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Fix metadata bug in OxenFS write #67

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merged 3 commits into from
Feb 19, 2025
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@jcelliott jcelliott commented Feb 13, 2025

Also document how to save an existing file object using OxenFS and shutil.copyfileobj.

Summary by CodeRabbit

  • Documentation

    • Updated documentation with a new example demonstrating file writing operations.
  • Bug Fixes

    • Improved error handling during file write operations to prevent issues when target directories are missing.
  • Tests

    • Added tests to validate writing files to new directories, ensuring commit accuracy and content integrity.

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coderabbitai bot commented Feb 13, 2025

Walkthrough

The changes update the OxenFS class documentation by adding an example that demonstrates how to use shutil.copyfileobj for file copying. Additionally, error handling in the _open_write method is improved to safely check for directory metadata. A new test function is introduced to verify the functionality of writing a file into a newly created directory, ensuring the commit log and file content are as expected.

Changes

File Change Summary
oxen/.../oxen_fs.py Added an example under "Writing file objects" using shutil.copyfileobj; modified _open_write to check if metadata exists before verifying is_dir.
oxen/.../test_fsspec_backend.py Introduced test_fsspec_write_file_to_new_dir to test writing a file to a new directory, including commit count verification and file content consistency.

Sequence Diagram(s)

sequenceDiagram
  participant T as Test Function
  participant F as fsspec Backend
  participant O as OxenFS (_open_write)
  participant R as RemoteRepo
  T ->> F: Initialize filesystem parameters
  T ->> O: Request write file operation with file object and commit message
  O ->> O: Check if target directory exists (metadata check)
  O ->> R: Write file and record commit
  R -->> T: Confirm commit and file write
  T ->> T: Assert commit count and validate file content
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Leaping through code from morning to night.
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Actionable comments posted: 0

🧹 Nitpick comments (1)
oxen/tests/test_fsspec_backend.py (1)

79-100: LGTM! Good test coverage for writing to new directories.

The test effectively validates the core functionality of writing files to new directories, maintaining consistency with existing test patterns.

Consider adding additional test cases to cover:

  1. Error scenarios (e.g., writing to a path where parent is a file)
  2. Directory metadata verification after creation
  3. Nested directory creation (e.g., "new_dir/sub_dir/file.txt")

Example test case for error scenario:

def test_fsspec_write_file_to_invalid_dir(chat_bot_remote_repo_fully_pushed):
    local_repo, remote_repo = chat_bot_remote_repo_fully_pushed
    fs = fsspec.filesystem(
        "oxen",
        namespace=remote_repo._repo.namespace(),
        repo=remote_repo._repo.name(),
        host=remote_repo._repo.host,
        scheme=remote_repo._repo.scheme
    )
    
    # First create a file
    with fs.open("file.txt", mode="wb") as f:
        f.write("This is a file")
    
    # Then try to write to a path where parent is this file
    with pytest.raises(ValueError, match="target_dir cannot be an existing file"):
        with fs.open("file.txt/invalid.txt", mode="wb") as f:
            f.write("This should fail")
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📥 Commits

Reviewing files that changed from the base of the PR and between 25f7504 and b13f1c0.

📒 Files selected for processing (2)
  • oxen/python/oxen/oxen_fs.py (2 hunks)
  • oxen/tests/test_fsspec_backend.py (1 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (2)
  • GitHub Check: test
  • GitHub Check: test
🔇 Additional comments (2)
oxen/python/oxen/oxen_fs.py (2)

65-79: LGTM! Clear and helpful documentation example.

The example effectively demonstrates how to use shutil.copyfileobj with OxenFS, following good documentation practices.


219-219:

❓ Verification inconclusive

LGTM! Improved error handling for directory metadata.

The addition of the null check metadata and not metadata.is_dir fixes a potential NoneType error when checking directory metadata.

Let's verify that this is the only place where we need this null check:


🏁 Script executed:

#!/bin/bash
# Search for other metadata.is_dir checks that might need the same null check
ast-grep --pattern 'metadata.is_dir'

Length of output: 237


Action Required: Confirm safeguarded usage of metadata.is_dir in earlier code blocks

The null-check added at line 219 effectively prevents a potential NoneType error for that specific condition. However, our search indicates there are two other occurrences (lines 159 and 197) where metadata.is_dir is used without a null check. Please verify that in those contexts the metadata variable is guaranteed to be non-null. If there's any possibility that metadata could be None in those cases, consider adding a similar null check to prevent runtime errors.

@jcelliott jcelliott requested a review from gschoeni February 13, 2025 17:21
@jcelliott jcelliott merged commit 6e95611 into main Feb 19, 2025
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