Repositories list

• dDocentHPC

  Public
  hard fork of dDocent, edited to run without interactive user input

  Shell

  •5•2•13•0•Updated Jan 19, 2024Jan 19, 2024

• data_organization_principles

  Public
  0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

• morphoTools

  Public
  Tools for Tidy Morphological Data

  R

  •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

• morphological_tools

  Public
  From Hamilton et al 2020

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

• chat_gpt_prompts

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 2, 2023Mar 2, 2023

• read_multiqc

  Public
  Tools to read MultiQC outputs from FastQC, FastP, and FastQScreen

  R

  •0•0•1•0•Updated Dec 5, 2022Dec 5, 2022

• wlsUBUNTU_settings

  Public
  Shell

  •0•0•2•0•Updated Sep 9, 2022Sep 9, 2022

• angsdverse_tools

  Public
  Tools to support the angsdverse

  0•0•0•0•Updated May 20, 2022May 20, 2022

• read_mapping_summary

  Public
  Shell

  •0•0•0•0•Updated Apr 28, 2022Apr 28, 2022

• pgdspider_scripts

  Public
  these are scripts that will help you run pgdspider from the command line

  R

  •0•2•1•0•Updated Mar 8, 2022Mar 8, 2022

• bayescan2.1scripts

  Public
  scripts to process the output of bayescan2.1

  R

  •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

• fltrVCF

  Public
  a bash script to filter vcf files with RAD data

  Shell

  •0•0•9•0•Updated Mar 2, 2022Mar 2, 2022

• radBARCODER

  Public
  scripts to extract, align, and type mtDNA data from restriction site associated DNA

  Shell

  •1•0•2•0•Updated Nov 24, 2021Nov 24, 2021

• moments_pipeline_parallel

  Public
  dportik's 2D moments script modified to accept a SFS as input and for parallelization in linux

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 9, 2021Nov 9, 2021

• limpet_heat_budget_model

  Public
  R

  •0•0•0•0•Updated Sep 30, 2021Sep 30, 2021

• charybdis

  Public
  Metabarcoding Pipeline

  HTML

  •

  GNU General Public License v3.0

  •0•1•24•0•Updated Mar 12, 2021Mar 12, 2021

• fastqTOOLS

  Public
  Shell

  •0•0•1•0•Updated Feb 27, 2021Feb 27, 2021

• covid19_scenarios

  Public
  Models of COVID-19 outbreak trajectories and hospital demand

  TypeScript

  •

  MIT License

  •352•0•0•0•Updated Apr 9, 2020Apr 9, 2020

• PhotoGrid

  Public
  Windows software for ecological sampling of photographic data

  0•0•1•0•Updated Dec 10, 2019Dec 10, 2019

• RAD_demultiplex

  Public
  ddRAD Process RADtags Script to run in parallel

  Shell

  •0•0•1•0•Updated Nov 13, 2019Nov 13, 2019

• opihi_genome

  Public
  0•0•0•0•Updated Aug 29, 2019Aug 29, 2019

• PhilippinesR_Workshop2019

  Public
  R

  •0•3•0•0•Updated Jun 13, 2019Jun 13, 2019

• impostar

  Public
  ImPoStAR: Implement Population Structure Analyses in R

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 28, 2019May 28, 2019

• SequenceReportGenerator

  Public
  Generate a report on sequencing results using R Markdown.

  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Apr 3, 2019Apr 3, 2019

• geomorph

  Public
  Geomorph is a software package for performing all stages of geometric morphometric shape analysis of landmark points and curves in 2-and-3-dimensions as well as 3D surfaces in the R statistical computing environment. This repository is dedicated to providing stable and beta versions between CRAN uploads

  R

  •21•0•0•0•Updated Feb 8, 2019Feb 8, 2019

• lionfish_invader_number

  Public
  model used in Selwyn et al 2017 to simulate the number of female lionfish colonists in the Atlantic

  R

  •0•0•0•0•Updated Feb 4, 2019Feb 4, 2019

• makesapdb

  Public
  Produces an SAP-formatted Fasta from GIs, Accessions, scientific names, or taxonomic identifiers

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 7, 2019Jan 7, 2019

• prAMOVA

  Public
  analysis of molecular variance that probablistically accounts for genotype uncertainty cause by next-gen sequencing data

  0•0•0•0•Updated Sep 13, 2018Sep 13, 2018

• rad_haplotyper

  Public
  This branch of rad_haplotyper is 100% compatible with fltrVCF and dDocentHPC

  Perl

  •

  MIT License

  •4•0•0•0•Updated Aug 16, 2018Aug 16, 2018

• taxonomic_evaluation

  Public
  HTML

  •0•1•0•0•Updated Aug 4, 2018Aug 4, 2018