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Functionome browser improvements: add some additional links from the functionome browser to other sites #2413

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kltm opened this issue Jan 17, 2025 · 2 comments
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@kltm
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kltm commented Jan 17, 2025

Add some additional links from the functionome browser to other sites, both internal and external:

  • AmiGO
  • QuickGO ?
  • NCBI?
  • Ensembl?
  • Links to downloads of functionome annotations (GAF)
  • From functionome gene detail page, link to evolutionary model for family (at pantree.org) and (maybe) link to all experimental annotations at AmiGO and/or QuickGO

(action item for managers to spec out, Tremayne to implement)

@thomaspd
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thomaspd commented Feb 1, 2025

The link to AmiGO has been added, and we won't add links to QuickGO or Ensembl for now. Please add the following links:

  1. On the gene page, under external links, add one more link to NCBI Gene, using the following URL pattern: https://www.ncbi.nlm.nih.gov/gene/?term=Q9H568 (the term is the Swiss-Prot identifier)
  2. On the menu, clicking on Downloads currently shows two choices: as CSV, as JSON. The menu should have more choices:

@thomaspd
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thomaspd commented Feb 4, 2025

This is now covered by issue #2430, so I'm closing this one.

@thomaspd thomaspd closed this as completed Feb 4, 2025
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