diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 22d67d9df2..f1f65bd865 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.3.4
+    rev: v0.3.5
     hooks:
     -   id: ruff
         types_or: [python, pyi, jupyter]
@@ -13,7 +13,7 @@ repos:
         types_or: [python, pyi, jupyter]
         args: ["--preview", "--select=PLR0917"]
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
     -   id: trailing-whitespace
         exclude: scanpy/tests/_data