fix(ci): source env before running tests

NOEL-MNI · Dec 16, 2024 · 327510f · 327510f
1 parent aff21c2
commit 327510f
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/.github/workflows/test-inference-pipeline.yml b/.github/workflows/test-inference-pipeline.yml
@@ -50,7 +50,10 @@ jobs:
           CI_TESTING_PRED_DIR: "/home/ga/io"
 
       - name: Run tests to compare outputs with previous validated runs
-        run: bash ./tests/run_tests.sh
+        run: |
+          eval "$(micromamba shell hook -s posix)"
+          micromamba activate deepFCD
+          bash ./tests/run_tests.sh
         env:
           CI_TESTING_PATIENT_ID: "sub-00055"
           CI_TESTING_PRED_DIR: "/home/ga/io"