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coot 1.1.12

coot 1.1.12 #2250

Triggered via pull request February 13, 2025 06:44
Status Failure
Total duration 1h 58m 10s
Artifacts 3

build-bottles.yml

on: pull_request
Matrix: build-bottles
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4 errors and 6 warnings
build-bottles (ubuntu-latest)
brewsci/bio/coot 1.1.12 did not build
`brew install --verbose --formula --build-bottle brewsci/bio/coot` failed on Linux!: Formula/coot.rb#L80
/bin/bash ../libtool --tag=CXX --mode=link g++-14 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR='"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/share/coot/locale"' -DPKGPYTHONDIR='"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/lib/python3.12/site-packages/coot"' -DPYTHONDIR='"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/lib/python3.12/site-packages"' -DXDATADIR='"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-24.04.1-gtk4"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/lib/python3.12/site-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/home/linuxbrew/.linuxbrew/opt/[email protected]/include/python3.12 -fopenmp -fPIC -Wall -Wno-unused -std=c++17 -o coot-density-score-by-residue-bin density-score-by-residue-src.o libcootsumo.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la ../analysis/libcoot-analysis.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/home/linuxbrew/.linuxbrew/opt/rdkit/lib -lRDKitMolDraw2D -lRDKitForceFieldHelpers -lRDKitDescriptors -lRDKitForceField -lRDKitSubstructMatch -lRDKitOptimizer -lRDKitDistGeomHelpers -lRDKitDistGeometry -lRDKitChemReactions -lRDKitAlignment -lRDKitEigenSolvers -lRDKitDepictor -lRDKitMolChemicalFeatures -lRDKitPartialCharges -lRDKitFileParsers -lRDKitRDGeometryLib -lRDKitGraphMol -lRDKitShapeHelpers -lRDKitFingerprints -lRDKitMolAlign -lRDKitMolTransforms -lRDKitChemTransforms -lRDKitSmilesParse -lRDKitGenericGroups -lRDKitRingDecomposerLib -lRDKitFilterCatalog -lRDKitCatalogs -lRDKitSubgraphs -lRDKitPartialCharges -lRDKitRDGeneral -lRDKitDataStructs -lboost_serialization -lboost_iostreams -L/home/linuxbrew/.linuxbrew/Cellar/clipper4coot/2.1.20180802_3/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -L/home/linuxbrew/.linuxbrew/Cellar/libccp4/542516076_2/lib -lccp4c -L/home/linuxbrew/.linuxbrew/Cellar/mmdb2/2.0.22/lib -lmmdb2 -L/home/linuxbrew/.linuxbrew/Cellar/mmdb2/2.0.22/lib -lmmdb2 -L/home/linuxbrew/.linuxbrew/Cellar/gsl/2.8/lib -lgsl -lgslcblas -lm mv -f .deps/new-startup.Tpo .deps/new-startup.Po libtool: link: g++-14 -DUSE_MOLECULES_TO_TRIANGLES -DPKGDATADIR=\"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/share/coot/locale\" -DPKGPYTHONDIR=\"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/lib/python3.12/site-packages/coot\" -DPYTHONDIR=\"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/lib/python3.12/site-packages\" -DXDATADIR=\"/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-24.04.1-gtk4\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -I/home/linuxbrew/.linuxbrew/Cellar/coot/1.1.12/lib/python3.12/site-packages/PyGObject-3.42.2-py3.9-linux-x86_64.egg/include -I/home/linuxbrew/.linuxbrew/opt/[email protected]/include/python3.12 -fopenmp -fPIC -Wall -Wno-unused -std=c++17 -o .libs/coot-density-score-by-residue-bin density-score-by-residue-src.o ./.libs/libcootsumo.so -L/home/linuxbrew/.linuxbrew/opt/boost/lib -L/home/linuxbrew/.linuxbrew/Cellar/clipper4coot/2.1.20180802_3/lib -L/home/linuxbrew/.linuxbrew/Cellar/libccp4/542516076_2/lib -L/home/linuxbrew/.linuxbrew/Cellar/mmdb2/2.0.22/lib -L/home/linuxbrew/.linuxbrew/opt/clipper4coot/fftw2/lib -L/home/linuxbrew/.linuxbrew/Cellar/elfutils/0.192/lib -L/home/linuxbrew/.linuxbrew/opt/rdkit/lib -L/home/linuxbrew/.linuxbrew/opt/sqlite/lib -L/home/linuxbrew/.linuxbrew/opt/gemmi/lib -L/home/linuxbrew/.linuxbrew/Cellar/gsl/2.8/lib -L/home/linuxbrew/.linuxbr
build-bottles (ubuntu-latest)
install failed
build-bottles (ubuntu-latest)
Process completed with exit code 1.
build-bottles (macos-14)
Cache not found for keys: macOS-rubygems-5a640ef71d5d89c0ecdbf0386a420c89afe6034cdb3bd78f0c184c4f5f061d37, macOS-rubygems-
build-bottles (macos-15)
Failed to save: Failed to CreateCacheEntry: Received non-retryable error: Failed request: (409) Conflict: cache entry with the same key, version, and scope already exists
build-bottles (macos-15)
Cache not found for keys: macOS-rubygems-5a640ef71d5d89c0ecdbf0386a420c89afe6034cdb3bd78f0c184c4f5f061d37, macOS-rubygems-
build-bottles (macos-13)
Cache not found for keys: macOS-rubygems-5a640ef71d5d89c0ecdbf0386a420c89afe6034cdb3bd78f0c184c4f5f061d37, macOS-rubygems-
build-bottles (ubuntu-latest)
Cache not found for keys: Linux-rubygems-5a640ef71d5d89c0ecdbf0386a420c89afe6034cdb3bd78f0c184c4f5f061d37, Linux-rubygems-
build-bottles (ubuntu-latest)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
bottles-macos-13
79.6 MB
bottles-macos-14
80.2 MB
bottles-macos-15
80.2 MB