the error happended to Processing stage-03

[tq-quan]

Hello, dear developer, when I ran airway stages 3 on my data, there was always an error, do you konw how to solve it?
[18:52:15] Processing stage-03

[18:52:51] Output for Process 1/1 (Patient pat01)
STDOUT:
Model loaded with shape (462, 227, 385)
Average starting coordinate: [ 1. 176. 58.]
Closest starting coordinate to average: [1, 176, 58]
Writing distance to coords with shape: (514,)
distance_mask (462, 227, 385)

       STDERR:
       Traceback (most recent call last):
         File "/opt/conda/lib/python3.8/runpy.py", line 194, in _run_module_as_main
           return _run_code(code, main_globals, None,
         File "/opt/conda/lib/python3.8/runpy.py", line 87, in _run_code
           exec(code, run_globals)
         File "/opt/conda/lib/python3.8/site-packages/airway/tree_extraction/bfs_distance_method.py", line 154, in <module>
           main()
         File "/opt/conda/lib/python3.8/site-packages/airway/tree_extraction/bfs_distance_method.py", line 150, in main
           distance_mask = get_distance_in_model_from_skeleton(visited)
         File "/opt/conda/lib/python3.8/site-packages/airway/tree_extraction/bfs_distance_method.py", line 135, in get_distance_in_model_from_skeleton
           if model[adj] == 1:
       IndexError: index 462 is out of bounds for axis 0 with size 462

[LiquidFun]

Hey, I'm currently on holiday. I'll reply to you on May 5-ish. My initial guess is that your model is not continuous, but I'm not sure. If you are allowed to send the model, then send it to me (my first name @ gmail.com), I'll take a look.

…

On Thu, Apr 25, 2024, 19:14 tq-quan ***@***.***> wrote: Hello, dear developer, when I ran airway stages 3 on my data, there was always an error, do you konw how to solve it? [18:52:15] Processing stage-03 [18:52:51] Output for Process 1/1 (Patient pat01) STDOUT: Model loaded with shape (462, 227, 385) Average starting coordinate: [ 1. 176. 58.] Closest starting coordinate to average: [1, 176, 58] Writing distance to coords with shape: (514,) distance_mask (462, 227, 385) STDERR: Traceback (most recent call last): File "/opt/conda/lib/python3.8/runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "/opt/conda/lib/python3.8/runpy.py", line 87, in _run_code exec(code, run_globals) File "/opt/conda/lib/python3.8/site-packages/airway/tree_extraction/bfs_distance_method.py", line 154, in <module> main() File "/opt/conda/lib/python3.8/site-packages/airway/tree_extraction/bfs_distance_method.py", line 150, in main distance_mask = get_distance_in_model_from_skeleton(visited) File "/opt/conda/lib/python3.8/site-packages/airway/tree_extraction/bfs_distance_method.py", line 135, in get_distance_in_model_from_skeleton if model[adj] == 1: IndexError: index 462 is out of bounds for axis 0 with size 462 — Reply to this email directly, view it on GitHub <#20>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB7PESD3RBX4LCYUXUTLUE3Y7DQRZAVCNFSM6AAAAABGYVDE2CVHI2DSMVQWIX3LMV43ASLTON2WKOZSGI3DGMZSGE3DOOI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>