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Changelog.md

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Changelog

Version 0.2.7-0.2.9

  • Tests to publish the package on PyPI.

Version 0.2.6

  • Added a step function to the univariate data generation module of the univariate class.
  • Added the functionality to export the univariate data. An example was added to the univariate notebook in the documentation.
  • Changed univariate data storage to dictionaries instead of arrays.

Version 0.2.5

  • Added a check which examples are implemented to the __init__ function of the batch class.

Version 0.2.4

  • Corrected the way the concentration profiles are returned after using a custom ODE file.
  • Created two new example notebooks for the custom ODE case (with and without additional arguments given for the ODE file).

Version 0.2.3

  • Added missing __init__ file for utility functions in ODE module.
  • Changed documentation for RtD.

Version 0.2.2

  • Added batch6 example.
  • Replaced residual odeint functions by the solve_ivp functions in the built-in batch examples.

Version 0.2.1

  • In the mimic class, the same plotting, train_test_splitting and exporting functionalities were added as for the batch class.
  • Replaced all the odeint functions by the solve_ivp functions.

Version 0.2.0

  • Added the functionality to hand over a custom ODE file and some noisy data. The fit_and_augment class in insidapy.augment.mimic will the fit the noisy data the model can then be used to generate new data.

Version 0.1.0

  • Made ready for public release.
  • Changed the name from "simulator" to "insidapy" (in-silico data (generation) in Python) to prevent possible confusion with other simulators if installed in the same environment.

Version 0.0.14

  • Split the batch and fedbatch examples in two different classes.
  • Adjusted the wording a bit to distinguish examples in fedbatch or batch operation mode.

Version 0.0.13

  • Included a bioreactor example in fedbatch operation mode.

Version 0.0.12

  • Included an option to show the implemented examples in the ODE module.

Version 0.0.11

  • Added chemical reaction examples.
  • Included the option to print the information about the example in a nice table.
  • Added extended reference information about the examples, which are also printed to the table.

Version 0.0.10

  • Added michaelis menten kinetics example to ODE module.

Version 0.0.9

  • Added plot-saving options for univariate class.
  • Corrected typo in the univariate class.

Version 0.0.8

  • Added another plotting option to visualize training and testing batches easily in the ODE module.

Version 0.0.7

  • Separated the ODEs to have a better overview. Now, a new file called ode_collection.py is available.

Version 0.0.6

  • Improved the instructions how to apply a train-test-split in the readme.
  • Added a check in the export function of the ODE module that the train-test-split was executed before letting the user export the training or testing data.

Version 0.0.5

  • Included the option to do the entire simulation with custom ODE files that are stored separately by the user.
  • Updated docs accordingly.

Version 0.0.4

  • Included Sphinx documentation and moved the examples folder one level up. Adjusted reame file accordingly.

Version 0.0.3

  • Included a multivariate class with the Rosenbrock function as example. The function data (noisy and noisfree) can be exported as an excel file.

Version 0.0.2

  • Included the option of overwriting the bounds of the initial conditions and the time span for the ODE integration. Renamed the package from "emulator" to "simulator".

Version 0.0.1

  • Creation of the emulator.