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Issues list

Support values
#5 opened Nov 6, 2018 by johanneswerner updated Nov 11, 2018
Issue with visualization
#12 opened Dec 7, 2018 by pavlo888 updated Dec 30, 2018
Gene gain/loss, duplication
#20 opened Mar 15, 2019 by mdieser updated Apr 1, 2019
ete2 missing?
#13 opened Dec 29, 2018 by shlomobl updated Jun 28, 2019
python3
#27 opened Jul 1, 2019 by JFsanchezherrero updated Jul 5, 2019
Extracting data for individual genomes
#28 opened Jul 3, 2019 by mdieser updated Jul 5, 2019
Very diverse pangenome?
#30 opened Aug 1, 2019 by apredeus updated Aug 5, 2019
Issue with step 8
#24 opened Apr 10, 2019 by jpaganini updated Nov 9, 2019
Running sh run-TestSet.sh cause error
#31 opened Nov 9, 2019 by OlegKotcar updated Nov 10, 2019
How to prepare file "stran_list"(step 01) ?
#32 opened Nov 28, 2019 by fengshuo112 updated Nov 28, 2019
xb_xref err
#36 opened May 22, 2020 by Bruce-BC updated May 22, 2020
Biopython Parser Warning
#37 opened Jun 17, 2020 by kbojanic updated Jun 17, 2020
Failed to run Test
#34 opened Apr 15, 2020 by stheil15 updated Jun 29, 2020
DIAMOND fails to produce pairwise alignments in Step 5
#38 opened Aug 5, 2020 by awalling updated Aug 5, 2020
Long running time or bug?
#35 opened Apr 22, 2020 by Zick007 updated Aug 18, 2020
Failed to read gbff files
#39 opened Aug 20, 2020 by oeco28 updated Aug 23, 2020
Running workflow for new data
#40 opened Nov 24, 2020 by smb20200615 updated Nov 24, 2020
docs still state to install miniconda2
#41 opened Dec 9, 2020 by nick-youngblut updated Dec 9, 2020
Issue with Step-09
#46 opened Jul 15, 2021 by raavan-deka updated Jul 15, 2021
PanX visualization: No gene tree
#47 opened Jul 22, 2021 by MarietteEK updated Aug 24, 2021
Fail to run TestSet using panX
#23 opened Mar 28, 2019 by limin321 updated Oct 27, 2021
ValueError
#49 opened Jan 13, 2022 by byeollee updated Jan 13, 2022
Roary output visualization using panX
#50 opened Feb 9, 2022 by leabact updated Feb 9, 2022
Could this software uesd in animal?
#48 opened Oct 11, 2021 by ld9866 updated Mar 22, 2022
Failed to export myPangenome's geneCluster.json (step 10)
#51 opened Apr 20, 2022 by jhcuarta updated Apr 20, 2022
ProTip! Exclude everything labeled bug with -label:bug.