Merge pull request #2 from bigbio/dev

Minor changes.

.codacy.yml

@@ -0,0 +1,13 @@
+engines:
+  eslint:
+    enabled: true
+  pylint:
+    enabled: true
+
+eslint:
+  config_file: .eslintrc.json
+
+exclude_paths:
+  - 'tests/**'
+exclude_paths:
+    - 'tests/**'

README.md

@@ -1,7 +1,7 @@
 # quantms-rescoring
 
-[![Build Status](https://travis-ci.com/compomics/quantms-rescoring.svg?branch=main)](https://travis-ci.com/compomics/quantms-rescoring)
-[![codecov](https://codecov.io/gh/compomics/quantms-rescoring/branch/main/graph/badge.svg?token=3ZQZQ2ZQ2D)](https://codecov.io/gh/compomics/quantms-rescoring)
+[![Python package](https://github.com/bigbio/quantms-rescoring/actions/workflows/python-package.yml/badge.svg)](https://github.com/bigbio/quantms-rescoring/actions/workflows/python-package.yml)
+[![codecov](https://codecov.io/gh/bigbio/quantms-rescoring/branch/main/graph/badge.svg?token=3ZQZQ2ZQ2D)](https://codecov.io/gh/bigbio/quantms-rescoring)
 [![PyPI version](https://badge.fury.io/py/quantms-rescoring.svg)](https://badge.fury.io/py/quantms-rescoring)
 [![License](https://img.shields.io/badge/license-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
 

environment.yml

@@ -1,5 +1,5 @@
 # environment.yml
-name: quantmsutils
+name: quantms-rescoring
 channels:
   - bioconda
   - conda-forge
@@ -10,7 +10,6 @@ dependencies:
   - pyopenms>=2.4.0
   - pandas
   - numpy
-  - pyarrow
   - ms2rescore=3.0.3
   - deepLC=2.2.38
   - psm-utils=0.8.3

recipe/meta.yaml

@@ -26,7 +26,6 @@ requirements:
     - pyopenms>=2.4.0
     - pandas
     - numpy
-    - pyarrow
     - ms2rescore=3.0.3
     - deepLC=2.2.38
     - psm-utils=0.8.3