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index.html
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<!DOCTYPE html>
<html>
<head>
<!-- Google tag (gtag.js) -->
<script async src="https://www.googletagmanager.com/gtag/js?id=G-E0ZMRPFXJY"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag() { dataLayer.push(arguments); }
gtag('js', new Date());
gtag('config', 'G-E0ZMRPFXJY');
</script>
<title>IBL Brain Atlas</title>
<!-- CSS -->
<!-- Roboto font -->
<link rel="stylesheet" href="css/wvm8pxc.css">
<!-- Raleway font -->
<link href='//fonts.googleapis.com/css?family=Raleway:400,300,600' rel='stylesheet' type='text/css'>
<!-- Normalize -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/normalize/8.0.1/normalize.min.css" integrity="sha512-NhSC1YmyruXifcj/KFRWoC561YpHpc5Jtzgvbuzx5VozKpWvQ+4nXhPdFgmx8xqexRcpAglTj9sIBWINXa8x5w==" crossorigin="anonymous" referrerpolicy="no-referrer" />
<!-- Custom styles -->
<link rel="stylesheet" href="css/main.css" />
<link rel="stylesheet" href="data/css/region_colors.css" />
<link rel="stylesheet" id="style-default-regions" href="data/css/default_region_colors_beryl.css" />
<!-- Dynamic CSS styles -->
<style id="style-regions"></style>
<style id="style-features"></style>
<style id="style-volume"></style>
<style id="style-selector"></style>
<style id="style-highlighter"></style>
<style id="style-search"></style>
<!-- Javascript -->
<!-- Pako (gzip) -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/pako/2.0.3/pako.min.js"></script>
<!-- Dexie (IndexedDB wrapper) -->
<script src="js/dexie.min.js"></script>
<!-- For the SVG PNG export -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/html2canvas/1.4.1/html2canvas.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/jszip/3.7.1/jszip.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/FileSaver.js/2.0.5/FileSaver.min.js"></script>
<!-- Unity -->
<script src="Build/webgl.loader.js"></script>
<!-- Top-level entry-point script -->
<script type="module" src="js/main.js"></script>
</head>
<body>
<!-- CONTROL PANEL -->
<div id="control-panel">
<details>
<!-- CONTROL PANEL HEADER -->
<summary>control panel</summary>
<!-- MAPPING -->
<div class="label">mapping</div>
<div class="control">
<select id="mapping-dropdown">
<option value="allen">allen</option>
<option value="beryl">beryl</option>
<option value="cosmos">cosmos</option>
</select>
</div>
<!-- STAT -->
<div class="label">statistic</div>
<div class="control">
<select id="stat-dropdown">
<option value="mean">mean</option>
<option value="median">median</option>
<option value="std">std</option>
<option value="min">min</option>
<option value="max">max</option>
</select>
</div>
<!-- COLORMAP -->
<div class="label">colormap</div>
<div class="control">
<select id="colormap-dropdown">
<option value="magma">magma</option>
<option value="YlGn">YlGn</option>
<option value="YlOrRd">YlOrRd</option>
<option value="Reds">Reds</option>
<option value="Purples">Purples</option>
<option value="Blues">Blues</option>
<option value="cividis">cividis</option>
<option value="viridis">viridis</option>
</select>
</div>
<!-- COLORMAP RANGE -->
<div class="label">colormap range</div>
<div class="control">
<input type="number" disabled="true" class="input-number" id="colormap-min-input">
<input type="range" step="0.1" min="0" max="100" value="0" class="slider" id="colormap-min">
</div>
<div class="control">
<input type="number" disabled="true" class="input-number" id="colormap-max-input">
<input type="range" step="0.1" min="0" max="100" value="100" class="slider" id="colormap-max">
</div>
<!-- LOG SCALE -->
<!-- <div class="label">log scale</div> -->
<div class="control">
<label>
<input type="checkbox" id="log-scale">log scale
</label>
<!-- <input type="checkbox" class="checkbox" id="log-scale"> -->
</div>
<!-- BUTTONS -->
<div class="controls">
<div id="connect-status" class="status disconnected">
<div class="icon"></div>
<div class="text"></div>
</div>
<button id="connect-button">connect</button>
<button id="export-button">export</button>
<button id="reset-view-button">reset view</button>
<button id="clear-cache-button">clear cache</button>
</div>
</details>
</div>
<!-- DISPATCHER -->
<div id="dispatcher"></div>
<!-- TOOLTIP -->
<div id="region-info"></div>
<div id="dot-image-container">
<img src="" id="dot-image">
<button id="close-button">x</button>
</div>
<!-- SHARE BUTTON -->
<!-- <div id="share-wrapper">
<button id="share-button">share</button>
</div> -->
<!-- SPLASH -->
<div id="splash">
<div id="splash-loading">
<span class="loader"></span>
Loading... <span class="progress">0</span>%<br>
<span id="splash-description" class="description"></span>
</div>
</div>
<!-------------------------------------------------------------------------------------------->
<!-- MAIN CONTAINER -->
<!-------------------------------------------------------------------------------------------->
<div id="container">
<!-- HEADER -->
<header id="header">
<nav>
<!-- IBL LOGO -->
<a href="/"><img src="/images/ibl.png"></a>
<!-- MENU -->
<ul>
<li><a href="/">Home</a></li>
<li><a href="javascript:app.panel.share();" id="share-button">Share</a></li>
<li><a href="javascript:app.feature.download();">Download</a></li>
<li><a href="https://www.internationalbrainlab.com/">Lab</a></li>
<li><a href="https://atlas.internationalbrainlab.org/docs/"><strong>Doc</strong></a></li>
</ul>
</nav>
</header>
<!-- BAR HEADER -->
<div id="bar-plot-header" class="bar-plot">
<!-- BUCKET SELECTION -->
<div class="control">
<select id="bucket-dropdown">
</select>
</div>
<!-- BUCKET BUTTONS -->
<div class="control">
<div id="button-remove-bucket" title="remove the current custom bucket">-</div>
<div id="button-refresh-bucket" title="refresh the current bucket">↻</div>
<div id="button-new-bucket" title="add an existing bucket">+</div>
<div id="button-upload" title="upload a local feature">⇧</div>
</div>
<!-- FEATURE TREE -->
<div id="feature-tree">
</div>
<!-- COLOR BAR -->
<div id="bar-scale">
<div class="colorbar">
</div>
<hr>
<div class="wrapper">
<div class="min"></div>
<div class="max"></div>
</div>
</div>
<!-- SELECTED REGIONS -->
<div id="bar-selected-wrapper">
<div id="bar-selected-title">
<!-- Selected regions (<a href="javascript:app.selector.clear(); app.region.clearSelection(); if (app.unity) app.unity.update();">clear</a>) -->
Selected regions (<a id="clear-selection" href="javascript:;">clear</a>)
</div>
<ul id="bar-selected-list">
</ul>
</div>
<!-- FEATURE SEARCH BAR -->
<div id="bar-plot-search">
<!-- <p>type a region name or acronym. Exact acronym match: <code>acronym=FRP</code></p> -->
<input type="text" id="search-input" placeholder="search... hover for help" title="ex: 'anterior cingulate area', 'FRP', 'acronym=ACAd'">
</div>
</div>
<!-- BAR PLOT -->
<div id="bar-plot" class="bar-plot">
<ul id="bar-plot-list"></ul>
</div>
<!-- CORONAL -->
<div id="svg-coronal-container" class="svg-wrapper">
<div id="maximizer-coronal" class="maximizer"></div>
<!-- SVG container -->
<div id="svg-coronal-container-inner" class="svg-canvas-container">
<canvas id="canvas-coronal" width="456" height="320"></canvas>
<svg xmlns="http://www.w3.org/2000/svg" id="svg-coronal" version="1.1" viewBox="58 50 356 250">
<g id="figure-coronal">
</g>
<g id="lines-coronal">
<line id="coronal-vline" x1="237" y1="50" x2="237" y2="300" stroke="#333" stroke-width="1.5px" />
<line id="coronal-hline" x1="70" y1="169" x2="404" y2="169" stroke="#333" stroke-width="1.5px" />
</g>
</svg>
</div>
<!-- Slider -->
<div id="slider-coronal-container" class="slider-container">
<input type="range" class="slider" id="slider-coronal" min="0" max="1319" step="2">
<div class="slice-label">coronal projection</div>
<div class="coord-value" id="coord-ap">AP: -1200</div>
</div>
</div>
<!-- SAGITTAL -->
<div id="svg-sagittal-container" class="svg-wrapper">
<div id="maximizer-sagittal" class="maximizer"></div>
<!-- SVG container -->
<div id="svg-sagittal-container-inner" class="svg-canvas-container">
<canvas id="canvas-sagittal" width="528" height="320"></canvas>
<svg xmlns="http://www.w3.org/2000/svg" id="svg-sagittal" version="1.1" viewBox="56 66 358 217">
<g id="figure-sagittal">
</g>
<g id="lines-sagittal">
<line id="sagittal-vline" x1="236" y1="45" x2="236" y2="280" stroke="#333" stroke-width="1px" />
<line id="sagittal-hline" x1="50" y1="170" x2="420" y2="170" stroke="#333" stroke-width="1px" />
</g>
</svg>
</div>
<!-- Slider -->
<div id="slider-sagittal-container" class="slider-container">
<input type="range" class="slider" id="slider-sagittal" min="0" max="1139" step="2">
<div class="slice-label">sagittal projection</div>
<div class="coord-value" id="coord-ml">ML: -39</div>
</div>
</div>
<!-- HORIZONTAL -->
<div id="svg-horizontal-container" class="svg-wrapper">
<div id="maximizer-horizontal" class="maximizer"></div>
<!-- SVG container -->
<div id="svg-horizontal-container-inner" class="svg-canvas-container">
<canvas id="canvas-horizontal" width="456" height="528"></canvas>
<svg xmlns="http://www.w3.org/2000/svg" id="svg-horizontal" version="1.1" viewBox="122 42 230 266">
<g id="figure-horizontal">
</g>
<g id="lines-horizontal">
<line id="horizontal-vline" x1="237" y1="35" x2="237" y2="315" stroke="#333" stroke-width="1.5px" />
<line id="horizontal-hline" x1="120" y1="174" x2="350" y2="174" stroke="#333" stroke-width="1.5px" />
</g>
</svg>
</div>
<!-- Slider -->
<div id="slider-horizontal-container" class="slider-container">
<input type="range" class="slider" id="slider-horizontal" min="0" max="799" step="2">
<div class="slice-label">horizontal projection</div>
<div class="coord-value" id="coord-dv">DV: -3668</div>
</div>
</div>
<!-- SWANSON -->
<div id="svg-swanson-container" class="svg-wrapper">
<div id="maximizer-swanson" class="maximizer"></div>
<svg xmlns="http://www.w3.org/2000/svg" id="svg-swanson" version="1.1" viewBox="60 20 340 300">
<g id="figure-swanson">
</g>
</svg>
<div id="slider-swanson-container">
<input type="range" class="slider" style="visibility: hidden;">
<div class="slice-label">Swanson projection</div>
</div>
</div>
<!-- UNITY -->
<div id="unity-container">
<div id="maximizer-unity" class="maximizer"></div>
<canvas id="unity-canvas"></canvas>
<div id="slider-unity-container">
<input type="range" class="slider" id="slider-unity" min="0" max="1" step="0.001" value="0">
<div class="slice-label">3D view</div>
<div class="coord-value" id="coord-dv"></div>
</div>
</div>
<!-- TOP -->
<div id="svg-top-container" class="svg-wrapper">
<div id="maximizer-top" class="maximizer"></div>
<svg xmlns="http://www.w3.org/2000/svg" id="svg-top" version="1.1" viewBox="60 20 340 300">
<g id="figure-top">
</g>
<g id="lines-top">
<line id="top-vline" x1="236" y1="30" x2="236" y2="400" stroke="#333" stroke-width="1.5px" />
<line id="top-hline" x1="120" y1="174" x2="350" y2="174" stroke="#333" stroke-width="1.5px" />
</g>
</svg>
<div id="slider-top-container">
<input type="range" class="slider" style="visibility: hidden;">
<div class="slice-label">top projection</div>
</div>
</div>
<!-- FOOTER -->
<footer id="footer">
<nav>
<a href="https://www.internationalbrainlab.com/">International Brain Laboratory</a> — 2023
</nav>
</footer>
</div>
</body>
</html>