diff --git a/macapype/utils/utils_params.py b/macapype/utils/utils_params.py index fd118727..ac1b8ee9 100644 --- a/macapype/utils/utils_params.py +++ b/macapype/utils/utils_params.py @@ -127,6 +127,19 @@ def update_preparation_params(ssoft=[], subjects=None, sessions=None, "smoo_r_val": 1.0 } } + elif "halfrobustreg" in ssoft and "crop_aladin_pipe" \ + in params["short_preparation_pipe"]: + print("Using halfrobustreg option") + params["short_preparation_pipe"]["crop_aladin_pipe"] = { + "reg_T1_on_template": { + "nac_flag": True, + "rig_only_flag": True, + "nosym_flag": True, + "ln_val": 12, + "lp_val": 10, + "smoo_r_val": 1.0 + } + } return params, indiv_params, extra_wf_name if prep_pipe == "short_preparation_pipe":