diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 8ccb5c431..7d5dbf456 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3174,6 +3174,7 @@ Declaration(Class(obo:GO_0031045)) Declaration(Class(obo:GO_0036053)) Declaration(Class(obo:GO_0036376)) Declaration(Class(obo:GO_0042599)) +Declaration(Class(obo:GO_0044237)) Declaration(Class(obo:GO_0044316)) Declaration(Class(obo:GO_0045428)) Declaration(Class(obo:GO_0046697)) @@ -5184,6 +5185,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "BTO:0001780") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000162 "FMA:62901") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") oboInOwl:hasExactSynonym obo:CL_0000162 "gastric parietal cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "Wikipedia:Parietal_cell") oboInOwl:hasExactSynonym obo:CL_0000162 "oxyntic cell") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29263912") Annotation(oboInOwl:hasDbXref "PMID:31613538") rdfs:comment obo:CL_0000162 "Parietal cells have dynamic, actin-supported microvilli that increase in number during active secretion, playing a crucial role in secreting hydrochloric acid and intrinsic factor. The structure and regulation of these microvilli are influenced by proteins such as ASAP3, which modulates Arf6 activity and actin assembly, thereby controlling microvilli formation and parietal cell function.") AnnotationAssertion(rdfs:label obo:CL_0000162 "parietal cell") SubClassOf(obo:CL_0000162 obo:CL_0000151) @@ -8310,11 +8312,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(rdfs:label obo:CL_0000554 "gastrin stimulating hormone secreting cell") SubClassOf(obo:CL_0000554 obo:CL_0000167) -# Class: obo:CL_0000555 (neuronal brush cell) +# Class: obo:CL_0000555 (obsolete neuronal brush cell) -AnnotationAssertion(rdfs:label obo:CL_0000555 "neuronal brush cell") -SubClassOf(obo:CL_0000555 obo:CL_0000540) -SubClassOf(obo:CL_0000555 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017)) +AnnotationAssertion(obo:IAO_0100001 obo:CL_0000555 obo:CL_4023161) +AnnotationAssertion(rdfs:label obo:CL_0000555 "obsolete neuronal brush cell") +AnnotationAssertion(owl:deprecated obo:CL_0000555 "true"^^xsd:boolean) # Class: obo:CL_0000556 (megakaryocyte) @@ -14686,7 +14688,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002085 "BTO:0001953") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002085 "FMA:54560") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29351662") oboInOwl:hasExactSynonym obo:CL_0002085 "stretch cell") AnnotationAssertion(rdfs:label obo:CL_0002085 "tanycyte") -SubClassOf(obo:CL_0002085 obo:CL_0000683) +SubClassOf(obo:CL_0002085 obo:CL_0000065) SubClassOf(obo:CL_0002085 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004670)) # Class: obo:CL_0002086 (specialized cardiac myocyte) @@ -30673,6 +30675,7 @@ SubClassOf(obo:CL_4023160 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9193142") Annotation(oboInOwl:hasDbXref "WikipediaVersioned:Unipolar_brush_cell&oldid=1045937026") obo:IAO_0000115 obo:CL_4023161 "An excitatory glutamatergic interneuron found in the granular layer of the cerebellar cortex and also in the granule cell domain of the cochlear nucleus. Unipolar brush cells have a round or oval cell body with usually a single short dendrite that ends in a brush-like tuft of short dendrites unique to them known as dendrioles.") AnnotationAssertion(terms:contributor obo:CL_4023161 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4023161 "neuronal brush cell") AnnotationAssertion(rdfs:label obo:CL_4023161 "unipolar brush cell") SubClassOf(obo:CL_4023161 obo:CL_0000099) SubClassOf(obo:CL_4023161 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0070025)) diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 43835cc06..f1fbddd67 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -17109,6 +17109,12 @@ DisjointClasses( ) DisjointClasses( ) +# Class: (obsolete neuronal brush cell) + +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "https://github.com/obophenotype/cell-ontology/issues/2634") +AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) + # Class: (vacuole inheritance) AnnotationAssertion(Annotation( "GOC:mcc") Annotation( "PMID:10873824") Annotation( "PMID:14616069") "The distribution of vacuoles into daughter cells after mitosis or meiosis, mediated by interactions between vacuoles and the cytoskeleton.")