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Code reproduction for the paper: Analyzing RNA-Seq Gene Expression Data Using Deep Learning Approaches for Cancer Classification.

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Analyzing-RNA-Seq-Gene-Expression-Data-Using-Deep-Learning-Approaches-for-Cancer-Classification

Code reproduction for the paper:

Analyzing RNA-Seq Gene Expression Data Using Deep Learning Approaches for Cancer Classification

Reproduction result

Code Repdocution Original
Model Precision Recall F1-Score Accuracy Model Accuracy
CNN 0.8564 0.8872 0.8658 0.9183 CNN 0.9695
AlexNet 0.877 0.9028 0.8824 0.9375 AlexNet 0.931
GoogleNet 0.8982 0.8916 0.8897 0.9362 GoogleNet 0.9586
VGG16 0.9377 0.913 0.9219 0.9567 VGG16 0.9287
VGG19 0.9541 0.9076 0.9061 0.9138 VGG19 0.9109
ResNet50 0.9688 0.9466 0.9691 0.9295 ResNet50 0.9671
ResNet101 0.899 0.9278 0.9055 0.9537 ResNet101 0.9539
ResNet152 0.8485 0.8525 0.8502 0.9103 ResNet152 0.9478

Example visualization

Add Grad CAM to visualize the RNA feature.

image-20231204205115253

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Code reproduction for the paper: Analyzing RNA-Seq Gene Expression Data Using Deep Learning Approaches for Cancer Classification.

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