v0.12.2

v0.12.2 (2023-11-15)

Build

• build(_quality.yaml): removes caching of poetry (a7c20e1)

• build(eyepy): updates versions (23fec54)

• build(eyepy): removes python 3.8 from testing matrix (b2bcf7b)

• build(eyepy): upgrades dependencies (e66fd8b)

Fix

• fix(_release.yaml): corrects python-semantic-release version (f7171ba)

• fix(eyemeta.py): convert dates to string for saving as json (5d715cd)

Refactor

• refactor(eyevolume.py): changes skimage import of GeometricTransform (31ce767)

• refactor(EyeVolume): rename method from remove_pixel_annotations to remove_pixel_annotation (6727a60)

v0.12.1

v0.12.1 (2023-09-26)

Ci

• ci(PythonSemanticRelease): update python semantic release to v8; minor change to README; added support for py3.11; updated dependencies (d4e65a8)

Fix

• fix(vol_reader.py): get number of read layers from file context instead of assuming 17 layers. (2b53a33)

v0.12.0

Breaking

• (8d07a17)

v0.11.3

Fix

• eyepy.io: Fixes duke layer heights import (eb18f2a)

Documentation

• README.md;-cookbook.md: Add examples for importing data from different sources (2a71e11)

v0.11.2

Fix

• EyeVolume: Fix saving, old method sometimes tried to recursively add the archive to the archive (e6064cc)
• import_duke_mat: Fixes age parsing from duke data (ecbcbc2)

v0.11.1

Fix

• EyeVolumeMeta: Fixes saving issue by storing all dates as string in isoformat to avoid problems with dumping to json and loading (3fc7424)

v0.11.0

Feature

• io.init.py: Adds support for topcon fda files (#12) (53f2908)

v0.10.0

Feature

• core.plotting: Adds a scale bar and a watermark to Bscan and Fundus visualizations (0e3eaa0)

Fix

• eyepy.core: Fixes bscan_region and bscan_position plotting when plotting only a part of the fundus (2c88074)
• core.grids.py: Fixes error related to python 3.8 not supporting new type annotation Dict-dict List-list (3c6ba41)

Documentation

• core.annotations: Adds docstrings (236c074)

v0.9.2

Fix

• e2e_reader.py: Makes exception formatting compatible with python < 3.10 (2c4cbb0)

Documentation

• eyepy.core: Adds type annotations to all objects in the core subpackage (ea1cb4c)
• annotations.py: Adds type annotations to all objects in this module (986f9bc)

v0.9.1

Fix

• e2e_reader.py: Extract number of Bscans more reliably by using the number of slice substructures; Skip localizer affine transformation for now, because slodata is not always available; support reading single B-scan data (1287a24)
• e2e_format.py: Change the name of E2EFile to E2EFormat to avoid confustion with E2EFileStructure in e2e_reader.py (01be6a0)

Documentation

• README.md: Clarify that the localizer is a fundus image (4e41acd)