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Optimal Pairwise Sequence Alignment

Implementation of the Needleman-Wunsch and Smith-Waterman algorithms as an interactive website.

kylebatucal.github.io/sequence-alignment

Features:

  • Dynamic programming matrix visualization updates in real-time
  • Shows ALL optimal paths (performed using a depth-first search)
  • Adjustable parameters
  • Pure, vanilla HTML/CSS/Javascript
  • Mobile friendly