From 327510f557e6e017eb9ee59c8a15630bee222d71 Mon Sep 17 00:00:00 2001
From: Ravnoor Gill <ravnoor@gmail.com>
Date: Sun, 15 Dec 2024 19:18:29 -0500
Subject: [PATCH] fix(ci): source env before running tests

---
 .github/workflows/test-inference-pipeline.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test-inference-pipeline.yml b/.github/workflows/test-inference-pipeline.yml
index 72d4d81..b2b9495 100644
--- a/.github/workflows/test-inference-pipeline.yml
+++ b/.github/workflows/test-inference-pipeline.yml
@@ -50,7 +50,10 @@ jobs:
           CI_TESTING_PRED_DIR: "/home/ga/io"
           
       - name: Run tests to compare outputs with previous validated runs
-        run: bash ./tests/run_tests.sh
+        run: |
+          eval "$(micromamba shell hook -s posix)"
+          micromamba activate deepFCD
+          bash ./tests/run_tests.sh
         env:
           CI_TESTING_PATIENT_ID: "sub-00055"
           CI_TESTING_PRED_DIR: "/home/ga/io"
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