added bash scripts

LICENSE.txt

@@ -1,3 +1,22 @@
+This software constitutes a joint work and the contributions of individual
+authors are subject to different licenses.  Contributions and licenses are
+listed in the applicable source files, with specific details on each
+individual contribution captured in the revision control system.
+
+--
+For all code, except as indicated otherwise:
+
+PUBLIC DOMAIN NOTICE
+
+This software is freely available to the public for use
+without a copyright notice. Restrictions cannot be placed on its present or
+future use.
+
+--
+For minigraph:
+
+URL: https://lh3.github.io/minigraph
+
 The MIT License
 
 Copyright (c) 2019-     Dana-Farber Cancer Institute
@@ -21,3 +40,32 @@ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
 ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 SOFTWARE.
+
+--
+For Boost:
+
+URL: https://boost.org
+
+Boost Software License - Version 1.0 - August 17th, 2003
+
+Permission is hereby granted, free of charge, to any person or organization
+obtaining a copy of the software and accompanying documentation covered by
+this license (the "Software") to use, reproduce, display, distribute,
+execute, and transmit the Software, and to prepare derivative works of the
+Software, and to permit third-parties to whom the Software is furnished to
+do so, all subject to the following:
+
+The copyright notices in the Software and this entire statement, including
+the above license grant, this restriction and the following disclaimer,
+must be included in all copies of the Software, in whole or in part, and
+all derivative works of the Software, unless such copies or derivative
+works are solely in the form of machine-executable object code generated by
+a source language processor.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
+SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
+FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
+ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+DEALINGS IN THE SOFTWARE.

Makefile

@@ -5,7 +5,7 @@ OBJS=		kalloc.o kthread.o algo.o sys.o gfa-base.o gfa-io.o gfa-aug.o gfa-bbl.o g
             sketch.o misc.o bseq.o options.o shortk.o miniwfa.o \
 			index.o lchain.o gchain1.o galign.o gcmisc.o map-algo.o cal_cov.o \
 			format.o gmap.o ggsimple.o ggen.o asm-call.o graphUtils.o
-PROG=		minigraph
+PROG=		minichain
 LIBS=		-lz -lpthread -lm -fopenmp
 
 ifneq ($(asan),)
@@ -21,7 +21,7 @@ endif
 
 all:$(PROG)
 
-minigraph:$(OBJS) main.o
+minichain:$(OBJS) main.o
 		$(CXX) $(CPPFLAGS) $^ -o $@ $(LIBS)
 
 clean: