Tracking Software

Nadeau Group: Installing plugins to use with Fiji

• Download/pull the .class files from GitHub corresponding to the desired plugin(s).

There are two ways to import the .class files into Fiji:

Drag and dropping This method allows you to keep the original files while automatically making duplicates to store in the plugins folder under Fiji.app.

1. Drag and drop one or all files into Fiji's GUI

   

   

Directly importing into Fiji's plugins Library This method moves the original files into Fiji.app under its Plugins folder, so it may be best to make duplicates to hold onto before moving files to Fiji.

1. Close/Quit Fiji if it's not closed already (it will have to be closed regardless in order to properly update its plugins library)

2. Locate Fiji's plugins folder. Right click on Fiji.app in your systems files (typically located under Applications), and select 'Show Package Contents':

   

   

3. Restart Fiji

Plugins should now be ready to run and located in the dropdown menu under Plugins - In this example I imported MHI Script and Track ing which are now located here.

<img src="./images/PLUGIN_DROPDOWN_MENU.png" alt="Fiji's Plugin Dropdown Menu" style="height:75vh;"