Failed quickstart test

[stanedav]

Hello, I am trying to setup pytest-wdl for testing my wdl scripts. I installed the package and I am trying to run example quickstart from your github.
The command I am running is:
pytest -s -vv --show-capture=all
But it failed on:
RuntimeError: Error localizing url https://github.com/ekg/freebayes/raw/65251646f8dd9c60e3db276e3c6386936b7cf60b/test/tiny/NA12878.chr22.tiny.bam
(Whole log is here:
[err.txt](https://github.com/EliLillyCo/pytest-wdl/files/5764732/err.txt

Could you please help me, to find where I am making a mistake?

[jdidion]

I don't think you're making a mistake. The issue seems to be with the availability of the file. Can you please make sure you can manually download the file - i.e. through your browser or using curl or wget - using the exact URL (https://github.com/ekg/freebayes/raw/65251646f8dd9c60e3db276e3c6386936b7cf60b/test/tiny/NA12878.chr22.tiny.bam).

[jdidion]

Oh I see - this is the issue: urllib.error.URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1123)>.

Please see https://stackoverflow.com/questions/50236117/scraping-ssl-certificate-verify-failed-error-for-http-en-wikipedia-org for the solution.

[jdidion]

It was reported that fixing the SSL issue resolved the initial problem, but the test still fails with the attached error log.
err2.txt