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github-action committed Feb 13, 2025
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73 changes: 73 additions & 0 deletions log-files/2025-02-12_21-17-58/Test1D3DLinearEllipticSolver_valgrind.txt
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==25082== Memcheck, a memory error detector
==25082== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25082== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25082== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==25082== Parent PID: 24057
==25082==
==25082==
==25082== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25082== Open file descriptor 12:
==25082== at 0x84EF07D: pipe (pipe.c:29)
==25082== by 0x104DE07D: ???
==25082== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25082== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25082== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25082== by 0x6AB4D38: PetscInitialize (pinit.c:924)
==25082== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25082== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25082== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25082== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25082== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25082== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25082== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25082== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25082==
==25082== Open file descriptor 8: /dev/shm/open_mpi.0000
==25082== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39)
==25082== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25082== by 0x7D49822: ???
==25082== by 0x7D4996F: ???
==25082== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25082== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25082== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25082== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25082== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25082== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25082== by 0x6AB4D38: PetscInitialize (pinit.c:924)
==25082== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25082== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25082== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25082== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25082== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25082== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25082== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25082== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25082==
==25082== Open file descriptor 158:
==25082== <inherited from parent>
==25082==
==25082== Open file descriptor 155:
==25082== <inherited from parent>
==25082==
==25082== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==25082== <inherited from parent>
==25082==
==25082== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25082== <inherited from parent>
==25082==
==25082==
==25082== HEAP SUMMARY:
==25082== in use at exit: 618,274 bytes in 8,238 blocks
==25082== total heap usage: 51,119 allocs, 42,881 frees, 1,339,259,114 bytes allocated
==25082==
==25082== LEAK SUMMARY:
==25082== definitely lost: 0 bytes in 0 blocks
==25082== indirectly lost: 0 bytes in 0 blocks
==25082== possibly lost: 0 bytes in 0 blocks
==25082== still reachable: 24 bytes in 2 blocks
==25082== suppressed: 618,250 bytes in 8,236 blocks
==25082== Reachable blocks (those to which a pointer was found) are not shown.
==25082== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25082==
==25082== For lists of detected and suppressed errors, rerun with: -s
==25082== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
73 changes: 73 additions & 0 deletions log-files/2025-02-12_21-17-58/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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==43876== Memcheck, a memory error detector
==43876== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==43876== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==43876== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==43876== Parent PID: 24057
==43876==
==43876==
==43876== FILE DESCRIPTORS: 9 open (3 std) at exit.
==43876== Open file descriptor 12:
==43876== at 0xA7CE07D: pipe (pipe.c:29)
==43876== by 0x1432F07D: ???
==43876== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43876== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43876== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43876== by 0xAB57D38: PetscInitialize (pinit.c:924)
==43876== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43876== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43876== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43876== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43876== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43876== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43876== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43876== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43876==
==43876== Open file descriptor 8: /dev/shm/open_mpi.0000
==43876== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39)
==43876== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==43876== by 0xA0F5822: ???
==43876== by 0xA0F596F: ???
==43876== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43876== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43876== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43876== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43876== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43876== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43876== by 0xAB57D38: PetscInitialize (pinit.c:924)
==43876== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43876== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43876== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43876== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43876== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43876== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43876== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43876== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43876==
==43876== Open file descriptor 158:
==43876== <inherited from parent>
==43876==
==43876== Open file descriptor 155:
==43876== <inherited from parent>
==43876==
==43876== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==43876== <inherited from parent>
==43876==
==43876== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==43876== <inherited from parent>
==43876==
==43876==
==43876== HEAP SUMMARY:
==43876== in use at exit: 618,761 bytes in 8,244 blocks
==43876== total heap usage: 319,601 allocs, 311,357 frees, 1,398,098,971 bytes allocated
==43876==
==43876== LEAK SUMMARY:
==43876== definitely lost: 0 bytes in 0 blocks
==43876== indirectly lost: 0 bytes in 0 blocks
==43876== possibly lost: 0 bytes in 0 blocks
==43876== still reachable: 24 bytes in 2 blocks
==43876== suppressed: 618,737 bytes in 8,242 blocks
==43876== Reachable blocks (those to which a pointer was found) are not shown.
==43876== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43876==
==43876== For lists of detected and suppressed errors, rerun with: -s
==43876== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34)
73 changes: 73 additions & 0 deletions log-files/2025-02-12_21-17-58/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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Original file line number Diff line number Diff line change
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==26319== Memcheck, a memory error detector
==26319== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26319== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26319== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26319== Parent PID: 24057
==26319==
==26319==
==26319== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26319== Open file descriptor 12:
==26319== at 0xF80107D: pipe (pipe.c:29)
==26319== by 0x196B407D: ???
==26319== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26319== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26319== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26319== by 0x1012FD38: PetscInitialize (pinit.c:924)
==26319== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26319== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26319== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26319== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26319== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26319== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26319== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26319== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26319==
==26319== Open file descriptor 8: /dev/shm/open_mpi.0000
==26319== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39)
==26319== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26319== by 0xF144822: ???
==26319== by 0xF14496F: ???
==26319== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26319== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26319== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26319== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26319== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26319== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26319== by 0x1012FD38: PetscInitialize (pinit.c:924)
==26319== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26319== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26319== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26319== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26319== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26319== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26319== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26319== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26319==
==26319== Open file descriptor 158:
==26319== <inherited from parent>
==26319==
==26319== Open file descriptor 155:
==26319== <inherited from parent>
==26319==
==26319== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26319== <inherited from parent>
==26319==
==26319== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26319== <inherited from parent>
==26319==
==26319==
==26319== HEAP SUMMARY:
==26319== in use at exit: 618,370 bytes in 8,239 blocks
==26319== total heap usage: 1,124,535 allocs, 1,116,296 frees, 1,415,928,852 bytes allocated
==26319==
==26319== LEAK SUMMARY:
==26319== definitely lost: 0 bytes in 0 blocks
==26319== indirectly lost: 0 bytes in 0 blocks
==26319== possibly lost: 0 bytes in 0 blocks
==26319== still reachable: 56 bytes in 3 blocks
==26319== suppressed: 618,314 bytes in 8,236 blocks
==26319== Reachable blocks (those to which a pointer was found) are not shown.
==26319== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26319==
==26319== For lists of detected and suppressed errors, rerun with: -s
==26319== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2025-02-12_21-17-58/TestAbstractAnalyticJacobian_valgrind.txt
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==25007== Memcheck, a memory error detector
==25007== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25007== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25007== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==25007== Parent PID: 24057
==25007==
==25007==
==25007== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25007== Open file descriptor 12:
==25007== at 0x4F1007D: pipe (pipe.c:29)
==25007== by 0xB1E607D: ???
==25007== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25007== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25007== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25007== by 0x5308D38: PetscInitialize (pinit.c:924)
==25007== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25007== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25007== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25007== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25007== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25007== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25007== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25007== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==25007==
==25007== Open file descriptor 8: /dev/shm/open_mpi.0000
==25007== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39)
==25007== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25007== by 0x4B7C822: ???
==25007== by 0x4B7C96F: ???
==25007== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25007== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25007== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25007== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25007== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25007== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25007== by 0x5308D38: PetscInitialize (pinit.c:924)
==25007== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25007== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25007== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25007== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25007== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25007== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25007== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25007== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==25007==
==25007== Open file descriptor 158:
==25007== <inherited from parent>
==25007==
==25007== Open file descriptor 155:
==25007== <inherited from parent>
==25007==
==25007== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==25007== <inherited from parent>
==25007==
==25007== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25007== <inherited from parent>
==25007==
==25007==
==25007== HEAP SUMMARY:
==25007== in use at exit: 617,938 bytes in 8,238 blocks
==25007== total heap usage: 45,031 allocs, 36,793 frees, 1,338,170,476 bytes allocated
==25007==
==25007== LEAK SUMMARY:
==25007== definitely lost: 0 bytes in 0 blocks
==25007== indirectly lost: 0 bytes in 0 blocks
==25007== possibly lost: 0 bytes in 0 blocks
==25007== still reachable: 24 bytes in 2 blocks
==25007== suppressed: 617,914 bytes in 8,236 blocks
==25007== Reachable blocks (those to which a pointer was found) are not shown.
==25007== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25007==
==25007== For lists of detected and suppressed errors, rerun with: -s
==25007== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
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