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8 followers · 8 following

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: YOLO

Achievements

Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: YOLO

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brikjr/README.md

Innovating at the intersection of bioinformatics, machine learning, and cloud-based automation to drive impactful insights in life sciences.

Expertise

  • Bioinformatics: RNA-Seq, NGS pipelines, Workflow Automation (Snakemake, Nextflow, Web-apps), variant calling, miRNA analysis.
  • Data Science & ML: LLMs, CodonBERT, RNABERT, UTRLM, predictive modeling, RNA stability analysis.
  • Cloud & Automation: AWS, CI/CD, scalable bioinformatics infrastructure, Kubernetes.

Interests

  • Machine Learning in Genomics
  • RNA Therapeutics
  • Automating Data Analysis Pipelines
  • Webapps for Bioinformatics

Contact

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  1. RNA-degradation-esm RNA-degradation-esm Public

    RNA Degradation Prediction

    Jupyter Notebook 4

  2. rna-seq-snakemake rna-seq-snakemake Public

    Forked from snakemake-workflows/rna-seq-star-deseq2

    RNA-seq workflow using STAR and DESeq2

    Python

  3. rnaseq-nf-core rnaseq-nf-core Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow

  4. CodonBERT CodonBERT Public

    Forked from Sanofi-Public/CodonBERT

    Repository for mRNA Paper and CodonBERT publication.

    Python