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Running segmentation_to_meshs.py in parallel modify output file names with first processed labels file #21

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mmedina300 opened this issue Dec 2, 2023 · 1 comment
Open

Running segmentation_to_meshs.py in parallel modify output file names with first processed labels file #21

mmedina300 opened this issue Dec 2, 2023 · 1 comment

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@mmedina300
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When running [python segmentation_to_meshes.py config.yml ] the output written files .ply, .surface.vtp, .xyz files are all modified with and ending from the first processed labels file. (Example output file names: *_OMM.labels_OMM.surface.vtp and *_IMM.labels_OMM.surface.vtp.)
This causes an error for following steps because of the modified ending which no longer matches the original .labels.mrc file
@bbarad
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bbarad commented Jun 20, 2024

Is this still happening? Can you provide a dataset that reproduces this bug so I can dig in?

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@bbarad @mmedina300