From 1b3aa4b6cf411470c29ea4dc0e0f3d420b10191b Mon Sep 17 00:00:00 2001 From: cmungall Date: Mon, 28 Oct 2024 17:00:36 +0000 Subject: [PATCH 1/2] [create-pull-request] automated change --- src/ontology/cl-edit.owl | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 79155c801..c07085346 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3846,7 +3846,6 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000034 "animal stem cell") AnnotationAssertion(rdfs:comment obo:CL_0000034 "This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.") AnnotationAssertion(rdfs:label obo:CL_0000034 "stem cell") EquivalentClasses(obo:CL_0000034 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) -SubClassOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002162 obo:NCBITaxon_33208)) SubClassOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154)) # Class: obo:CL_0000035 (single fate stem cell) From d5f9299104876cf8689805cb99615b750c2b9338 Mon Sep 17 00:00:00 2001 From: Damien Goutte-Gattat Date: Wed, 22 Jan 2025 15:36:37 +0000 Subject: [PATCH 2/2] Remove obsolete comment on "stem cell" Since "stem cell" is no longer taxon-restricted to metazoan, the comment advising against its use for non-metazoan is no longer relevant. Also "animal stem cell" is no longer an exact synonym. --- src/ontology/cl-edit.owl | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index f78251ad7..86899851a 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3886,8 +3886,7 @@ SubClassOf(obo:CL_0000033 obo:CL_0000152) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "MESH:D013234") obo:IAO_0000115 obo:CL_0000034 "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000034 "CALOHA:TS-2086") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000034 "FMA:63368") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000034 "animal stem cell") -AnnotationAssertion(rdfs:comment obo:CL_0000034 "This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’.") +AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_0000034 "animal stem cell") AnnotationAssertion(rdfs:label obo:CL_0000034 "stem cell") EquivalentClasses(obo:CL_0000034 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0017145))) SubClassOf(obo:CL_0000034 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154))