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Collapse classes for Molecule#766

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BradyAJohnston wants to merge 26 commits intomainBradyAJohnston/MolecularNodes:mainfrom collapse-classesBradyAJohnston/MolecularNodes:collapse-classesCopy head branch name to clipboard

+2,443-4,336

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Commits on Feb 28, 2025

• initial working import from PDB

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  48e15eb

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• cleanup

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  2e3bcfb

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• 3/4 tests working

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  d34e2a9

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Commits on Mar 3, 2025

• cleanup and fixing tests

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  b2ec07e

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• fix centering

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  298c7b2

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• move functions to staticmethods assoc. with reader

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  4678a52

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• cleanup pdbx reader

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Commits on Mar 6, 2025

• refactor maybe messed it up

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  f2b477e

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Commits on Mar 7, 2025

• attribute tests working

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• more tests passing

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  c8b1a2e

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• ops tests passing

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  2489ad8

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• fix load tests

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  1c544f4

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• can't figure out entity_ids

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  97e20fa

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• almost all tests passing

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  89b6c61

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• more tests working!!

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  c2f775d

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• everything except cellpack passing

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• everything except cellpack

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• temp drop cellpack tests

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Commits on Mar 8, 2025

• add comment

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Commits on Mar 9, 2025

• enforce _compute attribute data types

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• lock databpy>0.0.16

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• fix cellpack tests

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• Merge branch 'main' into collapse-classes

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  3d6947d

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• fix tests

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  2edb9d7

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• fix test load

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  d4ec6e8

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• maybe fix windows tests

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