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environment.yml
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name: scmodes
channels:
- aksarkar
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _pytorch_select=0.2=gpu_0
- _r-mutex=1.0.0=anacondar_1
- _tflow_select=2.3.0=mkl
- absl-py=0.9.0=py36_0
- astor=0.8.1=py36_0
- attrs=19.3.0=py_0
- backcall=0.2.0=py_0
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- blas=1.0=mkl
- bokeh=2.1.1=py36_0
- brotlipy=0.7.0=py36h7b6447c_1000
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.15.0=h7b6447c_1001
- ca-certificates=2020.6.24=0
- cairo=1.14.12=h8948797_3
- certifi=2020.6.20=py36_0
- cffi=1.14.0=py36h2e261b9_0
- chardet=3.0.4=py36_1003
- colorcet=2.0.2=py_0
- cryptography=2.9.2=py36h1ba5d50_0
- cudatoolkit=10.1.243=h6bb024c_0
- cudnn=7.6.5=cuda10.1_0
- curl=7.67.0=hbc83047_0
- cycler=0.10.0=py36_0
- dbus=1.13.16=hb2f20db_0
- decorator=4.4.2=py_0
- expat=2.2.9=he6710b0_2
- fontconfig=2.13.0=h9420a91_0
- freetype=2.10.2=h5ab3b9f_0
- fribidi=1.0.9=h7b6447c_0
- gast=0.4.0=py_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- glib=2.63.1=h5a9c865_0
- google-pasta=0.2.0=py_0
- graphite2=1.3.14=h23475e2_0
- grpcio=1.27.2=py36hf8bcb03_0
- gsl=2.4=h14c3975_4
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- h5py=2.10.0=py36hd6299e0_1
- harfbuzz=1.8.8=hffaf4a1_0
- hdf5=1.10.6=hb1b8bf9_0
- icu=58.2=he6710b0_3
- idna=2.10=py_0
- importlib-metadata=1.7.0=py36_0
- importlib_metadata=1.7.0=0
- iniconfig=1.0.1=py_0
- intel-openmp=2020.1=217
- ipykernel=5.3.4=py36h5ca1d4c_0
- ipython=7.16.1=py36h5ca1d4c_0
- ipython_genutils=0.2.0=py36_0
- jedi=0.17.1=py36_0
- jinja2=2.11.2=py_0
- joblib=0.16.0=py_0
- jpeg=9b=h024ee3a_2
- jupyter_client=6.1.6=py_0
- jupyter_console=6.1.0=py_0
- jupyter_core=4.6.3=py36_0
- keras-applications=1.0.8=py_1
- keras-preprocessing=1.1.0=py_1
- kiwisolver=1.2.0=py36hfd86e86_0
- krb5=1.16.4=h173b8e3_0
- lcms2=2.11=h396b838_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libcurl=7.67.0=h20c2e04_0
- libedit=3.1.20191231=h14c3975_1
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.12.4=hd408876_0
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_1
- libuuid=1.0.3=h1bed415_2
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=he19cac6_1
- lz4-c=1.9.2=he6710b0_1
- make=4.2.1=h1bed415_1
- markdown=3.2.2=py36_0
- markupsafe=1.1.1=py36h7b6447c_0
- mkl=2020.1=217
- mkl-service=2.3.0=py36he904b0f_0
- mkl_fft=1.1.0=py36h23d657b_0
- mkl_random=1.1.1=py36h0573a6f_0
- more-itertools=8.4.0=py_0
- ncurses=6.2=he6710b0_1
- ninja=1.10.0=py36hfd86e86_0
- numpy=1.19.1=py36hbc911f0_0
- numpy-base=1.19.1=py36hfa32c7d_0
- olefile=0.46=py36_0
- openssl=1.1.1g=h7b6447c_0
- packaging=20.4=py_0
- pandas=1.1.0=py36he6710b0_0
- pango=1.42.4=h049681c_0
- param=1.9.3=py_0
- parso=0.7.0=py_0
- pcre=8.44=he6710b0_0
- pexpect=4.8.0=py36_0
- pickleshare=0.7.5=py36_0
- pillow=7.2.0=py36hb39fc2d_0
- pip=20.2.2=py36_0
- pixman=0.40.0=h7b6447c_0
- pluggy=0.13.1=py36_0
- prompt-toolkit=3.0.5=py_0
- prompt_toolkit=3.0.5=0
- protobuf=3.12.4=py36he6710b0_0
- ptyprocess=0.6.0=py36_0
- py=1.9.0=py_0
- pycparser=2.20=py_2
- pyct=0.4.6=py36_0
- pygments=2.6.1=py_0
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=py_0
- pyqt=5.9.2=py36h05f1152_2
- pysocks=1.7.1=py36_0
- pytest=6.0.1=py36_0
- python=3.6.9=h265db76_0
- python-dateutil=2.8.1=py_0
- pytorch=1.4.0=cuda101py36h02f0884_0
- pytz=2020.1=py_0
- pyyaml=5.3.1=py36h7b6447c_1
- pyzmq=19.0.1=py36he6710b0_1
- qt=5.9.7=h5867ecd_1
- r-ashr=2.2.51.dev1=r35hf484d3e_0
- r-assertthat=0.2.0=r351h6115d3f_0
- r-backports=1.1.2=r351h96ca727_0
- r-base=3.5.1=h1e0a451_2
- r-brew=1.0_6=r351h6115d3f_4
- r-callr=2.0.4=r351h6115d3f_0
- r-cli=1.0.0=r351h6115d3f_1
- r-codetools=0.2_15=r351h6115d3f_0
- r-commonmark=1.5=r351h96ca727_0
- r-crayon=1.3.4=r351h6115d3f_0
- r-curl=3.2=r351hadc6856_1
- r-desc=1.2.0=r351h6115d3f_0
- r-descend=0.0.0.9000=r351_0
- r-devtools=1.13.6=r351h6115d3f_0
- r-digest=0.6.15=r351h96ca727_0
- r-doparallel=1.0.11=r351h6115d3f_0
- r-etrunct=0.1=r351h6115d3f_0
- r-expint=0.1.6=r351h96ca727_1
- r-fansi=0.2.3=r351h96ca727_0
- r-foreach=1.4.4=r351h6115d3f_0
- r-git2r=0.23.0=r351h96ca727_1
- r-glue=1.3.0=r351h96ca727_0
- r-httr=1.3.1=r351h6115d3f_1
- r-invgamma=1.1=r35h6115d3f_0
- r-irlba=2.3.2=r351h96ca727_0
- r-iterators=1.0.10=r351h6115d3f_0
- r-jsonlite=1.5=r351h96ca727_0
- r-lattice=0.20_35=r351h96ca727_0
- r-magrittr=1.5=r351h6115d3f_4
- r-mass=7.3_50=r351h96ca727_0
- r-matrix=1.2_14=r351h96ca727_0
- r-matrixmodels=0.4_1=r351h6115d3f_4
- r-memoise=1.1.0=r351h6115d3f_0
- r-mime=0.5=r351h96ca727_0
- r-mixsqp=0.3.45.dev1=r35hf484d3e_0
- r-openssl=1.0.2=r351h96ca727_1
- r-pillar=1.3.0=r351h6115d3f_0
- r-pkgbuild=1.0.0=r351h6115d3f_0
- r-pkgload=1.0.0=r351h29659fb_0
- r-praise=1.0.0=r351h6115d3f_4
- r-processx=3.1.0=r351h29659fb_0
- r-pscl=1.5.2=r351h96ca727_0
- r-purrr=0.2.5=r351h96ca727_0
- r-quantreg=5.36=r351ha65eedd_0
- r-r6=2.2.2=r351h6115d3f_0
- r-rcpp=1.0.4.6=r35h29659fb_0
- r-rcpparmadillo=0.8.600.0.0=r351h29659fb_0
- r-rlang=0.2.1=r351h96ca727_0
- r-roxygen2=6.1.0=r351h29659fb_0
- r-rprojroot=1.3_2=r351h6115d3f_0
- r-rstudioapi=0.7=r351h6115d3f_0
- r-sparsem=1.77=r351ha65eedd_0
- r-squarem=2017.10_1=r351h6115d3f_0
- r-stringi=1.2.4=r351h29659fb_0
- r-stringr=1.3.1=r351h6115d3f_0
- r-testthat=2.0.0=r351h29659fb_0
- r-tibble=1.4.2=r351h96ca727_0
- r-truncnorm=1.0_8=r351h96ca727_0
- r-utf8=1.1.4=r351h96ca727_0
- r-whisker=0.3_2=r351hf348343_4
- r-withr=2.1.2=r351h6115d3f_0
- r-xml2=1.2.0=r351h29659fb_0
- readline=7.0=h7b6447c_5
- requests=2.24.0=py_0
- scikit-learn=0.23.1=py36h423224d_0
- scipy=1.5.0=py36h0b6359f_0
- scqtl=0.1.dev1=py36_0
- setuptools=49.6.0=py36_0
- sip=4.19.8=py36hf484d3e_0
- six=1.15.0=py_0
- sqlite=3.32.3=h62c20be_0
- tensorboard=1.14.0=py36hf484d3e_0
- tensorflow=1.14.0=mkl_py36h2526735_0
- tensorflow-base=1.14.0=mkl_py36h7ce6ba3_0
- tensorflow-estimator=1.14.0=py_0
- termcolor=1.1.0=py36_1
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=h14c3975_0
- toml=0.10.1=py_0
- tornado=6.0.4=py36h7b6447c_1
- traitlets=4.3.3=py36_0
- typing_extensions=3.7.4.2=py_0
- urllib3=1.25.10=py_0
- wcwidth=0.2.5=py_0
- werkzeug=1.0.1=py_0
- wheel=0.34.2=py36_0
- wrapt=1.12.1=py36h7b6447c_1
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7b6447c_0
- zeromq=4.3.2=he6710b0_2
- zipp=3.1.0=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.5=h9ceee32_0
- pip:
- anndata==0.7.4
- get-version==2.1
- legacy-api-wrap==1.2
- llvmlite==0.34.0
- matplotlib==3.3.1
- natsort==7.0.1
- networkx==2.4
- numba==0.51.0
- numexpr==2.7.1
- patsy==0.5.1
- rpy2==3.2.4
- scanpy==1.5.1
- seaborn==0.10.1
- setuptools-scm==4.1.2
- simplegeneric==0.8.1
- statsmodels==0.12.0rc0
- tables==3.6.1
- tqdm==4.48.2
- tzlocal==2.1
- umap-learn==0.4.6
- wlra==0.1
prefix: /scratch/midway2/aksarkar/miniconda3/envs/scmodes