Release v3.0.2

Hello all,
This release mostly has small bugfixes and minor improvements

• Fix for some CRAM files that use "archival" bzip2 codecs
• Change multi-variant viewer to use a blue color for the "major ALT allele" rather than just ALT===1
• Use assembly "displayName" in view headers
• Group transcripts from GTF files into gene level features
• Improved ?hubURL behavior to load defaultLocation, assembly names
• Handle random color generation for >10 categories in the multi-variant viewer

Check out our year in review post also https://jbrowse.org/jb2/blog/2025/02/13/yearinreview/

3.0.2 (2025-02-13)

🚀 Enhancement

• core
  • #4834 Update ReExports for @jbrowse/core/BaseFeatureDetails (@cmdcolin)
  • #4818 Improve status updating for BamAdapter, CramAdapter (@cmdcolin)
  • #4811 Improvements to the sesson/config warning dialogs (@cmdcolin)
• Other
  • #4829 Less gappyness at SVG features block boundaries (@cmdcolin)
  • #4828 Additional ?hubURL compat (@cmdcolin)
  • #4827 Improve status updating for BedTabixAdapter, Gff3TabixAdapter, VcfTabixAdapter, BigBedAdapter (@cmdcolin)
  • #4825 Handle multiple jobs with the same name (@garrettjstevens)
  • #4826 Calculate most frequent non-ref allele for multi-variant renderer (@cmdcolin)
  • #4824 Aggregate transcript level features in GTF based on "gene_name" field (@cmdcolin)
  • #4810 Ensure embedded users get the latest semver @gmod/vcf for multi-variant fixes (@cmdcolin)
• app-core, core
  • #4819 Use assembly "displayName" field on View titles (@cmdcolin)

🐛 Bug Fix

• sv-core
  • #4837 Update @gmod/cram for fixed decoding of some CRAM files (@cmdcolin)
• Other
  • #4808 Fix random palette color generation for multi-variant colors (@cmdcolin)

📝 Documentation

• #4838 2024 year in review blog post (@cmdcolin)

🏠 Internal

• #4835 Move plugin devtools to it's own repo (@cmdcolin)

Committers: 2

• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens) Done in 1.91s.
  Done in 0.47s.