main

#!/bin/bash
#PBS -l nodes=1:ppn=1
#PBS -l walltime=02:00:00
#PBS -N detect_alpha_peak

# PBS is a computer software that performs job-scheduling
# Copyright (c) 2020 brainlife.io at University of Texas at Austin and Indiana U
#
# This is the main file run by the brainlife.io orchestration system
#
# Author: Franco Pestilli


set -e
set -x

# Make output directories
mkdir -p out_dir

# Run the actual python code
singularity exec docker://brainlife/mne:0.23dev python3 detect_alpha_peak.py

# Store PSD plot with alpha peak on product.json
cat << EOF > product.json
{
    "brainlife": [
       { 
           "type": "image/png", 
	   "name": "Alpha peak on mean spectrum",
           "base64": "$(base64 -w 0 out_dir/psd_mean.png)"
       },
       { 
           "type": "image/png", 
	   "name": "Power spectrum for all channels",
           "base64": "$(base64 -w 0 out_dir/psd_channels.png)"
       }
]
}
EOF