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stat_test.html
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/<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<title>RCRDB | Statistics</title>
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<meta name="description" content="dbSUPER is a database of cell-specific super-enhancers in mouse and human. It contains 60841 super-enahcners in 86 human and 5 mouse cell/tissue types." />
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Statistics
<small>Distribution of collected data sets related to circadian rhythm</small>
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<tr>
<p>Different typse of RNA-Seq</p>
<th><table cellspacing="0" cellpadding="0">
<col width="72">
<col width="59">
<col width="300">
<col width="70">
<col width="93" span="2">
<col width="84">
<tr>
<td width="72">Species</td>
<td width="59">Tissue</td>
<td width="300">Type</td>
<td width="70">Group</td>
<td width="456">Time points</td>
<td width="93">GEO_ID</td>
<td width="93">SRA_ID</td>
<td width="84">Pubmed_ID</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>mRNA-Seq</td>
<td>mRNA</td>
<td>ZT2,ZT6,ZT10,ZT14,ZT18,ZT22</td>
<td>GSE36916</td>
<td>SRP011981</td>
<td align="right">23150795</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>mRNA-Seq</td>
<td>mRNA</td>
<td>ZT0,ZT4,ZT8,ZT12,ZT16,ZT20</td>
<td>GSE70497</td>
<td>SRP060295</td>
<td align="right">26843191</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nascent-Seq</td>
<td>Nascent</td>
<td>ZT0,ZT4,ZT8,ZT12,ZT16,ZT20</td>
<td>GSE36916</td>
<td>SRP011984</td>
<td align="right">23150795</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>GRO-Seq</td>
<td>Nascent</td>
<td>ZT1,ZT4,ZT7,ZT10,ZT13,ZT16,ZT19,ZT22</td>
<td>GSE59486</td>
<td>SRP044381</td>
<td align="right">25416951</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Ribo-Seq</td>
<td>Ribo</td>
<td>ZT0,ZT2,ZT4,ZT6,ZT8,ZT10,ZT12,ZT14,ZT16,ZT18,ZT20,ZT22</td>
<td>GSE67305</td>
<td>SRP056576</td>
<td align="right">26486724</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Ribo-Seq</td>
<td>Ribo</td>
<td>ZT0,ZT2,ZT4,ZT6,ZT8,ZT10,ZT12,ZT14,ZT16,ZT18,ZT20,ZT22</td>
<td>GSE73553</td>
<td>SRP064304</td>
<td align="right">26554015</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>miRNA-Seq</td>
<td>miRNA</td>
<td>CT21,CT25,CT29,CT33,CT37,CT41,CT45</td>
<td>-</td>
<td>SRA025656</td>
<td align="right">23217262</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>miRNA-seq</td>
<td>miRNA</td>
<td>CT2,CT5,CT8,CT11,CT14,CT17,CT20,CT23</td>
<td>-</td>
<td>DRP001094</td>
<td align="right">24591654</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Total RNA-Seq</td>
<td>Total</td>
<td>ZT0,ZT2,ZT4,ZT6,ZT8,ZT10,ZT12,ZT14,ZT16,ZT18,ZT20,ZT22</td>
<td>GSE67305</td>
<td>SRP056576</td>
<td align="right">26486724</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Total RNA-Seq</td>
<td>Total</td>
<td>ZT0,ZT4,ZT8,ZT12,ZT16,ZT20</td>
<td>GSE57313</td>
<td>SRP041679</td>
<td align="right">24867642</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Total RNA-Seq</td>
<td>Total</td>
<td>ZT0,ZT2,ZT4,ZT6,ZT8,ZT10,ZT12,ZT14,ZT16,ZT18,ZT20,ZT22</td>
<td>GSE73552</td>
<td>SRP064298</td>
<td align="right">26554015</td>
</tr>
</table></th>
<!--
<th>Reference</th>
-->
</tr>
</thead>
<tbody>
<tr>
<td>
<p>Differential expression of WT VS KD/KO samples</p>
<table cellspacing="0" cellpadding="0">
<col width="65">
<col width="56">
<col width="111">
<col width="210">
<col width="104">
<col width="90">
<tr>
<td width="85">Species</td>
<td width="71">Tissue</td>
<td width="181">Gene</td>
<td width="276">Group</td>
<td width="212">Accession_ID</td>
<td width="98">Pubmed_ID</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Arntl</td>
<td>Core clock protein</td>
<td>GSE70497</td>
<td align="right">26843191</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Clock</td>
<td>Core clock protein</td>
<td>GSE30411</td>
<td align="right">22844252</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Per2</td>
<td>Core clock protein</td>
<td>GSE30139</td>
<td align="right">24049741</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cry1</td>
<td>Core clock protein</td>
<td>GSE13093</td>
<td align="right">19940241</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cry2</td>
<td>Core clock protein</td>
<td>GSE13093</td>
<td align="right">19940241</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d1</td>
<td>Core clock protein</td>
<td>GSE34020</td>
<td align="right">22460952</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d2</td>
<td>Core clock protein</td>
<td>GSE34020</td>
<td align="right">22460952</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Rora</td>
<td>Core clock protein</td>
<td>GSE7564</td>
<td align="right">17666523</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Rorc</td>
<td>Core clock protein</td>
<td>GSE7564</td>
<td align="right">17666523</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Ppara</td>
<td>Core clock protein</td>
<td>GSE14869</td>
<td align="right">20059764</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>DBP-TEF-HLF</td>
<td>Core clock protein</td>
<td>E-MEXP-565</td>
<td align="right">16814730</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Hdac3</td>
<td>Transcription factor</td>
<td>GSE25937</td>
<td align="right">21393543</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Sirt1</td>
<td>Transcription factor</td>
<td>GSE57830</td>
<td align="right">25083875</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Sirt6</td>
<td>Transcription factor</td>
<td>GSE57830</td>
<td align="right">25083875</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Ncor1</td>
<td>Transcription factor</td>
<td>GSE42537</td>
<td align="right">23292142</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Ncor2</td>
<td>Transcription factor</td>
<td>GSE42537</td>
<td align="right">23292142</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cebpa</td>
<td>Transcription factor</td>
<td>E-MTAB-178</td>
<td align="right">20378774</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr3c1</td>
<td>Transcription factor</td>
<td>GSE75682</td>
<td align="right">26711253</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Ncoa2</td>
<td>Transcription factor</td>
<td>GSE55002</td>
<td align="right">16423883</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Usf1</td>
<td>Transcription factor</td>
<td>GSE17442</td>
<td align="right">19995791</td>
</tr>
</table></td>
</tr>
<tr>
<td>
<p>ChIP-Seq data sets of transcriptional factors or histone modifications</p>
<table cellspacing="0" cellpadding="0">
<col width="70">
<col width="70">
<col width="80">
<col width="300">
<col width="329">
<col width="108">
<col width="100">
<col width="94">
<tr>
<td width="70">Species</td>
<td width="70">Tissue</td>
<td width="80">Antibody</td>
<td width="300">Group</td>
<td width="329">Time points</td>
<td width="108">GEO_number</td>
<td width="100">SRA_ID</td>
<td width="94">Pubmed_ID</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Arntl</td>
<td>Core clock protein</td>
<td>ZT2,ZT6,ZT10,ZT14,ZT18,ZT22</td>
<td>GSE26602</td>
<td>SRP005305</td>
<td align="right">21364973</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Arntl</td>
<td>Core clock protein</td>
<td>ZT8</td>
<td>GSE53828</td>
<td>SRP034940</td>
<td align="right">24385426</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Arntl</td>
<td>Core clock protein</td>
<td>-</td>
<td>GSE44609</td>
<td>SRP018829</td>
<td align="right">23580255</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Arntl</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Clock</td>
<td>Core clock protein</td>
<td>CT2,CT5,CT8,CT11,CT14,CT17,CT20,CT23</td>
<td>-</td>
<td>DRP001092</td>
<td align="right">24591654</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Clock</td>
<td>Core clock protein</td>
<td>ZT8</td>
<td>GSE53828</td>
<td>SRP034940</td>
<td align="right">24385426</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Clock</td>
<td>Core clock protein</td>
<td>-</td>
<td>GSE44609</td>
<td>SRP018829</td>
<td align="right">23580255</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Clock</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Clock</td>
<td>Core clock protein</td>
<td>ZT2,ZT6,ZT10,ZT14,ZT18,ZT22</td>
<td>GSE47144</td>
<td>SRP022948</td>
<td align="right">24395244</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cry1</td>
<td>Core clock protein</td>
<td>ZT20</td>
<td>GSE53828</td>
<td>SRP034940</td>
<td align="right">24385426</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cry1</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cry2</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Per1</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Per2</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d1</td>
<td>Core clock protein</td>
<td>ZT8</td>
<td>GSE34019</td>
<td>SRP009472</td>
<td align="right">22460952</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d1</td>
<td>Core clock protein</td>
<td>ZT10,ZT22</td>
<td>GSE26345</td>
<td>SRP008783</td>
<td align="right">22474260</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d1</td>
<td>Core clock protein</td>
<td>ZT10</td>
<td>GSE67962</td>
<td>SRP057271</td>
<td align="right">26044300</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d2</td>
<td>Core clock protein</td>
<td>ZT10,ZT22</td>
<td>GSE36375</td>
<td>SRP011388</td>
<td align="right">21393543</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr1d2</td>
<td>Core clock protein</td>
<td>ZT8</td>
<td>GSE34019</td>
<td>SRP009472</td>
<td align="right">22460952</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Rora</td>
<td>Core clock protein</td>
<td>ZT10</td>
<td>GSE67962</td>
<td>SRP057271</td>
<td align="right">26044300</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Rora</td>
<td>Core clock protein</td>
<td>ZT22</td>
<td>GSE59486</td>
<td>SRP044381</td>
<td align="right">25416951</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Rorc</td>
<td>Core clock protein</td>
<td>ZT10,ZT22</td>
<td>GSE67962</td>
<td>SRP057271</td>
<td align="right">26044300</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Npas2</td>
<td>Core clock protein</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Hdac3</td>
<td>Transcription factor</td>
<td>ZT10,ZT22</td>
<td>GSE26345</td>
<td>SRP008783</td>
<td align="right">22474260</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Hdac3</td>
<td>Transcription factor</td>
<td>ZT10</td>
<td>GSE67962</td>
<td>SRP057271</td>
<td align="right">26044300</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Mll3</td>
<td>Transcription factor</td>
<td>CT0,CT6,CT12,CT18</td>
<td>GSE37393</td>
<td>SRP012311</td>
<td align="right">23297224</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>p300</td>
<td>Transcription factor</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cbp</td>
<td>Transcription factor</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cebpb</td>
<td>Transcription factor</td>
<td>ZT11,ZT23</td>
<td>GSE59752</td>
<td>SRP044839</td>
<td align="right">25957148</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Cebpb</td>
<td>Transcription factor</td>
<td>ZT10</td>
<td>GSE59752</td>
<td>SRP044839</td>
<td align="right">25957148</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>NCoR</td>
<td>Transcription factor</td>
<td>ZT10,ZT22</td>
<td>GSE26345</td>
<td>SRP008783</td>
<td align="right">22474260</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr3c1</td>
<td>Transcription factor</td>
<td>ZT11,ZT23</td>
<td>GSE59752</td>
<td>SRP044839</td>
<td align="right">25957148</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Nr3c1</td>
<td>Transcription factor</td>
<td>ZT10</td>
<td>GSE45674</td>
<td>SRP020355</td>
<td align="right">23682854</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>E4BP4</td>
<td>Transcription factor</td>
<td>ZT22</td>
<td>GSE59486</td>
<td>SRP044381</td>
<td align="right">25416951</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>SMRT</td>
<td>Transcription factor</td>
<td>ZT10,ZT22</td>
<td>GSE51045</td>
<td>SRP030120</td>
<td align="right">24268577</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>SRC-2</td>
<td>Transcription factor</td>
<td>ZT4,ZT18</td>
<td>GSE53039</td>
<td>SRP033545</td>
<td align="right">24529706</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>SREBP1</td>
<td>Transcription factor</td>
<td>ZT2,ZT6,ZT10,ZT14,ZT18,ZT22</td>
<td>GSE48375</td>
<td>SRP026395</td>
<td align="right">24603613</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>Usf1</td>
<td>Transcription factor</td>
<td>-</td>
<td>GSE44609</td>
<td>SRP018829</td>
<td align="right">23580255</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>H3K27ac</td>
<td>Histone modification</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>H3K27ac</td>
<td>Histone modification</td>
<td>CT0,CT3,CT6,CT9,CT12,CT15,CT18,CT21</td>
<td>-</td>
<td>SRP004162 </td>
<td align="right">23217262</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>H3K36me3</td>
<td>Histone modification</td>
<td>ZT2,ZT6,ZT10,ZT14,ZT18,ZT22,ZT26</td>
<td>GSE35788</td>
<td>SRP010910</td>
<td align="right">23209382</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>H3K36me3</td>
<td>Histone modification</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>H3K4me1</td>
<td>Histone modification</td>
<td>CT0,CT4,CT8,CT12,CT16,CT20</td>
<td>GSE39977</td>
<td>SRP014752</td>
<td align="right">22936566</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>
<td>H3K4me1</td>
<td>Histone modification</td>
<td>CT3,CT9,CT15,CT21</td>
<td>-</td>
<td>SRP004162 </td>
<td align="right">23217262</td>
</tr>
<tr>
<td>Mouse</td>
<td>Liver</td>