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Development #1161

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merged 2 commits into from
Aug 2, 2024
Merged

Development #1161

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6a518b9
fix: switched to cheminf studio ws API
CS76 Aug 2, 2024
1e2f8e2
fix: switched to cdk for 2d rendering
CS76 Aug 2, 2024
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2 changes: 1 addition & 1 deletion .env.example
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ EUROPEMC_WS_API=https://www.ebi.ac.uk/europepmc/webservices/rest/search
ORCID_ID_SEARCH_API=https://pub.orcid.org/v2.1/search
ORCID_ID_EMPLOYMENT_API=https://pub.orcid.org/v3.0/{orcid_id}/employments
ORCID_ID_PERSON_API=https://pub.orcid.org/v3.0/{orcid_id}/person
CM_API=https://api.naturalproducts.net/latest/
CM_API=https://api.cheminf.studio/latest/
CROSSREF_API=https://api.crossref.org/works/
DATACITE_API=https://api.datacite.org/

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2 changes: 1 addition & 1 deletion app/Console/Commands/SanitizeMolecules.php
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Expand Up @@ -111,7 +111,7 @@ protected function fetchCAS($smiles)
protected function standardizeMolecule($mol)
{
try {
$response = Http::post('https://api.naturalproducts.net/latest/chem/standardize', $mol);
$response = Http::post('https://api.cheminf.studio/latest/chem/standardize', $mol);

return $response->json();
} catch (\Illuminate\Http\Client\ConnectionException $e) {
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2 changes: 1 addition & 1 deletion app/Jobs/ArchiveStudy.php
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Expand Up @@ -196,7 +196,7 @@ public function handle(): void

// protected function standardizeMolecule($mol)
// {
// $response = Http::post('https://dev.api.naturalproducts.net/latest/chem/standardize', $mol);
// $response = Http::post('https://api.cheminf.studio/latest/chem/standardize', $mol);
// return $response->json();
// }

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2 changes: 1 addition & 1 deletion resources/js/Pages/Study/About.vue
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Expand Up @@ -735,7 +735,7 @@ export default {
},
standardizeMolecules(mol) {
return axios.post(
"https://api.naturalproducts.net/latest/chem/standardize",
"https://api.cheminf.studio/latest/chem/standardize",
mol
);
},
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4 changes: 2 additions & 2 deletions resources/js/Pages/Upload.vue
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Expand Up @@ -2519,7 +2519,7 @@ export default {
},
standardizeMolecules(mol) {
return axios.post(
"https://api.naturalproducts.net/latest/chem/standardize",
"https://api.cheminf.studio/latest/chem/standardize",
mol
);
},
Expand Down Expand Up @@ -2547,7 +2547,7 @@ export default {
// convert to smiles
axios
.post(
"https://dev.api.naturalproducts.net/latest/chem/standardize",
"https://api.cheminf.studio/latest/latest/chem/standardize",
response.data
)
.then((res) => {
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2 changes: 1 addition & 1 deletion resources/js/Shared/Depictor2D.vue
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Expand Up @@ -18,7 +18,7 @@
width +
'&CIP=' +
CIP +
'&toolkit=rdkit'
'&toolkit=cdk'
"
alt=""
/>
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2 changes: 1 addition & 1 deletion resources/js/Shared/SpectraEditor.vue
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Expand Up @@ -385,7 +385,7 @@ export default {
mol = this.fixLineError(mol);
axios
.post(
"https://api.naturalproducts.net/latest/chem/standardize",
"https://api.cheminf.studio/latest/chem/standardize",
mol.molfile
)
.then((res) => {
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