diff --git a/src/soca/commands/create_summary.py b/src/soca/commands/create_summary.py
index fbba851..1eb40e3 100755
--- a/src/soca/commands/create_summary.py
+++ b/src/soca/commands/create_summary.py
@@ -1,7 +1,7 @@
from datetime import date, datetime
import json
import os
-from soca import __version__ as soca_ver
+from .. import __version__ as soca_ver
from somef import __version__ as somef_ver
from .upload_summary import upload_summary
diff --git a/src/soca/commands/portal/metadata.py b/src/soca/commands/portal/metadata.py
index f26e0ee..df124a3 100755
--- a/src/soca/commands/portal/metadata.py
+++ b/src/soca/commands/portal/metadata.py
@@ -1,4 +1,4 @@
-from soca import base_dir
+from ... import base_dir
from pathlib import Path
from os import listdir
from os.path import isfile, join
@@ -10,45 +10,49 @@
from pygments.formatters import HtmlFormatter
import mistune
import os
-#from cffconvert import Citation
-#from cffconvert.cli import cli as cff2bibcli
+
+
+# from cffconvert import Citation
+# from cffconvert.cli import cli as cff2bibcli
class metadata(object):
- def __init__(self, repo_metadata_dir, repo_metadata, embedded = False):
+ def __init__(self, repo_metadata_dir, repo_metadata, embedded=False):
self.repo_metadata_dir = os.path.abspath(repo_metadata_dir)
self.md = repo_metadata
self.base = 'https://github.com/oeg-upm/soca/tree/main/src/soca/assets' if embedded else ''
# Assets ####################################################
def logo(self):
- logo = safe_dic(safe_dic(safe_dic(safe_list(self.md,'logo'),0),'result'),'value')
- #if logo:
- #if str(logo).startswith('https://github'):
- #logo = logo.replace("github.com", "raw.githubusercontent.com").replace("/blob/", "/")
+ logo = safe_dic(safe_dic(safe_dic(safe_list(self.md, 'logo'), 0), 'result'), 'value')
+ # if logo:
+ # if str(logo).startswith('https://github'):
+ # logo = logo.replace("github.com", "raw.githubusercontent.com").replace("/blob/", "/")
return logo if logo else f"{self.base}img/github-default.svg"
def html_repo_type(self):
repo_type = self.repo_type()
if not repo_type:
return ''
- if repo_type == 'web':
- return f'
'
- elif repo_type == 'ontology':
- #ontologies = safe_dic(safe_dic(self.md,'ontologies'),'excerpt')
- ontologies = safe_dic(self.md,'ontologies')
+ if repo_type == 'web':
+ return f'
'
+ elif repo_type == 'ontology':
+ # ontologies = safe_dic(safe_dic(self.md,'ontologies'),'excerpt')
+ ontologies = safe_dic(self.md, 'ontologies')
if ontologies:
- onto_list = '\n'.join(list(dict.fromkeys([ f'* <{safe_dic(safe_dic(x,"result"),"value")}>' for x in ontologies if 'http' in safe_dic(safe_dic(x,"result"),"value")])))
- #onto_list = '\n'.join([ f'* <{safe_dic(x,"file_url")}>' for x in ontologies])
+ onto_list = '\n'.join(list(dict.fromkeys(
+ [f'* <{safe_dic(safe_dic(x, "result"), "value")}>' for x in ontologies if
+ 'http' in safe_dic(safe_dic(x, "result"), "value")])))
+ # onto_list = '\n'.join([ f'* <{safe_dic(x,"file_url")}>' for x in ontologies])
return self.icon_wrapper(
- icon_html = f'
',
- modal_html= self.modal(
- title= 'Ontologies',
- body= onto_list
+ icon_html=f'
',
+ modal_html=self.modal(
+ title='Ontologies',
+ body=onto_list
),
other_field='class="m_ontology"'
)
- return f'
'
+ return f'
'
def icon_star(self):
return f"{self.base}repo_icons/star.png"
@@ -67,7 +71,8 @@ def html_languages(self):
return ''
language_icons_dir = Path(base_dir, 'assets', 'language_icons')
- supported_languages = [str(f).removesuffix('.svg').lower() for f in listdir(language_icons_dir) if isfile(join(language_icons_dir, f))]
+ supported_languages = [str(f).removesuffix('.svg').lower() for f in listdir(language_icons_dir) if
+ isfile(join(language_icons_dir, f))]
html = ''
@@ -86,7 +91,7 @@ def copy_btn(self):
"""
def html_license(self, license_input):
- if safe_dic(license_input,"url"):
+ if safe_dic(license_input, "url"):
html = """
@@ -105,14 +110,13 @@ def html_license(self, license_input):
"""
else:
html = f"""
- {safe_dic(license_input,"name")}
+ {safe_dic(license_input, "name")}
Description:
There is not an available description.
"""
return html
-
def html_repo_icons(self):
html = ''
@@ -120,92 +124,92 @@ def html_repo_icons(self):
readme_url = self.readme()
if readme_url:
html += self.icon_wrapper(
- icon_html = f"""
+ icon_html=f"""
+ {self.add_tooltip('bottom', 'Readme')}>
""")
license = self.license()
if license:
-
html += self.icon_wrapper(
- icon_html = f"""
+ {self.add_tooltip('bottom', f'License: {safe_dic(license, "name")}')}>
""",
- modal_html= self.modal(
- title = 'License',
- body = self.html_license(license),
+ modal_html=self.modal(
+ title='License',
+ body=self.html_license(license),
markdown_translation=False),
- other_field = f'data-url="{safe_dic(license,"url")}"',
- extra_class = 'ref-license'
- )
-
+ other_field=f'data-url="{safe_dic(license, "url")}"',
+ extra_class='ref-license'
+ )
+
notebook = self.notebook()
if notebook:
mk_list = "\n".join([f'* <{n}>' for n in notebook])
html += self.icon_wrapper(
- icon_html = f"""
""",
-
- modal_html = self.modal(
- title = 'Notebook',
- body = mk_list))
+ {self.add_tooltip('bottom', 'Notebook')}>""",
+ modal_html=self.modal(
+ title='Notebook',
+ body=mk_list))
docker = self.docker()
if docker:
mk_list = "\n".join([f'* <{d}>' for d in docker])
html += self.icon_wrapper(
- icon_html = f"""
""",
+ {self.add_tooltip('bottom', "Docker")}>""",
- modal_html = self.modal(
- title = 'Docker',
- body = mk_list))
+ modal_html=self.modal(
+ title='Docker',
+ body=mk_list))
papers = self.paper()
if papers:
for paper in papers:
html += self.icon_wrapper(
- icon_html = f"""
+ icon_html=f"""
+ {self.add_tooltip('bottom', paper.title_paper)}>
""")
- #TODO check ScdocLexer
+ # TODO check ScdocLexer
citations = self.citations()
if citations:
citation = "No Citation Indicated"
formatter = HtmlFormatter(linenos=False, full=True, style='friendly')
- #TODO once fixed turn to if, elif, else so that it prioritises CFF (converted to bibtex format)
- if 'cff' in citations:
+ # TODO once fixed turn to if, elif, else so that it prioritises CFF (converted to bibtex format)
+ if 'bibtex' in citations:
+ citation = safe_dic(citations, "bibtex")
+ elif 'cff' in citations:
+ citation = safe_dic(citations, "cff")
+ if citation:
+ citation.replace("`", "")
# try:
# cite = Citation(cffstr=safe_dic(citations,"cff"))
# citation = cite.as_bibtex()
# except:
- pass
- if 'bibtex' in citations:
- citation = safe_dic(citations,"bibtex")
else:
try:
citation = citations['citation'][0]
- #citation = safe_list(safe_dic(citations,citation),0)
+ # citation = safe_list(safe_dic(citations,citation),0)
except Exception as e:
print(str(e))
html += self.icon_wrapper(
- icon_html = f"""
""",
- modal_html = self.modal(
- title = 'Citation',
- body = f'{highlight(citation, ScdocLexer(), formatter)}
',
+ {self.add_tooltip('bottom', f"Citation")}>""",
+ modal_html=self.modal(
+ title='Citation',
+ body=f'{highlight(citation, ScdocLexer(), formatter)}
',
markdown_translation=False,
extra_html=
- f"""
+ f"""
