diff --git a/.gitignore b/.gitignore index a298eaf..d00ba2c 100644 --- a/.gitignore +++ b/.gitignore @@ -16,8 +16,8 @@ .idea -temp/ +tempdata/ .temp/ -testdata/ +data/ internal/service diff --git a/README.md b/README.md index 38f6bdd..c2f66f4 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,65 @@ # go-kriging -[![GoDoc](https://godoc.org/github.com/liuvigongzuoshi/go-kriging?status.svg)](https://godoc.org/github.com/liuvigongzuoshi/go-kriging) +[![GoDoc](https://godoc.org/github.com/liuvigongzuoshi/go-kriging?status.svg)](https://pkg.go.dev/github.com/liuvigongzuoshi/go-kriging) -Golang Multi-Goroutine spatial interpolation algorithm library for geospatial prediction and mapping via ordinary kriging +Golang Multi-Goroutine spatial interpolation algorithm library for geospatial prediction and mapping via ordinary kriging. + +Based on [oeo4b/kriging.js](https://github.com/oeo4b/kriging.js) refactoring and optimized the algorithm and added some new features. + +## Fitting a Model + +The train method with the new ordinaryKriging fits your input to whatever variogram model you specify - gaussian, exponential or spherical - and returns a variogram variable. + + +```go +import "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" + +func main() { + sigma2 := 0 + alpha := 100 + ordinaryKriging := ordinarykriging.NewOrdinary(values, x, y) + variogram = ordinaryKriging.Train(ordinarykriging.Spherical, sigma2, alpha) +} +``` + +## Predicting New Values + +Values can be predicted for new coordinate pairs by using the predict method with the new ordinaryKriging. + +```go +import "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" + +func main() { + // ... + // Pair of new coordinates to predict + xnew := 0.5481 + ynew := 0.4455 + tpredicted := ordinaryKriging.predict(xnew, ynew) +} +``` + +## Variogram and Probability Model + +The various variogram models can be interpreted as kernel functions for 2-dimensional coordinates a, b and parameters nugget, range, sill and A. Reparameterized as a linear function, with w = [nugget, (sill-nugget)/range], this becomes: + +- Gaussian: k(a,b) = w[0] + w[1] * ( 1 - exp{ -( ||a-b|| / range )2 / A } ) +- Exponential: k(a,b) = w[0] + w[1] * ( 1 - exp{ -( ||a-b|| / range ) / A } ) +- Spherical: k(a,b) = w[0] + w[1] * ( 1.5 * ( ||a-b|| / range ) - 0.5 * ( ||a-b|| / range )3 ) + +The variance parameter α of the prior distribution for w should be manually set, according to: + +- w ~ N(w|0, αI) + +Using the fitted kernel function hyperparameters and setting K as the Gram matrix, the prior and likelihood for the gaussian process become: + +- y ~ N(y|0, K) +- t|y ~ N(t|y, σ2I) + +The variance parameter σ2 of the likelihood reflects the error in the gaussian process and should be manually set. + + +## Other + +[kriging-wasm example](https://github.com/liuvigongzuoshi/kriging-wasm) - Test example used by wasm compiled with go-kriging algorithm code. + +[go-kriging-service](https://github.com/liuvigongzuoshi/go-kriging-service) - Call the REST service written by the go-kriging algorithm package, which supports concurrent calls by multiple users, and has a simple logging and fault-tolerant recovery mechanism. diff --git a/examples/csv/main.go b/examples/csv/main.go index eb05f7d..0b7ee65 100644 --- a/examples/csv/main.go +++ b/examples/csv/main.go @@ -3,6 +3,7 @@ package main import ( "encoding/csv" "fmt" + "image/color" "image/png" "io/ioutil" @@ -15,18 +16,21 @@ import ( "runtime/pprof" "github.com/liuvigongzuoshi/go-kriging/canvas" - "github.com/liuvigongzuoshi/go-kriging/ordinary" + "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" "github.com/liuvigongzuoshi/go-kriging/pkg/json" ) -const dirPath = "testdata" +const testDataDirPath = "testdata" +const tempDataDirPath = "tempdata" +const cpuProfileFilePath = tempDataDirPath + "/cpu_profile" +const memProfileFilePath = tempDataDirPath + "/mem_profile" func main() { - cpuProfile, _ := os.Create("./testdata/cpu_profile") + cpuProfile, _ := os.Create(cpuProfileFilePath) if err := pprof.StartCPUProfile(cpuProfile); err != nil { log.Fatal(err) } - //memProfile, _ := os.Create("./testdata/mem_profile") + //memProfile, _ := os.Create(memProfileFilePath) //if err := pprof.WriteHeapProfile(memProfile); err != nil { // log.Fatal(err) //} @@ -36,19 +40,20 @@ func main() { //memProfile.Close() }() - data, err := readCsvFile("examples/csv/data/2045.csv") + data, err := readCsvFile("examples/csv/testdata/2045.csv") if err != nil { log.Fatal(err) } - polygon, err := readGeoJsonFile("examples/csv/data/yn.json") + polygon, err := readGeoJsonFile("examples/csv/testdata/yn.json") if err != nil { log.Fatal(err) } - defer timeCost()("训练模型加插值总耗时") + defer timeCost()("训练模型与插值生成网格图片总耗时") - ordinaryKriging := ordinary.NewOrdinary(data["values"], data["x"], data["y"]) - _ = ordinaryKriging.Train(ordinary.Spherical, 0, 100) + ordinaryKriging := ordinarykriging.NewOrdinary(data["values"], data["x"], data["y"]) + _ = ordinaryKriging.Train(ordinarykriging.Spherical, 0, 100) + _ = polygon gridPlot(ordinaryKriging, polygon) //var wg sync.WaitGroup @@ -61,18 +66,17 @@ func main() { // defer wg.Done() // contourRectanglePng(ordinaryKriging) //}() - //wg.Wait() } -func gridPlot(ordinaryKriging *ordinary.Variogram, polygon ordinary.PolygonCoordinates) { +func gridPlot(ordinaryKriging *ordinarykriging.Variogram, polygon ordinarykriging.PolygonCoordinates) { defer timeCost()("插值生成网格图片耗时") gridMatrices := ordinaryKriging.Grid(polygon, 0.01) - ctx := ordinaryKriging.Plot(gridMatrices, 500, 500, gridMatrices.Xlim, gridMatrices.Ylim, ordinary.DefaultGridLevelColor) + ctx := ordinaryKriging.Plot(gridMatrices, 500, 500, gridMatrices.Xlim, gridMatrices.Ylim, ordinarykriging.DefaultGridLevelColor) subTitle := &canvas.TextConfig{ Text: "球面半变异函数模型", - FontName: "testdata/fonts/source-han-sans-sc/regular.ttf", + FontName: testDataDirPath + "/fonts/source-han-sans-sc/regular.ttf", FontSize: 28, Color: color.RGBA{R: 0, G: 0, B: 0, A: 255}, OffsetX: 252, @@ -87,18 +91,18 @@ func gridPlot(ordinaryKriging *ordinary.Variogram, polygon ordinary.PolygonCoord if err != nil { log.Fatal(err) } else { - saveBuffer("grid.png", buffer) + saveBufferFile("grid.png", buffer) } //writeFile("gridMatrices.json", gridMatrices) } -func contourRectanglePng(ordinaryKriging *ordinary.Variogram) { +func contourRectanglePng(ordinaryKriging *ordinarykriging.Variogram) { defer timeCost()("插值生成矩形图片耗时") xWidth, yWidth := 800, 800 contourRectangle := ordinaryKriging.Contour(xWidth, yWidth) - pngPath := fmt.Sprintf("%v/%v.png", dirPath, time.Now().Format("2006-01-02 15:04:05")) - ctx := ordinaryKriging.PlotRectangleContour(contourRectangle, 500, 500, contourRectangle.Xlim, contourRectangle.Ylim, ordinary.DefaultLegendColor) + pngPath := fmt.Sprintf("%v/%v.png", tempDataDirPath, time.Now().Format("2006-01-02 15:04:05")) + ctx := ordinaryKriging.PlotRectangleContour(contourRectangle, 500, 500, contourRectangle.Xlim, contourRectangle.Ylim, ordinarykriging.DefaultLegendColor) img := ordinaryKriging.PlotPng(contourRectangle) err := os.MkdirAll(filepath.Dir(pngPath), os.ModePerm) @@ -116,7 +120,7 @@ func contourRectanglePng(ordinaryKriging *ordinary.Variogram) { if err != nil { log.Fatal(err) } else { - saveBuffer("rectangle.png", buffer) + saveBufferFile("rectangle.png", buffer) } } @@ -134,7 +138,7 @@ func readCsvFile(filePath string) (map[string][]float64, error) { records, err := csv.NewReader(f).ReadAll() if err != nil { - log.Fatal("Unable to parse file as CSV for "+filePath, err) + log.Fatal("Unable to parse file as CSV for\n "+filePath, err) return nil, err } @@ -159,18 +163,18 @@ func readCsvFile(filePath string) (map[string][]float64, error) { data := map[string][]float64{"values": values, "x": lons, "y": lats} //fmt.Printf("values %#v\n lons %#v\n lats %#v\n", values, lons, lats) - // writeFile("data.json", data) + //writeFile("tempdata.json", tempdata) return data, nil } -func readGeoJsonFile(filePath string) (ordinary.PolygonCoordinates, error) { +func readGeoJsonFile(filePath string) (ordinarykriging.PolygonCoordinates, error) { content, err := ioutil.ReadFile(filePath) if err != nil { - log.Fatal("Unable to read input file "+filePath, err) + log.Fatal("Unable to read input file \n"+filePath, err) return nil, err } - var polygonGeometry ordinary.PolygonGeometry + var polygonGeometry ordinarykriging.PolygonGeometry err = json.Unmarshal(content, &polygonGeometry) if err != nil { log.Fatalf("invalid json: %v", err) @@ -189,7 +193,7 @@ func timeCost() func(name string) { } func writeFile(fileName string, v interface{}) { - filePath := fmt.Sprintf("%v/%v %v", dirPath, time.Now().Format("2006-01-02 15-04-05"), fileName) + filePath := fmt.Sprintf("%v/%v %v", tempDataDirPath, time.Now().Format("2006-01-02 15-04-05"), fileName) fmt.Printf("%#v\n", filePath) // fmt.Printf("%#v\n", v) content, err := json.Marshal(v) @@ -199,8 +203,8 @@ func writeFile(fileName string, v interface{}) { ioutil.WriteFile(filePath, content, os.ModePerm) } -func saveBuffer(fileName string, content []byte) { - filePath := fmt.Sprintf("%v/%v %v", dirPath, time.Now().Format("2006-01-02 15-04-05"), fileName) +func saveBufferFile(fileName string, content []byte) { + filePath := fmt.Sprintf("%v/%v %v", tempDataDirPath, time.Now().Format("2006-01-02 15-04-05"), fileName) fmt.Printf("%#v\n", filePath) ioutil.WriteFile(filePath, content, os.ModePerm) } diff --git a/examples/csv/data/100.csv b/examples/csv/testdata/100.csv similarity index 100% rename from examples/csv/data/100.csv rename to examples/csv/testdata/100.csv diff --git a/examples/csv/data/2045.csv b/examples/csv/testdata/2045.csv similarity index 100% rename from examples/csv/data/2045.csv rename to examples/csv/testdata/2045.csv diff --git a/examples/csv/data/yn.json b/examples/csv/testdata/yn.json similarity index 100% rename from examples/csv/data/yn.json rename to examples/csv/testdata/yn.json diff --git a/examples/tinygo/main.go b/examples/tinygo/main.go index bea0cbf..f51cd87 100644 --- a/examples/tinygo/main.go +++ b/examples/tinygo/main.go @@ -1 +1,1843 @@ -package tinygo +package main + +import ( + "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" +) + +// tinygo build -o kriging.wasm -opt z -heap-size 2048M -target wasm ./main.go + +func main() { + println("Instantiate, Kriging WebAssembly from TinyGo! v0.0.4") +} + +//export OrdinaryKrigingFunc +func OrdinaryKrigingFunc() int { + //done := make(chan *ordinary.GridMatrices, 0) + values := []float64{9.6, 5.3, 10.2, 5.4, 12.8, 7.5, 10.5, 18.7, 9.4, 12.4, 13, 10.8, 12, 13.2, 17.5, 14.1, 12.9, 10, 13.1, 10.7, 5.7, 10.4, 8, 10.3, 11, 11.8, 4.7, 11.7, 15.8, 5.3, 10.6, 16.4, 12.9, 12.2, 6.4, 10.6, 12.3, 11.2, 8.9, 17.5, 13.2, 10.7, 10.4, 12.6, 8.1, 6.7, 13, 14.6, 8.1, 8.4, 9.6, 8.5, 5.7, 11.4, 15.8, 10.9, 8, 14.7, 15.5, 11.7, 15.7, 9.9, 12.2, 17.9, 9.5, 16.6, 10.1, 10.1, 12.3, 15.3, 11.3, 14.5, 5.5, 15.4, 10.7, 18.9, 15.5, 13.7, 11.9, 16.3, 14.7, 14.8, 15.1, 20.4, 11.3, 12.1, 9.7, 13.1, 3.6, 11.9, 5.6, 14.4, 12, 13.1, 8.9, 6.7, 9.8, 11.7, 12.1, 15.4, 8, 12.3, 14.2, 13.4, 9.4, 0.6, 13.2, 11.6, 15.3, 12, 15.5, 8.9, 18.9, 13.3, 3.8, 12.5, 10.8, 15.5, 9, 12.8, 12.7, 11.3, 11.8, 12.2, 11.2, 12.2, 19.6, 10.9, 16.1, 9.5, 18.9, 10.9, 13, 13.6, 11.4, 17.5, 12, 13.7, 10.1, 17, 9, 10.9, 12.4, 11.7, 4.9, 12.9, 5.6, 8.6, 8.4, 9.4, 6.5, 9.7, 5.5, 12.6, 13.2, 13.6, 6.2, 9.9, 12, 6.6, 8.9, 18.5, 10.8, 14.6, 8.1, 10.4, 15.6, 9.5, 9.2, 15.6, 13.7, 11.3, 13.4, 11.8, 9.8, 14.5, 9.6, 10.4, 13.3, 9.7, 12.8, 6.9, 7.3, 8.6, 18.4, 6.1, 20.5, 17.1, 11.8, 9.2, 9.9, 9.8, 5.6, 9.8, 19.8, 11.2, 13.1, 12.4, 9, 13, 8.9, 7.7, 14.9, 16.1, 9.9, 7.4, 11.6, 13.5, 2, 4.5, 15.7, 8.7, 9, 13.7, 14.6, 11, 13.3, 8.9, 17.9, 11.6, 15.8, 20.4, 14.8, 14, 10.9, 8.5, 10.5, 15.3, 10.9, 9.4, 13.1, 12.2, 10.3, 10.1, 19, 12, 11.2, 14.1, 11.2, 10.7, 9.4, 11.5, 8.3, 11.4, 6.7, 8.3, 12.7, 15, 17.3, 13.4, 13.8, 11.2, 13.2, 14.4, 10.8, 12.2, 14.7, 13.2, 9.7, 12.2, 12.6, 10.7, 10.3, 12.9, 7.2, 10.7, 13.6, 12.3, 16.6, 14.7, 16.6, 13.1, 8.5, 13.8, 13.4, 7.7, 12.8, 7, 8.5, 16.7, 11, 9.5, 12.2, 8.5, 11.9, 17.8, 11.9, 12, 10, 9.4, 18.3, 20.2, 13.9, 13.2, 10, 6.5, 10.8, 9.4, 8, 9.2, 10.4, 14.2, 10.3, 13.7, 15, 13.9, 3.9, 14, 11.5, 13.3, 12.5, 10.7, 10.8, 15.7, 11.9, 7.6, 9.9, 5.5, 11.2, 14.4, 11.4, 8, 13.8, 9.5, 8.8, 12, 10.5, 7.9, 10, 14.3, 15.1, 11.8, 13.9, 14.7, 10.6, 5, 16.1, 11.1, 10.9, 12.2, 13, 13.5, 11, 10, 8.1, 12.1, 10, 15.1, 13.6, 14.8, 15.3, 12.1, 16.6, 11.3, 14.2, 9.7, 12.1, 7.9, 15.3, 10.9, 15.4, 18.1, 12.3, 10.8, 14.2, 11.2, 19.6, 6, 13.1, 19.1, 10, 15.3, 11.2, 12.4, 12.8, 18.6, 11.7, 12.3, 13.5, 10.4, 11.5, 8.9, 9, 11.9, 11.8, 12.1, 15.1, 9.7, 4.4, 10.8, 12.6, 16.8, 11.4, 12, 11.9, 8.1, 6, 10.2, 13.4, 11.1, 9.3, 11.4, 7.8, 12.5, 11.5, 7.9, 8.1, 10.2, 11.3, 12.8, 12.6, 11.3, 12.4, 10.6, 9.3, 4.5, 13.4, 10.1, 10.4, 13.6, 14.6, 10.4, 19.3, 4.5, 11.5, 12, 11.4, 15.5, 10.9, 10.9, 1.1, 11.4, 11.3, 6.1, 5, 16.8, 15, 7.5, 16.6, 2.5, 12.4, 6.7, 12.8, 5, 10.2, 9.9, 13.4, 12.7, 14.8, 10, 13.9, 7, 18, 8.9, 8.9, 14.9, 2.8, 18, 10.1, 11.7, 10.9, 10.3, 5, 10, 9.8, 9.9, 12.2, 8.1, 11.8, 10.6, 11, 14.8, 11.1, 14.5, 11.8, 13.7, 11.1, 13.8, 11.4, 18.2, 6.1, -3.9, 12.7, 10.2, 9.5, 9.6, 17, 10.4, 8.8, 11.1, 10.1, 12.7, 16.4, 14.3, 9, 14.3, 9.3, 11.6, 11.5, 10.6, 13.4, 10.8, 13.2, 13.7, 9.9, 18.2, 13.1, 8.5, 12.2, 10.8, 10.3, 11.2, 6.4, 11.2, 4.9, 10.4, 3.1, 19.4, 8.4, 14, 10.9, 11.6, 8.1, 12.8, 11.6, 9.5, 17.8, 9.6, 13, 8.5, 8.7, 12.9, 13.5, 11.9, 16.2, 13.9, 10.2, 12.2, 18.2, 13, 12.4, 6, 10.6, 3.2, 14.6, 10.1, 7.3, 10.9, 10.6, 15, 9.1, 10.8, 14.5, 10.8, 16.1, 11.7, 9.3, 9.3, 8.8, 7, 13.9, 10, 10.2, 13.8, 12.6, 7.8, 14, -4, 17.1, 12, 11.5, 12.6, 8.5, 6.5, 15.1, 13.7, 9.2, 11, 12.8, 10.7, 10.5, 10.7, 9.7, 8.3, 15.6, 17.6, 15.4, 8.6, 9.4, 10.6, 11.8, 12.6, 11.2, 15.4, 9.5, 10.8, 10.4, 14.8, 9.8, 8.3, 7.8, 11.1, 3.7, 18.2, 13.7, 14.7, 8.6, 10.3, 12.1, 13, 13.3, 9.7, 10.8, 13.3, 8.9, 9.2, 3.8, 10.1, 10.5, -0.3, 5.4, 14.5, 12.3, 14.7, 8.9, 13.2, 16.5, 11.2, 12.6, 12.1, 14.6, 9, 13.9, 8, 10.7, 10.8, 11.5, 6.7, 9.8, 8.6, 8.9, 9.3, 8.3, 10.3, 13.8, 13.4, 10.9, 17.9, 10.5, 9.4, 16.9, 18.5, 14, 16.9, 13.9, 10.4, 12.5, 13.3, 17.7, 13.4, 10.6, 10.5, 15.7, 8.9, 11.8, 9.5, 12, 6.6, 11.1, 9.6, 9.3, 8.9, 13.9, 15.3, 17.4, 6.1, 10.5, 14.3, 10.3, 8.5, 8, 14.1, 8.1, 11.6, 10.7, 7.1, 12.1, 11.3, 17.9, 12.8, 12.6, 11.4, 3.4, 8.9, 10.9, 12.5, 12.4, 14.1, 10.8, 11.6, 12.1, 8.1, 7.1, 11.6, 5.2, 15, 10.6, 10.5, 4.7, 9.8, 12.7, 3.9, 13.8, 10.5, 11.7, 10.6, 11.3, 9.8, 10.1, 13.2, 11.9, 16.5, 9.2, 12.3, 7.8, 9.6, 11, 17.9, 7.3, 9.7, 8, 12.8, 15.8, 10.8, 15.7, 13.7, 10.6, 8.2, 10, 11.2, 12.8, 10.6, 10.7, 11.7, 12, 10.8, 15.6, 5.3, 13.6, 20.7, 11.6, 6.6, 12, 2.9, 11.3, 14.4, 10.3, 7.9, 14.8, 11.5, 15, 15.5, 9, 13.5, 10.5, 8.7, 10, 15.2, 11.3, 18, 11.7, -3.2, 12.8, 13.7, 11.6, 10, 9.9, 10.9, 12.6, 9.8, 10.8, 11.9, 4.6, 9.6, 13.4, 13.6, 11.3, 10.6, 17.9, 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28.635801}, + ordinarykriging.Point{104.241461, 28.660831}, + ordinarykriging.Point{104.252645, 28.660674}, + ordinarykriging.Point{104.269638, 28.635173}, + ordinarykriging.Point{104.296428, 28.634388}, + ordinarykriging.Point{104.314895, 28.615631}, + ordinarykriging.Point{104.343939, 28.64098}, + ordinarykriging.Point{104.37411, 28.649297}, + ordinarykriging.Point{104.404888, 28.640666}, + ordinarykriging.Point{104.425262, 28.626697}, + ordinarykriging.Point{104.417286, 28.598047}, + ordinarykriging.Point{104.387721, 28.598911}, + ordinarykriging.Point{104.368388, 28.585957}, + ordinarykriging.Point{104.35677, 28.555726}, + ordinarykriging.Point{104.330934, 28.559731}, + ordinarykriging.Point{104.323478, 28.541196}, + ordinarykriging.Point{104.287758, 28.532556}, + ordinarykriging.Point{104.262009, 28.536954}, + ordinarykriging.Point{104.248311, 28.528392}, + ordinarykriging.Point{104.248657, 28.509616}, + ordinarykriging.Point{104.266691, 28.502073}, + ordinarykriging.Point{104.261142, 28.482585}, + ordinarykriging.Point{104.269812, 28.468359}, + ordinarykriging.Point{104.258368, 28.453188}, + ordinarykriging.Point{104.267644, 28.420481}, + ordinarykriging.Point{104.2549, 28.410101}, + ordinarykriging.Point{104.278395, 28.346617}, + ordinarykriging.Point{104.30189, 28.328517}, + ordinarykriging.Point{104.290012, 28.314743}, + ordinarykriging.Point{104.313941, 28.306635}, + ordinarykriging.Point{104.340991, 28.332688}, + ordinarykriging.Point{104.358244, 28.338905}, + ordinarykriging.Point{104.384774, 28.330091}, + ordinarykriging.Point{104.393617, 28.289945}, + ordinarykriging.Point{104.408269, 28.269867}, + ordinarykriging.Point{104.447283, 28.271205}, + ordinarykriging.Point{104.444075, 28.259235}, + ordinarykriging.Point{104.460808, 28.24435}, + ordinarykriging.Point{104.435839, 28.209293}, + ordinarykriging.Point{104.402287, 28.202832}, + ordinarykriging.Point{104.406362, 28.173358}, + ordinarykriging.Point{104.444682, 28.162087}, + ordinarykriging.Point{104.451011, 28.116358}, + ordinarykriging.Point{104.433758, 28.113913}, + ordinarykriging.Point{104.421447, 28.097193}, + ordinarykriging.Point{104.40064, 28.091514}, + ordinarykriging.Point{104.398125, 28.068795}, + ordinarykriging.Point{104.376451, 28.052304}, + ordinarykriging.Point{104.341425, 28.057907}, + ordinarykriging.Point{104.304058, 28.050726}, + ordinarykriging.Point{104.298769, 28.043861}, + ordinarykriging.Point{104.326599, 28.025473}, + ordinarykriging.Point{104.356163, 28.018448}, + ordinarykriging.Point{104.378792, 27.993739}, + ordinarykriging.Point{104.383473, 27.968709}, + ordinarykriging.Point{104.40116, 27.952283}, + ordinarykriging.Point{104.451965, 27.926216}, + ordinarykriging.Point{104.468177, 27.907413}, + ordinarykriging.Point{104.496181, 27.896903}, + ordinarykriging.Point{104.509533, 27.8777}, + ordinarykriging.Point{104.526699, 27.889475}, + ordinarykriging.Point{104.558344, 27.867978}, + ordinarykriging.Point{104.557997, 27.852643}, + ordinarykriging.Point{104.580885, 27.842049}, + ordinarykriging.Point{104.607935, 27.858176}, + ordinarykriging.Point{104.633598, 27.850903}, + ordinarykriging.Point{104.679114, 27.882284}, + ordinarykriging.Point{104.743705, 27.90204}, + ordinarykriging.Point{104.76668, 27.884733}, + ordinarykriging.Point{104.79529, 27.900538}, + ordinarykriging.Point{104.858407, 27.902435}, + ordinarykriging.Point{104.887017, 27.913022}, + ordinarykriging.Point{104.894733, 27.934906}, + ordinarykriging.Point{104.921089, 27.941699}, + ordinarykriging.Point{104.903056, 27.960417}, + ordinarykriging.Point{104.929239, 27.984976}, + ordinarykriging.Point{104.947099, 27.980554}, + ordinarykriging.Point{104.946926, 27.994845}, + ordinarykriging.Point{104.975016, 28.019869}, + ordinarykriging.Point{104.976316, 28.060116}, + ordinarykriging.Point{105.011082, 28.066743}, + ordinarykriging.Point{105.059113, 28.09814}, + ordinarykriging.Point{105.078274, 28.08331}, 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ordinarykriging.Point{105.292939, 27.771267}, + ordinarykriging.Point{105.28791, 27.742387}, + ordinarykriging.Point{105.290511, 27.71247}, + ordinarykriging.Point{105.305683, 27.707879}, + ordinarykriging.Point{105.301348, 27.682783}, + ordinarykriging.Point{105.309845, 27.654989}, + ordinarykriging.Point{105.295019, 27.632891}, + ordinarykriging.Point{105.304296, 27.611897}, + ordinarykriging.Point{105.257912, 27.583688}, + ordinarykriging.Point{105.234764, 27.540172}, + ordinarykriging.Point{105.246728, 27.545167}, + ordinarykriging.Point{105.260167, 27.519637}, + ordinarykriging.Point{105.248029, 27.494657}, + ordinarykriging.Point{105.235891, 27.490532}, + ordinarykriging.Point{105.239012, 27.469829}, + ordinarykriging.Point{105.226094, 27.441108}, + ordinarykriging.Point{105.23277, 27.436346}, + ordinarykriging.Point{105.213263, 27.401107}, + ordinarykriging.Point{105.182658, 27.367604}, + ordinarykriging.Point{105.184739, 27.392455}, + ordinarykriging.Point{105.167226, 27.408807}, + ordinarykriging.Point{105.150927, 27.404997}, + ordinarykriging.Point{105.121449, 27.41849}, + ordinarykriging.Point{105.097174, 27.411903}, + ordinarykriging.Point{105.070384, 27.419046}, + ordinarykriging.Point{105.031456, 27.400234}, + ordinarykriging.Point{105.012123, 27.380229}, + ordinarykriging.Point{104.943804, 27.346639}, + ordinarykriging.Point{104.913547, 27.327101}, + ordinarykriging.Point{104.904097, 27.306049}, + ordinarykriging.Point{104.871238, 27.290873}, + ordinarykriging.Point{104.850517, 27.304301}, + ordinarykriging.Point{104.856499, 27.332581}, + ordinarykriging.Point{104.826068, 27.352357}, + ordinarykriging.Point{104.808989, 27.35474}, + ordinarykriging.Point{104.789135, 27.321064}, + ordinarykriging.Point{104.771015, 27.317409}, + ordinarykriging.Point{104.754369, 27.345369}, + ordinarykriging.Point{104.735642, 27.334647}, + ordinarykriging.Point{104.722637, 27.34243}, + ordinarykriging.Point{104.686137, 27.334805}, + 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27.336394}, + ordinarykriging.Point{104.259928, 27.308353}, + ordinarykriging.Point{104.250391, 27.291509}, + ordinarykriging.Point{104.210857, 27.29723}, + ordinarykriging.Point{104.21918, 27.279828}, + ordinarykriging.Point{104.190483, 27.287695}, + ordinarykriging.Point{104.174184, 27.263059}, + ordinarykriging.Point{104.131528, 27.306605}, + ordinarykriging.Point{104.134216, 27.322335}, + ordinarykriging.Point{104.113841, 27.337982}, + ordinarykriging.Point{104.084364, 27.330993}, + ordinarykriging.Point{104.057834, 27.355613}, + ordinarykriging.Point{104.029831, 27.368001}, + ordinarykriging.Point{104.01752, 27.384516}, + ordinarykriging.Point{104.015266, 27.429284}, + ordinarykriging.Point{103.992637, 27.419681}, + ordinarykriging.Point{103.956484, 27.425395}, + ordinarykriging.Point{103.932469, 27.443964}, + ordinarykriging.Point{103.92588, 27.413887}, + ordinarykriging.Point{103.904899, 27.384595}, + ordinarykriging.Point{103.903338, 27.349737}, + ordinarykriging.Point{103.885738, 27.330755}, + ordinarykriging.Point{103.874034, 27.330357}, + ordinarykriging.Point{103.865451, 27.281735}, + ordinarykriging.Point{103.84551, 27.287536}, + ordinarykriging.Point{103.824876, 27.264172}, + ordinarykriging.Point{103.802334, 27.267272}, + ordinarykriging.Point{103.801381, 27.250739}, + ordinarykriging.Point{103.764534, 27.212022}, + ordinarykriging.Point{103.749622, 27.211307}, + ordinarykriging.Point{103.696216, 27.12667}, + ordinarykriging.Point{103.674715, 27.131126}, + ordinarykriging.Point{103.624516, 27.112186}, + ordinarykriging.Point{103.620441, 27.096745}, + ordinarykriging.Point{103.6533, 27.092606}, + ordinarykriging.Point{103.659802, 27.065778}, + ordinarykriging.Point{103.617927, 27.07979}, + ordinarykriging.Point{103.601454, 27.062195}, + ordinarykriging.Point{103.623649, 27.035359}, + ordinarykriging.Point{103.628158, 27.016084}, + ordinarykriging.Point{103.614373, 27.00541}, + }} + polygon := ordinarykriging.PolygonGeometry{Type: "", Coordinates: coordinates} + + //go func() { + // gridMatrices := RunOrdinaryKriging(values, lons, lats, model, 0, 100, polygon.Coordinates) + // done <- gridMatrices + //}() + + //gridMatrices := <-done + + //<-done + + OrdinaryKriging(values, lons, lats, model, 0, 100, 0.01, polygon.Coordinates) + + //gridBuffer, err := json.Marshal(gridMatrices) + //if err != nil { + // log.Fatal(err) + //} + + return 1 +} + +func OrdinaryKriging(values, lons, lats []float64, model string, sigma2, alpha, width float64, polygon ordinarykriging.PolygonCoordinates) *ordinarykriging.GridMatrices { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lons, lats) + _ = ordinaryKriging.Train(ordinarykriging.ModelType(model), sigma2, alpha) + return ordinaryKriging.Grid(polygon, width) +} + +func OrdinaryKrigingTrain(values, lons, lats []float64, model string, sigma2 float64, alpha float64) *ordinarykriging.Variogram { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lons, lats) + variogram := ordinaryKriging.Train(ordinarykriging.ModelType(model), sigma2, alpha) + return variogram +} diff --git a/examples/wasm/main.go b/examples/wasm/main.go index fdcbca9..bbc5874 100644 --- a/examples/wasm/main.go +++ b/examples/wasm/main.go @@ -7,19 +7,20 @@ import ( "syscall/js" - "github.com/liuvigongzuoshi/go-kriging/ordinary" + "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" ) +// GOOS=js GOARCH=wasm go build -o kriging.wasm + func main() { - fmt.Println("Instantiate, kriging WebAssembly!") + fmt.Println("Instantiate, kriging WebAssembly! v0.0.6") done := make(chan int, 0) - js.Global().Set("RunOrdinaryKriging", js.FuncOf(RunOrdinaryKrigingFunc)) - js.Global().Set("RunOrdinaryKrigingTrain", js.FuncOf(RunOrdinaryKrigingTrainFunc)) + js.Global().Set("OrdinaryKriging", js.FuncOf(OrdinaryKrigingFunc)) + js.Global().Set("OrdinaryKrigingTrain", js.FuncOf(OrdinaryKrigingTrainFunc)) <-done } -func RunOrdinaryKrigingFunc(this js.Value, args []js.Value) interface{} { - done := make(chan *ordinary.GridMatrices, 1) +func OrdinaryKrigingFunc(this js.Value, args []js.Value) interface{} { values := make([]float64, args[0].Length()) for i := 0; i < len(values); i++ { values[i] = args[0].Index(i).Float() @@ -35,19 +36,15 @@ func RunOrdinaryKrigingFunc(this js.Value, args []js.Value) interface{} { model := args[3].String() sigma2 := args[4].Float() alpha := args[5].Float() + width := args[6].Float() - geoJsonString := args[6].String() + geoJsonString := args[7].String() polygon, err := readPolygonBytes([]byte(geoJsonString)) if err != nil { log.Fatal(err) } - go func() { - gridMatrices := RunOrdinaryKriging(values, lons, lats, model, sigma2, alpha, polygon) - done <- gridMatrices - }() - - gridMatrices := <-done + gridMatrices := RunOrdinaryKriging(values, lons, lats, model, sigma2, alpha, width, polygon) gridBuffer, err := json.Marshal(gridMatrices) if err != nil { @@ -59,8 +56,7 @@ func RunOrdinaryKrigingFunc(this js.Value, args []js.Value) interface{} { return string(gridBuffer) } -func RunOrdinaryKrigingTrainFunc(this js.Value, args []js.Value) interface{} { - //done := make(chan *ordinary.Variogram, 1) +func OrdinaryKrigingTrainFunc(this js.Value, args []js.Value) interface{} { values := make([]float64, args[0].Length()) for i := 0; i < len(values); i++ { values[i] = args[0].Index(i).Float() @@ -77,13 +73,6 @@ func RunOrdinaryKrigingTrainFunc(this js.Value, args []js.Value) interface{} { sigma2 := args[4].Float() alpha := args[5].Float() - //go func() { - // variogram := RunOrdinaryKrigingTrain(values, lons, lats, model, sigma2, alpha) - // done <- variogram - //}() - // - //variogram := <-done - variogram := RunOrdinaryKrigingTrain(values, lons, lats, model, sigma2, alpha) variogramBuffer, err := json.Marshal(variogram) if err != nil { @@ -94,20 +83,20 @@ func RunOrdinaryKrigingTrainFunc(this js.Value, args []js.Value) interface{} { return string(variogramBuffer) } -func RunOrdinaryKrigingTrain(values, lons, lats []float64, model string, sigma2 float64, alpha float64) *ordinary.Variogram { - ordinaryKriging := ordinary.NewOrdinary(values, lons, lats) - variogram := ordinaryKriging.Train(ordinary.ModelType(model), sigma2, alpha) +func RunOrdinaryKrigingTrain(values, lons, lats []float64, model string, sigma2 float64, alpha float64) *ordinarykriging.Variogram { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lons, lats) + variogram := ordinaryKriging.Train(ordinarykriging.ModelType(model), sigma2, alpha) return variogram } -func RunOrdinaryKriging(values, lons, lats []float64, model string, sigma2 float64, alpha float64, polygon ordinary.PolygonCoordinates) *ordinary.GridMatrices { - ordinaryKriging := ordinary.NewOrdinary(values, lons, lats) - _ = ordinaryKriging.Train(ordinary.ModelType(model), sigma2, alpha) - return ordinaryKriging.Grid(polygon, 0.01) +func RunOrdinaryKriging(values, lons, lats []float64, model string, sigma2, alpha, width float64, polygon ordinarykriging.PolygonCoordinates) *ordinarykriging.GridMatrices { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lons, lats) + _ = ordinaryKriging.Train(ordinarykriging.ModelType(model), sigma2, alpha) + return ordinaryKriging.Grid(polygon, width) } -func readPolygonBytes(content []byte) (ordinary.PolygonCoordinates, error) { - var polygonGeometry ordinary.PolygonGeometry +func readPolygonBytes(content []byte) (ordinarykriging.PolygonCoordinates, error) { + var polygonGeometry ordinarykriging.PolygonGeometry err := json.Unmarshal(content, &polygonGeometry) if err != nil { log.Fatalf("invalid json: %v", err) @@ -116,3 +105,1809 @@ func readPolygonBytes(content []byte) (ordinary.PolygonCoordinates, error) { return polygonGeometry.Coordinates, nil } + +func OrdinaryKrigingFuncWithData(this js.Value, args []js.Value) interface{} { + values := []float64{9.6, 5.3, 10.2, 5.4, 12.8, 7.5, 10.5, 18.7, 9.4, 12.4, 13, 10.8, 12, 13.2, 17.5, 14.1, 12.9, 10, 13.1, 10.7, 5.7, 10.4, 8, 10.3, 11, 11.8, 4.7, 11.7, 15.8, 5.3, 10.6, 16.4, 12.9, 12.2, 6.4, 10.6, 12.3, 11.2, 8.9, 17.5, 13.2, 10.7, 10.4, 12.6, 8.1, 6.7, 13, 14.6, 8.1, 8.4, 9.6, 8.5, 5.7, 11.4, 15.8, 10.9, 8, 14.7, 15.5, 11.7, 15.7, 9.9, 12.2, 17.9, 9.5, 16.6, 10.1, 10.1, 12.3, 15.3, 11.3, 14.5, 5.5, 15.4, 10.7, 18.9, 15.5, 13.7, 11.9, 16.3, 14.7, 14.8, 15.1, 20.4, 11.3, 12.1, 9.7, 13.1, 3.6, 11.9, 5.6, 14.4, 12, 13.1, 8.9, 6.7, 9.8, 11.7, 12.1, 15.4, 8, 12.3, 14.2, 13.4, 9.4, 0.6, 13.2, 11.6, 15.3, 12, 15.5, 8.9, 18.9, 13.3, 3.8, 12.5, 10.8, 15.5, 9, 12.8, 12.7, 11.3, 11.8, 12.2, 11.2, 12.2, 19.6, 10.9, 16.1, 9.5, 18.9, 10.9, 13, 13.6, 11.4, 17.5, 12, 13.7, 10.1, 17, 9, 10.9, 12.4, 11.7, 4.9, 12.9, 5.6, 8.6, 8.4, 9.4, 6.5, 9.7, 5.5, 12.6, 13.2, 13.6, 6.2, 9.9, 12, 6.6, 8.9, 18.5, 10.8, 14.6, 8.1, 10.4, 15.6, 9.5, 9.2, 15.6, 13.7, 11.3, 13.4, 11.8, 9.8, 14.5, 9.6, 10.4, 13.3, 9.7, 12.8, 6.9, 7.3, 8.6, 18.4, 6.1, 20.5, 17.1, 11.8, 9.2, 9.9, 9.8, 5.6, 9.8, 19.8, 11.2, 13.1, 12.4, 9, 13, 8.9, 7.7, 14.9, 16.1, 9.9, 7.4, 11.6, 13.5, 2, 4.5, 15.7, 8.7, 9, 13.7, 14.6, 11, 13.3, 8.9, 17.9, 11.6, 15.8, 20.4, 14.8, 14, 10.9, 8.5, 10.5, 15.3, 10.9, 9.4, 13.1, 12.2, 10.3, 10.1, 19, 12, 11.2, 14.1, 11.2, 10.7, 9.4, 11.5, 8.3, 11.4, 6.7, 8.3, 12.7, 15, 17.3, 13.4, 13.8, 11.2, 13.2, 14.4, 10.8, 12.2, 14.7, 13.2, 9.7, 12.2, 12.6, 10.7, 10.3, 12.9, 7.2, 10.7, 13.6, 12.3, 16.6, 14.7, 16.6, 13.1, 8.5, 13.8, 13.4, 7.7, 12.8, 7, 8.5, 16.7, 11, 9.5, 12.2, 8.5, 11.9, 17.8, 11.9, 12, 10, 9.4, 18.3, 20.2, 13.9, 13.2, 10, 6.5, 10.8, 9.4, 8, 9.2, 10.4, 14.2, 10.3, 13.7, 15, 13.9, 3.9, 14, 11.5, 13.3, 12.5, 10.7, 10.8, 15.7, 11.9, 7.6, 9.9, 5.5, 11.2, 14.4, 11.4, 8, 13.8, 9.5, 8.8, 12, 10.5, 7.9, 10, 14.3, 15.1, 11.8, 13.9, 14.7, 10.6, 5, 16.1, 11.1, 10.9, 12.2, 13, 13.5, 11, 10, 8.1, 12.1, 10, 15.1, 13.6, 14.8, 15.3, 12.1, 16.6, 11.3, 14.2, 9.7, 12.1, 7.9, 15.3, 10.9, 15.4, 18.1, 12.3, 10.8, 14.2, 11.2, 19.6, 6, 13.1, 19.1, 10, 15.3, 11.2, 12.4, 12.8, 18.6, 11.7, 12.3, 13.5, 10.4, 11.5, 8.9, 9, 11.9, 11.8, 12.1, 15.1, 9.7, 4.4, 10.8, 12.6, 16.8, 11.4, 12, 11.9, 8.1, 6, 10.2, 13.4, 11.1, 9.3, 11.4, 7.8, 12.5, 11.5, 7.9, 8.1, 10.2, 11.3, 12.8, 12.6, 11.3, 12.4, 10.6, 9.3, 4.5, 13.4, 10.1, 10.4, 13.6, 14.6, 10.4, 19.3, 4.5, 11.5, 12, 11.4, 15.5, 10.9, 10.9, 1.1, 11.4, 11.3, 6.1, 5, 16.8, 15, 7.5, 16.6, 2.5, 12.4, 6.7, 12.8, 5, 10.2, 9.9, 13.4, 12.7, 14.8, 10, 13.9, 7, 18, 8.9, 8.9, 14.9, 2.8, 18, 10.1, 11.7, 10.9, 10.3, 5, 10, 9.8, 9.9, 12.2, 8.1, 11.8, 10.6, 11, 14.8, 11.1, 14.5, 11.8, 13.7, 11.1, 13.8, 11.4, 18.2, 6.1, -3.9, 12.7, 10.2, 9.5, 9.6, 17, 10.4, 8.8, 11.1, 10.1, 12.7, 16.4, 14.3, 9, 14.3, 9.3, 11.6, 11.5, 10.6, 13.4, 10.8, 13.2, 13.7, 9.9, 18.2, 13.1, 8.5, 12.2, 10.8, 10.3, 11.2, 6.4, 11.2, 4.9, 10.4, 3.1, 19.4, 8.4, 14, 10.9, 11.6, 8.1, 12.8, 11.6, 9.5, 17.8, 9.6, 13, 8.5, 8.7, 12.9, 13.5, 11.9, 16.2, 13.9, 10.2, 12.2, 18.2, 13, 12.4, 6, 10.6, 3.2, 14.6, 10.1, 7.3, 10.9, 10.6, 15, 9.1, 10.8, 14.5, 10.8, 16.1, 11.7, 9.3, 9.3, 8.8, 7, 13.9, 10, 10.2, 13.8, 12.6, 7.8, 14, -4, 17.1, 12, 11.5, 12.6, 8.5, 6.5, 15.1, 13.7, 9.2, 11, 12.8, 10.7, 10.5, 10.7, 9.7, 8.3, 15.6, 17.6, 15.4, 8.6, 9.4, 10.6, 11.8, 12.6, 11.2, 15.4, 9.5, 10.8, 10.4, 14.8, 9.8, 8.3, 7.8, 11.1, 3.7, 18.2, 13.7, 14.7, 8.6, 10.3, 12.1, 13, 13.3, 9.7, 10.8, 13.3, 8.9, 9.2, 3.8, 10.1, 10.5, -0.3, 5.4, 14.5, 12.3, 14.7, 8.9, 13.2, 16.5, 11.2, 12.6, 12.1, 14.6, 9, 13.9, 8, 10.7, 10.8, 11.5, 6.7, 9.8, 8.6, 8.9, 9.3, 8.3, 10.3, 13.8, 13.4, 10.9, 17.9, 10.5, 9.4, 16.9, 18.5, 14, 16.9, 13.9, 10.4, 12.5, 13.3, 17.7, 13.4, 10.6, 10.5, 15.7, 8.9, 11.8, 9.5, 12, 6.6, 11.1, 9.6, 9.3, 8.9, 13.9, 15.3, 17.4, 6.1, 10.5, 14.3, 10.3, 8.5, 8, 14.1, 8.1, 11.6, 10.7, 7.1, 12.1, 11.3, 17.9, 12.8, 12.6, 11.4, 3.4, 8.9, 10.9, 12.5, 12.4, 14.1, 10.8, 11.6, 12.1, 8.1, 7.1, 11.6, 5.2, 15, 10.6, 10.5, 4.7, 9.8, 12.7, 3.9, 13.8, 10.5, 11.7, 10.6, 11.3, 9.8, 10.1, 13.2, 11.9, 16.5, 9.2, 12.3, 7.8, 9.6, 11, 17.9, 7.3, 9.7, 8, 12.8, 15.8, 10.8, 15.7, 13.7, 10.6, 8.2, 10, 11.2, 12.8, 10.6, 10.7, 11.7, 12, 10.8, 15.6, 5.3, 13.6, 20.7, 11.6, 6.6, 12, 2.9, 11.3, 14.4, 10.3, 7.9, 14.8, 11.5, 15, 15.5, 9, 13.5, 10.5, 8.7, 10, 15.2, 11.3, 18, 11.7, -3.2, 12.8, 13.7, 11.6, 10, 9.9, 10.9, 12.6, 9.8, 10.8, 11.9, 4.6, 9.6, 13.4, 13.6, 11.3, 10.6, 17.9, 7.9, 14.7, 12, 13.5, 15.2, 8.5, 11.3, 15.6, 13.1, 14.5, 11, 14.7, 10, 6.4, 8.9, 13.1, 18.6, 13.6, 12.1, 3.9, 4.2, 12.9, 9.6, 11.9, 11.3, 15.1, 14.8, 20.6, 13.6, 9.2, 12, 12.5, 15.2, 7.8, 16.3, 11.6, 10.1, 11.7, 10.6, 13.6, 9.7, 4.3, 14.3, 12.6, 10.3, 10.7, 7.6, 7.6, 15.1, 14.7, 11.5, 15.7, 17.1, 5.2, 6.1, 15.1, 10.6, 10.6, 16.6, 11, 15.5, 7.7, 13.8, 7.8, 13.6, 15.2, 13.3, 3.9, 9.7, 16.2, 13.6, 13.1, 10, 11.3, 14.3, 11.4, 15.5, 4.4, 10.8, 14.1, 3.9, 7.9, 14.5, 8.3, 12.6, 13.4, 10.4, 12.3, 9.7, 8.9, 9.4, 13.6, 7.3, 9.9, 17.1, 14.6, 6.9, 11.3, 3.4, 9, 14.9, 10.7, 10.3, 11.9, 0.5, 13.2, 9.1, 5.9, 8.4, 15.5, 7.5, 14.4, 2.5, 13.5, 14.7, 21.2, 14.4, 11.5, 11.7, 17.3, 11.3, 9.5, 12.5, 12.1, 12.8, 9.9, 11.3, 10, 15.1, 19.3, 7.5, 9.3, 12.8, 14.8, 8.4, 12.2, 15.5, 7.9, 14, 12.6, 8.7, 13.1, 14.7, 11.5, 16.9, 13.4, 12.7, 10.5, 16.5, 13.2, 11.8, 5.8, 7, 14.3, 12.4, 11.9, 16, 11.3, 16.7, 13, 13.2, 10.7, 9.5, 17.6, 7.6, 20.2, 7.7, 9.9, 8.5, 8, 5.4, 11.1, 11.2, 19.6, 13.6, 13.2, 14.8, 11.5, 18.7, 11.7, 12.1, 12.3, 12.9, 13.7, 11, 14.4, 3.9, 14.4, 12, 14.5, 12.5, 8.7, 11.6, 13.7, 7, 11.1, 20.2, 13.1, 13.7, 15.2, 11, 10.2, 16, 14.2, 7.7, 15.4, 10.7, 6.8, 7.8, 13.6, 11.4, 14.5, 6.7, 8.3, 8.6, 12.7, 9.8, 0.8, 9, 12.1, 15.8, 10.7, 12.6, 6.4, 10, 9.5, 16.7, 12.5, 3, 3.9, 11.7, 15.1, 14.1, 15.5, 10.5, 9.4, 10.7, 14.7, 9.1, 7, 10.1, 13.1, 9.5, 8.8, 14.3, 9.5, 10.2, 7.6, 7.2, 11.6, 12.2, 9.9, 12.4, 20.8, 11.5, 12, 10.9, 10.1, 13.5, 9.9, 15.3, 9, 12, 12.5, 14.6, 10.8, 12.7, 14.3, 9.2, 6.2, 14.2, 14.4, 10.9, 9.4, 12.5, 12.9, 14.7, 11.4, 10.6, 15.1, 14.2, 11.5, 13.6, 10.1, 11.3, 11.7, 9.7, 11.3, 14.1, 13.4, 10.5, 14.2, 9.3, 11.7, 9, 12.4, 10.9, 6.6, 14.9, 20, 11.2, 12.7, 12.8, 9, 12.1, 13.5, 5.9, 8.5, 6.6, 11, 13.4, 8.7, 5.4, 12, 12.7, 9.4, 8.7, 3.7, 14.5, 15, 13.6, 13.3, 14.3, 8.7, 9, 12.8, 12.1, 11.7, 7.7, 10, 10, 7.4, 15.1, 17.1, 11.2, 16.4, 15.4, 15.1, 13.8, 6.4, 22.7, 18.4, 7.5, 13, 13, 15.9, 8, 15.1, 15.8, 14.9, 17.6, 9.7, 13.3, 15.2, 18.3, 12.5, 16.4, 10.4, 9.4, 13.2, 13.3, 14.4, 20.8, 10.5, 19.8, 15.5, 11.5, 12.6, 9.5, 12.2, 9, 10.6, 11.2, 10.3, 10.3, 7, 7.1, 9.5, 14.8, 11.1, 7.3, 14.6, 20, 12.5, 9.8, 9.4, 8, 20.1, 13.2, 14.5, 21.2, 10.9, 13.3, 7.8, 11.1, 9.7, 10.2, 10.6, 11.8, 17.4, 13.4, 13.1, 14.1, 11.7, 13.6, 13, 11.5, 11.4, 10.7, 12.5, 13, 11.7, 12.5, 13.7, 16, 14.9, 12.2, 11.3, 12.3, 13, 16, 14.4, 9.8, 13.7, 8.9, 13.7, 16.3, 12, 12.4, 14.7, 9.8, 10.1, 13.4, 5.6, 12.4, 9.8, 15.2, 10.9, 11.9, 13, 10.4, 17.8, 13.5, 13.2, 14.5, 6.7, 15.1, 10.6, 12.7, 6.9, 15, 18.9, 14.4, 7.9, 11, 14, 11.8, 7.6, 13.6, 10.5, 11.1, 14.6, 18.3, 5.4, 8, 13.7, 7.2, 13.5, 12.2, 9.9, 11, 10.3, 13.2, 15.7, 9.3, 15.2, 8.6, 9.3, 12.3, 8.2, 13.9, 7, 14.6, 17.5, 15.1, 16.7, 7.3, 14.9, 12.5, 16.5, 11.3, 16.3, 11.5, 18.5, 7.2, 8.4, 7.7, 8.5, 11.5, 9.9, 16.4, 10.7, 10.1, 9.1, 12.5, 14.4, 15.4, 4.6, 9.4, 14, 6.4, 0, 14.2, 9.9, 4.6, 16.4, 12.9, 10.8, 12.8, 12.7, 6.1, 13.6, 6.8, 7.8, 11.4, 7.7, 5.9, 10.1, 5.3, 10.4, 10.1, 5.7, 8.3, 11.2, 4.9, 8.8, 11.8, 13.3, 13.9, 11.6, 14.6, 11.7, -0.9, 13.8, 11.8, 13.4, 12.9, 12.6, 19, 13, 17.2, 11.5, 7.6, 8.7, 16.3, 7.5, 7.6, 12.2, 4.9, 15.4, 12.1, 14.1, 13.2, 4.5, 15, 14, 11.2, 8.8, 17.8, 4.2, 19.8, -1.8, 15.2, 4, 12.4, 9.7, 9.9, 13, -1.6, 13.7, 13.7, 11.9, 13.7, 13.4, 13, 11.4, 16.1, 13.3, 15.2, 14.9, 11.9, 5, 12.8, 4.1, 11.7, 11.6, 6, 9.7, 15.8, 11.1, 10.2, 11.3, 10.5, 16.8, 13.1, 8.7, 7.1, 12, 12.1, 12.7, 11.4, 17.3, 12.6, 15.6, 12.2, 15.7, 10.6, 13.2, 13.8, 7.8, 9.3, 5.9, 2.6, 15.4, 10.5, 11.5, 18.3, 11.4, 12.1, 12.8, 9.8, 5.4, 13.4, 13.1, 7.3, 7.8, 9.6, 2.3, 19.1, 10.2, 13.8, 16.2, 10.8, 7.9, 10.5, 10.1, 6.7, 8.9, 5.9, 9.1, 10.9, 12.6, 16.7, 9.8, 18.5, 13.1, 11.7, 6.2, 6.5, 3.7, 10.3, 15, 13.5, 10.6, 11.1, 6.3, 9.7, 13.3, 11.4, 12.3, 14.7, 8.1, 15.8, 6.8, 10, 8.2, 13.9, 12.2, 13.3, 10.5, 11.8, 13.1, 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27.889475}, + ordinarykriging.Point{104.558344, 27.867978}, + ordinarykriging.Point{104.557997, 27.852643}, + ordinarykriging.Point{104.580885, 27.842049}, + ordinarykriging.Point{104.607935, 27.858176}, + ordinarykriging.Point{104.633598, 27.850903}, + ordinarykriging.Point{104.679114, 27.882284}, + ordinarykriging.Point{104.743705, 27.90204}, + ordinarykriging.Point{104.76668, 27.884733}, + ordinarykriging.Point{104.79529, 27.900538}, + ordinarykriging.Point{104.858407, 27.902435}, + ordinarykriging.Point{104.887017, 27.913022}, + ordinarykriging.Point{104.894733, 27.934906}, + ordinarykriging.Point{104.921089, 27.941699}, + ordinarykriging.Point{104.903056, 27.960417}, + ordinarykriging.Point{104.929239, 27.984976}, + ordinarykriging.Point{104.947099, 27.980554}, + ordinarykriging.Point{104.946926, 27.994845}, + ordinarykriging.Point{104.975016, 28.019869}, + ordinarykriging.Point{104.976316, 28.060116}, + ordinarykriging.Point{105.011082, 28.066743}, + ordinarykriging.Point{105.059113, 28.09814}, + ordinarykriging.Point{105.078274, 28.08331}, + ordinarykriging.Point{105.108098, 28.081102}, + ordinarykriging.Point{105.144251, 28.066664}, + ordinarykriging.Point{105.166359, 28.07195}, + ordinarykriging.Point{105.185519, 28.056802}, + ordinarykriging.Point{105.183785, 28.04031}, + ordinarykriging.Point{105.167573, 28.023657}, + ordinarykriging.Point{105.184392, 27.996424}, + ordinarykriging.Point{105.215604, 27.990581}, + ordinarykriging.Point{105.248809, 28.008107}, + ordinarykriging.Point{105.27083, 27.995792}, + ordinarykriging.Point{105.26875, 27.98316}, + ordinarykriging.Point{105.283402, 27.959944}, + ordinarykriging.Point{105.280887, 27.929139}, + ordinarykriging.Point{105.264155, 27.9116}, + ordinarykriging.Point{105.248202, 27.912469}, + ordinarykriging.Point{105.232683, 27.892952}, + ordinarykriging.Point{105.250196, 27.844816}, + ordinarykriging.Point{105.24118, 27.830822}, + ordinarykriging.Point{105.274385, 27.817142}, + ordinarykriging.Point{105.31418, 27.819435}, + ordinarykriging.Point{105.273865, 27.795235}, + ordinarykriging.Point{105.292939, 27.771267}, + ordinarykriging.Point{105.28791, 27.742387}, + ordinarykriging.Point{105.290511, 27.71247}, + ordinarykriging.Point{105.305683, 27.707879}, + ordinarykriging.Point{105.301348, 27.682783}, + ordinarykriging.Point{105.309845, 27.654989}, + ordinarykriging.Point{105.295019, 27.632891}, + ordinarykriging.Point{105.304296, 27.611897}, + ordinarykriging.Point{105.257912, 27.583688}, + ordinarykriging.Point{105.234764, 27.540172}, + ordinarykriging.Point{105.246728, 27.545167}, + ordinarykriging.Point{105.260167, 27.519637}, + ordinarykriging.Point{105.248029, 27.494657}, + ordinarykriging.Point{105.235891, 27.490532}, + ordinarykriging.Point{105.239012, 27.469829}, + ordinarykriging.Point{105.226094, 27.441108}, + ordinarykriging.Point{105.23277, 27.436346}, + ordinarykriging.Point{105.213263, 27.401107}, + ordinarykriging.Point{105.182658, 27.367604}, + ordinarykriging.Point{105.184739, 27.392455}, + ordinarykriging.Point{105.167226, 27.408807}, + ordinarykriging.Point{105.150927, 27.404997}, + ordinarykriging.Point{105.121449, 27.41849}, + ordinarykriging.Point{105.097174, 27.411903}, + ordinarykriging.Point{105.070384, 27.419046}, + ordinarykriging.Point{105.031456, 27.400234}, + ordinarykriging.Point{105.012123, 27.380229}, + ordinarykriging.Point{104.943804, 27.346639}, + ordinarykriging.Point{104.913547, 27.327101}, + ordinarykriging.Point{104.904097, 27.306049}, + ordinarykriging.Point{104.871238, 27.290873}, + ordinarykriging.Point{104.850517, 27.304301}, + ordinarykriging.Point{104.856499, 27.332581}, + ordinarykriging.Point{104.826068, 27.352357}, + ordinarykriging.Point{104.808989, 27.35474}, + ordinarykriging.Point{104.789135, 27.321064}, + ordinarykriging.Point{104.771015, 27.317409}, + ordinarykriging.Point{104.754369, 27.345369}, + ordinarykriging.Point{104.735642, 27.334647}, + ordinarykriging.Point{104.722637, 27.34243}, + ordinarykriging.Point{104.686137, 27.334805}, + ordinarykriging.Point{104.680242, 27.319634}, + ordinarykriging.Point{104.630824, 27.317886}, + ordinarykriging.Point{104.611316, 27.307002}, + ordinarykriging.Point{104.594757, 27.311292}, + ordinarykriging.Point{104.570221, 27.331708}, + ordinarykriging.Point{104.539357, 27.329722}, + ordinarykriging.Point{104.507625, 27.387533}, + ordinarykriging.Point{104.517249, 27.400393}, + ordinarykriging.Point{104.490892, 27.401901}, + ordinarykriging.Point{104.497655, 27.411585}, + ordinarykriging.Point{104.467137, 27.414284}, + ordinarykriging.Point{104.416592, 27.435553}, + ordinarykriging.Point{104.410176, 27.457929}, + ordinarykriging.Point{104.353129, 27.466894}, + ordinarykriging.Point{104.332755, 27.444044}, + ordinarykriging.Point{104.342638, 27.436346}, + ordinarykriging.Point{104.322438, 27.407854}, + ordinarykriging.Point{104.308826, 27.407299}, + ordinarykriging.Point{104.295821, 27.374671}, + ordinarykriging.Point{104.270419, 27.360934}, + ordinarykriging.Point{104.247877, 27.336394}, + ordinarykriging.Point{104.259928, 27.308353}, + ordinarykriging.Point{104.250391, 27.291509}, + ordinarykriging.Point{104.210857, 27.29723}, + ordinarykriging.Point{104.21918, 27.279828}, + ordinarykriging.Point{104.190483, 27.287695}, + ordinarykriging.Point{104.174184, 27.263059}, + ordinarykriging.Point{104.131528, 27.306605}, + ordinarykriging.Point{104.134216, 27.322335}, + ordinarykriging.Point{104.113841, 27.337982}, + ordinarykriging.Point{104.084364, 27.330993}, + ordinarykriging.Point{104.057834, 27.355613}, + ordinarykriging.Point{104.029831, 27.368001}, + ordinarykriging.Point{104.01752, 27.384516}, + ordinarykriging.Point{104.015266, 27.429284}, + ordinarykriging.Point{103.992637, 27.419681}, + ordinarykriging.Point{103.956484, 27.425395}, + ordinarykriging.Point{103.932469, 27.443964}, + ordinarykriging.Point{103.92588, 27.413887}, + ordinarykriging.Point{103.904899, 27.384595}, + ordinarykriging.Point{103.903338, 27.349737}, + ordinarykriging.Point{103.885738, 27.330755}, + ordinarykriging.Point{103.874034, 27.330357}, + ordinarykriging.Point{103.865451, 27.281735}, + ordinarykriging.Point{103.84551, 27.287536}, + ordinarykriging.Point{103.824876, 27.264172}, + ordinarykriging.Point{103.802334, 27.267272}, + ordinarykriging.Point{103.801381, 27.250739}, + ordinarykriging.Point{103.764534, 27.212022}, + ordinarykriging.Point{103.749622, 27.211307}, + ordinarykriging.Point{103.696216, 27.12667}, + ordinarykriging.Point{103.674715, 27.131126}, + ordinarykriging.Point{103.624516, 27.112186}, + ordinarykriging.Point{103.620441, 27.096745}, + ordinarykriging.Point{103.6533, 27.092606}, + ordinarykriging.Point{103.659802, 27.065778}, + ordinarykriging.Point{103.617927, 27.07979}, + ordinarykriging.Point{103.601454, 27.062195}, + ordinarykriging.Point{103.623649, 27.035359}, + ordinarykriging.Point{103.628158, 27.016084}, + ordinarykriging.Point{103.614373, 27.00541}, + }} + polygon := ordinarykriging.PolygonGeometry{Type: "", Coordinates: coordinates} + + RunOrdinaryKriging(values, lons, lats, model, 0, 100, 0.01, polygon.Coordinates) + + //gridBuffer, err := json.Marshal(gridMatrices) + //if err != nil { + // log.Fatal(err) + //} + + //js.Global().Get("console").Call("log", "wasm geoJsonString: ", js.ValueOf(geoJsonString)) + //js.Global().Get("console").Call("log", "wasm gridMatrices: ", string(gridBuffer)) + return 1 +} diff --git a/go.mod b/go.mod index 8e84ab2..b1edce6 100644 --- a/go.mod +++ b/go.mod @@ -8,4 +8,5 @@ require ( github.com/json-iterator/go v1.1.10 github.com/spf13/cobra v1.1.1 golang.org/x/image v0.0.0-20190802002840-cff245a6509b + gonum.org/v1/gonum v0.8.2 ) diff --git a/go.sum b/go.sum index ed7a3ea..aab151d 100644 --- a/go.sum +++ b/go.sum @@ -14,6 +14,7 @@ dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7 github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU= github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo= github.com/OneOfOne/xxhash v1.2.2/go.mod h1:HSdplMjZKSmBqAxg5vPj2TmRDmfkzw+cTzAElWljhcU= +github.com/ajstarks/svgo v0.0.0-20180226025133-644b8db467af/go.mod h1:K08gAheRH3/J6wwsYMMT4xOr94bZjxIelGM0+d/wbFw= github.com/alecthomas/template v0.0.0-20160405071501-a0175ee3bccc/go.mod h1:LOuyumcjzFXgccqObfd/Ljyb9UuFJ6TxHnclSeseNhc= github.com/alecthomas/units v0.0.0-20151022065526-2efee857e7cf/go.mod h1:ybxpYRFXyAe+OPACYpWeL0wqObRcbAqCMya13uyzqw0= github.com/armon/circbuf v0.0.0-20150827004946-bbbad097214e/go.mod h1:3U/XgcO3hCbHZ8TKRvWD2dDTCfh9M9ya+I9JpbB7O8o= @@ -37,6 +38,7 @@ github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSs github.com/dgrijalva/jwt-go v3.2.0+incompatible/go.mod h1:E3ru+11k8xSBh+hMPgOLZmtrrCbhqsmaPHjLKYnJCaQ= github.com/dgryski/go-sip13 v0.0.0-20181026042036-e10d5fee7954/go.mod h1:vAd38F8PWV+bWy6jNmig1y/TA+kYO4g3RSRF0IAv0no= github.com/fatih/color v1.7.0/go.mod h1:Zm6kSWBoL9eyXnKyktHP6abPY2pDugNf5KwzbycvMj4= +github.com/fogleman/gg v1.2.1-0.20190220221249-0403632d5b90/go.mod h1:R/bRT+9gY/C5z7JzPU0zXsXHKM4/ayA+zqcVNZzPa1k= github.com/fogleman/gg v1.3.0 h1:/7zJX8F6AaYQc57WQCyN9cAIz+4bCJGO9B+dyW29am8= github.com/fogleman/gg v1.3.0/go.mod h1:R/bRT+9gY/C5z7JzPU0zXsXHKM4/ayA+zqcVNZzPa1k= github.com/fsnotify/fsnotify v1.4.7/go.mod h1:jwhsz4b93w/PPRr/qN1Yymfu8t87LnFCMoQvtojpjFo= @@ -103,6 +105,7 @@ github.com/json-iterator/go v1.1.10/go.mod h1:KdQUCv79m/52Kvf8AW2vK1V8akMuk1QjK/ github.com/jstemmer/go-junit-report v0.0.0-20190106144839-af01ea7f8024/go.mod h1:6v2b51hI/fHJwM22ozAgKL4VKDeJcHhJFhtBdhmNjmU= github.com/jtolds/gls v4.20.0+incompatible/go.mod h1:QJZ7F/aHp+rZTRtaJ1ow/lLfFfVYBRgL+9YlvaHOwJU= github.com/julienschmidt/httprouter v1.2.0/go.mod h1:SYymIcj16QtmaHHD7aYtjjsJG7VTCxuUUipMqKk8s4w= +github.com/jung-kurt/gofpdf v1.0.3-0.20190309125859-24315acbbda5/go.mod h1:7Id9E/uU8ce6rXgefFLlgrJj/GYY22cpxn+r32jIOes= github.com/kisielk/errcheck v1.1.0/go.mod h1:EZBBE59ingxPouuu3KfxchcWSUPOHkagtvWXihfKN4Q= github.com/kisielk/gotool v1.0.0/go.mod h1:XhKaO+MFFWcvkIS/tQcRk01m1F5IRFswLeQ+oQHNcck= github.com/konsorten/go-windows-terminal-sequences v1.0.1/go.mod h1:T0+1ngSBFLxvqU3pZ+m/2kptfBszLMUkC4ZK/EgS/cQ= @@ -188,11 +191,15 @@ golang.org/x/crypto v0.0.0-20181029021203-45a5f77698d3/go.mod h1:6SG95UA2DQfeDnf golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w= golang.org/x/crypto v0.0.0-20190510104115-cbcb75029529/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= golang.org/x/crypto v0.0.0-20190605123033-f99c8df09eb5/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= +golang.org/x/exp v0.0.0-20180321215751-8460e604b9de/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= +golang.org/x/exp v0.0.0-20180807140117-3d87b88a115f/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20190121172915-509febef88a4/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= +golang.org/x/exp v0.0.0-20190125153040-c74c464bbbf2/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20190306152737-a1d7652674e8/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20190510132918-efd6b22b2522/go.mod h1:ZjyILWgesfNpC6sMxTJOJm9Kp84zZh5NQWvqDGG3Qr8= golang.org/x/exp v0.0.0-20190829153037-c13cbed26979/go.mod h1:86+5VVa7VpoJ4kLfm080zCjGlMRFzhUhsZKEZO7MGek= golang.org/x/exp v0.0.0-20191030013958-a1ab85dbe136/go.mod h1:JXzH8nQsPlswgeRAPE3MuO9GYsAcnJvJ4vnMwN/5qkY= +golang.org/x/image v0.0.0-20180708004352-c73c2afc3b81/go.mod h1:ux5Hcp/YLpHSI86hEcLt0YII63i6oz57MZXIpbrjZUs= golang.org/x/image v0.0.0-20190227222117-0694c2d4d067/go.mod h1:kZ7UVZpmo3dzQBMxlp+ypCbDeSB+sBbTgSJuh5dn5js= golang.org/x/image v0.0.0-20190802002840-cff245a6509b h1:+qEpEAPhDZ1o0x3tHzZTQDArnOixOzGD9HUJfcg0mb4= golang.org/x/image v0.0.0-20190802002840-cff245a6509b/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0= @@ -248,8 +255,10 @@ golang.org/x/text v0.3.2/go.mod h1:bEr9sfX3Q8Zfm5fL9x+3itogRgK3+ptLWKqgva+5dAk= golang.org/x/time v0.0.0-20181108054448-85acf8d2951c/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ= golang.org/x/time v0.0.0-20190308202827-9d24e82272b4/go.mod h1:tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ= golang.org/x/tools v0.0.0-20180221164845-07fd8470d635/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= +golang.org/x/tools v0.0.0-20180525024113-a5b4c53f6e8b/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= golang.org/x/tools v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= golang.org/x/tools v0.0.0-20190114222345-bf090417da8b/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= +golang.org/x/tools v0.0.0-20190206041539-40960b6deb8e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= golang.org/x/tools v0.0.0-20190226205152-f727befe758c/go.mod h1:9Yl7xja0Znq3iFh3HoIrodX9oNMXvdceNzlUR8zjMvY= golang.org/x/tools v0.0.0-20190311212946-11955173bddd/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs= golang.org/x/tools v0.0.0-20190312151545-0bb0c0a6e846/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs= @@ -265,6 +274,11 @@ golang.org/x/tools v0.0.0-20190911174233-4f2ddba30aff/go.mod h1:b+2E5dAYhXwXZwtn golang.org/x/tools v0.0.0-20191012152004-8de300cfc20a/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo= golang.org/x/tools v0.0.0-20191112195655-aa38f8e97acc/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo= golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= +gonum.org/v1/gonum v0.0.0-20180816165407-929014505bf4/go.mod h1:Y+Yx5eoAFn32cQvJDxZx5Dpnq+c3wtXuadVZAcxbbBo= +gonum.org/v1/gonum v0.8.2 h1:CCXrcPKiGGotvnN6jfUsKk4rRqm7q09/YbKb5xCEvtM= +gonum.org/v1/gonum v0.8.2/go.mod h1:oe/vMfY3deqTw+1EZJhuvEW2iwGF1bW9wwu7XCu0+v0= +gonum.org/v1/netlib v0.0.0-20190313105609-8cb42192e0e0/go.mod h1:wa6Ws7BG/ESfp6dHfk7C6KdzKA7wR7u/rKwOGE66zvw= +gonum.org/v1/plot v0.0.0-20190515093506-e2840ee46a6b/go.mod h1:Wt8AAjI+ypCyYX3nZBvf6cAIx93T+c/OS2HFAYskSZc= google.golang.org/api v0.4.0/go.mod h1:8k5glujaEP+g9n7WNsDg8QP6cUVNI86fCNMcbazEtwE= google.golang.org/api v0.7.0/go.mod h1:WtwebWUNSVBH/HAw79HIFXZNqEvBhG+Ra+ax0hx3E3M= google.golang.org/api v0.8.0/go.mod h1:o4eAsZoiT+ibD93RtjEohWalFOjRDx6CVaqeizhEnKg= @@ -301,3 +315,4 @@ honnef.co/go/tools v0.0.0-20190106161140-3f1c8253044a/go.mod h1:rf3lG4BRIbNafJWh honnef.co/go/tools v0.0.0-20190418001031-e561f6794a2a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg= rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8= +rsc.io/pdf v0.1.1/go.mod h1:n8OzWcQ6Sp37PL01nO98y4iUCRdTGarVfzxY20ICaU4= diff --git a/ordinary/example_test.go b/ordinary/example_test.go deleted file mode 100644 index c117cb4..0000000 --- a/ordinary/example_test.go +++ /dev/null @@ -1,67 +0,0 @@ -package ordinary_test - -import ( - "fmt" - - "github.com/liuvigongzuoshi/go-kriging/ordinary" -) - -var ( - values = FloatList{45.986076009952846, 46.223032113384235, 52.821454425024626, 89.19253247046487, 31.062802427638776} - lats = FloatList{117.99598607600996, 117.99622303211338, 118.00282145442502, 118.03919253247047, 117.98106280242764} - lons = FloatList{31.995986076009952, 31.99622303211338, 32.002821454425025, 32.03919253247046, 31.981062802427637} -) - -type FloatList []float64 - -func (t FloatList) min() float64 { - min := float64(0) - for i := 0; i < len(t); i++ { - if min == 0 || min > t[i] { - min = t[i] - } - } - - return min -} - -func (t FloatList) max() float64 { - max := float64(0) - for i := 0; i < len(t); i++ { - if max < t[i] { - max = t[i] - } - } - - return max -} - -func Example_OrdinaryKriging_Exponential() { - ordinaryKriging := ordinary.NewOrdinary(values, lats, lons) - ordinaryKriging.Train(ordinary.Exponential, 0, 100) - contourRectangle := ordinaryKriging.Contour(200, 200) - fmt.Printf("%#v", contourRectangle.Contour[:10]) - // Output: - // []float64{31.062802427638875, 31.674435068380763, 32.278056119942775, 32.873804573541605, 33.461820447530116, 34.04224482718795, 34.615219901523936, 35.18088899653787, 35.73939660436959, 36.29088840795853} - -} - -func Example_OrdinaryKriging_Spherical() { - ordinaryKriging := ordinary.NewOrdinary(values, lats, lons) - ordinaryKriging.Train(ordinary.Spherical, 0, 100) - contourRectangle := ordinaryKriging.Contour(200, 200) - fmt.Printf("%#v", contourRectangle.Contour[:10]) - // Output: - // []float64{31.062802427638914, 31.355686136987902, 31.64907050717433, 31.94263698074654, 32.23631166433025, 32.5301127079549, 32.82405871070649, 33.11816872323253, 33.41246224930141, 33.70695924637675} - -} - -func Example_OrdinaryKriging_Gaussian() { - ordinaryKriging := ordinary.NewOrdinary(values, lats, lons) - ordinaryKriging.Train(ordinary.Gaussian, 0, 100) - contourRectangle := ordinaryKriging.Contour(200, 200) - fmt.Printf("%#v", contourRectangle.Contour[:10]) - // Output: - // []float64{31.062802429121923, 31.194182744748254, 31.328955440993354, 31.467084512481577, 31.60853363388739, 31.75326617591121, 31.90124522123483, 32.05243358038846, 32.206793807474796, 32.36428821590181} - -} diff --git a/ordinary/matrix.go b/ordinary/matrix.go deleted file mode 100644 index e5b7f7e..0000000 --- a/ordinary/matrix.go +++ /dev/null @@ -1,225 +0,0 @@ -package ordinary - -import "math" - -// krigingMatrixTranspose The matrix is reversed, and the horizontal matrix becomes the vertical matrix -// 矩阵颠倒，横向矩阵变成纵向矩阵 -func krigingMatrixTranspose(X []float64, n, m int) []float64 { - Z := make([]float64, m*n) - for i := 0; i < n; i++ { - for j := 0; j < m; j++ { - Z[j*n+i] = X[i*m+j] - } - } - - return Z -} - -// krigingMatrixMultiply naive matrix multiplication -// 矩阵相乘, 横向矩阵乘纵向矩阵 -func krigingMatrixMultiply(X, Y []float64, n, m, p int) []float64 { - Z := make([]float64, n*p) - for i := 0; i < n; i++ { - for j := 0; j < p; j++ { - Z[i*p+j] = 0 - for k := 0; k < m; k++ { - Z[i*p+j] += X[i*m+k] * Y[k*p+j] - } - } - } - return Z -} - -// krigingMatrixAdd -// 矩阵相加 -func krigingMatrixAdd(X, Y []float64, n, m int) []float64 { - Z := make([]float64, n*m) - for i := 0; i < n; i++ { - for j := 0; j < m; j++ { - Z[i*m+j] = X[i*m+j] + Y[i*m+j] - } - } - - return Z -} - -// krigingMatrixDiag matrix algebra -func krigingMatrixDiag(c float64, n int) []float64 { - Z := make([]float64, n*n) - for i := 0; i < n; i++ { - Z[i*n+i] = c - } - return Z -} - -// krigingMatrixChol cholesky decomposition -// Cholesky 分解 -func krigingMatrixChol(X []float64, n int) bool { - p := make([]float64, n) - - for i := 0; i < n; i++ { - p[i] = X[i*n+i] - } - - for i := 0; i < n; i++ { - for j := 0; j < i; j++ { - p[i] -= X[i*n+j] * X[i*n+j] - } - if p[i] <= 0 { - return false - } - p[i] = math.Sqrt(p[i]) - for j := i + 1; j < n; j++ { - for k := 0; k < i; k++ { - X[j*n+i] -= X[j*n+k] * X[i*n+k] - X[j*n+i] /= p[i] - } - } - } - - for i := 0; i < n; i++ { - X[i*n+i] = p[i] - } - return true -} - -// krigingMatrixChol2inv inversion of cholesky decomposition -// cholesky分解的求逆 -func krigingMatrixChol2inv(X []float64, n int) { - var i, j, k int - var sum float64 - - for i = 0; i < n; i++ { - X[i*n+i] = 1 / X[i*n+i] - for j = i + 1; j < n; j++ { - sum = 0 - for k = i; k < j; k++ { - sum -= X[j*n+k] * X[k*n+i] - } - X[j*n+i] = sum / X[j*n+j] - } - } - - for i = 0; i < n; i++ { - for j = i + 1; j < n; j++ { - X[i*n+j] = 0 - } - } - - for i = 0; i < n; i++ { - X[i*n+i] *= X[i*n+i] - for k = i + 1; k < n; k++ { - X[i*n+i] += X[k*n+i] * X[k*n+i] - } - - for j = i + 1; j < n; j++ { - for k = j; k < n; k++ { - X[i*n+j] += X[k*n+i] * X[k*n+j] - } - } - } - - for i = 0; i < n; i++ { - for j = 0; j < i; j++ { - X[i*n+j] = X[j*n+i] - } - } -} - -// krigingMatrixSolve inversion via gauss-jordan elimination -// 高斯-若尔当消元法 -func krigingMatrixSolve(X []float64, n int) bool { - var b = make([]float64, n*n) - var indexC = make([]int, n) - var indexR = make([]int, n) - var ipiV = make([]int, n) - var iCol, iRow, iRowXn, iColXn int - var dum, pivinv float64 - - for i := 0; i < n; i++ { - _iXn := i * n - for j := 0; j < n; j++ { - if i == j { - b[_iXn+j] = 1 - } else { - b[_iXn+j] = 0 - } - } - } - - for i := 0; i < n; i++ { - var big float64 = 0 - for j := 0; j < n; j++ { - if ipiV[j] != 1 { - _jXn := j * n - for k := 0; k < n; k++ { - if ipiV[k] == 0 { - absoluteValue := math.Abs(X[_jXn+k]) - if absoluteValue >= big { - big = absoluteValue - iRow = j - iCol = k - iRowXn = iRow * n - iColXn = iCol * n - } - } - } - } - } - - ipiV[iCol]++ - - if iRow != iCol { - for l := 0; l < n; l++ { - x := iRowXn + l - y := iColXn + l - X[x], X[y] = X[y], X[x] - b[x], b[y] = b[y], b[x] - } - } - indexR[i] = iRow - indexC[i] = iCol - - _iColXnAddiCol := iColXn + iCol - - if X[_iColXnAddiCol] == 0 { - return false - } // Singular - - pivinv = 1 / X[_iColXnAddiCol] - X[_iColXnAddiCol] = 1 - for l := 0; l < n; l++ { - _a := iColXn + l - X[_a] *= pivinv - b[_a] *= pivinv - } - - for ll := 0; ll < n; ll++ { - if ll != iCol { - _a := ll * n - _b := _a + iCol - dum = X[_b] - X[_b] = 0 - for l := 0; l < n; l++ { - _c := _a + l - _d := iColXn + l - X[_c] -= X[_d] * dum - b[_c] -= b[_d] * dum - } - } - } - } - - for l := n - 1; l >= 0; l-- { - if indexR[l] != indexC[l] { - for k := 0; k < n; k++ { - _kXn := k * n - _a := _kXn + indexR[l] - _b := _kXn + indexC[l] - X[_a], X[_b] = X[_b], X[_a] - } - } - } - - return true -} diff --git a/ordinary/ordinary_test.go b/ordinary/ordinary_test.go deleted file mode 100644 index 6ddb745..0000000 --- a/ordinary/ordinary_test.go +++ /dev/null @@ -1,75 +0,0 @@ -package ordinary_test - -import ( - "fmt" - "image/png" - "math/rand" - "os" - "path/filepath" - "testing" - "time" - - "github.com/liuvigongzuoshi/go-kriging/ordinary" -) - -const pngDirPath = "testdata" - -func randFloats(min, max float64, n int) []float64 { - s := rand.NewSource(time.Now().Unix()) - r := rand.New(s) - res := make([]float64, n) - for i := range res { - res[i] = min + r.Float64()*(max-min) - } - return res -} - -func generateData(count int) (FloatList, FloatList, FloatList) { - var values, lats, lons FloatList - values = append(values, randFloats(0, 100, count)...) - lats = append(lats, randFloats(117.95, 118.05, count)...) - lons = append(lons, randFloats(31.95, 32.05, count)...) - return values, lats, lons -} - -func TestGenerateData(t *testing.T) { - values, lats, lons := generateData(100) - fmt.Printf("values %v\n", values) - fmt.Printf("lats %v\n", lats) - fmt.Printf("lons %v\n", lons) -} - -func TestTrain(t *testing.T) { - values, lats, lons := generateData(100) - ordinaryKriging := ordinary.NewOrdinary(values, lats, lons) - ordinaryKriging.Train(ordinary.Exponential, 0, 100) -} - -func TestPredict(t *testing.T) { - values, lats, lons := generateData(100) - ordinaryKriging := ordinary.NewOrdinary(values, lats, lons) - ordinaryKriging.Train(ordinary.Exponential, 0, 100) - ordinaryKriging.Contour(200, 2000) -} - -func TestOrdinaryKriging(t *testing.T) { - values, lats, lons := generateData(100) - - ordinaryKriging := ordinary.NewOrdinary(values, lats, lons) - ordinaryKriging.Train(ordinary.Exponential, 0, 100) - - contourRectangle := ordinaryKriging.Contour(500, 500) - pngPath := fmt.Sprintf("%v/%v.png", pngDirPath, time.Now().Format("2006-01-02 15:04:05")) - img := ordinaryKriging.PlotPng(contourRectangle) - - err := os.MkdirAll(filepath.Dir(pngPath), os.ModePerm) - if err != nil { - return - } - file, err := os.Create(pngPath) - if err != nil { - return - } - defer file.Close() - png.Encode(file, img) -} diff --git a/ordinarykriging/example_test.go b/ordinarykriging/example_test.go new file mode 100644 index 0000000..8616d70 --- /dev/null +++ b/ordinarykriging/example_test.go @@ -0,0 +1,67 @@ +package ordinarykriging_test + +import ( + "fmt" + + "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" +) + +var ( + values = FloatList{45.986076009952846, 46.223032113384235, 52.821454425024626, 89.19253247046487, 31.062802427638776} + lats = FloatList{117.99598607600996, 117.99622303211338, 118.00282145442502, 118.03919253247047, 117.98106280242764} + lons = FloatList{31.995986076009952, 31.99622303211338, 32.002821454425025, 32.03919253247046, 31.981062802427637} +) + +type FloatList []float64 + +func (t FloatList) min() float64 { + min := float64(0) + for i := 0; i < len(t); i++ { + if min == 0 || min > t[i] { + min = t[i] + } + } + + return min +} + +func (t FloatList) max() float64 { + max := float64(0) + for i := 0; i < len(t); i++ { + if max < t[i] { + max = t[i] + } + } + + return max +} + +func ExampleVariogram_Contour_Exponential() { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lats, lons) + ordinaryKriging.Train(ordinarykriging.Exponential, 0, 100) + contourRectangle := ordinaryKriging.Contour(200, 200) + fmt.Printf("%#v", contourRectangle.Contour[:10]) + // Output: + // []float64{31.062802427639, 31.67443506838088, 32.27805611994289, 32.87380457354172, 33.461820447530236, 34.042244827188064, 34.61521990152406, 35.18088899653797, 35.73939660436969, 36.29088840795865} + +} + +func ExampleVariogram_Contour_Spherical() { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lats, lons) + ordinaryKriging.Train(ordinarykriging.Spherical, 0, 100) + contourRectangle := ordinaryKriging.Contour(200, 200) + fmt.Printf("%#v", contourRectangle.Contour[:10]) + // Output: + // []float64{31.062802427637955, 31.35568613698695, 31.649070507173384, 31.942636980745615, 32.23631166432933, 32.53011270795399, 32.82405871070559, 33.11816872323164, 33.41246224930053, 33.70695924637588} + +} + +func ExampleVariogram_Contour_Gaussian() { + ordinaryKriging := ordinarykriging.NewOrdinary(values, lats, lons) + ordinaryKriging.Train(ordinarykriging.Gaussian, 0, 100) + contourRectangle := ordinaryKriging.Contour(200, 200) + fmt.Printf("%#v", contourRectangle.Contour[:10]) + // Output: + // []float64{31.062802438363697, 31.19418275387546, 31.32895545000455, 31.467084521380848, 31.60853364267539, 31.753266184588494, 31.901245229805934, 32.052433588854164, 32.206793815838, 32.36428822416533} + +} diff --git a/ordinary/math.go b/ordinarykriging/math.go similarity index 96% rename from ordinary/math.go rename to ordinarykriging/math.go index 7e48d06..ad27136 100644 --- a/ordinary/math.go +++ b/ordinarykriging/math.go @@ -1,4 +1,4 @@ -package ordinary +package ordinarykriging import "math" diff --git a/ordinarykriging/matrix-inverse.go b/ordinarykriging/matrix-inverse.go new file mode 100644 index 0000000..63963d4 --- /dev/null +++ b/ordinarykriging/matrix-inverse.go @@ -0,0 +1,235 @@ +package ordinarykriging + +import ( + "gonum.org/v1/gonum/mat" + "math" +) + +// gaussJordanInversion inversion via gauss-jordan elimination +// 矩阵求逆 高斯-若尔当消元法 +func gaussJordanInversion(X []float64, n int) bool { + // m 是列数, n 是行数 + var m = n + var b = make([]float64, n*n) + var indexC = make([]int, n) + var indexR = make([]int, n) + var ipiV = make([]int, n) + var iCol, iRow int + var dum, pivinv float64 + + for i := 0; i < n; i++ { + for j := 0; j < n; j++ { + if i == j { + b[i*n+j] = 1 + } else { + b[i*n+j] = 0 + } + } + } + + for j := 0; j < n; j++ { + ipiV[j] = 0 + } + + for i := 0; i < n; i++ { + var big float64 = 0 + for j := 0; j < n; j++ { + if ipiV[j] != 1 { + for k := 0; k < n; k++ { + if ipiV[k] == 0 { + absoluteValue := math.Abs(X[j*n+k]) + if absoluteValue >= big { + big = absoluteValue + iRow = j + iCol = k + } + } + } + } + } + ipiV[iCol]++ + if iRow != iCol { + for l := 0; l < n; l++ { + X[iRow*n+l], X[iCol*n+l] = X[iCol*n+l], X[iRow*n+l] + } + for l := 0; l < m; l++ { + b[iRow*n+l], b[iCol*n+l] = b[iCol*n+l], b[iRow*n+l] + } + } + indexR[i] = iRow + indexC[i] = iCol + + if X[iCol*n+iCol] == 0 { + return false + } // Singular + + pivinv = 1 / X[iCol*n+iCol] + X[iCol*n+iCol] = 1 + for l := 0; l < n; l++ { + X[iCol*n+l] *= pivinv + } + for l := 0; l < m; l++ { + b[iCol*n+l] *= pivinv + } + + for ll := 0; ll < n; ll++ { + if ll != iCol { + dum = X[ll*n+iCol] + X[ll*n+iCol] = 0 + for l := 0; l < n; l++ { + X[ll*n+l] -= X[iCol*n+l] * dum + } + for l := 0; l < m; l++ { + b[ll*n+l] -= b[iCol*n+l] * dum + } + } + } + } + + for l := n - 1; l >= 0; l-- { + if indexR[l] != indexC[l] { + for k := 0; k < n; k++ { + X[k*n+indexR[l]], X[k*n+indexC[l]] = X[k*n+indexC[l]], X[k*n+indexR[l]] + } + } + } + + return true +} + +// matrixInverseByCol 矩阵求逆 列主元消去法 +// https://github.com/zourongcsu/matrxi-algorithm/blob/master/inverse_matrix.cpp +func matrixInverseByCol(a [][]float64) ([][]float64, bool) { + // eMat 返回 n 阶单位矩阵 + var eMat = func(n int) ([][]float64, bool) { + /* + 返回n阶单位矩阵 + 输入 : + n 阶数 + 输出 : + sol 解值 + err 解出标志：false-未解出或达到步数上限； + true-全部解出 + */ + sol := make([][]float64, n) + for i := 0; i < n; i++ { + sol[i] = make([]float64, n) + } + var err bool = false + + //判断阶数 + if n < 1 { + return nil, err + } + + //分配元素 + for i := 0; i < n; i++ { + sol[i][i] = 1.0 + } + + err = true + return sol, err + } + // maxAbs 向量第一个绝对值最大值及其位置 + var maxAbs = func(a []float64) (float64, int, bool) { + var sol float64 + var ii int + var err bool = false + + n := len(a) + ii = 0 + sol = a[ii] + for i := 1; i < n; i++ { + if math.Abs(sol) < math.Abs(a[i]) { + ii = i + sol = a[i] + } + } + + err = true + return sol, ii, err + } + + var err bool = false + n := len(a) + temp0, _ := eMat(n) + b := temp0 + sol := b + temp1 := make([]float64, n) + + //判断是否方阵 + if len(a) != len(a[0]) { + return sol, err + } + + //主元消去 + for i := 0; i < n; i++ { + //求第i列的主元素并调整行顺序 + aCol := make([]float64, n-i) + for iCol := i; iCol < n; iCol++ { + aCol[iCol-i] = a[iCol][i] + } + _, ii, _ := maxAbs(aCol) + if ii+i != i { + temp1 = a[ii+i] + a[ii+i] = a[i] + a[i] = temp1 + temp1 = b[ii+i] + b[ii+i] = b[i] + b[i] = temp1 + } + + //列消去 + //本行主元置一 + mul := a[i][i] + for j := 0; j < n; j++ { + a[i][j] = a[i][j] / mul + b[i][j] = b[i][j] / mul + } + //其它列置零 + for j := 0; j < n; j++ { + if j != i { + mul = a[j][i] / a[i][i] + for k := 0; k < n; k++ { + a[j][k] = a[j][k] - a[i][k]*mul + b[j][k] = b[j][k] - b[i][k]*mul + } + } + } + } + + sol = b + err = true + return sol, err +} + +func matrixInverseByCol_(x []float64, n int) ([]float64, bool) { + a := make([][]float64, n) + for i := 0; i < n; i++ { + a[i] = x[i*n : i*n+n] + } + aa, ok := matrixInverseByCol(a) + if !ok { + return x, false + } + + var xx []float64 + for i := 0; i < n; i++ { + xx = append(xx, aa[i]...) + } + + return xx, false +} + +func matrixInverse(x []float64, n int) ([]float64, bool) { + a := mat.NewDense(n, n, x) + var ia mat.Dense + + // Take the inverse of a and place the result in ia. + err := ia.Inverse(a) + if err != nil { + return x, false + } + + return ia.RawMatrix().Data, true +} diff --git a/ordinarykriging/matrix.go b/ordinarykriging/matrix.go new file mode 100644 index 0000000..c3d5bdc --- /dev/null +++ b/ordinarykriging/matrix.go @@ -0,0 +1,129 @@ +package ordinarykriging + +import ( + "math" +) + +// matrixTranspose The matrix is reversed, and the horizontal matrix becomes the vertical matrix +// 矩阵颠倒，横向矩阵变成纵向矩阵 +func matrixTranspose(X []float64, n, m int) []float64 { + Z := make([]float64, m*n) + for i := 0; i < n; i++ { + for j := 0; j < m; j++ { + Z[j*n+i] = X[i*m+j] + } + } + + return Z +} + +// matrixMultiply naive matrix multiplication +// 矩阵相乘, 横向矩阵乘纵向矩阵 +func matrixMultiply(X, Y []float64, n, m, p int) []float64 { + Z := make([]float64, n*p) + for i := 0; i < n; i++ { + for j := 0; j < p; j++ { + Z[i*p+j] = 0 + for k := 0; k < m; k++ { + Z[i*p+j] += X[i*m+k] * Y[k*p+j] + } + } + } + return Z +} + +// matrixAdd +// 矩阵相加 +func matrixAdd(X, Y []float64, n, m int) []float64 { + Z := make([]float64, n*m) + for i := 0; i < n; i++ { + for j := 0; j < m; j++ { + Z[i*m+j] = X[i*m+j] + Y[i*m+j] + } + } + + return Z +} + +// matrixDiag matrix algebra +func matrixDiag(c float64, n int) []float64 { + Z := make([]float64, n*n) + for i := 0; i < n; i++ { + Z[i*n+i] = c + } + return Z +} + +// matrixChol cholesky decomposition +// Cholesky 分解 +func matrixChol(X []float64, n int) bool { + p := make([]float64, n) + + for i := 0; i < n; i++ { + p[i] = X[i*n+i] + } + + for i := 0; i < n; i++ { + for j := 0; j < i; j++ { + p[i] -= X[i*n+j] * X[i*n+j] + } + if p[i] <= 0 { + return false + } + p[i] = math.Sqrt(p[i]) + for j := i + 1; j < n; j++ { + for k := 0; k < i; k++ { + X[j*n+i] -= X[j*n+k] * X[i*n+k] + X[j*n+i] /= p[i] + } + } + } + + for i := 0; i < n; i++ { + X[i*n+i] = p[i] + } + return true +} + +// matrixChol2inv inversion of cholesky decomposition +// cholesky 分解的求逆 +func matrixChol2inv(X []float64, n int) { + var i, j, k int + var sum float64 + + for i = 0; i < n; i++ { + X[i*n+i] = 1 / X[i*n+i] + for j = i + 1; j < n; j++ { + sum = 0 + for k = i; k < j; k++ { + sum -= X[j*n+k] * X[k*n+i] + } + X[j*n+i] = sum / X[j*n+j] + } + } + + for i = 0; i < n; i++ { + for j = i + 1; j < n; j++ { + X[i*n+j] = 0 + } + } + + for i = 0; i < n; i++ { + X[i*n+i] *= X[i*n+i] + for k = i + 1; k < n; k++ { + X[i*n+i] += X[k*n+i] * X[k*n+i] + } + + for j = i + 1; j < n; j++ { + for k = j; k < n; k++ { + X[i*n+j] += X[k*n+i] * X[k*n+j] + } + } + } + + for i = 0; i < n; i++ { + for j = 0; j < i; j++ { + X[i*n+j] = X[j*n+i] + } + } +} diff --git a/ordinary/ordinary.go b/ordinarykriging/ordinarykriging.go similarity index 95% rename from ordinary/ordinary.go rename to ordinarykriging/ordinarykriging.go index a8c7c2e..e0285fa 100644 --- a/ordinary/ordinary.go +++ b/ordinarykriging/ordinarykriging.go @@ -1,8 +1,8 @@ -// Package ordinary +// Package ordinarykriging // Ordinary Kriging（OK） // 普通克里金 -package ordinary +package ordinarykriging import ( "github.com/liuvigongzuoshi/go-kriging/canvas" @@ -177,19 +177,19 @@ func (variogram *Variogram) Train(model ModelType, sigma2 float64, alpha float64 } // Least squares - var Xt = krigingMatrixTranspose(X, n, 2) - var Z = krigingMatrixMultiply(Xt, X, 2, n, 2) - Z = krigingMatrixAdd(Z, krigingMatrixDiag(float64(1)/alpha, 2), 2, 2) + var Xt = matrixTranspose(X, n, 2) + var Z = matrixMultiply(Xt, X, 2, n, 2) + Z = matrixAdd(Z, matrixDiag(float64(1)/alpha, 2), 2, 2) var cloneZ = make([]float64, len(Z)) copy(cloneZ, Z) - if krigingMatrixChol(Z, 2) { - krigingMatrixChol2inv(Z, 2) + if matrixChol(Z, 2) { + matrixChol2inv(Z, 2) } else { - krigingMatrixSolve(cloneZ, 2) - Z = cloneZ + // TODO false + Z, _ = matrixInverse(cloneZ, 2) } - var W = krigingMatrixMultiply(krigingMatrixMultiply(Z, Xt, 2, 2, n), Y, 2, n, 1) + var W = matrixMultiply(matrixMultiply(Z, Xt, 2, 2, n), Y, 2, n, 1) // Variogram parameters variogram.Nugget = W[0] @@ -216,19 +216,19 @@ func (variogram *Variogram) Train(model ModelType, sigma2 float64, alpha float64 } // Inverse penalized Gram matrix projected to target vector - var C = krigingMatrixAdd(K, krigingMatrixDiag(sigma2, n), n, n) + var C = matrixAdd(K, matrixDiag(sigma2, n), n, n) var cloneC = make([]float64, len(C)) copy(cloneC, C) - if krigingMatrixChol(C, n) { - krigingMatrixChol2inv(C, n) + if matrixChol(C, n) { + matrixChol2inv(C, n) } else { - krigingMatrixSolve(cloneC, n) - C = cloneC + // TODO false + C, _ = matrixInverse(cloneC, n) } // Copy unprojected inverted matrix as K 复制未投影的逆矩阵为K K = C - var M = krigingMatrixMultiply(C, variogram.t, n, n, 1) + var M = matrixMultiply(C, variogram.t, n, n, 1) variogram.K = K variogram.M = M @@ -249,7 +249,7 @@ func (variogram *Variogram) Predict(x, y float64) float64 { ) } - return krigingMatrixMultiply(k, variogram.M, 1, variogram.N, 1)[0] + return matrixMultiply(k, variogram.M, 1, variogram.N, 1)[0] } func (variogram *Variogram) Variance(x, y float64) { diff --git a/ordinarykriging/ordinarykriging_test.go b/ordinarykriging/ordinarykriging_test.go new file mode 100644 index 0000000..4cbc258 --- /dev/null +++ b/ordinarykriging/ordinarykriging_test.go @@ -0,0 +1,86 @@ +package ordinarykriging_test + +import ( + "fmt" + "image/png" + "math/rand" + "os" + "path/filepath" + "testing" + "time" + + "github.com/liuvigongzuoshi/go-kriging/ordinarykriging" +) + +const pngDirPath = "tempdata" + +var ( + randomValues, randomLats, randomLons = generateData(100) +) + +func randFloats(min, max float64, n int) []float64 { + s := rand.NewSource(time.Now().Unix()) + r := rand.New(s) + res := make([]float64, n) + for i := range res { + res[i] = min + r.Float64()*(max-min) + } + return res +} + +func generateData(count int) (FloatList, FloatList, FloatList) { + var randomValues, randomLats, randomLons FloatList + randomValues = append(randomValues, randFloats(0, 100, count)...) + randomLats = append(randomLats, randFloats(117.95, 118.05, count)...) + randomLons = append(randomLons, randFloats(31.95, 32.05, count)...) + return randomValues, randomLats, randomLons +} + +func TestVariogram_Plot(t *testing.T) { + ordinaryKriging := ordinarykriging.NewOrdinary(randomValues, randomLats, randomLons) + ordinaryKriging.Train(ordinarykriging.Exponential, 0, 100) + + contourRectangle := ordinaryKriging.Contour(500, 500) + pngPath := fmt.Sprintf("%v/%v.png", pngDirPath, time.Now().Format("2006-01-02 15:04:05")) + img := ordinaryKriging.PlotPng(contourRectangle) + + err := os.MkdirAll(filepath.Dir(pngPath), os.ModePerm) + if err != nil { + return + } + file, err := os.Create(pngPath) + if err != nil { + return + } + defer file.Close() + png.Encode(file, img) +} + +func BenchmarkVariogram_Train_Exponential(b *testing.B) { + for n := 0; n < b.N; n++ { + ordinaryKriging := ordinarykriging.NewOrdinary(randomValues, randomLats, randomLons) + ordinaryKriging.Train(ordinarykriging.Exponential, 0, 100) + } +} + +func BenchmarkVariogram_Train_Spherical(b *testing.B) { + for n := 0; n < b.N; n++ { + ordinaryKriging := ordinarykriging.NewOrdinary(randomValues, randomLats, randomLons) + ordinaryKriging.Train(ordinarykriging.Spherical, 0, 100) + } +} + +func BenchmarkVariogram_Train_Gaussian(b *testing.B) { + for n := 0; n < b.N; n++ { + ordinaryKriging := ordinarykriging.NewOrdinary(randomValues, randomLats, randomLons) + ordinaryKriging.Train(ordinarykriging.Gaussian, 0, 100) + } +} + +func BenchmarkVariogram_Contour(b *testing.B) { + ordinaryKriging := ordinarykriging.NewOrdinary(randomValues, randomLats, randomLons) + ordinaryKriging.Train(ordinarykriging.Exponential, 0, 100) + for n := 0; n < b.N; n++ { + ordinaryKriging.Contour(600, 600) + } +} diff --git a/ordinary/parallel.go b/ordinarykriging/parallel.go similarity index 75% rename from ordinary/parallel.go rename to ordinarykriging/parallel.go index 0b7b603..d20257f 100644 --- a/ordinary/parallel.go +++ b/ordinarykriging/parallel.go @@ -1,15 +1,15 @@ -package ordinary +package ordinarykriging import ( "context" "sync" ) -// GroupFunc 调用函数 -type GroupFunc func() error +// groupFunc 调用函数 +type groupFunc func() error -// NewParallel 创建 -func NewParallel(ctx context.Context, handles ...GroupFunc) error { +// newParallel 创建 +func newParallel(ctx context.Context, handles ...groupFunc) error { errChan := make(chan error) doneChan := make(chan *struct{}) @@ -50,8 +50,8 @@ func NewParallel(ctx context.Context, handles ...GroupFunc) error { } } -// Merge 扇入函数（组件），把多个 channel 中的数据发送到一个 channel 中 -func Merge(ins ...<-chan string) <-chan string { +// merge 扇入函数（组件），把多个 channel 中的数据发送到一个 channel 中 +func merge(ins ...<-chan string) <-chan string { var wg sync.WaitGroup out := make(chan string) diff --git a/ordinary/type.go b/ordinarykriging/type.go similarity index 97% rename from ordinary/type.go rename to ordinarykriging/type.go index 3a602e0..75e1859 100644 --- a/ordinary/type.go +++ b/ordinarykriging/type.go @@ -1,4 +1,4 @@ -package ordinary +package ordinarykriging import "image/color" @@ -55,7 +55,7 @@ func (t DistanceList) Swap(i, j int) { } type GridMatrices struct { - Data [][]float64 `json:"data"` + Data [][]float64 `json:"tempdata"` Width float64 `json:"width"` Xlim [2]float64 `json:"xLim"` Ylim [2]float64 `json:"yLim"` diff --git a/testdata/fonts/source-han-sans-sc/light.ttf b/testdata/fonts/source-han-sans-sc/light.ttf new file mode 100644 index 0000000..0c4b78c Binary files /dev/null and b/testdata/fonts/source-han-sans-sc/light.ttf differ diff --git a/testdata/fonts/source-han-sans-sc/medium.ttf b/testdata/fonts/source-han-sans-sc/medium.ttf new file mode 100644 index 0000000..ca36cb6 Binary files /dev/null and b/testdata/fonts/source-han-sans-sc/medium.ttf differ diff --git a/testdata/fonts/source-han-sans-sc/regular.ttf b/testdata/fonts/source-han-sans-sc/regular.ttf new file mode 100644 index 0000000..4f381c9 Binary files /dev/null and b/testdata/fonts/source-han-sans-sc/regular.ttf differ