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关于wf-pore-c的输出结果 #11

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sh0rt2l0ng opened this issue Jan 9, 2025 · 1 comment

sh0rt2l0ng commented Jan 9, 2025

想确认下是否CPhasing能否接收wf-pore-c输出的paired end bam作为输入？还是说只能从fastq开始？谢谢。

Owner

wangyibin commented Jan 9, 2025 •

edited

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你好，如果这个bam文件的read ID 是配对(两行两行的排列），你可以尝试一下将bam 文件转成pairs.gz 文件

cphasing bam2pairs paired.bam -o output.pairs.gz

然后使用pipeline的 -prs 参数输入互作数据。

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