lionfish_number.sh

#!/bin/bash
# Bash script used to run the Lionfish source model on HPC computer (5 nodes 100 CPUs)

#To Run use command: sbatch Cope_ERGM_Bash.shn
#SBATCH -J Number_LF          # Name of the job
#SBATCH -o /home/jselwyn/Lion/Lion_number.out       # Name of file that will have program output
#SBATCH -e /home/jselwyn/Lion/Lion_number.err       # Name of the file that will have job errors, if any
#SBATCH -N 5           # Number of nodes ( the normal cluster partion has 22 total )
#SBATCH -n 100              # Number of cores ( my test allocated 2 per node )
#SBATCH -p normal           # Partition    
                  # (see available partitions and their number of nodes with sinfo --long -Node command )
#SBATCH -t 4-00:00:00	#Set time limit
#SBATCH --mail-user=
#SBATCH --mail-type=begin #email when job starts
#SBATCH --mail-type=end #email when job ends

module load openmpi
module load R/openmpi/intel/3.2.2

mpirun -np 1 R CMD BATCH /home/jselwyn/Lion/lionfish_number.R