v2.1.1

A broad overview of what has changed...

Technical

• Dramatically speed up tests
• Nonlinear polynomial and edge intersecting grains.
• Set scale for cropped grains.
• Various improvements of tests.
• Refactoring of DNATracing to process individual grains rather than the whole image.

User Facing

• User facing channel names have been updated.
• Introduces images statistics in addition to grains statistics.
• DNA traces are now overlaid on plots

In Detail...

• Sylvia whittle/550 replace imghdr by @SylviaWhittle in #579
• Sylvia whittle/486 area unit tests by @SylviaWhittle in #578
• Quotes around installation of extra requirements by @ns-rse in #586
• Sylvia whittle/582 channel not found by @SylviaWhittle in #587
• Make channel a free text field by @SylviaWhittle in #590
• Include comments in config files generated with --create-config-file by @SylviaWhittle in #588
• Sylvia whittle/581 group plots by dir by @SylviaWhittle in #584
• Adds unit-tests for dnatracing methods by @ns-rse in #593
• Fixing tpyo's adding in image by @ns-rse in #599
• Improves processing of multiple grains during dnatracing by @ns-rse in #600
• Sylvia whittle/ 517 swiss army knife by @SylviaWhittle in #540
• Fix typo "contour_lengths" -> "contour_length" by @SylviaWhittle in #603
• Sylvia whittle/596 zscale grains by @SylviaWhittle in #597
• [pre-commit.ci] pre-commit-autoupdate by @pre-commit-ci in #602
• Correcting padding of test grains for tracing by @ns-rse in #609
• Sylvia whittle/plotting traces new by @SylviaWhittle in #611
• Sylvia whittle/image stats by @SylviaWhittle in #556
• [pre-commit.ci] pre-commit-autoupdate by @pre-commit-ci in #614
• [pre-commit.ci] pre-commit-autoupdate by @pre-commit-ci in #618
• Update notebooks to fix dnatracing issue by @SylviaWhittle in #625
• Updating CITATION.cff by @ns-rse in #623
• User facing channel names swapped for bts channel names by @derollins in #622
• Nonlinear polynomial and edge intersecting grains by @SylviaWhittle in #626
• Add parameter for test_trace_mask for pad_width = 2 by @ns-rse in #628
• Sylvia whittle/601 further modularisation by @SylviaWhittle in #613
• Adds pytest exts to dev dependencies; disables some pytest warnings by @ns-rse in #635
• Speed up tests by @SylviaWhittle in #633
• [pre-commit.ci] pre-commit-autoupdate by @pre-commit-ci in #637

Full Changelog: v2.1.0...v2.1.1