ChipStream 0.6.4

This is a maintenance release with added support for new DC table data.

• setup: bump dcnum from 0.25.3 to 0.25.5

ChipStream 0.6.3

This is essentially a maintenance release.

• ref: use dcnum methods to set environment variables for single threads
• setup: bump dcnum from 0.25.2 to 0.25.3

ChipStream 0.6.2

This release supports numpy 2 and comes with minor speed-ups inherited from dcnum 0.25.2.

• docs: fix typo in CLI help page
• setup: bump dcnum from 0.25.0 to 0.25.2 (minor speed-up)
• setup: support numpy 2

ChipStream 0.6.1

• enh: automatically detect flickering and apply offset correction
• setup: bump dcnum from 0.24.0 to 0.25.0 (flickering detection)

ChipStream 0.6.0

• feat: implement segmenter validation step in CLI and GUI
• feat: support PyTorch segmentation models
• fix: show correct default mask postprocessing arguments in CLI help
• setup: bump dcnum from 0.22.1 to 0.24.0 (internal basins)
• setup: change required pytorch version from 2.3 to 2.2 (hardware support)

ChipStream 0.6.0a4

• maintenance

ChipStream 0.6.0a3

• feat: dcnum 0.24.0 introduces internal basins

ChipStream 0.6.0a2

• feat: implement segmenter validation step in CLI and GUI
• feat: support PyTorch segmentation models
• fix: show correct default mask postprocessing arguments in CLI help
• setup: bump dcnum from 0.22.1 to 0.23.3
• setup: change required pytorch version from 2.3 to 2.2 (hardware support)

ChipStream 0.5.0

With an update of dcnum to version 0.22.1, this release improves efficiency and stability.

ChipStream 0.4.0

This release brings the power of basin features to ChipStream. By default, the output file is now a downstream dataset that uses the input file as a basin. As a result, pipeline runs are faster and output files are significantly smaller. To disable this feature, uncheck the "Exploit basins" checkbox in the GUI or use the "--drain-basins" option in the CLI.

• feat: CLI by default creates output file that contains no redundant
  data and uses the input file as a basin; old behavior can be brought
  back with the "--drain-basins" command-line option
• feat: implement same behavior for GUI as for CLI, with the
  "Exploit basins" checkbox
• fix: show correct data PPID in CLI
• setup: bump dcnum from 0.19.1 to 0.20.1
• docs: add tool tips for most controls