected and suppressed errors, rerun with: -s +==25183== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSolvingCoupledPdes_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSolvingCoupledPdes_valgrind.txt new file mode 100644 index 000000000..ec9b30185 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSolvingCoupledPdes_valgrind.txt @@ -0,0 +1,73 @@ +==25168== Memcheck, a memory error detector +==25168== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25168== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25168== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingCoupledPdes -malloc_debug -malloc_dump -memory_info +==25168== Parent PID: 24057 +==25168== +==25168== +==25168== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25168== Open file descriptor 12: +==25168== at 0x84EF07D: pipe (pipe.c:29) +==25168== by 0x104DE07D: ??? +==25168== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25168== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25168== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25168== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25168== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25168== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25168== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25168== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25168== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25168== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25168== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25168== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25168== +==25168== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25168== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25168== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25168== by 0x7D49822: ??? +==25168== by 0x7D4996F: ??? +==25168== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25168== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25168== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25168== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25168== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25168== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25168== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25168== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25168== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25168== by 0x143C06: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25168== by 0x13ECB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25168== by 0x1418BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25168== by 0x1417B9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25168== by 0x141DCD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25168== by 0x13D4B5: main (TestSolvingCoupledPdes.cpp:18) +==25168== +==25168== Open file descriptor 158: +==25168== +==25168== +==25168== Open file descriptor 155: +==25168== +==25168== +==25168== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingCoupledPdes_valgrind.txt +==25168== +==25168== +==25168== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25168== +==25168== +==25168== +==25168== HEAP SUMMARY: +==25168== in use at exit: 618,274 bytes in 8,238 blocks +==25168== total heap usage: 362,664 allocs, 354,426 frees, 1,353,740,048 bytes allocated +==25168== +==25168== LEAK SUMMARY: +==25168== definitely lost: 0 bytes in 0 blocks +==25168== indirectly lost: 0 bytes in 0 blocks +==25168== possibly lost: 0 bytes in 0 blocks +==25168== still reachable: 24 bytes in 2 blocks +==25168== suppressed: 618,250 bytes in 8,236 blocks +==25168== Reachable blocks (those to which a pointer was found) are not shown. +==25168== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25168== +==25168== For lists of detected and suppressed errors, rerun with: -s +==25168== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSolvingNonlinearPdesTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSolvingNonlinearPdesTutorial_valgrind.txt new file mode 100644 index 000000000..504838f7d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSolvingNonlinearPdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25185== Memcheck, a memory error detector +==25185== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25185== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25185== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestSolvingNonlinearPdesTutorial -malloc_debug -malloc_dump -memory_info +==25185== Parent PID: 24057 +==25185== +==25185== +==25185== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25185== Open file descriptor 12: +==25185== at 0x84EF07D: pipe (pipe.c:29) +==25185== by 0x104DE07D: ??? +==25185== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25185== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25185== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25185== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25185== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25185== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25185== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25185== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25185== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25185== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25185== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25185== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25185== +==25185== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25185== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39) +==25185== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25185== by 0x7D49822: ??? +==25185== by 0x7D4996F: ??? +==25185== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25185== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25185== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25185== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25185== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25185== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25185== by 0x6AB4D38: PetscInitialize (pinit.c:924) +==25185== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25185== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25185== by 0x1389EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25185== by 0x133AFF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25185== by 0x1366A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25185== by 0x1365A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25185== by 0x136BB5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25185== by 0x1322D5: main (TestSolvingNonlinearPdesTutorial.cpp:18) +==25185== +==25185== Open file descriptor 158: +==25185== +==25185== +==25185== Open file descriptor 155: +==25185== +==25185== +==25185== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingNonlinearPdesTutorial_valgrind.txt +==25185== +==25185== +==25185== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25185== +==25185== +==25185== +==25185== HEAP SUMMARY: +==25185== in use at exit: 618,274 bytes in 8,238 blocks +==25185== total heap usage: 243,597 allocs, 235,359 frees, 1,341,285,060 bytes allocated +==25185== +==25185== LEAK SUMMARY: +==25185== definitely lost: 0 bytes in 0 blocks +==25185== indirectly lost: 0 bytes in 0 blocks +==25185== possibly lost: 0 bytes in 0 blocks +==25185== still reachable: 24 bytes in 2 blocks +==25185== suppressed: 618,250 bytes in 8,236 blocks +==25185== Reachable blocks (those to which a pointer was found) are not shown. +==25185== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25185== +==25185== For lists of detected and suppressed errors, rerun with: -s +==25185== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSolvingOdesTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSolvingOdesTutorial_valgrind.txt new file mode 100644 index 000000000..82301eabc --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSolvingOdesTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25080== Memcheck, a memory error detector +==25080== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25080== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25080== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingOdesTutorial -malloc_debug -malloc_dump -memory_info +==25080== Parent PID: 24057 +==25080== +==25080== +==25080== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25080== Open file descriptor 12: +==25080== at 0x63C507D: pipe (pipe.c:29) +==25080== by 0xB1E407D: ??? +==25080== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25080== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x4C65D38: PetscInitialize (pinit.c:924) +==25080== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25080== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25080== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25080== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25080== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25080== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25080== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25080== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==25080== +==25080== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25080== at 0x63C9A1C: __open_nocancel (open64_nocancel.c:39) +==25080== by 0x634DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25080== by 0x5EFA822: ??? +==25080== by 0x5EFA96F: ??? +==25080== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25080== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25080== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25080== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25080== by 0x5FFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x5F93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25080== by 0x4C65D38: PetscInitialize (pinit.c:924) +==25080== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25080== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25080== by 0x118D39: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==25080== by 0x114693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25080== by 0x1169AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25080== by 0x1168A8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25080== by 0x116EBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25080== by 0x1128D5: main (TestSolvingOdesTutorial.cpp:18) +==25080== +==25080== Open file descriptor 158: +==25080== +==25080== +==25080== Open file descriptor 155: +==25080== +==25080== +==25080== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingOdesTutorial_valgrind.txt +==25080== +==25080== +==25080== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25080== +==25080== +==25080== +==25080== HEAP SUMMARY: +==25080== in use at exit: 617,938 bytes in 8,238 blocks +==25080== total heap usage: 45,184 allocs, 36,946 frees, 1,338,244,682 bytes allocated +==25080== +==25080== LEAK SUMMARY: +==25080== definitely lost: 0 bytes in 0 blocks +==25080== indirectly lost: 0 bytes in 0 blocks +==25080== possibly lost: 0 bytes in 0 blocks +==25080== still reachable: 24 bytes in 2 blocks +==25080== suppressed: 617,914 bytes in 8,236 blocks +==25080== Reachable blocks (those to which a pointer was found) are not shown. +==25080== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25080== +==25080== For lists of detected and suppressed errors, rerun with: -s +==25080== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSolvingStiffOdeSystems_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSolvingStiffOdeSystems_valgrind.txt new file mode 100644 index 000000000..2f6440460 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSolvingStiffOdeSystems_valgrind.txt @@ -0,0 +1,73 @@ +==25067== Memcheck, a memory error detector +==25067== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25067== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25067== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestSolvingStiffOdeSystems -malloc_debug -malloc_dump -memory_info +==25067== Parent PID: 24057 +==25067== +==25067== +==25067== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25067== Open file descriptor 12: +==25067== at 0x4F1007D: pipe (pipe.c:29) +==25067== by 0xB1E607D: ??? +==25067== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25067== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25067== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25067== by 0x5308D38: PetscInitialize (pinit.c:924) +==25067== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25067== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25067== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25067== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25067== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25067== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25067== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25067== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==25067== +==25067== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25067== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39) +==25067== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25067== by 0x4B7C822: ??? +==25067== by 0x4B7C96F: ??? +==25067== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25067== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25067== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25067== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25067== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25067== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25067== by 0x5308D38: PetscInitialize (pinit.c:924) +==25067== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25067== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25067== by 0x118D00: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25067== by 0x114431: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25067== by 0x1167AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25067== by 0x1166A9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25067== by 0x116CBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25067== by 0x112835: main (TestSolvingStiffOdeSystems.cpp:18) +==25067== +==25067== Open file descriptor 158: +==25067== +==25067== +==25067== Open file descriptor 155: +==25067== +==25067== +==25067== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSolvingStiffOdeSystems_valgrind.txt +==25067== +==25067== +==25067== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25067== +==25067== +==25067== +==25067== HEAP SUMMARY: +==25067== in use at exit: 617,938 bytes in 8,238 blocks +==25067== total heap usage: 47,082 allocs, 38,844 frees, 1,338,228,319 bytes allocated +==25067== +==25067== LEAK SUMMARY: +==25067== definitely lost: 0 bytes in 0 blocks +==25067== indirectly lost: 0 bytes in 0 blocks +==25067== possibly lost: 0 bytes in 0 blocks +==25067== still reachable: 24 bytes in 2 blocks +==25067== suppressed: 617,914 bytes in 8,236 blocks +==25067== Reachable blocks (those to which a pointer was found) are not shown. +==25067== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25067== +==25067== For lists of detected and suppressed errors, rerun with: -s +==25067== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSpiralWaveAndPhase_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSpiralWaveAndPhase_valgrind.txt new file mode 100644 index 000000000..e383dc514 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSpiralWaveAndPhase_valgrind.txt @@ -0,0 +1,73 @@ +==43947== Memcheck, a memory error detector +==43947== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43947== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43947== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSpiralWaveAndPhase -malloc_debug -malloc_dump -memory_info +==43947== Parent PID: 24057 +==43947== +==43947== +==43947== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43947== Open file descriptor 12: +==43947== at 0x84D307D: pipe (pipe.c:29) +==43947== by 0x104DE07D: ??? +==43947== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43947== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43947== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43947== by 0x6A98D38: PetscInitialize (pinit.c:924) +==43947== by 0x696F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43947== by 0x696F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43947== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43947== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43947== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43947== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43947== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43947== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43947== +==43947== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43947== at 0x84D7A1C: __open_nocancel (open64_nocancel.c:39) +==43947== by 0x845BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43947== by 0x7D2D822: ??? +==43947== by 0x7D2D96F: ??? +==43947== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43947== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43947== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43947== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43947== by 0x8B56418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43947== by 0x8AEFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43947== by 0x6A98D38: PetscInitialize (pinit.c:924) +==43947== by 0x696F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43947== by 0x696F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43947== by 0x119000: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43947== by 0x1147B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43947== by 0x116FAC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43947== by 0x116EA7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43947== by 0x1174BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43947== by 0x112FB5: main (TestSpiralWaveAndPhase.cpp:18) +==43947== +==43947== Open file descriptor 158: +==43947== +==43947== +==43947== Open file descriptor 155: +==43947== +==43947== +==43947== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSpiralWaveAndPhase_valgrind.txt +==43947== +==43947== +==43947== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43947== +==43947== +==43947== +==43947== HEAP SUMMARY: +==43947== in use at exit: 618,681 bytes in 8,244 blocks +==43947== total heap usage: 4,351,541 allocs, 4,343,297 frees, 1,902,290,704 bytes allocated +==43947== +==43947== LEAK SUMMARY: +==43947== definitely lost: 0 bytes in 0 blocks +==43947== indirectly lost: 0 bytes in 0 blocks +==43947== possibly lost: 0 bytes in 0 blocks +==43947== still reachable: 24 bytes in 2 blocks +==43947== suppressed: 618,657 bytes in 8,242 blocks +==43947== Reachable blocks (those to which a pointer was found) are not shown. +==43947== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43947== +==43947== For lists of detected and suppressed errors, rerun with: -s +==43947== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestSteadyStateRunner_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSteadyStateRunner_valgrind.txt new file mode 100644 index 000000000..72c6c7768 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSteadyStateRunner_valgrind.txt @@ -0,0 +1,73 @@ +==43084== Memcheck, a memory error detector +==43084== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43084== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43084== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestSteadyStateRunner -malloc_debug -malloc_dump -memory_info +==43084== Parent PID: 24057 +==43084== +==43084== +==43084== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43084== Open file descriptor 12: +==43084== at 0x9C6807D: pipe (pipe.c:29) +==43084== by 0x1432F07D: ??? +==43084== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43084== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43084== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43084== by 0x8508D38: PetscInitialize (pinit.c:924) +==43084== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43084== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43084== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43084== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43084== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43084== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43084== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43084== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==43084== +==43084== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43084== at 0x9C6CA1C: __open_nocancel (open64_nocancel.c:39) +==43084== by 0x9BF0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43084== by 0x979D822: ??? +==43084== by 0x979D96F: ??? +==43084== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43084== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43084== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43084== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43084== by 0x989B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43084== by 0x9834D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43084== by 0x8508D38: PetscInitialize (pinit.c:924) +==43084== by 0x83DF1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43084== by 0x83DF227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43084== by 0x115FF5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43084== by 0x1114AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43084== by 0x113CD0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43084== by 0x113B70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43084== by 0x114207: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43084== by 0x10F8D5: main (TestSteadyStateRunner.cpp:19) +==43084== +==43084== Open file descriptor 158: +==43084== +==43084== +==43084== Open file descriptor 155: +==43084== +==43084== +==43084== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSteadyStateRunner_valgrind.txt +==43084== +==43084== +==43084== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43084== +==43084== +==43084== +==43084== HEAP SUMMARY: +==43084== in use at exit: 618,281 bytes in 8,234 blocks +==43084== total heap usage: 50,555 allocs, 42,321 frees, 1,338,885,412 bytes allocated +==43084== +==43084== LEAK SUMMARY: +==43084== definitely lost: 0 bytes in 0 blocks +==43084== indirectly lost: 0 bytes in 0 blocks +==43084== possibly lost: 0 bytes in 0 blocks +==43084== still reachable: 24 bytes in 2 blocks +==43084== suppressed: 618,257 bytes in 8,232 blocks +==43084== Reachable blocks (those to which a pointer was found) are not shown. +==43084== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43084== +==43084== For lists of detected and suppressed errors, rerun with: -s +==43084== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestStepSizeException_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStepSizeException_valgrind.txt new file mode 100644 index 000000000..03389adef --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStepSizeException_valgrind.txt @@ -0,0 +1,73 @@ +==39675== Memcheck, a memory error detector +==39675== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39675== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info +==39675== Parent PID: 24057 +==39675== +==39675== +==39675== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39675== Open file descriptor 12: +==39675== at 0x4CB407D: pipe (pipe.c:29) +==39675== by 0xAEA507D: ??? +==39675== by 0x89BE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39675== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39675== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39675== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39675== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39675== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39675== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39675== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39675== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39675== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39675== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39675== by 0x10D735: main (TestStepSizeException.cpp:19) +==39675== +==39675== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39675== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==39675== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39675== by 0x493A822: ??? +==39675== by 0x493A96F: ??? +==39675== by 0x8A636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39675== by 0x8A63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39675== by 0x8A19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39675== by 0x89BE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39675== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39675== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39675== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==39675== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39675== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39675== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39675== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39675== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39675== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39675== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39675== by 0x10D735: main (TestStepSizeException.cpp:19) +==39675== +==39675== Open file descriptor 158: +==39675== +==39675== +==39675== Open file descriptor 155: +==39675== +==39675== +==39675== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt +==39675== +==39675== +==39675== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39675== +==39675== +==39675== +==39675== HEAP SUMMARY: +==39675== in use at exit: 617,874 bytes in 8,238 blocks +==39675== total heap usage: 44,916 allocs, 36,678 frees, 1,338,160,580 bytes allocated +==39675== +==39675== LEAK SUMMARY: +==39675== definitely lost: 0 bytes in 0 blocks +==39675== indirectly lost: 0 bytes in 0 blocks +==39675== possibly lost: 0 bytes in 0 blocks +==39675== still reachable: 24 bytes in 2 blocks +==39675== suppressed: 617,850 bytes in 8,236 blocks +==39675== Reachable blocks (those to which a pointer was found) are not shown. +==39675== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39675== +==39675== For lists of detected and suppressed errors, rerun with: -s +==39675== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestStimulusBoundaryCondition_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStimulusBoundaryCondition_valgrind.txt new file mode 100644 index 000000000..e803bb659 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStimulusBoundaryCondition_valgrind.txt @@ -0,0 +1,73 @@ +==43997== Memcheck, a memory error detector +==43997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43997== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info +==43997== Parent PID: 24057 +==43997== +==43997== +==43997== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43997== Open file descriptor 12: +==43997== at 0xA56F07D: pipe (pipe.c:29) +==43997== by 0x1432F07D: ??? +==43997== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43997== by 0xBC6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43997== by 0xBC03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43997== by 0xA8FAD38: PetscInitialize (pinit.c:924) +==43997== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43997== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43997== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43997== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43997== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43997== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43997== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43997== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43997== +==43997== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43997== at 0xA573A1C: __open_nocancel (open64_nocancel.c:39) +==43997== by 0xA4F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43997== by 0xA1DD822: ??? +==43997== by 0xA1DD96F: ??? +==43997== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43997== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43997== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43997== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43997== by 0xBC6A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43997== by 0xBC03D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43997== by 0xA8FAD38: PetscInitialize (pinit.c:924) +==43997== by 0xA19D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43997== by 0xA19D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43997== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43997== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43997== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43997== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43997== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43997== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) +==43997== +==43997== Open file descriptor 158: +==43997== +==43997== +==43997== Open file descriptor 155: +==43997== +==43997== +==43997== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt +==43997== +==43997== +==43997== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43997== +==43997== +==43997== +==43997== HEAP SUMMARY: +==43997== in use at exit: 618,354 bytes in 8,238 blocks +==43997== total heap usage: 48,818 allocs, 40,580 frees, 1,338,523,601 bytes allocated +==43997== +==43997== LEAK SUMMARY: +==43997== definitely lost: 0 bytes in 0 blocks +==43997== indirectly lost: 0 bytes in 0 blocks +==43997== possibly lost: 0 bytes in 0 blocks +==43997== still reachable: 24 bytes in 2 blocks +==43997== suppressed: 618,330 bytes in 8,236 blocks +==43997== Reachable blocks (those to which a pointer was found) are not shown. +==43997== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43997== +==43997== For lists of detected and suppressed errors, rerun with: -s +==43997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestStimulusFactory_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStimulusFactory_valgrind.txt new file mode 100644 index 000000000..f3b54c567 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStimulusFactory_valgrind.txt @@ -0,0 +1,73 @@ +==41622== Memcheck, a memory error detector +==41622== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41622== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41622== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusFactory -malloc_debug -malloc_dump -memory_info +==41622== Parent PID: 24057 +==41622== +==41622== +==41622== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41622== Open file descriptor 12: +==41622== at 0xA7CE07D: pipe (pipe.c:29) +==41622== by 0x1432F07D: ??? +==41622== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41622== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41622== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41622== by 0xAB57D38: PetscInitialize (pinit.c:924) +==41622== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41622== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41622== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41622== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41622== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41622== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41622== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41622== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41622== +==41622== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41622== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39) +==41622== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41622== by 0xA0F5822: ??? +==41622== by 0xA0F596F: ??? +==41622== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41622== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41622== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41622== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41622== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41622== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41622== by 0xAB57D38: PetscInitialize (pinit.c:924) +==41622== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41622== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41622== by 0x122E20: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41622== by 0x11DDCD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41622== by 0x120996: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41622== by 0x120836: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41622== by 0x120ECD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41622== by 0x11C1F5: main (TestStimulusFactory.cpp:19) +==41622== +==41622== Open file descriptor 158: +==41622== +==41622== +==41622== Open file descriptor 155: +==41622== +==41622== +==41622== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusFactory_valgrind.txt +==41622== +==41622== +==41622== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41622== +==41622== +==41622== +==41622== HEAP SUMMARY: +==41622== in use at exit: 618,834 bytes in 8,248 blocks +==41622== total heap usage: 180,616 allocs, 172,368 frees, 1,362,117,698 bytes allocated +==41622== +==41622== LEAK SUMMARY: +==41622== definitely lost: 0 bytes in 0 blocks +==41622== indirectly lost: 0 bytes in 0 blocks +==41622== possibly lost: 0 bytes in 0 blocks +==41622== still reachable: 24 bytes in 2 blocks +==41622== suppressed: 618,810 bytes in 8,246 blocks +==41622== Reachable blocks (those to which a pointer was found) are not shown. +==41622== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41622== +==41622== For lists of detected and suppressed errors, rerun with: -s +==41622== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestStimulus_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStimulus_valgrind.txt new file mode 100644 index 000000000..c0de6ac54 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStimulus_valgrind.txt @@ -0,0 +1,73 @@ +==43984== Memcheck, a memory error detector +==43984== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43984== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43984== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulus -malloc_debug -malloc_dump -memory_info +==43984== Parent PID: 24057 +==43984== +==43984== +==43984== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43984== Open file descriptor 12: +==43984== at 0x9B4F07D: pipe (pipe.c:29) +==43984== by 0x1432F07D: ??? +==43984== by 0xEE294CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43984== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43984== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43984== by 0x832BD38: PetscInitialize (pinit.c:924) +==43984== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43984== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43984== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43984== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43984== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43984== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43984== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43984== by 0x11D025: main (TestStimulus.cpp:18) +==43984== +==43984== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43984== at 0x9B53A1C: __open_nocancel (open64_nocancel.c:39) +==43984== by 0x9AD7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43984== by 0x81DB822: ??? +==43984== by 0x81DB96F: ??? +==43984== by 0xEED06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43984== by 0xEED0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43984== by 0xEE86922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43984== by 0xEE292DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43984== by 0x969B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43984== by 0x9634D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43984== by 0x832BD38: PetscInitialize (pinit.c:924) +==43984== by 0x819B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43984== by 0x819B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43984== by 0x123427: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==43984== by 0x11E823: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43984== by 0x120E66: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43984== by 0x120D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43984== by 0x121375: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43984== by 0x11D025: main (TestStimulus.cpp:18) +==43984== +==43984== Open file descriptor 158: +==43984== +==43984== +==43984== Open file descriptor 155: +==43984== +==43984== +==43984== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulus_valgrind.txt +==43984== +==43984== +==43984== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43984== +==43984== +==43984== +==43984== HEAP SUMMARY: +==43984== in use at exit: 618,354 bytes in 8,238 blocks +==43984== total heap usage: 48,980 allocs, 40,742 frees, 1,338,552,293 bytes allocated +==43984== +==43984== LEAK SUMMARY: +==43984== definitely lost: 0 bytes in 0 blocks +==43984== indirectly lost: 0 bytes in 0 blocks +==43984== possibly lost: 0 bytes in 0 blocks +==43984== still reachable: 24 bytes in 2 blocks +==43984== suppressed: 618,330 bytes in 8,236 blocks +==43984== Reachable blocks (those to which a pointer was found) are not shown. +==43984== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43984== +==43984== For lists of detected and suppressed errors, rerun with: -s +==43984== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestStokesFlowAssembler_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStokesFlowAssembler_valgrind.txt new file mode 100644 index 000000000..f27709805 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStokesFlowAssembler_valgrind.txt @@ -0,0 +1,73 @@ +==25403== Memcheck, a memory error detector +==25403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25403== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowAssembler -malloc_debug -malloc_dump -memory_info +==25403== Parent PID: 24057 +==25403== +==25403== +==25403== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25403== Open file descriptor 12: +==25403== at 0x866F07D: pipe (pipe.c:29) +==25403== by 0x106E107D: ??? +==25403== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25403== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25403== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25403== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25403== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25403== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25403== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25403== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25403== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25403== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25403== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25403== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25403== +==25403== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25403== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25403== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25403== by 0x7EC9822: ??? +==25403== by 0x7EC996F: ??? +==25403== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25403== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25403== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25403== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25403== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25403== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25403== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25403== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25403== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25403== by 0x12CFE0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25403== by 0x128839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25403== by 0x12AC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25403== by 0x12AB53: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25403== by 0x12B167: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25403== by 0x126EB5: main (TestStokesFlowAssembler.cpp:18) +==25403== +==25403== Open file descriptor 158: +==25403== +==25403== +==25403== Open file descriptor 155: +==25403== +==25403== +==25403== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowAssembler_valgrind.txt +==25403== +==25403== +==25403== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25403== +==25403== +==25403== +==25403== HEAP SUMMARY: +==25403== in use at exit: 618,290 bytes in 8,238 blocks +==25403== total heap usage: 48,399 allocs, 40,161 frees, 1,338,713,794 bytes allocated +==25403== +==25403== LEAK SUMMARY: +==25403== definitely lost: 0 bytes in 0 blocks +==25403== indirectly lost: 0 bytes in 0 blocks +==25403== possibly lost: 0 bytes in 0 blocks +==25403== still reachable: 24 bytes in 2 blocks +==25403== suppressed: 618,266 bytes in 8,236 blocks +==25403== Reachable blocks (those to which a pointer was found) are not shown. +==25403== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25403== +==25403== For lists of detected and suppressed errors, rerun with: -s +==25403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestStokesFlowSolver_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStokesFlowSolver_valgrind.txt new file mode 100644 index 000000000..9868f6654 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStokesFlowSolver_valgrind.txt @@ -0,0 +1,73 @@ +==25411== Memcheck, a memory error detector +==25411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25411== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestStokesFlowSolver -malloc_debug -malloc_dump -memory_info +==25411== Parent PID: 24057 +==25411== +==25411== +==25411== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25411== Open file descriptor 12: +==25411== at 0x866F07D: pipe (pipe.c:29) +==25411== by 0x106E107D: ??? +==25411== by 0xC4F54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25411== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25411== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25411== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25411== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25411== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25411== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25411== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25411== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25411== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25411== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25411== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25411== +==25411== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25411== at 0x8673A1C: __open_nocancel (open64_nocancel.c:39) +==25411== by 0x85F7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25411== by 0x7EC9822: ??? +==25411== by 0x7EC996F: ??? +==25411== by 0xC59A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25411== by 0xC59A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25411== by 0xC550922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25411== by 0xC4F52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25411== by 0x8CD6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25411== by 0x8C6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25411== by 0x6C34D38: PetscInitialize (pinit.c:924) +==25411== by 0x6B0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25411== by 0x6B0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25411== by 0x158044: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25411== by 0x1529D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25411== by 0x155C4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25411== by 0x155B49: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25411== by 0x15615D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25411== by 0x1511D5: main (TestStokesFlowSolver.cpp:18) +==25411== +==25411== Open file descriptor 158: +==25411== +==25411== +==25411== Open file descriptor 155: +==25411== +==25411== +==25411== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStokesFlowSolver_valgrind.txt +==25411== +==25411== +==25411== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25411== +==25411== +==25411== +==25411== HEAP SUMMARY: +==25411== in use at exit: 618,217 bytes in 8,234 blocks +==25411== total heap usage: 557,704 allocs, 549,470 frees, 1,530,978,784 bytes allocated +==25411== +==25411== LEAK SUMMARY: +==25411== definitely lost: 0 bytes in 0 blocks +==25411== indirectly lost: 0 bytes in 0 blocks +==25411== possibly lost: 0 bytes in 0 blocks +==25411== still reachable: 24 bytes in 2 blocks +==25411== suppressed: 618,193 bytes in 8,232 blocks +==25411== Reachable blocks (those to which a pointer was found) are not shown. +==25411== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25411== +==25411== For lists of detected and suppressed errors, rerun with: -s +==25411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30) diff --git a/log-files/2025-02-12_21-17-58/TestStreeterFibreGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestStreeterFibreGenerator_valgrind.txt new file mode 100644 index 000000000..d00681543 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestStreeterFibreGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==41676== Memcheck, a memory error detector +==41676== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41676== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41676== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStreeterFibreGenerator -malloc_debug -malloc_dump -memory_info +==41676== Parent PID: 24057 +==41676== +==41676== +==41676== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41676== Open file descriptor 12: +==41676== at 0xB9CE07D: pipe (pipe.c:29) +==41676== by 0x1432F07D: ??? +==41676== by 0xFAE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41676== by 0xB2BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41676== by 0xB255D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41676== by 0x9F29D38: PetscInitialize (pinit.c:924) +==41676== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41676== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41676== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41676== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41676== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41676== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41676== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41676== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41676== +==41676== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41676== at 0xB9D2A1C: __open_nocancel (open64_nocancel.c:39) +==41676== by 0xB956BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41676== by 0xB1BE822: ??? +==41676== by 0xB1BE96F: ??? +==41676== by 0xFB8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41676== by 0xFB8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41676== by 0xFB44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41676== by 0xFAE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41676== by 0xB2BC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41676== by 0xB255D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41676== by 0x9F29D38: PetscInitialize (pinit.c:924) +==41676== by 0x9E001D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41676== by 0x9E00227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41676== by 0x11B488: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41676== by 0x11684D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41676== by 0x1192DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41676== by 0x11917C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41676== by 0x119813: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41676== by 0x114C75: main (TestStreeterFibreGenerator.cpp:19) +==41676== +==41676== Open file descriptor 158: +==41676== +==41676== +==41676== Open file descriptor 155: +==41676== +==41676== +==41676== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStreeterFibreGenerator_valgrind.txt +==41676== +==41676== +==41676== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41676== +==41676== +==41676== +==41676== HEAP SUMMARY: +==41676== in use at exit: 618,281 bytes in 8,234 blocks +==41676== total heap usage: 4,490,131 allocs, 4,481,897 frees, 1,575,791,492 bytes allocated +==41676== +==41676== LEAK SUMMARY: +==41676== definitely lost: 0 bytes in 0 blocks +==41676== indirectly lost: 0 bytes in 0 blocks +==41676== possibly lost: 0 bytes in 0 blocks +==41676== still reachable: 24 bytes in 2 blocks +==41676== suppressed: 618,257 bytes in 8,232 blocks +==41676== Reachable blocks (those to which a pointer was found) are not shown. +==41676== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41676== +==41676== For lists of detected and suppressed errors, rerun with: -s +==41676== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestSuperellipseGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestSuperellipseGenerator_valgrind.txt new file mode 100644 index 000000000..8b2eaac2d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestSuperellipseGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24974== Memcheck, a memory error detector +==24974== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24974== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24974== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestSuperellipseGenerator -malloc_debug -malloc_dump -memory_info +==24974== Parent PID: 24057 +==24974== +==24974== +==24974== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24974== Open file descriptor 12: +==24974== at 0x7EB307D: pipe (pipe.c:29) +==24974== by 0x100CC07D: ??? +==24974== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24974== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24974== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24974== by 0x6686D38: PetscInitialize (pinit.c:924) +==24974== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24974== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24974== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24974== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24974== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24974== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24974== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24974== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24974== +==24974== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24974== at 0x7EB7A1C: __open_nocancel (open64_nocancel.c:39) +==24974== by 0x7E3BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24974== by 0x791B822: ??? +==24974== by 0x791B96F: ??? +==24974== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24974== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24974== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24974== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24974== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24974== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24974== by 0x6686D38: PetscInitialize (pinit.c:924) +==24974== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24974== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24974== by 0x1163ED: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24974== by 0x111E13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24974== by 0x114280: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24974== by 0x11417B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24974== by 0x11478F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24974== by 0x110615: main (TestSuperellipseGenerator.cpp:18) +==24974== +==24974== Open file descriptor 158: +==24974== +==24974== +==24974== Open file descriptor 155: +==24974== +==24974== +==24974== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSuperellipseGenerator_valgrind.txt +==24974== +==24974== +==24974== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24974== +==24974== +==24974== +==24974== HEAP SUMMARY: +==24974== in use at exit: 618,242 bytes in 8,238 blocks +==24974== total heap usage: 47,338 allocs, 39,100 frees, 1,362,406,844 bytes allocated +==24974== +==24974== LEAK SUMMARY: +==24974== definitely lost: 0 bytes in 0 blocks +==24974== indirectly lost: 0 bytes in 0 blocks +==24974== possibly lost: 0 bytes in 0 blocks +==24974== still reachable: 24 bytes in 2 blocks +==24974== suppressed: 618,218 bytes in 8,236 blocks +==24974== Reachable blocks (those to which a pointer was found) are not shown. +==24974== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24974== +==24974== For lists of detected and suppressed errors, rerun with: -s +==24974== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestT2SwapCellKiller_valgrind.txt b/log-files/2025-02-12_21-17-58/TestT2SwapCellKiller_valgrind.txt new file mode 100644 index 000000000..0b50a3c81 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestT2SwapCellKiller_valgrind.txt @@ -0,0 +1,73 @@ +==26259== Memcheck, a memory error detector +==26259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26259== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info +==26259== Parent PID: 24057 +==26259== +==26259== +==26259== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26259== Open file descriptor 12: +==26259== at 0x10CFA07D: pipe (pipe.c:29) +==26259== by 0x196B407D: ??? +==26259== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26259== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26259== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26259== by 0xF292D38: PetscInitialize (pinit.c:924) +==26259== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26259== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26259== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26259== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26259== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26259== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26259== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26259== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26259== +==26259== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26259== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26259== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26259== by 0xF144822: ??? +==26259== by 0xF14496F: ??? +==26259== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26259== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26259== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26259== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26259== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26259== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26259== by 0xF292D38: PetscInitialize (pinit.c:924) +==26259== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26259== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26259== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26259== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26259== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26259== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26259== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26259== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) +==26259== +==26259== Open file descriptor 158: +==26259== +==26259== +==26259== Open file descriptor 155: +==26259== +==26259== +==26259== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt +==26259== +==26259== +==26259== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26259== +==26259== +==26259== +==26259== HEAP SUMMARY: +==26259== in use at exit: 618,370 bytes in 8,239 blocks +==26259== total heap usage: 77,900 allocs, 69,661 frees, 1,343,661,261 bytes allocated +==26259== +==26259== LEAK SUMMARY: +==26259== definitely lost: 0 bytes in 0 blocks +==26259== indirectly lost: 0 bytes in 0 blocks +==26259== possibly lost: 0 bytes in 0 blocks +==26259== still reachable: 56 bytes in 3 blocks +==26259== suppressed: 618,314 bytes in 8,236 blocks +==26259== Reachable blocks (those to which a pointer was found) are not shown. +==26259== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26259== +==26259== For lists of detected and suppressed errors, rerun with: -s +==26259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestTargetAreaLinearGrowthModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTargetAreaLinearGrowthModifier_valgrind.txt new file mode 100644 index 000000000..11db66911 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTargetAreaLinearGrowthModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39700== Memcheck, a memory error detector +==39700== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39700== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39700== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTargetAreaLinearGrowthModifier -malloc_debug -malloc_dump -memory_info +==39700== Parent PID: 24057 +==39700== +==39700== +==39700== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39700== Open file descriptor 12: +==39700== at 0x10CFA07D: pipe (pipe.c:29) +==39700== by 0x196B407D: ??? +==39700== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39700== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39700== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39700== by 0xF292D38: PetscInitialize (pinit.c:924) +==39700== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39700== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39700== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39700== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39700== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39700== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39700== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39700== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39700== +==39700== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39700== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==39700== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39700== by 0xF144822: ??? +==39700== by 0xF14496F: ??? +==39700== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39700== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39700== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39700== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39700== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39700== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39700== by 0xF292D38: PetscInitialize (pinit.c:924) +==39700== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39700== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39700== by 0x139DC3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==39700== by 0x13253D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39700== by 0x13583C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39700== by 0x1356DC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39700== by 0x135D73: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39700== by 0x130965: main (TestTargetAreaLinearGrowthModifier.cpp:19) +==39700== +==39700== Open file descriptor 158: +==39700== +==39700== +==39700== Open file descriptor 155: +==39700== +==39700== +==39700== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTargetAreaLinearGrowthModifier_valgrind.txt +==39700== +==39700== +==39700== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39700== +==39700== +==39700== +==39700== HEAP SUMMARY: +==39700== in use at exit: 618,370 bytes in 8,239 blocks +==39700== total heap usage: 584,184 allocs, 575,945 frees, 1,436,130,561 bytes allocated +==39700== +==39700== LEAK SUMMARY: +==39700== definitely lost: 0 bytes in 0 blocks +==39700== indirectly lost: 0 bytes in 0 blocks +==39700== possibly lost: 0 bytes in 0 blocks +==39700== still reachable: 56 bytes in 3 blocks +==39700== suppressed: 618,314 bytes in 8,236 blocks +==39700== Reachable blocks (those to which a pointer was found) are not shown. +==39700== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39700== +==39700== For lists of detected and suppressed errors, rerun with: -s +==39700== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestTetrahedralMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTetrahedralMesh_valgrind.txt new file mode 100644 index 000000000..f88b85cdb --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTetrahedralMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24536== Memcheck, a memory error detector +==24536== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24536== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24536== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTetrahedralMesh -malloc_debug -malloc_dump -memory_info +==24536== Parent PID: 24057 +==24536== +==24536== +==24536== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24536== Open file descriptor 12: +==24536== at 0x823C07D: pipe (pipe.c:29) +==24536== by 0x100CC07D: ??? +==24536== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24536== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24536== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24536== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24536== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24536== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24536== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24536== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24536== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24536== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24536== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24536== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24536== +==24536== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24536== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24536== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24536== by 0x659D822: ??? +==24536== by 0x659D96F: ??? +==24536== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24536== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24536== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24536== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24536== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24536== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24536== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24536== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24536== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24536== by 0x1518AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24536== by 0x14BB9D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24536== by 0x14F310: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24536== by 0x14F1B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24536== by 0x14F847: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24536== by 0x149FC5: main (TestTetrahedralMesh.cpp:19) +==24536== +==24536== Open file descriptor 158: +==24536== +==24536== +==24536== Open file descriptor 155: +==24536== +==24536== +==24536== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTetrahedralMesh_valgrind.txt +==24536== +==24536== +==24536== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24536== +==24536== +==24536== +==24536== HEAP SUMMARY: +==24536== in use at exit: 620,721 bytes in 8,235 blocks +==24536== total heap usage: 1,739,316 allocs, 1,731,081 frees, 1,420,007,709 bytes allocated +==24536== +==24536== LEAK SUMMARY: +==24536== definitely lost: 0 bytes in 0 blocks +==24536== indirectly lost: 0 bytes in 0 blocks +==24536== possibly lost: 0 bytes in 0 blocks +==24536== still reachable: 2,576 bytes in 3 blocks +==24536== suppressed: 618,145 bytes in 8,232 blocks +==24536== Reachable blocks (those to which a pointer was found) are not shown. +==24536== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24536== +==24536== For lists of detected and suppressed errors, rerun with: -s +==24536== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestTimeAdaptivityController_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTimeAdaptivityController_valgrind.txt new file mode 100644 index 000000000..d27158ad7 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTimeAdaptivityController_valgrind.txt @@ -0,0 +1,73 @@ +==25335== Memcheck, a memory error detector +==25335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25335== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestTimeAdaptivityController -malloc_debug -malloc_dump -memory_info +==25335== Parent PID: 24057 +==25335== +==25335== +==25335== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25335== Open file descriptor 12: +==25335== at 0x4CB407D: pipe (pipe.c:29) +==25335== by 0xAEA507D: ??? +==25335== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25335== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25335== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25335== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25335== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25335== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25335== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25335== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25335== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25335== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25335== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25335== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25335== +==25335== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25335== at 0x4CB8A1C: __open_nocancel (open64_nocancel.c:39) +==25335== by 0x4C3CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25335== by 0x493A822: ??? +==25335== by 0x493A96F: ??? +==25335== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25335== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25335== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25335== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25335== by 0x626F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25335== by 0x6208D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25335== by 0x4EFFD38: PetscInitialize (pinit.c:924) +==25335== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25335== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25335== by 0x111F68: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25335== by 0x10DB73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25335== by 0x10FE62: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25335== by 0x10FD5D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25335== by 0x110371: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25335== by 0x10C375: main (TestTimeAdaptivityController.cpp:18) +==25335== +==25335== Open file descriptor 158: +==25335== +==25335== +==25335== Open file descriptor 155: +==25335== +==25335== +==25335== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeAdaptivityController_valgrind.txt +==25335== +==25335== +==25335== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25335== +==25335== +==25335== +==25335== HEAP SUMMARY: +==25335== in use at exit: 617,874 bytes in 8,238 blocks +==25335== total heap usage: 44,909 allocs, 36,671 frees, 1,338,160,450 bytes allocated +==25335== +==25335== LEAK SUMMARY: +==25335== definitely lost: 0 bytes in 0 blocks +==25335== indirectly lost: 0 bytes in 0 blocks +==25335== possibly lost: 0 bytes in 0 blocks +==25335== still reachable: 24 bytes in 2 blocks +==25335== suppressed: 617,850 bytes in 8,236 blocks +==25335== Reachable blocks (those to which a pointer was found) are not shown. +==25335== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25335== +==25335== For lists of detected and suppressed errors, rerun with: -s +==25335== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestTimeStepper_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTimeStepper_valgrind.txt new file mode 100644 index 000000000..d6e7b632f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTimeStepper_valgrind.txt @@ -0,0 +1,73 @@ +==24284== Memcheck, a memory error detector +==24284== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24284== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24284== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimeStepper -malloc_debug -malloc_dump -memory_info +==24284== Parent PID: 24057 +==24284== +==24284== +==24284== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24284== Open file descriptor 12: +==24284== at 0x629207D: pipe (pipe.c:29) +==24284== by 0xAEA307D: ??? +==24284== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24284== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24284== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24284== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24284== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24284== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24284== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24284== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24284== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24284== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24284== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24284== by 0x11C205: main (TestTimeStepper.cpp:19) +==24284== +==24284== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24284== at 0x6296A1C: __open_nocancel (open64_nocancel.c:39) +==24284== by 0x621ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24284== by 0x493A822: ??? +==24284== by 0x493A96F: ??? +==24284== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24284== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24284== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24284== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24284== by 0x5DFA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24284== by 0x5D93D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24284== by 0x4A88D38: PetscInitialize (pinit.c:924) +==24284== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24284== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24284== by 0x123201: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24284== by 0x11DDE9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24284== by 0x120BB8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24284== by 0x120A58: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24284== by 0x1210EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24284== by 0x11C205: main (TestTimeStepper.cpp:19) +==24284== +==24284== Open file descriptor 158: +==24284== +==24284== +==24284== Open file descriptor 155: +==24284== +==24284== +==24284== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimeStepper_valgrind.txt +==24284== +==24284== +==24284== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24284== +==24284== +==24284== +==24284== HEAP SUMMARY: +==24284== in use at exit: 617,874 bytes in 8,238 blocks +==24284== total heap usage: 45,120 allocs, 36,882 frees, 1,338,211,855 bytes allocated +==24284== +==24284== LEAK SUMMARY: +==24284== definitely lost: 0 bytes in 0 blocks +==24284== indirectly lost: 0 bytes in 0 blocks +==24284== possibly lost: 0 bytes in 0 blocks +==24284== still reachable: 24 bytes in 2 blocks +==24284== suppressed: 617,850 bytes in 8,236 blocks +==24284== Reachable blocks (those to which a pointer was found) are not shown. +==24284== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24284== +==24284== For lists of detected and suppressed errors, rerun with: -s +==24284== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestTimer_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTimer_valgrind.txt new file mode 100644 index 000000000..d45de6573 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTimer_valgrind.txt @@ -0,0 +1,73 @@ +==24283== Memcheck, a memory error detector +==24283== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24283== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24283== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestTimer -malloc_debug -malloc_dump -memory_info +==24283== Parent PID: 24057 +==24283== +==24283== +==24283== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24283== Open file descriptor 12: +==24283== at 0x4D9B07D: pipe (pipe.c:29) +==24283== by 0xAEA507D: ??? +==24283== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24283== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24283== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24283== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24283== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24283== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24283== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24283== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24283== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24283== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24283== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24283== by 0x10C655: main (TestTimer.cpp:18) +==24283== +==24283== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24283== at 0x4D9FA1C: __open_nocancel (open64_nocancel.c:39) +==24283== by 0x4D23BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24283== by 0x493A822: ??? +==24283== by 0x493A96F: ??? +==24283== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24283== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24283== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24283== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24283== by 0x6356418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24283== by 0x62EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24283== by 0x4FE6D38: PetscInitialize (pinit.c:924) +==24283== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24283== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24283== by 0x112190: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24283== by 0x10DE53: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24283== by 0x11025A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24283== by 0x110155: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24283== by 0x110769: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24283== by 0x10C655: main (TestTimer.cpp:18) +==24283== +==24283== Open file descriptor 158: +==24283== +==24283== +==24283== Open file descriptor 155: +==24283== +==24283== +==24283== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTimer_valgrind.txt +==24283== +==24283== +==24283== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24283== +==24283== +==24283== +==24283== HEAP SUMMARY: +==24283== in use at exit: 617,874 bytes in 8,238 blocks +==24283== total heap usage: 44,912 allocs, 36,674 frees, 1,338,159,510 bytes allocated +==24283== +==24283== LEAK SUMMARY: +==24283== definitely lost: 0 bytes in 0 blocks +==24283== indirectly lost: 0 bytes in 0 blocks +==24283== possibly lost: 0 bytes in 0 blocks +==24283== still reachable: 24 bytes in 2 blocks +==24283== suppressed: 617,850 bytes in 8,236 blocks +==24283== Reachable blocks (those to which a pointer was found) are not shown. +==24283== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24283== +==24283== For lists of detected and suppressed errors, rerun with: -s +==24283== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestToroidal2dMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestToroidal2dMesh_valgrind.txt new file mode 100644 index 000000000..46ff99e0d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestToroidal2dMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24599== Memcheck, a memory error detector +==24599== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24599== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24599== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dMesh -malloc_debug -malloc_dump -memory_info +==24599== Parent PID: 24057 +==24599== +==24599== +==24599== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24599== Open file descriptor 12: +==24599== at 0x823C07D: pipe (pipe.c:29) +==24599== by 0x100CC07D: ??? +==24599== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24599== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24599== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24599== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24599== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24599== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24599== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24599== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24599== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24599== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24599== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24599== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24599== +==24599== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24599== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24599== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24599== by 0x659D822: ??? +==24599== by 0x659D96F: ??? +==24599== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24599== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24599== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24599== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24599== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24599== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24599== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24599== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24599== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24599== by 0x125B47: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24599== by 0x120A23: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24599== by 0x123378: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24599== by 0x123274: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24599== by 0x123887: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24599== by 0x11F225: main (TestToroidal2dMesh.cpp:18) +==24599== +==24599== Open file descriptor 158: +==24599== +==24599== +==24599== Open file descriptor 155: +==24599== +==24599== +==24599== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dMesh_valgrind.txt +==24599== +==24599== +==24599== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24599== +==24599== +==24599== +==24599== HEAP SUMMARY: +==24599== in use at exit: 618,242 bytes in 8,238 blocks +==24599== total heap usage: 165,851 allocs, 157,613 frees, 1,352,688,873 bytes allocated +==24599== +==24599== LEAK SUMMARY: +==24599== definitely lost: 0 bytes in 0 blocks +==24599== indirectly lost: 0 bytes in 0 blocks +==24599== possibly lost: 0 bytes in 0 blocks +==24599== still reachable: 24 bytes in 2 blocks +==24599== suppressed: 618,218 bytes in 8,236 blocks +==24599== Reachable blocks (those to which a pointer was found) are not shown. +==24599== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24599== +==24599== For lists of detected and suppressed errors, rerun with: -s +==24599== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestToroidal2dVertexMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestToroidal2dVertexMesh_valgrind.txt new file mode 100644 index 000000000..15d5f9efd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestToroidal2dVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24757== Memcheck, a memory error detector +==24757== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24757== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24757== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidal2dVertexMesh -malloc_debug -malloc_dump -memory_info +==24757== Parent PID: 24057 +==24757== +==24757== +==24757== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24757== Open file descriptor 12: +==24757== at 0x823C07D: pipe (pipe.c:29) +==24757== by 0x100CC07D: ??? +==24757== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24757== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24757== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24757== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24757== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24757== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24757== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24757== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24757== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24757== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24757== +==24757== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24757== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24757== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24757== by 0x659D822: ??? +==24757== by 0x659D96F: ??? +==24757== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24757== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24757== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24757== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24757== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24757== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24757== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24757== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24757== by 0x12A981: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24757== by 0x12519D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24757== by 0x1281A6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24757== by 0x128046: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24757== by 0x1286DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24757== by 0x1235C5: main (TestToroidal2dVertexMesh.cpp:19) +==24757== +==24757== Open file descriptor 158: +==24757== +==24757== +==24757== Open file descriptor 155: +==24757== +==24757== +==24757== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidal2dVertexMesh_valgrind.txt +==24757== +==24757== +==24757== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24757== +==24757== +==24757== +==24757== HEAP SUMMARY: +==24757== in use at exit: 618,242 bytes in 8,238 blocks +==24757== total heap usage: 145,233 allocs, 136,995 frees, 1,346,880,885 bytes allocated +==24757== +==24757== LEAK SUMMARY: +==24757== definitely lost: 0 bytes in 0 blocks +==24757== indirectly lost: 0 bytes in 0 blocks +==24757== possibly lost: 0 bytes in 0 blocks +==24757== still reachable: 24 bytes in 2 blocks +==24757== suppressed: 618,218 bytes in 8,236 blocks +==24757== Reachable blocks (those to which a pointer was found) are not shown. +==24757== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24757== +==24757== For lists of detected and suppressed errors, rerun with: -s +==24757== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestToroidalHoneycombMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestToroidalHoneycombMeshGenerator_valgrind.txt new file mode 100644 index 000000000..ebaa71f08 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestToroidalHoneycombMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24609== Memcheck, a memory error detector +==24609== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24609== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24609== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombMeshGenerator -malloc_debug -malloc_dump -memory_info +==24609== Parent PID: 24057 +==24609== +==24609== +==24609== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24609== Open file descriptor 12: +==24609== at 0x811107D: pipe (pipe.c:29) +==24609== by 0x100CC07D: ??? +==24609== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24609== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x6686D38: PetscInitialize (pinit.c:924) +==24609== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24609== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24609== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24609== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24609== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24609== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24609== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24609== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24609== +==24609== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24609== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24609== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24609== by 0x791B822: ??? +==24609== by 0x791B96F: ??? +==24609== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24609== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24609== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24609== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24609== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24609== by 0x6686D38: PetscInitialize (pinit.c:924) +==24609== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24609== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24609== by 0x11717D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24609== by 0x1125CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24609== by 0x114F48: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24609== by 0x114DE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24609== by 0x11547F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24609== by 0x1109F5: main (TestToroidalHoneycombMeshGenerator.cpp:19) +==24609== +==24609== Open file descriptor 158: +==24609== +==24609== +==24609== Open file descriptor 155: +==24609== +==24609== +==24609== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombMeshGenerator_valgrind.txt +==24609== +==24609== +==24609== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24609== +==24609== +==24609== +==24609== HEAP SUMMARY: +==24609== in use at exit: 618,242 bytes in 8,238 blocks +==24609== total heap usage: 105,622 allocs, 97,384 frees, 1,342,905,729 bytes allocated +==24609== +==24609== LEAK SUMMARY: +==24609== definitely lost: 0 bytes in 0 blocks +==24609== indirectly lost: 0 bytes in 0 blocks +==24609== possibly lost: 0 bytes in 0 blocks +==24609== still reachable: 24 bytes in 2 blocks +==24609== suppressed: 618,218 bytes in 8,236 blocks +==24609== Reachable blocks (those to which a pointer was found) are not shown. +==24609== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24609== +==24609== For lists of detected and suppressed errors, rerun with: -s +==24609== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..b751392e4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24758== Memcheck, a memory error detector +==24758== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24758== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24758== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestToroidalHoneycombVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24758== Parent PID: 24057 +==24758== +==24758== +==24758== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24758== Open file descriptor 12: +==24758== at 0x811107D: pipe (pipe.c:29) +==24758== by 0x100CC07D: ??? +==24758== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24758== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24758== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24758== by 0x6686D38: PetscInitialize (pinit.c:924) +==24758== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24758== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24758== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24758== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24758== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24758== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24758== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24758== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24758== +==24758== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24758== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24758== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24758== by 0x791B822: ??? +==24758== by 0x791B96F: ??? +==24758== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24758== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24758== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24758== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24758== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24758== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24758== by 0x6686D38: PetscInitialize (pinit.c:924) +==24758== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24758== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24758== by 0x11A0CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24758== by 0x11394D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24758== by 0x116246: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24758== by 0x1160E6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24758== by 0x11677D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24758== by 0x111D75: main (TestToroidalHoneycombVertexMeshGenerator.cpp:19) +==24758== +==24758== Open file descriptor 158: +==24758== +==24758== +==24758== Open file descriptor 155: +==24758== +==24758== +==24758== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestToroidalHoneycombVertexMeshGenerator_valgrind.txt +==24758== +==24758== +==24758== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24758== +==24758== +==24758== +==24758== HEAP SUMMARY: +==24758== in use at exit: 618,242 bytes in 8,238 blocks +==24758== total heap usage: 48,581 allocs, 40,343 frees, 1,338,603,392 bytes allocated +==24758== +==24758== LEAK SUMMARY: +==24758== definitely lost: 0 bytes in 0 blocks +==24758== indirectly lost: 0 bytes in 0 blocks +==24758== possibly lost: 0 bytes in 0 blocks +==24758== still reachable: 24 bytes in 2 blocks +==24758== suppressed: 618,218 bytes in 8,236 blocks +==24758== Reachable blocks (those to which a pointer was found) are not shown. +==24758== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24758== +==24758== For lists of detected and suppressed errors, rerun with: -s +==24758== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestTransformations_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTransformations_valgrind.txt new file mode 100644 index 000000000..51d96f7e1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTransformations_valgrind.txt @@ -0,0 +1,73 @@ +==24547== Memcheck, a memory error detector +==24547== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24547== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24547== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info +==24547== Parent PID: 24057 +==24547== +==24547== +==24547== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24547== Open file descriptor 12: +==24547== at 0x6D4307D: pipe (pipe.c:29) +==24547== by 0x100CC07D: ??? +==24547== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24547== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x701FD38: PetscInitialize (pinit.c:924) +==24547== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24547== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24547== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24547== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24547== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24547== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24547== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24547== by 0x11FEB5: main (TestTransformations.cpp:19) +==24547== +==24547== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24547== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24547== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24547== by 0x659D822: ??? +==24547== by 0x659D96F: ??? +==24547== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24547== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24547== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24547== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24547== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24547== by 0x701FD38: PetscInitialize (pinit.c:924) +==24547== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24547== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24547== by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24547== by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24547== by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24547== by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24547== by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24547== by 0x11FEB5: main (TestTransformations.cpp:19) +==24547== +==24547== Open file descriptor 158: +==24547== +==24547== +==24547== Open file descriptor 155: +==24547== +==24547== +==24547== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt +==24547== +==24547== +==24547== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24547== +==24547== +==24547== +==24547== HEAP SUMMARY: +==24547== in use at exit: 618,242 bytes in 8,238 blocks +==24547== total heap usage: 113,753 allocs, 105,515 frees, 1,343,578,145 bytes allocated +==24547== +==24547== LEAK SUMMARY: +==24547== definitely lost: 0 bytes in 0 blocks +==24547== indirectly lost: 0 bytes in 0 blocks +==24547== possibly lost: 0 bytes in 0 blocks +==24547== still reachable: 24 bytes in 2 blocks +==24547== suppressed: 618,218 bytes in 8,236 blocks +==24547== Reachable blocks (those to which a pointer was found) are not shown. +==24547== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24547== +==24547== For lists of detected and suppressed errors, rerun with: -s +==24547== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestTrianglesMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTrianglesMeshReader_valgrind.txt new file mode 100644 index 000000000..16ae0a34b --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTrianglesMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24643== Memcheck, a memory error detector +==24643== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24643== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24643== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTrianglesMeshReader -malloc_debug -malloc_dump -memory_info +==24643== Parent PID: 24057 +==24643== +==24643== +==24643== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24643== Open file descriptor 12: +==24643== at 0x811107D: pipe (pipe.c:29) +==24643== by 0x100CC07D: ??? +==24643== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24643== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x6686D38: PetscInitialize (pinit.c:924) +==24643== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24643== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24643== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24643== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24643== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24643== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24643== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24643== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24643== +==24643== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24643== at 0x8115A1C: __open_nocancel (open64_nocancel.c:39) +==24643== by 0x8099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24643== by 0x791B822: ??? +==24643== by 0x791B96F: ??? +==24643== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24643== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24643== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24643== by 0x6686D38: PetscInitialize (pinit.c:924) +==24643== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24643== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24643== by 0x124FBD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24643== by 0x11FF0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24643== by 0x122F54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24643== by 0x122DF4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24643== by 0x12348B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24643== by 0x11E335: main (TestTrianglesMeshReader.cpp:19) +==24643== +==24643== Open file descriptor 158: +==24643== +==24643== +==24643== Open file descriptor 155: +==24643== +==24643== +==24643== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTrianglesMeshReader_valgrind.txt +==24643== +==24643== +==24643== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24643== +==24643== +==24643== +==24643== HEAP SUMMARY: +==24643== in use at exit: 618,242 bytes in 8,238 blocks +==24643== total heap usage: 149,660 allocs, 141,422 frees, 1,349,786,097 bytes allocated +==24643== +==24643== LEAK SUMMARY: +==24643== definitely lost: 0 bytes in 0 blocks +==24643== indirectly lost: 0 bytes in 0 blocks +==24643== possibly lost: 0 bytes in 0 blocks +==24643== still reachable: 24 bytes in 2 blocks +==24643== suppressed: 618,218 bytes in 8,236 blocks +==24643== Reachable blocks (those to which a pointer was found) are not shown. +==24643== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24643== +==24643== For lists of detected and suppressed errors, rerun with: -s +==24643== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestTysonNovak2001OdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestTysonNovak2001OdeSystem_valgrind.txt new file mode 100644 index 000000000..f9f6d11fd --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestTysonNovak2001OdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==26006== Memcheck, a memory error detector +==26006== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26006== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26006== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info +==26006== Parent PID: 24057 +==26006== +==26006== +==26006== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26006== Open file descriptor 12: +==26006== at 0xDB5007D: pipe (pipe.c:29) +==26006== by 0x196B507D: ??? +==26006== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26006== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26006== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26006== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==26006== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26006== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26006== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26006== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26006== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26006== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26006== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26006== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==26006== +==26006== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26006== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) +==26006== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26006== by 0xD796822: ??? +==26006== by 0xD79696F: ??? +==26006== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26006== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26006== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26006== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26006== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26006== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26006== by 0xFDEAD38: PetscInitialize (pinit.c:924) +==26006== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26006== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26006== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==26006== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26006== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26006== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26006== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26006== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) +==26006== +==26006== Open file descriptor 158: +==26006== +==26006== +==26006== Open file descriptor 155: +==26006== +==26006== +==26006== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt +==26006== +==26006== +==26006== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26006== +==26006== +==26006== +==26006== HEAP SUMMARY: +==26006== in use at exit: 618,338 bytes in 8,238 blocks +==26006== total heap usage: 58,418 allocs, 50,180 frees, 1,339,317,031 bytes allocated +==26006== +==26006== LEAK SUMMARY: +==26006== definitely lost: 0 bytes in 0 blocks +==26006== indirectly lost: 0 bytes in 0 blocks +==26006== possibly lost: 0 bytes in 0 blocks +==26006== still reachable: 24 bytes in 2 blocks +==26006== suppressed: 618,314 bytes in 8,236 blocks +==26006== Reachable blocks (those to which a pointer was found) are not shown. +==26006== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26006== +==26006== For lists of detected and suppressed errors, rerun with: -s +==26006== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestUblasCustomFunctions_valgrind.txt b/log-files/2025-02-12_21-17-58/TestUblasCustomFunctions_valgrind.txt new file mode 100644 index 000000000..013e697b3 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestUblasCustomFunctions_valgrind.txt @@ -0,0 +1,73 @@ +==24415== Memcheck, a memory error detector +==24415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestUblasCustomFunctions -malloc_debug -malloc_dump -memory_info +==24415== Parent PID: 24057 +==24415== +==24415== +==24415== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24415== Open file descriptor 12: +==24415== at 0x4E2A07D: pipe (pipe.c:29) +==24415== by 0xAF3907D: ??? +==24415== by 0x8A4D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24415== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24415== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24415== by 0x5075D38: PetscInitialize (pinit.c:924) +==24415== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24415== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24415== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24415== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24415== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24415== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24415== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24415== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24415== +==24415== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24415== at 0x4E2EA1C: __open_nocancel (open64_nocancel.c:39) +==24415== by 0x4DB2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24415== by 0x49C9822: ??? +==24415== by 0x49C996F: ??? +==24415== by 0x8AF26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24415== by 0x8AF2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24415== by 0x8AA8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24415== by 0x8A4D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24415== by 0x63E7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24415== by 0x6380D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24415== by 0x5075D38: PetscInitialize (pinit.c:924) +==24415== by 0x49891D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24415== by 0x4989227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24415== by 0x11B27E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24415== by 0x1164ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24415== by 0x118F42: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24415== by 0x118DE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24415== by 0x119479: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24415== by 0x114915: main (TestUblasCustomFunctions.cpp:19) +==24415== +==24415== Open file descriptor 158: +==24415== +==24415== +==24415== Open file descriptor 155: +==24415== +==24415== +==24415== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUblasCustomFunctions_valgrind.txt +==24415== +==24415== +==24415== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24415== +==24415== +==24415== +==24415== HEAP SUMMARY: +==24415== in use at exit: 617,890 bytes in 8,238 blocks +==24415== total heap usage: 44,930 allocs, 36,692 frees, 1,338,162,675 bytes allocated +==24415== +==24415== LEAK SUMMARY: +==24415== definitely lost: 0 bytes in 0 blocks +==24415== indirectly lost: 0 bytes in 0 blocks +==24415== possibly lost: 0 bytes in 0 blocks +==24415== still reachable: 24 bytes in 2 blocks +==24415== suppressed: 617,866 bytes in 8,236 blocks +==24415== Reachable blocks (those to which a pointer was found) are not shown. +==24415== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24415== +==24415== For lists of detected and suppressed errors, rerun with: -s +==24415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestUniformGridRandomFieldGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestUniformGridRandomFieldGenerator_valgrind.txt new file mode 100644 index 000000000..b35c17478 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestUniformGridRandomFieldGenerator_valgrind.txt @@ -0,0 +1,36 @@ +==24967== Memcheck, a memory error detector +==24967== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24967== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24967== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestUniformGridRandomFieldGenerator -malloc_debug -malloc_dump -memory_info +==24967== Parent PID: 24057 +==24967== +==24967== +==24967== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24967== Open file descriptor 158: +==24967== +==24967== +==24967== Open file descriptor 155: +==24967== +==24967== +==24967== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestUniformGridRandomFieldGenerator_valgrind.txt +==24967== +==24967== +==24967== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24967== +==24967== +==24967== +==24967== HEAP SUMMARY: +==24967== in use at exit: 2,576 bytes in 3 blocks +==24967== total heap usage: 5,572 allocs, 5,569 frees, 617,082 bytes allocated +==24967== +==24967== LEAK SUMMARY: +==24967== definitely lost: 0 bytes in 0 blocks +==24967== indirectly lost: 0 bytes in 0 blocks +==24967== possibly lost: 0 bytes in 0 blocks +==24967== still reachable: 2,576 bytes in 3 blocks +==24967== suppressed: 0 bytes in 0 blocks +==24967== Reachable blocks (those to which a pointer was found) are not shown. +==24967== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24967== +==24967== For lists of detected and suppressed errors, rerun with: -s +==24967== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..7d1e32510 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40589== Memcheck, a memory error detector +==40589== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40589== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40589== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40589== Parent PID: 24057 +==40589== +==40589== +==40589== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40589== Open file descriptor 12: +==40589== at 0x127FC07D: pipe (pipe.c:29) +==40589== by 0x1B37607D: ??? +==40589== by 0x165344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40589== by 0x12104418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40589== by 0x1209DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40589== by 0x10D94D38: PetscInitialize (pinit.c:924) +==40589== by 0x10C061D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40589== by 0x10C06227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40589== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40589== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40589== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40589== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40589== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40589== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40589== +==40589== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40589== at 0x12800A1C: __open_nocancel (open64_nocancel.c:39) +==40589== by 0x12784BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40589== by 0x10C46822: ??? +==40589== by 0x10C4696F: ??? +==40589== by 0x165D96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40589== by 0x165D9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40589== by 0x1658F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40589== by 0x165342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40589== by 0x12104418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40589== by 0x1209DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40589== by 0x10D94D38: PetscInitialize (pinit.c:924) +==40589== by 0x10C061D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40589== by 0x10C06227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40589== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40589== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40589== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40589== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40589== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40589== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) +==40589== +==40589== Open file descriptor 158: +==40589== +==40589== +==40589== Open file descriptor 155: +==40589== +==40589== +==40589== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt +==40589== +==40589== +==40589== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40589== +==40589== +==40589== +==40589== HEAP SUMMARY: +==40589== in use at exit: 618,354 bytes in 8,238 blocks +==40589== total heap usage: 519,314 allocs, 511,076 frees, 1,547,102,297 bytes allocated +==40589== +==40589== LEAK SUMMARY: +==40589== definitely lost: 0 bytes in 0 blocks +==40589== indirectly lost: 0 bytes in 0 blocks +==40589== possibly lost: 0 bytes in 0 blocks +==40589== still reachable: 24 bytes in 2 blocks +==40589== suppressed: 618,330 bytes in 8,236 blocks +==40589== Reachable blocks (those to which a pointer was found) are not shown. +==40589== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40589== +==40589== For lists of detected and suppressed errors, rerun with: -s +==40589== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestVentilationProblem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVentilationProblem_valgrind.txt new file mode 100644 index 000000000..6f60bda9e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVentilationProblem_valgrind.txt @@ -0,0 +1,73 @@ +==41426== Memcheck, a memory error detector +==41426== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==41426== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==41426== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestVentilationProblem -malloc_debug -malloc_dump -memory_info +==41426== Parent PID: 24057 +==41426== +==41426== +==41426== FILE DESCRIPTORS: 9 open (3 std) at exit. +==41426== Open file descriptor 12: +==41426== at 0x6E6107D: pipe (pipe.c:29) +==41426== by 0x107AC07D: ??? +==41426== by 0xC0204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41426== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41426== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41426== by 0x706CD38: PetscInitialize (pinit.c:924) +==41426== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41426== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41426== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41426== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41426== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41426== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41426== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41426== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41426== +==41426== Open file descriptor 8: /dev/shm/open_mpi.0000 +==41426== at 0x6E65A1C: __open_nocancel (open64_nocancel.c:39) +==41426== by 0x6DE9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==41426== by 0x66BD822: ??? +==41426== by 0x66BD96F: ??? +==41426== by 0xC0C56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41426== by 0xC0C5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41426== by 0xC07B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==41426== by 0xC0202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==41426== by 0x83DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41426== by 0x8375D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==41426== by 0x706CD38: PetscInitialize (pinit.c:924) +==41426== by 0x667D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==41426== by 0x667D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==41426== by 0x11769E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==41426== by 0x1128D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==41426== by 0x115638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==41426== by 0x1154D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==41426== by 0x115B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==41426== by 0x110B55: main (TestVentilationProblem.cpp:19) +==41426== +==41426== Open file descriptor 158: +==41426== +==41426== +==41426== Open file descriptor 155: +==41426== +==41426== +==41426== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVentilationProblem_valgrind.txt +==41426== +==41426== +==41426== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==41426== +==41426== +==41426== +==41426== HEAP SUMMARY: +==41426== in use at exit: 618,265 bytes in 8,234 blocks +==41426== total heap usage: 5,806,636 allocs, 5,798,402 frees, 1,825,960,935 bytes allocated +==41426== +==41426== LEAK SUMMARY: +==41426== definitely lost: 0 bytes in 0 blocks +==41426== indirectly lost: 0 bytes in 0 blocks +==41426== possibly lost: 0 bytes in 0 blocks +==41426== still reachable: 24 bytes in 2 blocks +==41426== suppressed: 618,241 bytes in 8,232 blocks +==41426== Reachable blocks (those to which a pointer was found) are not shown. +==41426== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==41426== +==41426== For lists of detected and suppressed errors, rerun with: -s +==41426== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestVertexBasedCellPopulationForCrypt_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexBasedCellPopulationForCrypt_valgrind.txt new file mode 100644 index 000000000..cc6f586a5 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexBasedCellPopulationForCrypt_valgrind.txt @@ -0,0 +1,73 @@ +==40656== Memcheck, a memory error detector +==40656== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40656== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40656== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info +==40656== Parent PID: 24057 +==40656== +==40656== +==40656== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40656== Open file descriptor 12: +==40656== at 0x1257807D: pipe (pipe.c:29) +==40656== by 0x1B37607D: ??? +==40656== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40656== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40656== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40656== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40656== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40656== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40656== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40656== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40656== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40656== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40656== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40656== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40656== +==40656== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40656== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) +==40656== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40656== by 0x11D82822: ??? +==40656== by 0x11D8296F: ??? +==40656== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40656== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40656== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40656== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40656== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40656== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40656== by 0x10AEDD38: PetscInitialize (pinit.c:924) +==40656== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40656== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40656== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40656== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40656== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40656== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40656== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40656== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) +==40656== +==40656== Open file descriptor 158: +==40656== +==40656== +==40656== Open file descriptor 155: +==40656== +==40656== +==40656== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt +==40656== +==40656== +==40656== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40656== +==40656== +==40656== +==40656== HEAP SUMMARY: +==40656== in use at exit: 618,466 bytes in 8,240 blocks +==40656== total heap usage: 53,904 allocs, 45,664 frees, 1,338,963,895 bytes allocated +==40656== +==40656== LEAK SUMMARY: +==40656== definitely lost: 0 bytes in 0 blocks +==40656== indirectly lost: 0 bytes in 0 blocks +==40656== possibly lost: 0 bytes in 0 blocks +==40656== still reachable: 136 bytes in 4 blocks +==40656== suppressed: 618,330 bytes in 8,236 blocks +==40656== Reachable blocks (those to which a pointer was found) are not shown. +==40656== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40656== +==40656== For lists of detected and suppressed errors, rerun with: -s +==40656== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestVertexBasedCellPopulation_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexBasedCellPopulation_valgrind.txt new file mode 100644 index 000000000..c95c9c905 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexBasedCellPopulation_valgrind.txt @@ -0,0 +1,73 @@ +==26267== Memcheck, a memory error detector +==26267== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26267== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26267== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info +==26267== Parent PID: 24057 +==26267== +==26267== +==26267== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26267== Open file descriptor 12: +==26267== at 0x10CFA07D: pipe (pipe.c:29) +==26267== by 0x196B407D: ??? +==26267== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26267== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26267== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26267== by 0xF292D38: PetscInitialize (pinit.c:924) +==26267== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26267== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26267== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26267== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26267== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26267== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26267== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26267== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26267== +==26267== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26267== at 0x10CFEA1C: __open_nocancel (open64_nocancel.c:39) +==26267== by 0x10C82BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26267== by 0xF144822: ??? +==26267== by 0xF14496F: ??? +==26267== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26267== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26267== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26267== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26267== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26267== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26267== by 0xF292D38: PetscInitialize (pinit.c:924) +==26267== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26267== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26267== by 0x3F7529: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26267== by 0x3EC0B9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26267== by 0x3F20D4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26267== by 0x3F1F74: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26267== by 0x3F260B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26267== by 0x3EA4D5: main (TestVertexBasedCellPopulation.cpp:19) +==26267== +==26267== Open file descriptor 158: +==26267== +==26267== +==26267== Open file descriptor 155: +==26267== +==26267== +==26267== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulation_valgrind.txt +==26267== +==26267== +==26267== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26267== +==26267== +==26267== +==26267== HEAP SUMMARY: +==26267== in use at exit: 618,370 bytes in 8,239 blocks +==26267== total heap usage: 171,092 allocs, 162,853 frees, 1,350,453,567 bytes allocated +==26267== +==26267== LEAK SUMMARY: +==26267== definitely lost: 0 bytes in 0 blocks +==26267== indirectly lost: 0 bytes in 0 blocks +==26267== possibly lost: 0 bytes in 0 blocks +==26267== still reachable: 56 bytes in 3 blocks +==26267== suppressed: 618,314 bytes in 8,236 blocks +==26267== Reachable blocks (those to which a pointer was found) are not shown. +==26267== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26267== +==26267== For lists of detected and suppressed errors, rerun with: -s +==26267== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestVertexBasedDivisionRules_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexBasedDivisionRules_valgrind.txt new file mode 100644 index 000000000..2f8d92e33 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexBasedDivisionRules_valgrind.txt @@ -0,0 +1,73 @@ +==26275== Memcheck, a memory error detector +==26275== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==26275== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==26275== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVertexBasedDivisionRules -malloc_debug -malloc_dump -memory_info +==26275== Parent PID: 24057 +==26275== +==26275== +==26275== FILE DESCRIPTORS: 9 open (3 std) at exit. +==26275== Open file descriptor 12: +==26275== at 0x10DE107D: pipe (pipe.c:29) +==26275== by 0x196B407D: ??? +==26275== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26275== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26275== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26275== by 0xF292D38: PetscInitialize (pinit.c:924) +==26275== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26275== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26275== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26275== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26275== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26275== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26275== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26275== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26275== +==26275== Open file descriptor 8: /dev/shm/open_mpi.0000 +==26275== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) +==26275== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==26275== by 0xF144822: ??? +==26275== by 0xF14496F: ??? +==26275== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26275== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26275== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==26275== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==26275== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26275== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==26275== by 0xF292D38: PetscInitialize (pinit.c:924) +==26275== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==26275== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==26275== by 0x147723: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==26275== by 0x14201D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==26275== by 0x144D0A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==26275== by 0x144BAA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==26275== by 0x145241: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==26275== by 0x140445: main (TestVertexBasedDivisionRules.cpp:19) +==26275== +==26275== Open file descriptor 158: +==26275== +==26275== +==26275== Open file descriptor 155: +==26275== +==26275== +==26275== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedDivisionRules_valgrind.txt +==26275== +==26275== +==26275== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==26275== +==26275== +==26275== +==26275== HEAP SUMMARY: +==26275== in use at exit: 618,370 bytes in 8,239 blocks +==26275== total heap usage: 54,152 allocs, 45,913 frees, 1,339,150,913 bytes allocated +==26275== +==26275== LEAK SUMMARY: +==26275== definitely lost: 0 bytes in 0 blocks +==26275== indirectly lost: 0 bytes in 0 blocks +==26275== possibly lost: 0 bytes in 0 blocks +==26275== still reachable: 56 bytes in 3 blocks +==26275== suppressed: 618,314 bytes in 8,236 blocks +==26275== Reachable blocks (those to which a pointer was found) are not shown. +==26275== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==26275== +==26275== For lists of detected and suppressed errors, rerun with: -s +==26275== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestVertexCryptBoundaryForce_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexCryptBoundaryForce_valgrind.txt new file mode 100644 index 000000000..91fe823b2 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexCryptBoundaryForce_valgrind.txt @@ -0,0 +1,73 @@ +==40550== Memcheck, a memory error detector +==40550== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40550== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40550== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info +==40550== Parent PID: 24057 +==40550== +==40550== +==40550== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40550== Open file descriptor 12: +==40550== at 0x110C107D: pipe (pipe.c:29) +==40550== by 0x1B37507D: ??? +==40550== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40550== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40550== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40550== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40550== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40550== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40550== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40550== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40550== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40550== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40550== +==40550== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40550== at 0x110C5A1C: __open_nocancel (open64_nocancel.c:39) +==40550== by 0x11049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40550== by 0x10A04822: ??? +==40550== by 0x10A0496F: ??? +==40550== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40550== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40550== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40550== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40550== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40550== by 0x11AD8D38: PetscInitialize (pinit.c:924) +==40550== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40550== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40550== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==40550== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40550== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40550== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40550== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40550== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) +==40550== +==40550== Open file descriptor 158: +==40550== +==40550== +==40550== Open file descriptor 155: +==40550== +==40550== +==40550== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt +==40550== +==40550== +==40550== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40550== +==40550== +==40550== +==40550== HEAP SUMMARY: +==40550== in use at exit: 618,386 bytes in 8,239 blocks +==40550== total heap usage: 56,514 allocs, 48,275 frees, 1,339,182,156 bytes allocated +==40550== +==40550== LEAK SUMMARY: +==40550== definitely lost: 0 bytes in 0 blocks +==40550== indirectly lost: 0 bytes in 0 blocks +==40550== possibly lost: 0 bytes in 0 blocks +==40550== still reachable: 56 bytes in 3 blocks +==40550== suppressed: 618,330 bytes in 8,236 blocks +==40550== Reachable blocks (those to which a pointer was found) are not shown. +==40550== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40550== +==40550== For lists of detected and suppressed errors, rerun with: -s +==40550== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36) diff --git a/log-files/2025-02-12_21-17-58/TestVertexElement_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexElement_valgrind.txt new file mode 100644 index 000000000..ac3a3c4c6 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexElement_valgrind.txt @@ -0,0 +1,73 @@ +==24771== Memcheck, a memory error detector +==24771== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24771== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24771== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexElement -malloc_debug -malloc_dump -memory_info +==24771== Parent PID: 24057 +==24771== +==24771== +==24771== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24771== Open file descriptor 12: +==24771== at 0x69FE07D: pipe (pipe.c:29) +==24771== by 0x100CC07D: ??? +==24771== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24771== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24771== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24771== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24771== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24771== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24771== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24771== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24771== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24771== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24771== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24771== by 0x117C15: main (TestVertexElement.cpp:18) +==24771== +==24771== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24771== at 0x6A02A1C: __open_nocancel (open64_nocancel.c:39) +==24771== by 0x6986BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24771== by 0x659D822: ??? +==24771== by 0x659D96F: ??? +==24771== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24771== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24771== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24771== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24771== by 0x804A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24771== by 0x7FE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24771== by 0x6CDAD38: PetscInitialize (pinit.c:924) +==24771== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24771== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24771== by 0x11E098: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24771== by 0x119413: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24771== by 0x11C02C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24771== by 0x11BF27: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24771== by 0x11C53B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24771== by 0x117C15: main (TestVertexElement.cpp:18) +==24771== +==24771== Open file descriptor 158: +==24771== +==24771== +==24771== Open file descriptor 155: +==24771== +==24771== +==24771== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexElement_valgrind.txt +==24771== +==24771== +==24771== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24771== +==24771== +==24771== +==24771== HEAP SUMMARY: +==24771== in use at exit: 618,242 bytes in 8,238 blocks +==24771== total heap usage: 47,567 allocs, 39,329 frees, 1,338,396,486 bytes allocated +==24771== +==24771== LEAK SUMMARY: +==24771== definitely lost: 0 bytes in 0 blocks +==24771== indirectly lost: 0 bytes in 0 blocks +==24771== possibly lost: 0 bytes in 0 blocks +==24771== still reachable: 24 bytes in 2 blocks +==24771== suppressed: 618,218 bytes in 8,236 blocks +==24771== Reachable blocks (those to which a pointer was found) are not shown. +==24771== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24771== +==24771== For lists of detected and suppressed errors, rerun with: -s +==24771== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestVertexMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexMeshReader_valgrind.txt new file mode 100644 index 000000000..de8b6442a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24789== Memcheck, a memory error detector +==24789== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24789== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24789== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshReader -malloc_debug -malloc_dump -memory_info +==24789== Parent PID: 24057 +==24789== +==24789== +==24789== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24789== Open file descriptor 12: +==24789== at 0x691707D: pipe (pipe.c:29) +==24789== by 0x100CC07D: ??? +==24789== by 0xBA174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24789== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24789== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24789== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24789== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24789== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24789== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24789== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24789== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24789== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24789== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24789== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24789== +==24789== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24789== at 0x691BA1C: __open_nocancel (open64_nocancel.c:39) +==24789== by 0x689FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24789== by 0x659D822: ??? +==24789== by 0x659D96F: ??? +==24789== by 0xBABC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24789== by 0xBABC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24789== by 0xBA72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24789== by 0xBA172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24789== by 0x7F63418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24789== by 0x7EFCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24789== by 0x6BF1D38: PetscInitialize (pinit.c:924) +==24789== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24789== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24789== by 0x1205C0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24789== by 0x11B52D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24789== by 0x11E602: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24789== by 0x11E4A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24789== by 0x11EB39: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24789== by 0x119955: main (TestVertexMeshReader.cpp:19) +==24789== +==24789== Open file descriptor 158: +==24789== +==24789== +==24789== Open file descriptor 155: +==24789== +==24789== +==24789== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshReader_valgrind.txt +==24789== +==24789== +==24789== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24789== +==24789== +==24789== +==24789== HEAP SUMMARY: +==24789== in use at exit: 618,242 bytes in 8,238 blocks +==24789== total heap usage: 47,846 allocs, 39,608 frees, 1,338,788,888 bytes allocated +==24789== +==24789== LEAK SUMMARY: +==24789== definitely lost: 0 bytes in 0 blocks +==24789== indirectly lost: 0 bytes in 0 blocks +==24789== possibly lost: 0 bytes in 0 blocks +==24789== still reachable: 24 bytes in 2 blocks +==24789== suppressed: 618,218 bytes in 8,236 blocks +==24789== Reachable blocks (those to which a pointer was found) are not shown. +==24789== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24789== +==24789== For lists of detected and suppressed errors, rerun with: -s +==24789== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestVertexMeshWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexMeshWriter_valgrind.txt new file mode 100644 index 000000000..afe555d89 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexMeshWriter_valgrind.txt @@ -0,0 +1,73 @@ +==24792== Memcheck, a memory error detector +==24792== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24792== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24792== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMeshWriter -malloc_debug -malloc_dump -memory_info +==24792== Parent PID: 24057 +==24792== +==24792== +==24792== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24792== Open file descriptor 12: +==24792== at 0x81F807D: pipe (pipe.c:29) +==24792== by 0x100CC07D: ??? +==24792== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24792== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x6686D38: PetscInitialize (pinit.c:924) +==24792== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24792== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24792== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24792== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24792== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24792== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24792== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24792== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24792== +==24792== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24792== at 0x81FCA1C: __open_nocancel (open64_nocancel.c:39) +==24792== by 0x8180BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24792== by 0x791B822: ??? +==24792== by 0x791B96F: ??? +==24792== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24792== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24792== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24792== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24792== by 0x7A1B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x79B4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24792== by 0x6686D38: PetscInitialize (pinit.c:924) +==24792== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24792== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24792== by 0x12CC41: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24792== by 0x1260AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24792== by 0x128CC8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24792== by 0x128B68: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24792== by 0x1291FF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24792== by 0x1244D5: main (TestVertexMeshWriter.cpp:19) +==24792== +==24792== Open file descriptor 158: +==24792== +==24792== +==24792== Open file descriptor 155: +==24792== +==24792== +==24792== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMeshWriter_valgrind.txt +==24792== +==24792== +==24792== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24792== +==24792== +==24792== +==24792== HEAP SUMMARY: +==24792== in use at exit: 618,242 bytes in 8,238 blocks +==24792== total heap usage: 63,667 allocs, 55,429 frees, 1,341,881,808 bytes allocated +==24792== +==24792== LEAK SUMMARY: +==24792== definitely lost: 0 bytes in 0 blocks +==24792== indirectly lost: 0 bytes in 0 blocks +==24792== possibly lost: 0 bytes in 0 blocks +==24792== still reachable: 24 bytes in 2 blocks +==24792== suppressed: 618,218 bytes in 8,236 blocks +==24792== Reachable blocks (those to which a pointer was found) are not shown. +==24792== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24792== +==24792== For lists of detected and suppressed errors, rerun with: -s +==24792== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestVertexMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVertexMesh_valgrind.txt new file mode 100644 index 000000000..efd57a59a --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVertexMesh_valgrind.txt @@ -0,0 +1,73 @@ +==24772== Memcheck, a memory error detector +==24772== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24772== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24772== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info +==24772== Parent PID: 24057 +==24772== +==24772== +==24772== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24772== Open file descriptor 12: +==24772== at 0x823C07D: pipe (pipe.c:29) +==24772== by 0x100CC07D: ??? +==24772== by 0xBA134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24772== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24772== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24772== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24772== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24772== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24772== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24772== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24772== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24772== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24772== +==24772== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24772== at 0x8240A1C: __open_nocancel (open64_nocancel.c:39) +==24772== by 0x81C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24772== by 0x659D822: ??? +==24772== by 0x659D96F: ??? +==24772== by 0xBAB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24772== by 0xBAB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24772== by 0xBA6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24772== by 0xBA132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24772== by 0x7A5D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x79F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24772== by 0x66EDD38: PetscInitialize (pinit.c:924) +==24772== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24772== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24772== by 0x14375F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24772== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24772== by 0x1413AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24772== by 0x14124C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24772== by 0x1418E3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24772== by 0x13BF25: main (TestVertexMesh.cpp:19) +==24772== +==24772== Open file descriptor 158: +==24772== +==24772== +==24772== Open file descriptor 155: +==24772== +==24772== +==24772== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt +==24772== +==24772== +==24772== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24772== +==24772== +==24772== +==24772== HEAP SUMMARY: +==24772== in use at exit: 620,794 bytes in 8,239 blocks +==24772== total heap usage: 97,172 allocs, 88,933 frees, 1,348,103,863 bytes allocated +==24772== +==24772== LEAK SUMMARY: +==24772== definitely lost: 0 bytes in 0 blocks +==24772== indirectly lost: 0 bytes in 0 blocks +==24772== possibly lost: 0 bytes in 0 blocks +==24772== still reachable: 2,576 bytes in 3 blocks +==24772== suppressed: 618,218 bytes in 8,236 blocks +==24772== Reachable blocks (those to which a pointer was found) are not shown. +==24772== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24772== +==24772== For lists of detected and suppressed errors, rerun with: -s +==24772== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestVisualizingWithParaviewTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVisualizingWithParaviewTutorial_valgrind.txt new file mode 100644 index 000000000..bd00b051f --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVisualizingWithParaviewTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==40367== Memcheck, a memory error detector +==40367== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40367== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40367== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info +==40367== Parent PID: 24057 +==40367== +==40367== +==40367== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40367== Open file descriptor 12: +==40367== at 0x10CB807D: pipe (pipe.c:29) +==40367== by 0x196B407D: ??? +==40367== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40367== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40367== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40367== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40367== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40367== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40367== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40367== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40367== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40367== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40367== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40367== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40367== +==40367== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40367== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) +==40367== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40367== by 0x104C2822: ??? +==40367== by 0x104C296F: ??? +==40367== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40367== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40367== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40367== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40367== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40367== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40367== by 0xF22DD38: PetscInitialize (pinit.c:924) +==40367== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40367== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40367== by 0x124111: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40367== by 0x11F773: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40367== by 0x121C86: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40367== by 0x121B81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40367== by 0x122195: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40367== by 0x11DF75: main (TestVisualizingWithParaviewTutorial.cpp:18) +==40367== +==40367== Open file descriptor 158: +==40367== +==40367== +==40367== Open file descriptor 155: +==40367== +==40367== +==40367== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVisualizingWithParaviewTutorial_valgrind.txt +==40367== +==40367== +==40367== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40367== +==40367== +==40367== +==40367== HEAP SUMMARY: +==40367== in use at exit: 618,297 bytes in 8,235 blocks +==40367== total heap usage: 11,749,885 allocs, 11,741,650 frees, 2,654,493,312 bytes allocated +==40367== +==40367== LEAK SUMMARY: +==40367== definitely lost: 0 bytes in 0 blocks +==40367== indirectly lost: 0 bytes in 0 blocks +==40367== possibly lost: 0 bytes in 0 blocks +==40367== still reachable: 56 bytes in 3 blocks +==40367== suppressed: 618,241 bytes in 8,232 blocks +==40367== Reachable blocks (those to which a pointer was found) are not shown. +==40367== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40367== +==40367== For lists of detected and suppressed errors, rerun with: -s +==40367== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt new file mode 100644 index 000000000..94be3347d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt @@ -0,0 +1,73 @@ +==43955== Memcheck, a memory error detector +==43955== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==43955== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==43955== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestVoltageInterpolaterOntoMechanicsMesh -malloc_debug -malloc_dump -memory_info +==43955== Parent PID: 24057 +==43955== +==43955== +==43955== FILE DESCRIPTORS: 9 open (3 std) at exit. +==43955== Open file descriptor 12: +==43955== at 0xB90A07D: pipe (pipe.c:29) +==43955== by 0x1432F07D: ??? +==43955== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43955== by 0xBC85418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0xBC1ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0x9F9CD38: PetscInitialize (pinit.c:924) +==43955== by 0x9E731D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43955== by 0x9E73227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43955== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43955== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43955== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43955== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43955== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43955== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43955== +==43955== Open file descriptor 8: /dev/shm/open_mpi.0000 +==43955== at 0xB90EA1C: __open_nocancel (open64_nocancel.c:39) +==43955== by 0xB892BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==43955== by 0xB231822: ??? +==43955== by 0xB23196F: ??? +==43955== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43955== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43955== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==43955== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==43955== by 0xBC85418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0xBC1ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==43955== by 0x9F9CD38: PetscInitialize (pinit.c:924) +==43955== by 0x9E731D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==43955== by 0x9E73227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==43955== by 0x11D9D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==43955== by 0x119393: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==43955== by 0x11B94C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==43955== by 0x11B847: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==43955== by 0x11BE5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==43955== by 0x117B95: main (TestVoltageInterpolaterOntoMechanicsMesh.cpp:18) +==43955== +==43955== Open file descriptor 158: +==43955== +==43955== +==43955== Open file descriptor 155: +==43955== +==43955== +==43955== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoltageInterpolaterOntoMechanicsMesh_valgrind.txt +==43955== +==43955== +==43955== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==43955== +==43955== +==43955== +==43955== HEAP SUMMARY: +==43955== in use at exit: 618,834 bytes in 8,248 blocks +==43955== total heap usage: 544,547 allocs, 536,299 frees, 1,522,648,334 bytes allocated +==43955== +==43955== LEAK SUMMARY: +==43955== definitely lost: 0 bytes in 0 blocks +==43955== indirectly lost: 0 bytes in 0 blocks +==43955== possibly lost: 0 bytes in 0 blocks +==43955== still reachable: 24 bytes in 2 blocks +==43955== suppressed: 618,810 bytes in 8,246 blocks +==43955== Reachable blocks (those to which a pointer was found) are not shown. +==43955== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==43955== +==43955== For lists of detected and suppressed errors, rerun with: -s +==43955== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 38) diff --git a/log-files/2025-02-12_21-17-58/TestVolumeTrackingModifier_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVolumeTrackingModifier_valgrind.txt new file mode 100644 index 000000000..f4e0d0db4 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVolumeTrackingModifier_valgrind.txt @@ -0,0 +1,73 @@ +==39783== Memcheck, a memory error detector +==39783== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==39783== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==39783== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info +==39783== Parent PID: 24057 +==39783== +==39783== +==39783== FILE DESCRIPTORS: 9 open (3 std) at exit. +==39783== Open file descriptor 12: +==39783== at 0xF84307D: pipe (pipe.c:29) +==39783== by 0x196B407D: ??? +==39783== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39783== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39783== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39783== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39783== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39783== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39783== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39783== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39783== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39783== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39783== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39783== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39783== +==39783== Open file descriptor 8: /dev/shm/open_mpi.0000 +==39783== at 0xF847A1C: __open_nocancel (open64_nocancel.c:39) +==39783== by 0xF7CBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==39783== by 0xF144822: ??? +==39783== by 0xF14496F: ??? +==39783== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39783== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39783== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==39783== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==39783== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39783== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==39783== by 0x1012FD38: PetscInitialize (pinit.c:924) +==39783== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==39783== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==39783== by 0x20235E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==39783== by 0x1FA77F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==39783== by 0x1FDF12: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==39783== by 0x1FDE0D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==39783== by 0x1FE421: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==39783== by 0x1F8F75: main (TestVolumeTrackingModifier.cpp:18) +==39783== +==39783== Open file descriptor 158: +==39783== +==39783== +==39783== Open file descriptor 155: +==39783== +==39783== +==39783== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVolumeTrackingModifier_valgrind.txt +==39783== +==39783== +==39783== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==39783== +==39783== +==39783== +==39783== HEAP SUMMARY: +==39783== in use at exit: 618,313 bytes in 8,236 blocks +==39783== total heap usage: 11,559,356 allocs, 11,551,120 frees, 3,065,466,052 bytes allocated +==39783== +==39783== LEAK SUMMARY: +==39783== definitely lost: 0 bytes in 0 blocks +==39783== indirectly lost: 0 bytes in 0 blocks +==39783== possibly lost: 0 bytes in 0 blocks +==39783== still reachable: 72 bytes in 4 blocks +==39783== suppressed: 618,241 bytes in 8,232 blocks +==39783== Reachable blocks (those to which a pointer was found) are not shown. +==39783== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==39783== +==39783== For lists of detected and suppressed errors, rerun with: -s +==39783== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33) diff --git a/log-files/2025-02-12_21-17-58/TestVoronoiVertexMeshGenerator_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVoronoiVertexMeshGenerator_valgrind.txt new file mode 100644 index 000000000..7d5a9a3e8 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVoronoiVertexMeshGenerator_valgrind.txt @@ -0,0 +1,73 @@ +==24805== Memcheck, a memory error detector +==24805== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24805== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24805== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVoronoiVertexMeshGenerator -malloc_debug -malloc_dump -memory_info +==24805== Parent PID: 24057 +==24805== +==24805== +==24805== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24805== Open file descriptor 12: +==24805== at 0x6D4307D: pipe (pipe.c:29) +==24805== by 0x100CC07D: ??? +==24805== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24805== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x701FD38: PetscInitialize (pinit.c:924) +==24805== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24805== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24805== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24805== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24805== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24805== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24805== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24805== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24805== +==24805== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24805== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24805== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24805== by 0x659D822: ??? +==24805== by 0x659D96F: ??? +==24805== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24805== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24805== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24805== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24805== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24805== by 0x701FD38: PetscInitialize (pinit.c:924) +==24805== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24805== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24805== by 0x1216D6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24805== by 0x11C6AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24805== by 0x11F25A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24805== by 0x11F0FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24805== by 0x11F791: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24805== by 0x11AAD5: main (TestVoronoiVertexMeshGenerator.cpp:19) +==24805== +==24805== Open file descriptor 158: +==24805== +==24805== +==24805== Open file descriptor 155: +==24805== +==24805== +==24805== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVoronoiVertexMeshGenerator_valgrind.txt +==24805== +==24805== +==24805== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24805== +==24805== +==24805== +==24805== HEAP SUMMARY: +==24805== in use at exit: 620,721 bytes in 8,235 blocks +==24805== total heap usage: 446,961 allocs, 438,726 frees, 1,381,745,817 bytes allocated +==24805== +==24805== LEAK SUMMARY: +==24805== definitely lost: 0 bytes in 0 blocks +==24805== indirectly lost: 0 bytes in 0 blocks +==24805== possibly lost: 0 bytes in 0 blocks +==24805== still reachable: 2,576 bytes in 3 blocks +==24805== suppressed: 618,145 bytes in 8,232 blocks +==24805== Reachable blocks (those to which a pointer was found) are not shown. +==24805== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24805== +==24805== For lists of detected and suppressed errors, rerun with: -s +==24805== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32) diff --git a/log-files/2025-02-12_21-17-58/TestVtkMeshReader_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVtkMeshReader_valgrind.txt new file mode 100644 index 000000000..bdcfbf42e --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVtkMeshReader_valgrind.txt @@ -0,0 +1,73 @@ +==24644== Memcheck, a memory error detector +==24644== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24644== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24644== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVtkMeshReader -malloc_debug -malloc_dump -memory_info +==24644== Parent PID: 24057 +==24644== +==24644== +==24644== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24644== Open file descriptor 12: +==24644== at 0x6D4307D: pipe (pipe.c:29) +==24644== by 0x100CC07D: ??? +==24644== by 0xBA604CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24644== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x701FD38: PetscInitialize (pinit.c:924) +==24644== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24644== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24644== by 0x12F262: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24644== by 0x12A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24644== by 0x12D1AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24644== by 0x12D04E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24644== by 0x12D6E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24644== by 0x128795: main (TestVtkMeshReader.cpp:19) +==24644== +==24644== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24644== at 0x6D47A1C: __open_nocancel (open64_nocancel.c:39) +==24644== by 0x6CCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24644== by 0x659D822: ??? +==24644== by 0x659D96F: ??? +==24644== by 0xBB056DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24644== by 0xBB05938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24644== by 0xBABB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24644== by 0xBA602DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24644== by 0x838F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x8328D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24644== by 0x701FD38: PetscInitialize (pinit.c:924) +==24644== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24644== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24644== by 0x12F262: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24644== by 0x12A36D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24644== by 0x12D1AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24644== by 0x12D04E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24644== by 0x12D6E5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24644== by 0x128795: main (TestVtkMeshReader.cpp:19) +==24644== +==24644== Open file descriptor 158: +==24644== +==24644== +==24644== Open file descriptor 155: +==24644== +==24644== +==24644== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkMeshReader_valgrind.txt +==24644== +==24644== +==24644== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24644== +==24644== +==24644== +==24644== HEAP SUMMARY: +==24644== in use at exit: 618,242 bytes in 8,238 blocks +==24644== total heap usage: 163,469 allocs, 155,231 frees, 1,348,927,906 bytes allocated +==24644== +==24644== LEAK SUMMARY: +==24644== definitely lost: 0 bytes in 0 blocks +==24644== indirectly lost: 0 bytes in 0 blocks +==24644== possibly lost: 0 bytes in 0 blocks +==24644== still reachable: 24 bytes in 2 blocks +==24644== suppressed: 618,218 bytes in 8,236 blocks +==24644== Reachable blocks (those to which a pointer was found) are not shown. +==24644== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24644== +==24644== For lists of detected and suppressed errors, rerun with: -s +==24644== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt b/log-files/2025-02-12_21-17-58/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt new file mode 100644 index 000000000..8afcaacf2 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt @@ -0,0 +1,73 @@ +==25412== Memcheck, a memory error detector +==25412== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25412== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25412== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestVtkNonlinearElasticitySolutionWriter -malloc_debug -malloc_dump -memory_info +==25412== Parent PID: 24057 +==25412== +==25412== +==25412== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25412== Open file descriptor 12: +==25412== at 0x82D207D: pipe (pipe.c:29) +==25412== by 0x106DF07D: ??? +==25412== by 0xBFF44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25412== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25412== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25412== by 0x6897D38: PetscInitialize (pinit.c:924) +==25412== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25412== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25412== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25412== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25412== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25412== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25412== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25412== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25412== +==25412== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25412== at 0x82D6A1C: __open_nocancel (open64_nocancel.c:39) +==25412== by 0x825ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25412== by 0x7B2C822: ??? +==25412== by 0x7B2C96F: ??? +==25412== by 0xC0996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25412== by 0xC099938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25412== by 0xC04F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25412== by 0xBFF42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25412== by 0x88AC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25412== by 0x8845D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25412== by 0x6897D38: PetscInitialize (pinit.c:924) +==25412== by 0x676E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25412== by 0x676E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25412== by 0x132248: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25412== by 0x12D1ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25412== by 0x1302BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25412== by 0x13015C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25412== by 0x1307F3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25412== by 0x12B615: main (TestVtkNonlinearElasticitySolutionWriter.cpp:19) +==25412== +==25412== Open file descriptor 158: +==25412== +==25412== +==25412== Open file descriptor 155: +==25412== +==25412== +==25412== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVtkNonlinearElasticitySolutionWriter_valgrind.txt +==25412== +==25412== +==25412== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25412== +==25412== +==25412== +==25412== HEAP SUMMARY: +==25412== in use at exit: 618,290 bytes in 8,238 blocks +==25412== total heap usage: 419,049 allocs, 410,811 frees, 1,414,784,116 bytes allocated +==25412== +==25412== LEAK SUMMARY: +==25412== definitely lost: 0 bytes in 0 blocks +==25412== indirectly lost: 0 bytes in 0 blocks +==25412== possibly lost: 0 bytes in 0 blocks +==25412== still reachable: 24 bytes in 2 blocks +==25412== suppressed: 618,266 bytes in 8,236 blocks +==25412== Reachable blocks (those to which a pointer was found) are not shown. +==25412== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25412== +==25412== For lists of detected and suppressed errors, rerun with: -s +==25412== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestWarnings_valgrind.txt b/log-files/2025-02-12_21-17-58/TestWarnings_valgrind.txt new file mode 100644 index 000000000..13aec64ab --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestWarnings_valgrind.txt @@ -0,0 +1,73 @@ +==24304== Memcheck, a memory error detector +==24304== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24304== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24304== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info +==24304== Parent PID: 24057 +==24304== +==24304== +==24304== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24304== Open file descriptor 12: +==24304== at 0x616907D: pipe (pipe.c:29) +==24304== by 0xAEA507D: ??? +==24304== by 0x89BC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24304== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24304== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24304== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24304== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24304== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24304== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24304== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24304== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24304== by 0x10EAF5: main (TestWarnings.cpp:19) +==24304== +==24304== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24304== at 0x616DA1C: __open_nocancel (open64_nocancel.c:39) +==24304== by 0x60F1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24304== by 0x5CB8822: ??? +==24304== by 0x5CB896F: ??? +==24304== by 0x8A616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8A61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x8A17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24304== by 0x89BC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24304== by 0x5DB6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x5D4FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24304== by 0x4A23D38: PetscInitialize (pinit.c:924) +==24304== by 0x48FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24304== by 0x48FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24304== by 0x114FFB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==24304== by 0x1106CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24304== by 0x11308E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24304== by 0x112F2E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24304== by 0x1135C5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24304== by 0x10EAF5: main (TestWarnings.cpp:19) +==24304== +==24304== Open file descriptor 158: +==24304== +==24304== +==24304== Open file descriptor 155: +==24304== +==24304== +==24304== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWarnings_valgrind.txt +==24304== +==24304== +==24304== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24304== +==24304== +==24304== +==24304== HEAP SUMMARY: +==24304== in use at exit: 617,874 bytes in 8,238 blocks +==24304== total heap usage: 45,667 allocs, 37,429 frees, 1,338,292,756 bytes allocated +==24304== +==24304== LEAK SUMMARY: +==24304== definitely lost: 0 bytes in 0 blocks +==24304== indirectly lost: 0 bytes in 0 blocks +==24304== possibly lost: 0 bytes in 0 blocks +==24304== still reachable: 24 bytes in 2 blocks +==24304== suppressed: 617,850 bytes in 8,236 blocks +==24304== Reachable blocks (those to which a pointer was found) are not shown. +==24304== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24304== +==24304== For lists of detected and suppressed errors, rerun with: -s +==24304== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34) diff --git a/log-files/2025-02-12_21-17-58/TestWntCellCycleOdeSystem_valgrind.txt b/log-files/2025-02-12_21-17-58/TestWntCellCycleOdeSystem_valgrind.txt new file mode 100644 index 000000000..5ddfdf31d --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestWntCellCycleOdeSystem_valgrind.txt @@ -0,0 +1,73 @@ +==40611== Memcheck, a memory error detector +==40611== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40611== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40611== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info +==40611== Parent PID: 24057 +==40611== +==40611== +==40611== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40611== Open file descriptor 12: +==40611== at 0x1085407D: pipe (pipe.c:29) +==40611== by 0x1B37507D: ??? +==40611== by 0x155194CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40611== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0xF131D38: PetscInitialize (pinit.c:924) +==40611== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40611== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40611== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40611== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40611== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40611== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40611== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40611== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40611== +==40611== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40611== at 0x10858A1C: __open_nocancel (open64_nocancel.c:39) +==40611== by 0x107DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40611== by 0xEFE3822: ??? +==40611== by 0xEFE396F: ??? +==40611== by 0x155BE6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40611== by 0x155BE938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40611== by 0x15574922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40611== by 0x155192DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40611== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40611== by 0xF131D38: PetscInitialize (pinit.c:924) +==40611== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40611== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40611== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40611== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40611== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40611== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40611== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40611== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) +==40611== +==40611== Open file descriptor 158: +==40611== +==40611== +==40611== Open file descriptor 155: +==40611== +==40611== +==40611== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt +==40611== +==40611== +==40611== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40611== +==40611== +==40611== +==40611== HEAP SUMMARY: +==40611== in use at exit: 618,354 bytes in 8,238 blocks +==40611== total heap usage: 185,584 allocs, 177,346 frees, 1,419,925,458 bytes allocated +==40611== +==40611== LEAK SUMMARY: +==40611== definitely lost: 0 bytes in 0 blocks +==40611== indirectly lost: 0 bytes in 0 blocks +==40611== possibly lost: 0 bytes in 0 blocks +==40611== still reachable: 24 bytes in 2 blocks +==40611== suppressed: 618,330 bytes in 8,236 blocks +==40611== Reachable blocks (those to which a pointer was found) are not shown. +==40611== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40611== +==40611== For lists of detected and suppressed errors, rerun with: -s +==40611== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestWntConcentration_valgrind.txt b/log-files/2025-02-12_21-17-58/TestWntConcentration_valgrind.txt new file mode 100644 index 000000000..ab57c8512 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestWntConcentration_valgrind.txt @@ -0,0 +1,73 @@ +==40527== Memcheck, a memory error detector +==40527== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==40527== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==40527== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info +==40527== Parent PID: 24057 +==40527== +==40527== +==40527== FILE DESCRIPTORS: 9 open (3 std) at exit. +==40527== Open file descriptor 12: +==40527== at 0x126A107D: pipe (pipe.c:29) +==40527== by 0x1B37607D: ??? +==40527== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40527== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40527== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40527== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40527== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40527== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40527== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40527== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40527== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40527== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40527== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40527== by 0x13D825: main (TestWntConcentration.cpp:19) +==40527== +==40527== Open file descriptor 8: /dev/shm/open_mpi.0000 +==40527== at 0x126A5A1C: __open_nocancel (open64_nocancel.c:39) +==40527== by 0x12629BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==40527== by 0x10A04822: ??? +==40527== by 0x10A0496F: ??? +==40527== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40527== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40527== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==40527== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==40527== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40527== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==40527== by 0x10B52D38: PetscInitialize (pinit.c:924) +==40527== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==40527== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==40527== by 0x1449B9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) +==40527== by 0x13F409: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==40527== by 0x14221A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==40527== by 0x1420BA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==40527== by 0x142751: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==40527== by 0x13D825: main (TestWntConcentration.cpp:19) +==40527== +==40527== Open file descriptor 158: +==40527== +==40527== +==40527== Open file descriptor 155: +==40527== +==40527== +==40527== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntConcentration_valgrind.txt +==40527== +==40527== +==40527== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==40527== +==40527== +==40527== +==40527== HEAP SUMMARY: +==40527== in use at exit: 618,466 bytes in 8,240 blocks +==40527== total heap usage: 56,677 allocs, 48,437 frees, 1,340,183,804 bytes allocated +==40527== +==40527== LEAK SUMMARY: +==40527== definitely lost: 0 bytes in 0 blocks +==40527== indirectly lost: 0 bytes in 0 blocks +==40527== possibly lost: 0 bytes in 0 blocks +==40527== still reachable: 136 bytes in 4 blocks +==40527== suppressed: 618,330 bytes in 8,236 blocks +==40527== Reachable blocks (those to which a pointer was found) are not shown. +==40527== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==40527== +==40527== For lists of detected and suppressed errors, rerun with: -s +==40527== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37) diff --git a/log-files/2025-02-12_21-17-58/TestWritingPdeSolversTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestWritingPdeSolversTutorial_valgrind.txt new file mode 100644 index 000000000..2eda47e75 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestWritingPdeSolversTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25202== Memcheck, a memory error detector +==25202== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25202== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25202== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTutorial -malloc_debug -malloc_dump -memory_info +==25202== Parent PID: 24057 +==25202== +==25202== +==25202== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25202== Open file descriptor 12: +==25202== at 0x856207D: pipe (pipe.c:29) +==25202== by 0x104DE07D: ??? +==25202== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25202== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25202== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25202== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25202== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25202== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25202== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25202== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25202== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25202== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25202== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25202== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25202== +==25202== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25202== at 0x8566A1C: __open_nocancel (open64_nocancel.c:39) +==25202== by 0x84EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25202== by 0x7DBC822: ??? +==25202== by 0x7DBC96F: ??? +==25202== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25202== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25202== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25202== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25202== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25202== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25202== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25202== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25202== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25202== by 0x14C16C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25202== by 0x147113: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25202== by 0x149DC4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25202== by 0x149CBF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25202== by 0x14A2D3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25202== by 0x145915: main (TestWritingPdeSolversTutorial.cpp:18) +==25202== +==25202== Open file descriptor 158: +==25202== +==25202== +==25202== Open file descriptor 155: +==25202== +==25202== +==25202== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTutorial_valgrind.txt +==25202== +==25202== +==25202== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25202== +==25202== +==25202== +==25202== HEAP SUMMARY: +==25202== in use at exit: 618,681 bytes in 8,244 blocks +==25202== total heap usage: 1,131,261 allocs, 1,123,017 frees, 1,457,328,171 bytes allocated +==25202== +==25202== LEAK SUMMARY: +==25202== definitely lost: 0 bytes in 0 blocks +==25202== indirectly lost: 0 bytes in 0 blocks +==25202== possibly lost: 0 bytes in 0 blocks +==25202== still reachable: 24 bytes in 2 blocks +==25202== suppressed: 618,657 bytes in 8,242 blocks +==25202== Reachable blocks (those to which a pointer was found) are not shown. +==25202== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25202== +==25202== For lists of detected and suppressed errors, rerun with: -s +==25202== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 31) diff --git a/log-files/2025-02-12_21-17-58/TestWritingPdeSolversTwoTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestWritingPdeSolversTwoTutorial_valgrind.txt new file mode 100644 index 000000000..9d5924de0 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestWritingPdeSolversTwoTutorial_valgrind.txt @@ -0,0 +1,73 @@ +==25217== Memcheck, a memory error detector +==25217== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==25217== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==25217== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestWritingPdeSolversTwoTutorial -malloc_debug -malloc_dump -memory_info +==25217== Parent PID: 24057 +==25217== +==25217== +==25217== FILE DESCRIPTORS: 9 open (3 std) at exit. +==25217== Open file descriptor 12: +==25217== at 0x856207D: pipe (pipe.c:29) +==25217== by 0x104DE07D: ??? +==25217== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25217== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25217== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25217== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25217== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25217== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25217== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25217== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25217== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25217== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25217== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25217== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25217== +==25217== Open file descriptor 8: /dev/shm/open_mpi.0000 +==25217== at 0x8566A1C: __open_nocancel (open64_nocancel.c:39) +==25217== by 0x84EABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==25217== by 0x7DBC822: ??? +==25217== by 0x7DBC96F: ??? +==25217== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25217== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25217== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==25217== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==25217== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25217== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==25217== by 0x6B27D38: PetscInitialize (pinit.c:924) +==25217== by 0x69FE1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==25217== by 0x69FE227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==25217== by 0x13DDFA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==25217== by 0x138DF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==25217== by 0x13B99A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==25217== by 0x13B895: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==25217== by 0x13BEA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==25217== by 0x1375F5: main (TestWritingPdeSolversTwoTutorial.cpp:18) +==25217== +==25217== Open file descriptor 158: +==25217== +==25217== +==25217== Open file descriptor 155: +==25217== +==25217== +==25217== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingPdeSolversTwoTutorial_valgrind.txt +==25217== +==25217== +==25217== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==25217== +==25217== +==25217== +==25217== HEAP SUMMARY: +==25217== in use at exit: 618,754 bytes in 8,248 blocks +==25217== total heap usage: 128,429 allocs, 120,181 frees, 1,367,378,998 bytes allocated +==25217== +==25217== LEAK SUMMARY: +==25217== definitely lost: 0 bytes in 0 blocks +==25217== indirectly lost: 0 bytes in 0 blocks +==25217== possibly lost: 0 bytes in 0 blocks +==25217== still reachable: 24 bytes in 2 blocks +==25217== suppressed: 618,730 bytes in 8,246 blocks +==25217== Reachable blocks (those to which a pointer was found) are not shown. +==25217== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==25217== +==25217== For lists of detected and suppressed errors, rerun with: -s +==25217== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 35) diff --git a/log-files/2025-02-12_21-17-58/TestWritingTestsTutorial_valgrind.txt b/log-files/2025-02-12_21-17-58/TestWritingTestsTutorial_valgrind.txt new file mode 100644 index 000000000..d5acf57f1 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestWritingTestsTutorial_valgrind.txt @@ -0,0 +1,36 @@ +==24305== Memcheck, a memory error detector +==24305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24305== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWritingTestsTutorial -malloc_debug -malloc_dump -memory_info +==24305== Parent PID: 24057 +==24305== +==24305== +==24305== FILE DESCRIPTORS: 7 open (3 std) at exit. +==24305== Open file descriptor 158: +==24305== +==24305== +==24305== Open file descriptor 155: +==24305== +==24305== +==24305== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWritingTestsTutorial_valgrind.txt +==24305== +==24305== +==24305== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24305== +==24305== +==24305== +==24305== HEAP SUMMARY: +==24305== in use at exit: 24 bytes in 2 blocks +==24305== total heap usage: 3,071 allocs, 3,069 frees, 350,889 bytes allocated +==24305== +==24305== LEAK SUMMARY: +==24305== definitely lost: 0 bytes in 0 blocks +==24305== indirectly lost: 0 bytes in 0 blocks +==24305== possibly lost: 0 bytes in 0 blocks +==24305== still reachable: 24 bytes in 2 blocks +==24305== suppressed: 0 bytes in 0 blocks +==24305== Reachable blocks (those to which a pointer was found) are not shown. +==24305== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24305== +==24305== For lists of detected and suppressed errors, rerun with: -s +==24305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 0 from 0) diff --git a/log-files/2025-02-12_21-17-58/TestXmlMeshWriters_valgrind.txt b/log-files/2025-02-12_21-17-58/TestXmlMeshWriters_valgrind.txt new file mode 100644 index 000000000..d5f53d5e9 --- /dev/null +++ b/log-files/2025-02-12_21-17-58/TestXmlMeshWriters_valgrind.txt @@ -0,0 +1,73 @@ +==24824== Memcheck, a memory error detector +==24824== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. +==24824== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info +==24824== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestXmlMeshWriters -malloc_debug -malloc_dump -memory_info +==24824== Parent PID: 24057 +==24824== +==24824== +==24824== FILE DESCRIPTORS: 9 open (3 std) at exit. +==24824== Open file descriptor 12: +==24824== at 0x709707D: pipe (pipe.c:29) +==24824== by 0x100CD07D: ??? +==24824== by 0xBCF34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24824== by 0x86E3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x867CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x7373D38: PetscInitialize (pinit.c:924) +==24824== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24824== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24824== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24824== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24824== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24824== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24824== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24824== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24824== +==24824== Open file descriptor 8: /dev/shm/open_mpi.0000 +==24824== at 0x709BA1C: __open_nocancel (open64_nocancel.c:39) +==24824== by 0x701FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) +==24824== by 0x659D822: ??? +==24824== by 0x659D96F: ??? +==24824== by 0xBD986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24824== by 0xBD98938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24824== by 0xBD4E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) +==24824== by 0xBCF32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) +==24824== by 0x86E3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x867CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) +==24824== by 0x7373D38: PetscInitialize (pinit.c:924) +==24824== by 0x655D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) +==24824== by 0x655D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) +==24824== by 0x141D14: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) +==24824== by 0x13CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) +==24824== by 0x13FA20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) +==24824== by 0x13F8C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) +==24824== by 0x13FF57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) +==24824== by 0x13B075: main (TestXmlMeshWriters.cpp:19) +==24824== +==24824== Open file descriptor 158: +==24824== +==24824== +==24824== Open file descriptor 155: +==24824== +==24824== +==24824== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestXmlMeshWriters_valgrind.txt +==24824== +==24824== +==24824== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp +==24824== +==24824== +==24824== +==24824== HEAP SUMMARY: +==24824== in use at exit: 618,242 bytes in 8,238 blocks +==24824== total heap usage: 457,864 allocs, 449,626 frees, 1,403,084,217 bytes allocated +==24824== +==24824== LEAK SUMMARY: +==24824== definitely lost: 0 bytes in 0 blocks +==24824== indirectly lost: 0 bytes in 0 blocks +==24824== possibly lost: 0 bytes in 0 blocks +==24824== still reachable: 24 bytes in 2 blocks +==24824== suppressed: 618,218 bytes in 8,236 blocks +==24824== Reachable blocks (those to which a pointer was found) are not shown. +==24824== To see them, rerun with: --leak-check=full --show-leak-kinds=all +==24824== +==24824== For lists of detected and suppressed errors, rerun with: -s +==24824== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 67 from 35) diff --git a/log-files/2025-02-12_21-17-58/index.html b/log-files/2025-02-12_21-17-58/index.html new file mode 100644 index 000000000..e2eee5bed --- /dev/null +++ b/log-files/2025-02-12_21-17-58/index.html @@ -0,0 +1,425 @@ + + + + + + Chaste valgrind memtest output + + +

Memtest output for commit aee988e63fdeb40b7d92437e4c0438a66095e1e9 on branch 377-fix-petsc-317-citation

+
+

Summary of 398 tests:

+

green: 398

+

orange: 0

+

red: 0

+
+

Test1D3DLinearEllipticSolver: No leaks found (test output)

+

Test1dMonodomainShannonCvodeBenchmarks: No leaks found (test output)

+

Test2dVertexBasedSimulationWithSrnModels: No leaks found (test output)

+

TestAbstractAnalyticJacobian: No leaks found (test output)

+

TestAbstractContinuumMechanicsAssembler: No leaks found (test output)

+

TestAbstractContractionCellFactory: No leaks found (test output)

+

TestAbstractCvodeSystem: No leaks found (test output)

+

TestAbstractFeCableIntegralAssembler: No leaks found (test output)

+

TestAbstractFeSurfaceIntegralAssembler: No leaks found (test output)

+

TestAbstractFeVolumeIntegralAssembler: No leaks found (test output)

+

TestAbstractFunctionalCalculator: No leaks found (test output)

+

TestAbstractIvpOdeSolver: No leaks found (test output)

+

TestAbstractOdeSystem: No leaks found (test output)

+

TestAbstractPurkinjeCellFactory: No leaks found (test output)

+

TestAcinarUnitModels: No leaks found (test output)

+

TestAirwayBranch: No leaks found (test output)

+

TestAirwayGeneration: No leaks found (test output)

+

TestAirwayGenerator: No leaks found (test output)

+

TestAirwayPropertiesCalculator: No leaks found (test output)

+

TestAirwayRemesher: No leaks found (test output)

+

TestAirwayTreeWalker: No leaks found (test output)

+

TestAirwayWallModels: No leaks found (test output)

+

TestAlarcon2004OxygenBasedCellCycleOdeSystem: No leaks found (test output)

+

TestArchiveCell: No leaks found (test output)

+

TestArchiveFormat: No leaks found (test output)

+

TestArchiving: No leaks found (test output)

+

TestArchivingExtendedBidomain: No leaks found (test output)

+

TestArchivingHelperClasses: No leaks found (test output)

+

TestBackwardEulerIvpOdeSolver: No leaks found (test output)

+

TestBenchmarkPreconditionersForMeshIndependence: No leaks found (test output)

+

TestBidomainDistributedMesh: No leaks found (test output)

+

TestBidomainProblem: No leaks found (test output)

+

TestBidomainTissue: No leaks found (test output)

+

TestBidomainWithBathProblem: No leaks found (test output)

+

TestBidomainWithSvi: No leaks found (test output)

+

TestBoundaryConditionsContainer: No leaks found (test output)

+

TestBuskeForces: No leaks found (test output)

+

TestCaBasedCellPopulation: No leaks found (test output)

+

TestCaBasedDivisionRules: No leaks found (test output)

+

TestCaUpdateRules: No leaks found (test output)

+

TestCableTestProblem: No leaks found (test output)

+

TestCardiacElectroMechanicsFurtherFunctionality: No leaks found (test output)

+

TestCardiacElectroMechanicsProblem: No leaks found (test output)

+

TestCardiacSimulation: No leaks found (test output)

+

TestCardiacSimulationArchiver: No leaks found (test output)

+

TestCell: No leaks found (test output)

+

TestCellBasedCellProperties: No leaks found (test output)

+

TestCellBasedEllipticPdeSolver: No leaks found (test output)

+

TestCellBasedEllipticPdes: No leaks found (test output)

+

TestCellBasedEventHandler: No leaks found (test output)

+

TestCellBasedParabolicPdes: No leaks found (test output)

+

TestCellBetaCateninWriter: No leaks found (test output)

+

TestCellCycleModelOdeSolver: No leaks found (test output)

+

TestCellDataMaps: No leaks found (test output)

+

TestCellForCrypt: No leaks found (test output)

+

TestCellKillers: No leaks found (test output)

+

TestCellMutationStates: No leaks found (test output)

+

TestCellPopulationBoundaryConditions: No leaks found (test output)

+

TestCellPopulationCountWriters: No leaks found (test output)

+

TestCellPopulationEventWriters: No leaks found (test output)

+

TestCellPopulationWriters: No leaks found (test output)

+

TestCellProliferativeTypes: No leaks found (test output)

+

TestCellProperties: No leaks found (test output)

+

TestCellPropertyCollection: No leaks found (test output)

+

TestCellPropertyRegistry: No leaks found (test output)

+

TestCellSrn: No leaks found (test output)

+

TestCellWriters: No leaks found (test output)

+

TestCellsGenerator: No leaks found (test output)

+

TestCellwiseDataGradient: No leaks found (test output)

+

TestCentreBasedDivisionRules: No leaks found (test output)

+

TestChasteBuildInfo: No leaks found (test output)

+

TestChastePoint: No leaks found (test output)

+

TestChasteRegions: No leaks found (test output)

+

TestChebyshevIteration: No leaks found (test output)

+

TestCheckpointing: No leaks found (test output)

+

TestCitations: No leaks found (test output)

+

TestCodegen: No leaks found (test output)

+

TestCodegenPresent: No leaks found (test output)

+

TestColumnDataReaderWriter: No leaks found (test output)

+

TestCombinedOdeSystem: No leaks found (test output)

+

TestCommandLineArguments: No leaks found (test output)

+

TestCommandLineArgumentsTutorial: No leaks found (test output)

+

TestCompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestConductivityTensors: No leaks found (test output)

+

TestConstBoundaryCondition: No leaks found (test output)

+

TestContinuumMechanicsNeumannBcsAssembler: No leaks found (test output)

+

TestContractionModels: No leaks found (test output)

+

TestConvergenceTester: No leaks found (test output)

+

TestCoupledCableTestProblem: No leaks found (test output)

+

TestCreatingAndUsingANewCellBasedSimulationModifierTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellCycleModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellKillerTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellMutationStateTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPopulationBoundaryConditionTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewCellPropertyTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewForceTutorial: No leaks found (test output)

+

TestCreatingAndUsingANewSrnModelTutorial: No leaks found (test output)

+

TestCreatingAndUsingNewCellBasedWritersTutorial: No leaks found (test output)

+

TestCryptCellsGenerator: No leaks found (test output)

+

TestCryptDivisionRules: No leaks found (test output)

+

TestCryptProjectionForce: No leaks found (test output)

+

TestCryptProjectionStatistics: No leaks found (test output)

+

TestCryptSimulation1d: No leaks found (test output)

+

TestCryptSimulation2dWithMeshBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulation2dWithVertexBasedCellPopulation: No leaks found (test output)

+

TestCryptSimulationBoundaryCondition: No leaks found (test output)

+

TestCryptStatistics: No leaks found (test output)

+

TestCvodeAdaptor: No leaks found (test output)

+

TestCvodeCells: No leaks found (test output)

+

TestCvodeCellsWithDataClamp: No leaks found (test output)

+

TestCvodeWithJacobian: No leaks found (test output)

+

TestCwd: No leaks found (test output)

+

TestCylindrical2dMesh: No leaks found (test output)

+

TestCylindrical2dNodesOnlyMesh: No leaks found (test output)

+

TestCylindrical2dVertexMesh: No leaks found (test output)

+

TestCylindricalHoneycombMeshGenerator: No leaks found (test output)

+

TestCylindricalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestDebug: No leaks found (test output)

+

TestDeltaNotchModifier: No leaks found (test output)

+

TestDeltaNotchOdeSystem: No leaks found (test output)

+

TestDiscreteSystemForceCalculator: No leaks found (test output)

+

TestDistanceMapCalculator: No leaks found (test output)

+

TestDistributedBoxCollection: No leaks found (test output)

+

TestDistributedQuadraticMesh: No leaks found (test output)

+

TestDistributedTetrahedralMesh: No leaks found (test output)

+

TestDistributedVector: No leaks found (test output)

+

TestDivisionBiasTrackingModifier: No leaks found (test output)

+

TestDynamicVentilation: No leaks found (test output)

+

TestDynamicallyLoadedCellModels: No leaks found (test output)

+

TestEdge: No leaks found (test output)

+

TestEdgeInteriorSrn: No leaks found (test output)

+

TestElectroMechanicsExactSolution: No leaks found (test output)

+

TestElectroMechanicsProblemDefinition: No leaks found (test output)

+

TestElectrodes: No leaks found (test output)

+

TestElement: No leaks found (test output)

+

TestElementAttributes: No leaks found (test output)

+

TestEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestException: No leaks found (test output)

+

TestExecutableSupport: No leaks found (test output)

+

TestExplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestExtendedBidomainProblem: No leaks found (test output)

+

TestExtendedBidomainTissue: No leaks found (test output)

+

TestExtendedVsBidomainProblem: No leaks found (test output)

+

TestExtrinsicPullModifier: No leaks found (test output)

+

TestFemlabMeshReader: No leaks found (test output)

+

TestFibreReader: No leaks found (test output)

+

TestFibreReaderAbilityExtendedBidomainProblem: No leaks found (test output)

+

TestFibreWriter: No leaks found (test output)

+

TestFileComparison: No leaks found (test output)

+

TestFileFinder: No leaks found (test output)

+

TestFineCoarseMeshPair: No leaks found (test output)

+

TestFloatingPointDivisionByZero: No leaks found (test output)

+

TestFloatingPointDivisionByZeroPetsc: No leaks found (test output)

+

TestFluidSource: No leaks found (test output)

+

TestForces: No leaks found (test output)

+

TestFourthOrderTensor: No leaks found (test output)

+

TestGIModifiedModels: No leaks found (test output)

+

TestGRL1IvpOdeSolver: No leaks found (test output)

+

TestGRL2IvpOdeSolver: No leaks found (test output)

+

TestGaussianQuadratureRule: No leaks found (test output)

+

TestGeneralizedRushLarsen: No leaks found (test output)

+

TestGenericEventHandler: No leaks found (test output)

+

TestGmshMeshReader: No leaks found (test output)

+

TestGoldbeter1991OdeSystem: No leaks found (test output)

+

TestHdf5Converters: No leaks found (test output)

+

TestHdf5DataReader: No leaks found (test output)

+

TestHdf5DataWriter: No leaks found (test output)

+

TestHdf5ToVisualizerConverters: No leaks found (test output)

+

TestHeartConfig: No leaks found (test output)

+

TestHeartEventHandler: No leaks found (test output)

+

TestHeartFileFinder: No leaks found (test output)

+

TestHeartGeometryInformation: No leaks found (test output)

+

TestHeartRegionCodes: No leaks found (test output)

+

TestHelloWorld: No leaks found (test output)

+

TestHeterogeneousConductivities: No leaks found (test output)

+

TestHeun2IvpOdeSolver: No leaks found (test output)

+

TestHodgkinHuxleySquidAxon1952OriginalOdeSystem: No leaks found (test output)

+

TestHoneycombMeshGenerator: No leaks found (test output)

+

TestHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestImmersedBoundary2dArrays: No leaks found (test output)

+

TestImmersedBoundaryCellPopulation: No leaks found (test output)

+

TestImmersedBoundaryDivisionRules: No leaks found (test output)

+

TestImmersedBoundaryElement: No leaks found (test output)

+

TestImmersedBoundaryFftInterface: No leaks found (test output)

+

TestImmersedBoundaryForces: No leaks found (test output)

+

TestImmersedBoundaryHoneycombMeshGenerator: No leaks found (test output)

+

TestImmersedBoundaryMesh: No leaks found (test output)

+

TestImmersedBoundaryMeshReader: No leaks found (test output)

+

TestImmersedBoundaryMeshWriter: No leaks found (test output)

+

TestImmersedBoundaryPalisadeMeshGenerator: No leaks found (test output)

+

TestImmersedBoundarySimulationModifier: No leaks found (test output)

+

TestImmersedBoundarySvgWriter: No leaks found (test output)

+

TestImpedancePostProcessor: No leaks found (test output)

+

TestImplicitCardiacMechanicsSolver: No leaks found (test output)

+

TestIncompressibleNonlinearElasticitySolver: No leaks found (test output)

+

TestIonicModels: No leaks found (test output)

+

TestIonicModelsWithSacs: No leaks found (test output)

+

TestLinearBasisFunction: No leaks found (test output)

+

TestLinearParabolicPdeSystemForCoupledOdeSystem: No leaks found (test output)

+

TestLinearParabolicPdeSystemWithCoupledOdeSystemSolver: No leaks found (test output)

+

TestLinearSpringWithVariableSpringConstantsForce: No leaks found (test output)

+

TestLinearSystem: No leaks found (test output)

+

TestLobePropertiesCalculator: No leaks found (test output)

+

TestLogFile: No leaks found (test output)

+

TestMajorAirwaysCentreLinesCleaner: No leaks found (test output)

+

TestMaterialLaws: No leaks found (test output)

+

TestMathsCustomFunctions: No leaks found (test output)

+

TestMatrixVentilationProblem: No leaks found (test output)

+

TestMemfemMeshReader: No leaks found (test output)

+

TestMeshBasedCellPopulation: No leaks found (test output)

+

TestMeshBasedCellPopulationWithGhostNodes: No leaks found (test output)

+

TestMeshUtilityFunctions: No leaks found (test output)

+

TestMeshWriters: No leaks found (test output)

+

TestMirams2010WntOdeSystem: No leaks found (test output)

+

TestMixedDimensionMesh: No leaks found (test output)

+

TestMockEulerIvpOdeSolver: No leaks found (test output)

+

TestModernCppFeatures: No leaks found (test output)

+

TestModifiers: No leaks found (test output)

+

TestMonodomainConductionVelocity: No leaks found (test output)

+

TestMonodomainFitzHughNagumo: No leaks found (test output)

+

TestMonodomainMassLumping: No leaks found (test output)

+

TestMonodomainProblem: No leaks found (test output)

+

TestMonodomainPurkinjeAssemblersAndSolver: No leaks found (test output)

+

TestMonodomainPurkinjeProblem: No leaks found (test output)

+

TestMonodomainStiffnessMatrixAssembler: No leaks found (test output)

+

TestMonodomainTissue: No leaks found (test output)

+

TestMonodomainWithSvi: No leaks found (test output)

+

TestMonodomainWithTimeAdaptivity: No leaks found (test output)

+

TestMoreMechanics: No leaks found (test output)

+

TestMultiLobeAirwayGenerator: No leaks found (test output)

+

TestMutableMesh: No leaks found (test output)

+

TestMutableMeshRemesh: No leaks found (test output)

+

TestMutableVertexMesh: No leaks found (test output)

+

TestMutableVertexMeshOperationsWithPopulationSrn: No leaks found (test output)

+

TestMutableVertexMeshReMesh: No leaks found (test output)

+

TestMutableVertexMeshRosetteMethods: No leaks found (test output)

+

TestNeumannStimulus: No leaks found (test output)

+

TestNhsModelWithBackwardSolver: No leaks found (test output)

+

TestNode: No leaks found (test output)

+

TestNodeAttributes: No leaks found (test output)

+

TestNodeBasedCellPopulation: No leaks found (test output)

+

TestNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestNodeBasedCellPopulationWithBuskeUpdate: No leaks found (test output)

+

TestNodeBasedCellPopulationWithParticles: No leaks found (test output)

+

TestNodesOnlyMesh: No leaks found (test output)

+

TestNonCachedTetrahedralMesh: No leaks found (test output)

+

TestNonlinearElasticityTools: No leaks found (test output)

+

TestNonlinearSolvers: No leaks found (test output)

+

TestNormallyDistributedTargetAreaModifier: No leaks found (test output)

+

TestNumericFileComparison: No leaks found (test output)

+

TestNumericalMethods: No leaks found (test output)

+

TestObjectCommunicator: No leaks found (test output)

+

TestObsoleteBoxCollection: No leaks found (test output)

+

TestOdeBasedCellCycleModels: No leaks found (test output)

+

TestOdeBasedCellCycleModelsForCrypt: No leaks found (test output)

+

TestOdeBasedSrnModels: No leaks found (test output)

+

TestOdeLinearSystemSolver: No leaks found (test output)

+

TestOffLatticeCryptProjectionSimulation: No leaks found (test output)

+

TestOffLatticeRandomFieldGenerator: No leaks found (test output)

+

TestOffLatticeSimulation3d: No leaks found (test output)

+

TestOffLatticeSimulation: No leaks found (test output)

+

TestOffLatticeSimulationWithBuskeForces: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulation: No leaks found (test output)

+

TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d: No leaks found (test output)

+

TestOffLatticeSimulationWithPdes: No leaks found (test output)

+

TestOffLatticeSimulationWithVertexBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithCaBasedCellPopulation: No leaks found (test output)

+

TestOnLatticeSimulationWithPdes: No leaks found (test output)

+

TestOnLatticeSimulationWithPottsBasedCellPopulation: No leaks found (test output)

+

TestOperatorSplittingMonodomainSolver: No leaks found (test output)

+

TestOutputDirectoryFifoQueue: No leaks found (test output)

+

TestOutputFileHandler: No leaks found (test output)

+

TestPCBlockDiagonal: No leaks found (test output)

+

TestPCLDUFactorisation: No leaks found (test output)

+

TestPCTwoLevelsBlockDiagonal: No leaks found (test output)

+

TestPapillaryFibreCalculator: No leaks found (test output)

+

TestParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestParallelCellsGenerator: No leaks found (test output)

+

TestParallelColumnDataReaderWriter: No leaks found (test output)

+

TestParallelWriterPerformance: No leaks found (test output)

+

TestPdeSimulationTime: No leaks found (test output)

+

TestPdeTestClasses: No leaks found (test output)

+

TestPerElementWriter: No leaks found (test output)

+

TestPeriodicNodeBasedCellPopulationParallelMethods: No leaks found (test output)

+

TestPeriodicNodesOnlyMesh: No leaks found (test output)

+

TestPetscEvents: No leaks found (test output)

+

TestPetscMatTools: No leaks found (test output)

+

TestPetscSetup: No leaks found (test output)

+

TestPetscTools2: No leaks found (test output)

+

TestPetscTools: No leaks found (test output)

+

TestPetscVecTools: No leaks found (test output)

+

TestPlaneStimulusCellFactory: No leaks found (test output)

+

TestPostProcessingWriter: No leaks found (test output)

+

TestPottsBasedCellPopulation: No leaks found (test output)

+

TestPottsBasedCryptSimulation: No leaks found (test output)

+

TestPottsElement: No leaks found (test output)

+

TestPottsMesh: No leaks found (test output)

+

TestPottsMeshGenerator: No leaks found (test output)

+

TestPottsMeshReader: No leaks found (test output)

+

TestPottsMeshWriter: No leaks found (test output)

+

TestPottsUpdateRules: No leaks found (test output)

+

TestProblemDefinitions: No leaks found (test output)

+

TestProgressReporter: No leaks found (test output)

+

TestPropagationPropertiesCalculator: No leaks found (test output)

+

TestPseudoEcgCalculator: No leaks found (test output)

+

TestQuadraticBasisFunction: No leaks found (test output)

+

TestQuadraticMesh: No leaks found (test output)

+

TestQuadraturePointsGroup: No leaks found (test output)

+

TestRKC21IvpOdeSolver: No leaks found (test output)

+

TestRandomNumberGenerator: No leaks found (test output)

+

TestReplicatableVector: No leaks found (test output)

+

TestRepresentativeImmersedBoundarySimulations: No leaks found (test output)

+

TestRestitutionStimuli: No leaks found (test output)

+

TestRungeKuttaFehlbergIvpOdeSolver: No leaks found (test output)

+

TestRunningContactInhibitionSimulationsTutorial: No leaks found (test output)

+

TestRunningCryptSimulationsWithMutationsTutorial: No leaks found (test output)

+

TestRunningDeltaNotchSimulationsTutorial: No leaks found (test output)

+

TestRunningDifferentialAdhesionSimulationsTutorial: No leaks found (test output)

+

TestRunningImmersedBoundarySimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningMeshBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningNodeBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningPottsBasedSimulationsTutorial: No leaks found (test output)

+

TestRunningTumourSpheroidSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedCryptSimulationsTutorial: No leaks found (test output)

+

TestRunningVertexBasedSimulationsTutorial: No leaks found (test output)

+

TestRushLarsen: No leaks found (test output)

+

TestShovingCaBasedDivisionRules: No leaks found (test output)

+

TestSimpleCellCycleModels: No leaks found (test output)

+

TestSimpleCellCycleModelsForCrypt: No leaks found (test output)

+

TestSimpleDataWriter: No leaks found (test output)

+

TestSimpleImpedanceProblem: No leaks found (test output)

+

TestSimpleLinearEllipticSolver: No leaks found (test output)

+

TestSimpleLinearParabolicSolver: No leaks found (test output)

+

TestSimpleNonlinearEllipticSolver: No leaks found (test output)

+

TestSimpleTargetAreaModifier: No leaks found (test output)

+

TestSimulationTime: No leaks found (test output)

+

TestSimulationsWithEllipticBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithEllipticGrowingDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicBoxDomainPdeModifier: No leaks found (test output)

+

TestSimulationsWithParabolicGrowingDomainPdeModifier: No leaks found (test output)

+

TestSingleOdeWntCellCycleModel: No leaks found (test output)

+

TestSloughingCellKillers: No leaks found (test output)

+

TestSolveLaplacianWithQuadratics: No leaks found (test output)

+

TestSolvingCoupledPdes: No leaks found (test output)

+

TestSolvingNonlinearPdesTutorial: No leaks found (test output)

+

TestSolvingOdesTutorial: No leaks found (test output)

+

TestSolvingStiffOdeSystems: No leaks found (test output)

+

TestSpiralWaveAndPhase: No leaks found (test output)

+

TestSteadyStateRunner: No leaks found (test output)

+

TestStepSizeException: No leaks found (test output)

+

TestStimulus: No leaks found (test output)

+

TestStimulusBoundaryCondition: No leaks found (test output)

+

TestStimulusFactory: No leaks found (test output)

+

TestStokesFlowAssembler: No leaks found (test output)

+

TestStokesFlowSolver: No leaks found (test output)

+

TestStreeterFibreGenerator: No leaks found (test output)

+

TestSuperellipseGenerator: No leaks found (test output)

+

TestT2SwapCellKiller: No leaks found (test output)

+

TestTargetAreaLinearGrowthModifier: No leaks found (test output)

+

TestTetrahedralMesh: No leaks found (test output)

+

TestTimeAdaptivityController: No leaks found (test output)

+

TestTimeStepper: No leaks found (test output)

+

TestTimer: No leaks found (test output)

+

TestToroidal2dMesh: No leaks found (test output)

+

TestToroidal2dVertexMesh: No leaks found (test output)

+

TestToroidalHoneycombMeshGenerator: No leaks found (test output)

+

TestToroidalHoneycombVertexMeshGenerator: No leaks found (test output)

+

TestTransformations: No leaks found (test output)

+

TestTrianglesMeshReader: No leaks found (test output)

+

TestTysonNovak2001OdeSystem: No leaks found (test output)

+

TestUblasCustomFunctions: No leaks found (test output)

+

TestUniformGridRandomFieldGenerator: No leaks found (test output)

+

TestVanLeeuwen2009WntSwatCellCycleOdeSystem: No leaks found (test output)

+

TestVentilationProblem: No leaks found (test output)

+

TestVertexBasedCellPopulation: No leaks found (test output)

+

TestVertexBasedCellPopulationForCrypt: No leaks found (test output)

+

TestVertexBasedDivisionRules: No leaks found (test output)

+

TestVertexCryptBoundaryForce: No leaks found (test output)

+

TestVertexElement: No leaks found (test output)

+

TestVertexMesh: No leaks found (test output)

+

TestVertexMeshReader: No leaks found (test output)

+

TestVertexMeshWriter: No leaks found (test output)

+

TestVisualizingWithParaviewTutorial: No leaks found (test output)

+

TestVoltageInterpolaterOntoMechanicsMesh: No leaks found (test output)

+

TestVolumeTrackingModifier: No leaks found (test output)

+

TestVoronoiVertexMeshGenerator: No leaks found (test output)

+

TestVtkMeshReader: No leaks found (test output)

+

TestVtkNonlinearElasticitySolutionWriter: No leaks found (test output)

+

TestWarnings: No leaks found (test output)

+

TestWntCellCycleOdeSystem: No leaks found (test output)

+

TestWntConcentration: No leaks found (test output)

+

TestWritingPdeSolversTutorial: No leaks found (test output)

+

TestWritingPdeSolversTwoTutorial: No leaks found (test output)

+

TestWritingTestsTutorial: No leaks found (test output)

+

TestXmlMeshWriters: No leaks found (test output)


+ + diff --git a/log-files/index.html b/log-files/index.html index be191f636..4725951ae 100644 --- a/log-files/index.html +++ b/log-files/index.html @@ -15,6 +15,16 @@

Index of Valgrind Memcheck output

February 2025

+ + + + + +
+ 2025-02-12_21-17-58 + green377-fix-petsc-317-citation + aee988e63fdeb40b7d92437e4c0438a66095e1e9 +
2025-02-12_14-19-32