From b28bf8ce74f804d310933dd63540d46011eb9734 Mon Sep 17 00:00:00 2001
From: evantarbell <evan@dhcp205-217-240.wireless.buffalo.edu>
Date: Wed, 11 Sep 2019 10:01:08 -0400
Subject: [PATCH] output cpm scaling factor into log file

---
 src/HMMR_ATAC/Main_HMMR_Driver.java | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/HMMR_ATAC/Main_HMMR_Driver.java b/src/HMMR_ATAC/Main_HMMR_Driver.java
index 0fdbc04..88199ee 100644
--- a/src/HMMR_ATAC/Main_HMMR_Driver.java
+++ b/src/HMMR_ATAC/Main_HMMR_Driver.java
@@ -271,6 +271,7 @@ public static void main(String[] args) throws IOException {
 		
 		//calculate the cpm scaling factor for input into FragPileupGen. Use cpmScale=1 for no scaling
 		double cpmScale = pileupData.getCPMScale()/1000000;
+		log.println("ScalingFactor\t"+cpmScale);
 		
 		pileupData = null;