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Release 0.3.5
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54 changes: 27 additions & 27 deletions docs/dataset.html
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Expand Up @@ -27,7 +27,7 @@ <h1 class="title">Module <code>mogptk.dataset</code></h1>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L1-L725" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L1-L725" class="git-link">Browse git</a>
</summary>
<pre><code class="python">import copy

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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L10-L33" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L10-L33" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def LoadCSV(filename, x_col=0, y_col=1, y_err_col=None, name=None, **kwargs):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L35-L128" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L35-L128" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def LoadDataFrame(df, x_col=0, y_col=1, y_err_col=None, name=None):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L134-L725" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L134-L725" class="git-link">Browse git</a>
</summary>
<pre><code class="python">class DataSet:
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L310-L326" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L310-L326" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def aggregate(self, duration, f=np.mean):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L238-L262" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L238-L262" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def append(self, arg):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L264-L274" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L264-L274" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def copy(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L293-L308" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L293-L308" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def filter(self, start, end, dim=None):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L380-L400" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L380-L400" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get(self, index):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L590-L615" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L590-L615" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_bnse_estimation(self, Q=1, n=1000, iters=200):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L424-L438" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L424-L438" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_data(self, transformed=False):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L402-L422" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L402-L422" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_index(self, index):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L341-L352" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L341-L352" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_input_dims(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L564-L588" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L564-L588" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_ls_estimation(self, Q=1, n=10000):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L367-L378" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L367-L378" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_names(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L552-L562" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L552-L562" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_nyquist_estimation(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L354-L365" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L354-L365" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_output_dims(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L472-L485" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L472-L485" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_prediction_data(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L617-L644" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L617-L644" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_sm_estimation(self, Q=1, method=&#39;BNSE&#39;, optimizer=&#39;Adam&#39;, iters=200, params={}):
&#34;&#34;&#34;
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L456-L470" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L456-L470" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_test_data(self, transformed=False):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L440-L454" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L440-L454" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def get_train_data(self, transformed=False):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L328-L339" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L328-L339" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def has_test_data(self):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L646-L686" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L646-L686" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def plot(self, pred=None, title=None, figsize=None, legend=True, transformed=False):
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L688-L725" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L688-L725" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def plot_spectrum(self, title=None, method=&#39;ls&#39;, per=None, maxfreq=None, figsize=None, log=False, transformed=True, n=1001):
&#34;&#34;&#34;
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L487-L509" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L487-L509" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def set_prediction_data(self, X):
&#34;&#34;&#34;
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L511-L550" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L511-L550" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def set_prediction_range(self, start, end, n=None, step=None):
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<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/dataset.py#L276-L291" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/dataset.py#L276-L291" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def transform(self, transformer):
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<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L1-L73" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/gpr/config.py#L1-L73" class="git-link">Browse git</a>
</summary>
<pre><code class="python">import torch

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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L54-L67" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/gpr/config.py#L54-L67" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def print_gpu_information():
&#34;&#34;&#34;
Expand All @@ -145,7 +145,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L69-L73" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/gpr/config.py#L69-L73" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def set_positive_minimum(val):
&#34;&#34;&#34;
Expand All @@ -162,7 +162,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L32-L39" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/gpr/config.py#L32-L39" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_cpu(n=None):
&#34;&#34;&#34;
Expand All @@ -182,7 +182,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L26-L30" class="git-link">Browse git</a>
<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/gpr/config.py#L26-L30" class="git-link">Browse git</a>
</summary>
<pre><code class="python">def use_double_precision():
&#34;&#34;&#34;
Expand All @@ -199,7 +199,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
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<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L41-L52" class="git-link">Browse git</a>
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</summary>
<pre><code class="python">def use_gpu(n=None):
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Expand All @@ -223,7 +223,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L12-L18" class="git-link">Browse git</a>
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</summary>
<pre><code class="python">def use_half_precision():
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Expand All @@ -242,7 +242,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
<details class="source">
<summary>
<span>Expand source code</span>
<a href="https://github.com/GAMES-UChile/mogptk/blob/ffda2673522bbb262da689dc03dec417488d73b4/mogptk/gpr/config.py#L20-L24" class="git-link">Browse git</a>
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</summary>
<pre><code class="python">def use_single_precision():
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Expand All @@ -264,7 +264,7 @@ <h2 class="section-title" id="header-classes">Classes</h2>
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<summary>
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<a href="https://github.com/GAMES-UChile/mogptk/blob/1bac0bbc7ed5677e52571f98dafdf5267683a5ad/mogptk/gpr/config.py#L3-L9" class="git-link">Browse git</a>
</summary>
<pre><code class="python">class Config:
dtype = torch.float32
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2 changes: 1 addition & 1 deletion docs/gpr/index.html
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Expand Up @@ -27,7 +27,7 @@ <h1 class="title">Module <code>mogptk.gpr</code></h1>
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</summary>
<pre><code class="python">from .config import *
from .plot import plot_gram
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