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Fix bad file name in the Snakefile
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Sylvain PULICANI committed Sep 2, 2019
1 parent eaebd5c commit 89e1464
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion Snakefile
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ rule dist_all_pairs:
[Template('{rootdir}/{res}/{name}/threshold_{th}_adj_{adj}/${d1}_${d2}_values.tsv.gz').substitute(d1=d1, d2=d2)
for d1, d2 in combinations(config['datasets'], 2)]
output:
'{rootdir}/{res}/{name}/threshold_{th}_adj_{adj}/trees_{method}/all_replicates.phylip'
'{rootdir}/{res}/{name}/threshold_{th}_adj_{adj}/trees_{method}/distances.phylip'
shell:
'{bindir}/dist_all_pairs.py -m {method} {orthologs} {output} {input}'

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