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github-action committed Mar 4, 2025
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73 changes: 73 additions & 0 deletions log-files/2025-03-03_20-46-58/Test1D3DLinearEllipticSolver_valgrind.txt
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==25117== Memcheck, a memory error detector
==25117== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25117== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25117== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==25117== Parent PID: 24069
==25117==
==25117==
==25117== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25117== Open file descriptor 12:
==25117== at 0x84EF07D: pipe (pipe.c:29)
==25117== by 0x104DE07D: ???
==25117== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25117== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25117== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25117== by 0x6AB4D38: PetscInitialize (pinit.c:924)
==25117== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25117== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25117== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25117== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25117== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25117== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25117== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25117== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25117==
==25117== Open file descriptor 8: /dev/shm/open_mpi.0000
==25117== at 0x84F3A1C: __open_nocancel (open64_nocancel.c:39)
==25117== by 0x8477BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25117== by 0x7D44822: ???
==25117== by 0x7D4496F: ???
==25117== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25117== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25117== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25117== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25117== by 0x8B54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25117== by 0x8AEDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25117== by 0x6AB4D38: PetscInitialize (pinit.c:924)
==25117== by 0x698B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25117== by 0x698B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25117== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25117== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25117== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25117== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25117== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25117== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25117==
==25117== Open file descriptor 158:
==25117== <inherited from parent>
==25117==
==25117== Open file descriptor 155:
==25117== <inherited from parent>
==25117==
==25117== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==25117== <inherited from parent>
==25117==
==25117== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25117== <inherited from parent>
==25117==
==25117==
==25117== HEAP SUMMARY:
==25117== in use at exit: 618,258 bytes in 8,238 blocks
==25117== total heap usage: 51,120 allocs, 42,882 frees, 1,339,273,722 bytes allocated
==25117==
==25117== LEAK SUMMARY:
==25117== definitely lost: 0 bytes in 0 blocks
==25117== indirectly lost: 0 bytes in 0 blocks
==25117== possibly lost: 0 bytes in 0 blocks
==25117== still reachable: 24 bytes in 2 blocks
==25117== suppressed: 618,234 bytes in 8,236 blocks
==25117== Reachable blocks (those to which a pointer was found) are not shown.
==25117== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25117==
==25117== For lists of detected and suppressed errors, rerun with: -s
==25117== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
73 changes: 73 additions & 0 deletions log-files/2025-03-03_20-46-58/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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Original file line number Diff line number Diff line change
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==44035== Memcheck, a memory error detector
==44035== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==44035== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==44035== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==44035== Parent PID: 24069
==44035==
==44035==
==44035== FILE DESCRIPTORS: 9 open (3 std) at exit.
==44035== Open file descriptor 12:
==44035== at 0xA7CE07D: pipe (pipe.c:29)
==44035== by 0x1432F07D: ???
==44035== by 0xFB364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==44035== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==44035== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==44035== by 0xAB57D38: PetscInitialize (pinit.c:924)
==44035== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==44035== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==44035== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==44035== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==44035== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==44035== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==44035== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==44035== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==44035==
==44035== Open file descriptor 8: /dev/shm/open_mpi.0000
==44035== at 0xA7D2A1C: __open_nocancel (open64_nocancel.c:39)
==44035== by 0xA756BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==44035== by 0xA0F0822: ???
==44035== by 0xA0F096F: ???
==44035== by 0xFBDB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==44035== by 0xFBDB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==44035== by 0xFB91922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==44035== by 0xFB362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==44035== by 0xBEC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==44035== by 0xBE60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==44035== by 0xAB57D38: PetscInitialize (pinit.c:924)
==44035== by 0xA0B51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==44035== by 0xA0B5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==44035== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==44035== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==44035== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==44035== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==44035== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==44035== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==44035==
==44035== Open file descriptor 158:
==44035== <inherited from parent>
==44035==
==44035== Open file descriptor 155:
==44035== <inherited from parent>
==44035==
==44035== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==44035== <inherited from parent>
==44035==
==44035== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==44035== <inherited from parent>
==44035==
==44035==
==44035== HEAP SUMMARY:
==44035== in use at exit: 618,745 bytes in 8,244 blocks
==44035== total heap usage: 319,599 allocs, 311,355 frees, 1,398,113,110 bytes allocated
==44035==
==44035== LEAK SUMMARY:
==44035== definitely lost: 0 bytes in 0 blocks
==44035== indirectly lost: 0 bytes in 0 blocks
==44035== possibly lost: 0 bytes in 0 blocks
==44035== still reachable: 24 bytes in 2 blocks
==44035== suppressed: 618,721 bytes in 8,242 blocks
==44035== Reachable blocks (those to which a pointer was found) are not shown.
==44035== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==44035==
==44035== For lists of detected and suppressed errors, rerun with: -s
==44035== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 31)
73 changes: 73 additions & 0 deletions log-files/2025-03-03_20-46-58/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==26348== Memcheck, a memory error detector
==26348== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26348== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26348== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26348== Parent PID: 24069
==26348==
==26348==
==26348== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26348== Open file descriptor 12:
==26348== at 0xF84807D: pipe (pipe.c:29)
==26348== by 0x196FB07D: ???
==26348== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26348== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26348== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26348== by 0x10176D38: PetscInitialize (pinit.c:924)
==26348== by 0xF14B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26348== by 0xF14B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26348== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26348== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26348== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26348== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26348== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26348== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26348==
==26348== Open file descriptor 8: /dev/shm/open_mpi.0000
==26348== at 0xF84CA1C: __open_nocancel (open64_nocancel.c:39)
==26348== by 0xF7D0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26348== by 0xF186822: ???
==26348== by 0xF18696F: ???
==26348== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26348== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26348== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26348== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26348== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26348== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26348== by 0x10176D38: PetscInitialize (pinit.c:924)
==26348== by 0xF14B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26348== by 0xF14B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26348== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26348== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26348== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26348== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26348== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26348== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26348==
==26348== Open file descriptor 158:
==26348== <inherited from parent>
==26348==
==26348== Open file descriptor 155:
==26348== <inherited from parent>
==26348==
==26348== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26348== <inherited from parent>
==26348==
==26348== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26348== <inherited from parent>
==26348==
==26348==
==26348== HEAP SUMMARY:
==26348== in use at exit: 618,354 bytes in 8,239 blocks
==26348== total heap usage: 1,124,506 allocs, 1,116,267 frees, 1,415,941,706 bytes allocated
==26348==
==26348== LEAK SUMMARY:
==26348== definitely lost: 0 bytes in 0 blocks
==26348== indirectly lost: 0 bytes in 0 blocks
==26348== possibly lost: 0 bytes in 0 blocks
==26348== still reachable: 56 bytes in 3 blocks
==26348== suppressed: 618,298 bytes in 8,236 blocks
==26348== Reachable blocks (those to which a pointer was found) are not shown.
==26348== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26348==
==26348== For lists of detected and suppressed errors, rerun with: -s
==26348== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2025-03-03_20-46-58/TestAbstractAnalyticJacobian_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==25027== Memcheck, a memory error detector
==25027== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25027== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25027== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==25027== Parent PID: 24069
==25027==
==25027==
==25027== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25027== Open file descriptor 12:
==25027== at 0x4F1007D: pipe (pipe.c:29)
==25027== by 0xB1E607D: ???
==25027== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25027== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25027== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25027== by 0x5308D38: PetscInitialize (pinit.c:924)
==25027== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25027== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25027== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25027== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25027== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25027== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25027== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25027== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==25027==
==25027== Open file descriptor 8: /dev/shm/open_mpi.0000
==25027== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39)
==25027== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25027== by 0x4B77822: ???
==25027== by 0x4B7796F: ???
==25027== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25027== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25027== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25027== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25027== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25027== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25027== by 0x5308D38: PetscInitialize (pinit.c:924)
==25027== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25027== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25027== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25027== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25027== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25027== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25027== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25027== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==25027==
==25027== Open file descriptor 158:
==25027== <inherited from parent>
==25027==
==25027== Open file descriptor 155:
==25027== <inherited from parent>
==25027==
==25027== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==25027== <inherited from parent>
==25027==
==25027== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25027== <inherited from parent>
==25027==
==25027==
==25027== HEAP SUMMARY:
==25027== in use at exit: 617,906 bytes in 8,238 blocks
==25027== total heap usage: 45,029 allocs, 36,791 frees, 1,338,184,380 bytes allocated
==25027==
==25027== LEAK SUMMARY:
==25027== definitely lost: 0 bytes in 0 blocks
==25027== indirectly lost: 0 bytes in 0 blocks
==25027== possibly lost: 0 bytes in 0 blocks
==25027== still reachable: 24 bytes in 2 blocks
==25027== suppressed: 617,882 bytes in 8,236 blocks
==25027== Reachable blocks (those to which a pointer was found) are not shown.
==25027== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25027==
==25027== For lists of detected and suppressed errors, rerun with: -s
==25027== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)
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