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@GrotjahnLab

Grotjahn Lab

The Grotjahn lab at Scripps Research uses cryo-electron tomography to investigate mitochondrial function and regulation.

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  1. surface_morphometrics surface_morphometrics Public

    Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.

    Python 22 11

  2. guided_tomo_align guided_tomo_align Public

    Scripts for using references aligned to particles in 3D subvolumes in Chimera sessions for alignment

    Python 6

  3. GrotjahnLab.github.io GrotjahnLab.github.io Public

    Grotjahn Lab Website

    HTML 2 3

Repositories

Showing 10 of 12 repositories
  • co-translating_ribosome_scripts Public

    Python codes related to the analysis of co-translating ribosomes on outer mitochondrial membrane

    GrotjahnLab/co-translating_ribosome_scripts’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jan 23, 2025
  • surface_morphometrics Public

    Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.

    GrotjahnLab/surface_morphometrics’s past year of commit activity
    Python 22 GPL-3.0 11 3 0 Updated Jan 16, 2025
  • GrotjahnLab.github.io Public

    Grotjahn Lab Website

    GrotjahnLab/GrotjahnLab.github.io’s past year of commit activity
    HTML 2 BSD-3-Clause 3 0 0 Updated Oct 29, 2024
  • tomo-db Public
    GrotjahnLab/tomo-db’s past year of commit activity
    EJS 1 0 0 0 Updated Sep 26, 2024
  • warp_lamella_adapters Public

    A short optimized pipeline to get lamella tomography (with pretilt and with some tilts obscured or mistracked) to work well with Warp

    GrotjahnLab/warp_lamella_adapters’s past year of commit activity
    Python 4 BSD-3-Clause 1 0 1 Updated Dec 20, 2022
  • filament_morphometrics Public

    Morphometrics, Particle Picking, and Guided STA on Cytoskeletal Filaments from CryoET

    GrotjahnLab/filament_morphometrics’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Oct 12, 2022
  • pycurv Public Forked from kalemaria/pycurv

    Reliable estimation of membrane curvature for cryo-electron tomography

    GrotjahnLab/pycurv’s past year of commit activity
    Python 0 LGPL-3.0 8 0 0 Updated Apr 27, 2022
  • measure_models Public

    Making measurements between subcellular models from cryoET

    GrotjahnLab/measure_models’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Nov 16, 2021
  • teamtomo.github.io Public Forked from teamtomo/teamtomo-site-archive

    A collaborative knowledge sharing platform for the cryo-ET community

    GrotjahnLab/teamtomo.github.io’s past year of commit activity
    MATLAB 0 BSD-3-Clause 13 0 0 Updated Apr 11, 2021
  • guided_tomo_align Public

    Scripts for using references aligned to particles in 3D subvolumes in Chimera sessions for alignment

    GrotjahnLab/guided_tomo_align’s past year of commit activity
    Python 6 0 0 0 Updated Oct 12, 2020
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