Code

Correct reg aladin values#260

Code

Merged

davidmeunier79 merged 49 commits intoMacatools:masterMacatools/macapype:masterfrom davidmeunier79:correct_reg_aladin_valuesdavidmeunier79/macapype:correct_reg_aladin_valuesCopy head branch name to clipboardMay 22, 2024

+240-117

Commits

Commits on Apr 18, 2024

• node remove_fake_values instead of FSL function for node remove_nans

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  d6ea53d

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• go further in hist

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  08963a0

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• find_peaks

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  eb05a55

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• distance

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  2fdd7a1

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• Xmin

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  e1a0e52

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• *10

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  f8366a6

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• /10

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  98e363e

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• maxima not minima

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  06b3ea6

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• filter and save

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  423dd26

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• and

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  1f331e3

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• bins[peaks[index_peak]]

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  055d636

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• it works !!!

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  5670f05

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Commits on Apr 22, 2024

• changed remove_fake_values to pad biiger and reg_resample...

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  eccb697

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• import pad_zero_mri

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  1522970

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• outputnode

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• testing pad_val = "double"

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• int

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  9526aa2

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• pad_val

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  7b16f04

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• pad_val

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  51021b6

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• op1

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• output_image

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• op2

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• string

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  34982e1

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• working for T1, apply to T2 (in prepare)

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  d8e78fa

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• reg_resample_T2, 'out_file'

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  84a6f13

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• pad_image_T2

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  70d8b60

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Commits on Apr 23, 2024

• if template_files = 2, for no priors

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  b773715

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• no reg /animal_warp if no priors

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  bda11f9

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Commits on Apr 24, 2024

• working on flist average

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  3a968f3

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• no safe casting

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  54969ac

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• ok

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  54620b3

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• if and assert

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  f5c390b

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• bug

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  a57caa8

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• avg_shape

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• nib.load

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• error

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• extra

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  98267c4

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• flake8

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Commits on Apr 25, 2024

• forcing int16 type in average

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• shape

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• aff

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• AFF TRANS

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• ,

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  563d5ea

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Commits on May 13, 2024

• print

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  d0fa8d7

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• k = True

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  7a41e39

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Commits on May 15, 2024

• padval

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Commits on May 16, 2024

• removed k position=3

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• also p

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  33dda11

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Commits on May 21, 2024

• bug crop_z_t1 -> pre_crop_z_t1

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