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requirements.txt
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#
# This file is autogenerated by pip-compile with python 3.8
# To update, run:
#
# pip-compile
#
appdirs==1.4.4
# via intake
asciitree==0.3.3
# via cooler
biopython==1.77
# via pore-c (setup.py)
click==7.1.2
# via
# cooler
# distributed
# pairtools
# pore-c (setup.py)
cloudpickle==1.6.0
# via distributed
cooler==0.8.11
# via pore-c (setup.py)
cramjam==2.3.2
# via fastparquet
cython==0.29.23
# via
# pairtools
# pyranges
# pyrle
# sorted-nearest
cytoolz==0.10.1
# via cooler
dask==2.30.0
# via
# distributed
# intake
# intake-parquet
# pore-c (setup.py)
decorator==4.4.2
# via networkx
dill==0.3.4
# via multiprocess
distributed==2.30.1
# via pore-c (setup.py)
entrypoints==0.3
# via intake
fastparquet==0.6.3
# via intake-parquet
fsspec==2021.6.1
# via
# fastparquet
# intake
h5py==3.3.0
# via cooler
heapdict==1.0.1
# via zict
intake==0.6.2
# via
# intake-parquet
# pore-c (setup.py)
intake-parquet==0.2.3
# via pore-c (setup.py)
jinja2==3.0.1
# via intake
markupsafe==2.0.1
# via jinja2
msgpack==1.0.2
# via distributed
multiprocess==0.70.12.2
# via cooler
natsort==7.1.1
# via
# pyranges
# pyrle
ncls==0.0.60
# via
# pore-c (setup.py)
# pyranges
networkx==2.5.1
# via pore-c (setup.py)
nose==1.3.7
# via pairtools
numpy==1.19.5
# via
# biopython
# cooler
# fastparquet
# h5py
# ncls
# pairtools
# pandas
# pore-c (setup.py)
# pyarrow
# pyrle
# scipy
# sorted-nearest
pairtools==0.3.0
# via pore-c (setup.py)
pandas==1.3.0
# via
# cooler
# fastparquet
# intake-parquet
# pore-c (setup.py)
# pyranges
# pyrle
psutil==5.8.0
# via distributed
pyarrow==1.0.1
# via
# intake-parquet
# pore-c (setup.py)
pydantic==1.6.2
# via pore-c (setup.py)
pyfaidx==0.6.0
# via cooler
pypairix==0.3.7
# via cooler
pyranges==0.0.71
# via pore-c (setup.py)
pyrle==0.0.33
# via pyranges
pysam==0.16.0.1
# via pore-c (setup.py)
python-dateutil==2.8.1
# via pandas
pytz==2021.1
# via pandas
pyyaml==5.4.1
# via
# cooler
# dask
# distributed
# intake
scipy==1.7.0
# via cooler
simplejson==3.17.3
# via cooler
six==1.16.0
# via
# cooler
# pyfaidx
# python-dateutil
# streamz
# thrift
sorted-nearest==0.0.33
# via pyranges
sortedcontainers==2.4.0
# via distributed
streamz==0.6.2
# via pore-c (setup.py)
tabulate==0.8.9
# via
# pyranges
# pyrle
tblib==1.7.0
# via distributed
thrift==0.13.0
# via fastparquet
toolz==0.11.1
# via
# cytoolz
# distributed
# streamz
tornado==6.1
# via
# distributed
# streamz
tqdm==4.61.2
# via pore-c (setup.py)
zict==2.0.0
# via
# distributed
# streamz
# The following packages are considered to be unsafe in a requirements file:
# setuptools