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README.md

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 # AYUKA: A toolkit for fast viral genotyping using whole genome sequencing.
 
-This repository will host the codebase for the AYUKA pipeline.
-Stay tuned for the imminent release of the full codebase here after the preprint is made available. 
-In the meantime, feel free to get in touch if you want to try it.
+
+Please find the singularity container with the full codebase on the releases tab. 
+
+The software can be invoked by running:
+
+```./ayuka22-222.simg```
+
+or 
+
+```singularity run ayuka22-222.simg ```
+_____________________________________________________________
+
+Method description available in our manuscript on biorXiv:
+
+AYUKA: A toolkit for fast viral genotyping using whole genome sequencing
+José Afonso Guerra-Assunção, Richard Goldstein, Judith Breuer
+bioRxiv 2022.09.07.506755; doi: https://doi.org/10.1101/2022.09.07.506755
+
+_____________________________________________________________
+
+Associated databases available on Zenodo:
+
+José Afonso Guerra-Assunção. (2022). AYUKA Genotyper Databases - Human Adenovirus (HAdV) (22-222) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6521576