Merge branch 'main' into issue_117

.flake8

@@ -2,6 +2,8 @@
 ignore =
     # whitespace before ':' (Black)
     E203,
+    # E501 line too long
+    E501,
     # line break before binary operator (Black)
     W503,
 
@@ -25,25 +27,17 @@ per-file-ignores =
     gui/wxpython/image2target/g.gui.image2target.py: E501
     gui/wxpython/photo2image/g.gui.photo2image.py: E501
     gui/wxpython/psmap/*: E501
-    gui/wxpython/vdigit/*: E722, F405, F403
     gui/wxpython/animation/g.gui.animation.py: E501
     gui/wxpython/tplot/g.gui.tplot.py: E501
     gui/wxpython/iclass/g.gui.iclass.py: E501
-    gui/wxpython/mapdisp/main.py: E722
     gui/wxpython/mapdisp/test_mapdisp.py: E501
     gui/wxpython/mapswipe/g.gui.mapswipe.py: E501
-    gui/wxpython/mapwin/base.py: E722
-    gui/wxpython/mapwin/buffered.py: E722
     gui/wxpython/timeline/g.gui.timeline.py: E501
     # Generated file
     gui/wxpython/menustrings.py: E501
     # C wrappers call libgis.G_gisinit before importing other modules.
     # TODO: Is this really needed?
     python/grass/jupyter/__init__.py: E501
-    python/grass/pygrass/vector/__init__.py: E402
-    # Current benchmarks/tests are changing sys.path before import.
-    # Possibly, a different approach should be taken there anyway.
-    python/grass/pygrass/tests/benchmark.py: F821
     # Configuration file for Sphinx:
     # Ignoring import/code mix and line length.
     # Files not managed by Black

.github/workflows/additional_checks.yml

@@ -45,7 +45,7 @@ jobs:
           exclude: mswindows .*\.bat .*/testsuite/data/.*
 
       - name: Set up Python
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: '3.10'
 

.github/workflows/codeql-analysis.yml

@@ -43,7 +43,7 @@ jobs:
       - name: Checkout repository
         uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
       - name: Set up Python
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: '3.x'
       - name: Install non-Python dependencies
@@ -57,7 +57,7 @@ jobs:
         if: ${{ matrix.language == 'c-cpp' }}
 
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@d68b2d4edb4189fd2a5366ac14e72027bd4b37dd # v3.28.2
+        uses: github/codeql-action/init@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           languages: ${{ matrix.language }}
           config-file: ./.github/codeql/codeql-config.yml
@@ -82,6 +82,6 @@ jobs:
         run: .github/workflows/build_ubuntu-22.04.sh "${HOME}/install"
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@d68b2d4edb4189fd2a5366ac14e72027bd4b37dd # v3.28.2
+        uses: github/codeql-action/analyze@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           category: "/language:${{matrix.language}}"

.github/workflows/create_release_draft.yml

@@ -35,7 +35,7 @@ jobs:
           ref: ${{ github.ref }}
           fetch-depth: 0
       - name: Set up Python
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: '3.11'
       - name: Create output directory

.github/workflows/docker.yml

@@ -81,7 +81,7 @@ jobs:
           password: ${{ secrets.DOCKERHUB_TOKEN  }}
       - name: Build and push
         id: docker_build
-        uses: docker/build-push-action@67a2d409c0a876cbe6b11854e3e25193efe4e62d # v6.12.0
+        uses: docker/build-push-action@ca877d9245402d1537745e0e356eab47c3520991 # v6.13.0
         with:
           push: true
           pull: true

.github/workflows/pytest.yml

@@ -37,7 +37,7 @@ jobs:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Set up Python
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: ${{ matrix.python-version }}
           cache: pip
@@ -117,7 +117,7 @@ jobs:
           coverage html
 
       - name: Upload coverage reports to Codecov
-        uses: codecov/codecov-action@1e68e06f1dbfde0e4cefc87efeba9e4643565303 # v5.1.2
+        uses: codecov/codecov-action@13ce06bfc6bbe3ecf90edbbf1bc32fe5978ca1d3 # v5.3.1
         with:
           verbose: true
           flags: pytest-python-${{ matrix.python-version }}

.github/workflows/python-code-quality.yml

@@ -29,16 +29,14 @@ jobs:
       # renovate: datasource=python-version depName=python
       PYTHON_VERSION: "3.13"
       MIN_PYTHON_VERSION: "3.9"
-      # renovate: datasource=pypi depName=black
-      BLACK_VERSION: "24.10.0"
       # renovate: datasource=pypi depName=flake8
       FLAKE8_VERSION: "7.1.1"
       # renovate: datasource=pypi depName=pylint
-      PYLINT_VERSION: "3.3.3"
+      PYLINT_VERSION: "3.3.4"
       # renovate: datasource=pypi depName=bandit
       BANDIT_VERSION: "1.8.2"
       # renovate: datasource=pypi depName=ruff
-      RUFF_VERSION: "0.9.2"
+      RUFF_VERSION: "0.9.4"
 
     runs-on: ${{ matrix.os }}
     permissions:
@@ -59,7 +57,7 @@ jobs:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
 
       - name: Set up Python
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
+        uses: actions/setup-python@42375524e23c412d93fb67b49958b491fce71c38 # v5.4.0
         with:
           python-version: ${{ env.PYTHON_VERSION }}
           cache: pip
@@ -73,6 +71,14 @@ jobs:
         continue-on-error: true
       - name: Run Ruff (apply fixes for suggestions)
         run: ruff check . --preview --fix --unsafe-fixes
+      - name: Run `ruff format` showing diff without failing
+        continue-on-error: true
+        if: ${{ !cancelled() }}
+        run: ruff format --diff
+      - name: Run `ruff format` fixing files
+        # Run `ruff format` even when `ruff check` fixed files: fixes can require formatting
+        if: ${{ !cancelled() }}
+        run: ruff format --diff
       - name: Create and uploads code suggestions to apply for Ruff
         # Will fail fast here if there are changes required
         id: diff-ruff
@@ -84,21 +90,6 @@ jobs:
           # To keep repo's file structure in formatted changes artifact
           extra-upload-changes: pyproject.toml
 
-      - name: Install Black only
-        run: pip install black[jupyter]==${{ env.BLACK_VERSION }}
-
-      - name: Run Black
-        run: black .
-
-      - name: Create and uploads code suggestions to apply for Black
-        # Will fail fast here if there are changes required
-        id: diff-black
-        uses: ./.github/actions/create-upload-suggestions
-        with:
-          tool-name: black
-          # To keep repo's file structure in formatted changes artifact
-          extra-upload-changes: .clang-format
-
       - name: Install non-Python dependencies
         run: |
           sudo apt-get update -y
@@ -137,7 +128,7 @@ jobs:
           path: bandit.sarif
 
       - name: Upload SARIF File into Security Tab
-        uses: github/codeql-action/upload-sarif@d68b2d4edb4189fd2a5366ac14e72027bd4b37dd # v3.28.2
+        uses: github/codeql-action/upload-sarif@dd746615b3b9d728a6a37ca2045b68ca76d4841a # v3.28.8
         with:
           sarif_file: bandit.sarif
 

.gitignore

@@ -1,5 +1,4 @@
 /emacs.desktop
-*~
 *.lock
 !flake.lock
 *.pyc
@@ -68,3 +67,82 @@ lib/*/latex/
 .coverage
 .coverage.*
 coverage.xml
+
+# Created by https://www.toptal.com/developers/gitignore/api/windows,linux,macos
+# Edit at https://www.toptal.com/developers/gitignore?templates=windows,linux,macos
+
+### Linux ###
+*~
+
+# temporary files which can be created if a process still has a handle open of a deleted file
+.fuse_hidden*
+
+# KDE directory preferences
+.directory
+
+# Linux trash folder which might appear on any partition or disk
+.Trash-*
+
+# .nfs files are created when an open file is removed but is still being accessed
+.nfs*
+
+### macOS ###
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+### macOS Patch ###
+# iCloud generated files
+*.icloud
+
+### Windows ###
+# Windows thumbnail cache files
+Thumbs.db
+Thumbs.db:encryptable
+ehthumbs.db
+ehthumbs_vista.db
+
+# Dump file
+*.stackdump
+
+# Folder config file
+[Dd]esktop.ini
+
+# Recycle Bin used on file shares
+$RECYCLE.BIN/
+
+# Windows Installer files
+*.cab
+*.msi
+*.msix
+*.msm
+*.msp
+
+# Windows shortcuts
+*.lnk
+
+# End of https://www.toptal.com/developers/gitignore/api/windows,linux,macos

.pre-commit-config.yaml

@@ -37,24 +37,17 @@ repos:
           )
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.9.2
+    rev: v0.9.4
     hooks:
       # Run the linter.
       - id: ruff
         args: [--fix, --preview]
+      # Run the formatter.
+      - id: ruff-format
   - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.43.0
+    rev: v0.44.0
     hooks:
       - id: markdownlint-fix
-  # Using this mirror lets us use mypyc-compiled black, which is about 2x faster
-  - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 24.10.0
-    hooks:
-      - id: black-jupyter
-        exclude: |
-          (?x)^(
-                python/libgrass_interface_generator/
-          )
   - repo: https://github.com/pycqa/flake8
     rev: 7.1.1
     hooks:

Dockerfile

@@ -1,4 +1,4 @@
-# syntax=docker/dockerfile:1.12@sha256:93bfd3b68c109427185cd78b4779fc82b484b0b7618e36d0f104d4d801e66d25
+# syntax=docker/dockerfile:1.13@sha256:426b85b823c113372f766a963f68cfd9cd4878e1bcc0fda58779127ee98a28eb
 
 # Note: This file must be kept in sync in ./Dockerfile and ./docker/ubuntu/Dockerfile.
 #       Changes to this file must be copied over to the other file.

db/db.describe/testsuite/test_dbdescribe.py

@@ -5,6 +5,7 @@
 
 @author: lucadelu
 """
+
 import json
 
 from grass.gunittest.case import TestCase