how does GiniClust normalize data?

[Vivianstats]

Hello,

Can you give a more detailed description regarding how the raw UMI counts are normalized in GiniClust? I did not find such information in the publication. Thank you very much!

[gcyuan]

Please note this is an older version of GiniClust, which can only detect rare cell clusters. In our newer versions (v2.0 and v3.0) we have improved the method so that it can detect both rare and common cell types. The latest version (v3.0) can be found here: https://github.com/rdong08/GiniClust3. We use Scanpy to normalize gene expression values.