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T₁ Variability Paper Corresponding Code
unpublished edits

This code reproduces all results in the paper Magnetization transfer explains most of the T1 variability in the MRI literature. Please refer to the [Documentation][docs-url] for a detailed description of the code.

The code is written in the open-source language Julia and is structured as follows:

  • T1_mapping_methods.jl implements the pulse sequence simulations and the mono-exponential fitting routines of each T₁-mapping method.
  • Fit_qMT_to_literatureT1.jl is the main script that performs the fit of the qMT models to the variable literature T₁ estimates.
  • helper_functions.jl contains implementations of RF pulses, their propagators, and some helper functions, which are less relevant for understanding the simulations.
  • Project.toml and Manifest.toml contain information about the packages used by the simulation, facilitating their automated installation.

Julia can be downloaded from https://julialang.org or, on Unix systems, by simply calling

`curl -fsSL https://install.julialang.org | sh`

from the command line.

In order to run the simulations, place all five files in the same folder, cd into this folder, and call

`julia -iq --threads=auto Fit_qMT_to_literatureT1.jl`

For a more interactive interface, the code can be called from Visual Studio Code with the Julia extension.

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